Query psy2110
Match_columns 622
No_of_seqs 1135 out of 4608
Neff 11.1
Searched_HMMs 29240
Date Sat Aug 17 00:32:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 5.5E-59 1.9E-63 495.9 56.0 437 1-488 59-610 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 7.6E-58 2.6E-62 486.3 61.1 455 1-505 16-566 (577)
3 1nr0_A Actin interacting prote 100.0 2.1E-57 7.1E-62 483.7 52.6 433 2-489 19-567 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 8.4E-56 2.9E-60 470.5 60.2 435 1-486 57-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 8.7E-52 3E-56 478.4 50.1 443 1-489 615-1158(1249)
6 1pgu_A Actin interacting prote 100.0 3.8E-51 1.3E-55 438.3 50.9 439 2-488 19-613 (615)
7 2oaj_A Protein SNI1; WD40 repe 100.0 2.6E-51 8.9E-56 451.9 47.5 451 1-487 17-659 (902)
8 3sfz_A APAF-1, apoptotic pepti 100.0 1E-51 3.5E-56 477.8 42.9 466 1-488 657-1248(1249)
9 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-47 7.4E-52 420.7 47.5 473 2-491 59-785 (902)
10 3mkq_A Coatomer beta'-subunit; 100.0 5.7E-47 2E-51 419.5 48.1 407 1-477 13-486 (814)
11 1pgu_A Actin interacting prote 100.0 1.9E-45 6.6E-50 394.0 51.0 408 37-490 27-573 (615)
12 1vyh_C Platelet-activating fac 100.0 3E-44 1E-48 363.1 40.2 284 80-392 107-410 (410)
13 2pbi_B Guanine nucleotide-bind 100.0 7.6E-43 2.6E-47 345.4 43.3 292 115-486 55-354 (354)
14 3ow8_A WD repeat-containing pr 100.0 5.4E-43 1.9E-47 341.2 40.8 284 79-392 30-320 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 1.3E-42 4.6E-47 342.1 43.8 279 195-486 56-340 (340)
16 1vyh_C Platelet-activating fac 100.0 1.1E-42 3.6E-47 351.7 42.5 288 117-445 101-409 (410)
17 1r5m_A SIR4-interacting protei 100.0 6.8E-43 2.3E-47 356.2 41.2 351 104-488 25-424 (425)
18 3ow8_A WD repeat-containing pr 100.0 3.6E-42 1.2E-46 335.4 41.6 280 195-488 33-320 (321)
19 3mkq_A Coatomer beta'-subunit; 100.0 6.6E-42 2.3E-46 378.9 48.7 383 80-500 12-438 (814)
20 1got_B GT-beta; complex (GTP-b 100.0 4.9E-42 1.7E-46 338.1 42.4 283 77-390 50-340 (340)
21 3frx_A Guanine nucleotide-bind 100.0 4.4E-41 1.5E-45 327.9 43.0 295 115-488 8-316 (319)
22 2pbi_B Guanine nucleotide-bind 100.0 3.9E-41 1.3E-45 333.1 43.1 285 76-390 58-354 (354)
23 2ynn_A Coatomer subunit beta'; 100.0 3.5E-41 1.2E-45 326.4 41.8 292 115-447 4-302 (304)
24 1r5m_A SIR4-interacting protei 100.0 8.4E-42 2.9E-46 348.1 39.5 340 73-446 37-424 (425)
25 4g56_B MGC81050 protein; prote 100.0 3.1E-42 1.1E-46 341.2 34.6 308 45-393 21-343 (357)
26 2ynn_A Coatomer subunit beta'; 100.0 2.9E-41 9.8E-46 327.0 40.2 282 81-392 13-301 (304)
27 1gxr_A ESG1, transducin-like e 100.0 2.3E-41 7.9E-46 333.5 39.7 320 2-392 10-336 (337)
28 4gqb_B Methylosome protein 50; 100.0 7.9E-42 2.7E-46 335.3 35.4 296 81-393 30-331 (344)
29 4gqb_B Methylosome protein 50; 100.0 1.5E-41 5E-46 333.4 36.7 290 145-449 34-333 (344)
30 3vl1_A 26S proteasome regulato 100.0 6.2E-42 2.1E-46 348.6 35.0 340 85-488 60-418 (420)
31 2pm9_A Protein WEB1, protein t 100.0 7.6E-43 2.6E-47 354.9 27.5 357 83-489 14-414 (416)
32 2xzm_R RACK1; ribosome, transl 100.0 5.4E-41 1.8E-45 331.2 39.3 299 115-489 12-340 (343)
33 3iz6_a 40S ribosomal protein R 100.0 2.5E-42 8.6E-47 345.5 30.2 305 164-490 47-376 (380)
34 4g56_B MGC81050 protein; prote 100.0 1.5E-41 5E-46 336.4 35.1 319 87-449 11-345 (357)
35 4ery_A WD repeat-containing pr 100.0 4.8E-40 1.6E-44 320.2 44.7 294 114-488 13-311 (312)
36 3iz6_a 40S ribosomal protein R 100.0 4.9E-42 1.7E-46 343.4 30.7 308 104-449 46-377 (380)
37 3vl1_A 26S proteasome regulato 100.0 2.6E-41 8.9E-46 344.0 34.9 321 3-392 58-418 (420)
38 2pm9_A Protein WEB1, protein t 100.0 1.5E-42 5.2E-47 352.7 25.7 338 3-392 14-413 (416)
39 4ery_A WD repeat-containing pr 100.0 4.1E-40 1.4E-44 320.7 41.4 283 80-392 22-311 (312)
40 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.2E-40 2.1E-44 323.6 41.5 305 115-454 6-342 (345)
41 1gxr_A ESG1, transducin-like e 100.0 6.9E-40 2.4E-44 322.9 41.1 325 80-445 8-335 (337)
42 1erj_A Transcriptional repress 100.0 8.9E-40 3E-44 328.6 42.6 297 145-488 68-388 (393)
43 1erj_A Transcriptional repress 100.0 1.3E-39 4.3E-44 327.5 41.3 301 78-393 61-389 (393)
44 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-39 5.2E-44 320.8 38.4 281 83-393 18-335 (345)
45 3frx_A Guanine nucleotide-bind 100.0 5.2E-39 1.8E-43 313.2 41.4 283 78-393 13-317 (319)
46 2j04_B YDR362CP, TAU91; beta p 100.0 3.7E-41 1.3E-45 346.9 26.1 343 79-489 131-517 (524)
47 2xzm_R RACK1; ribosome, transl 100.0 4.2E-39 1.4E-43 317.6 39.6 290 1-352 21-341 (343)
48 2hes_X YDR267CP; beta-propelle 100.0 7.7E-39 2.6E-43 313.7 40.4 295 112-447 2-328 (330)
49 4aow_A Guanine nucleotide-bind 100.0 7.2E-38 2.4E-42 309.0 43.3 294 112-489 26-337 (340)
50 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.2E-38 2.5E-42 320.9 44.5 324 113-489 107-442 (445)
51 2hes_X YDR267CP; beta-propelle 100.0 2.4E-38 8.2E-43 310.1 38.7 280 81-392 14-327 (330)
52 3zwl_B Eukaryotic translation 100.0 2.3E-37 7.9E-42 308.9 44.7 280 195-489 33-346 (369)
53 2j04_B YDR362CP, TAU91; beta p 100.0 6.7E-40 2.3E-44 337.5 23.5 340 2-392 134-516 (524)
54 3dm0_A Maltose-binding peripla 100.0 3.2E-37 1.1E-41 333.9 43.6 292 116-488 374-692 (694)
55 3zwl_B Eukaryotic translation 100.0 6.3E-37 2.2E-41 305.7 42.0 284 78-393 29-346 (369)
56 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.2E-37 2.8E-41 313.0 43.4 318 78-447 114-442 (445)
57 3v7d_B Cell division control p 100.0 1.5E-36 5.2E-41 313.0 45.1 322 115-487 112-461 (464)
58 4aow_A Guanine nucleotide-bind 100.0 5.7E-37 2E-41 302.5 39.3 288 1-353 38-339 (340)
59 3gre_A Serine/threonine-protei 100.0 5.2E-38 1.8E-42 321.3 30.4 342 88-486 34-437 (437)
60 3ei3_B DNA damage-binding prot 100.0 5.9E-37 2E-41 307.7 36.8 278 195-488 74-381 (383)
61 4e54_B DNA damage-binding prot 100.0 6E-38 2.1E-42 320.0 29.9 291 145-489 123-430 (435)
62 3ei3_B DNA damage-binding prot 100.0 4.3E-37 1.5E-41 308.7 34.8 299 107-447 56-382 (383)
63 3gre_A Serine/threonine-protei 100.0 6.8E-38 2.3E-42 320.5 29.2 322 1-390 63-437 (437)
64 3dm0_A Maltose-binding peripla 100.0 9.5E-37 3.2E-41 330.2 39.3 288 1-350 382-692 (694)
65 1sq9_A Antiviral protein SKI8; 100.0 1.1E-36 3.6E-41 307.5 36.8 285 80-392 15-394 (397)
66 2j04_A TAU60, YPL007P, hypothe 100.0 2.2E-38 7.6E-43 316.5 23.8 311 82-478 16-349 (588)
67 1sq9_A Antiviral protein SKI8; 100.0 5.5E-37 1.9E-41 309.6 34.3 292 116-449 8-397 (397)
68 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-36 5E-41 303.6 36.9 285 80-393 7-361 (372)
69 3i2n_A WD repeat-containing pr 100.0 1E-36 3.5E-41 302.8 35.4 285 80-393 17-353 (357)
70 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-38 5.4E-43 317.6 21.1 317 1-435 15-350 (588)
71 3v7d_B Cell division control p 100.0 1.3E-35 4.6E-40 306.0 43.1 308 88-444 127-460 (464)
72 3k26_A Polycomb protein EED; W 100.0 1.2E-36 4.1E-41 303.4 34.0 296 119-446 13-365 (366)
73 4h5i_A Guanine nucleotide-exch 100.0 1.8E-36 6.2E-41 300.6 33.1 289 82-393 15-343 (365)
74 3odt_A Protein DOA1; ubiquitin 100.0 2.1E-35 7.3E-40 287.5 40.0 291 114-454 8-303 (313)
75 3k26_A Polycomb protein EED; W 100.0 1.9E-36 6.6E-41 301.9 32.2 286 80-392 17-365 (366)
76 4a11_B DNA excision repair pro 100.0 1.3E-36 4.6E-41 307.9 31.5 351 104-488 23-404 (408)
77 4gga_A P55CDC, cell division c 100.0 4.6E-35 1.6E-39 297.3 41.9 279 81-393 105-395 (420)
78 3i2n_A WD repeat-containing pr 100.0 6.4E-36 2.2E-40 297.1 34.8 293 118-489 12-353 (357)
79 3dwl_C Actin-related protein 2 100.0 2.1E-37 7.3E-42 310.3 24.0 234 145-392 15-280 (377)
80 3odt_A Protein DOA1; ubiquitin 100.0 6.3E-35 2.2E-39 284.2 40.6 274 80-393 17-296 (313)
81 4aez_A CDC20, WD repeat-contai 100.0 2.9E-35 9.8E-40 297.0 39.2 276 84-393 96-380 (401)
82 4a11_B DNA excision repair pro 100.0 6.3E-36 2.2E-40 302.9 34.4 307 161-489 21-365 (408)
83 3dwl_C Actin-related protein 2 100.0 2.8E-37 9.7E-42 309.4 23.9 280 81-391 11-377 (377)
84 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-35 4.9E-40 296.4 36.0 280 195-489 9-361 (372)
85 4ggc_A P55CDC, cell division c 100.0 1.1E-34 3.8E-39 283.1 39.1 276 84-393 28-315 (318)
86 4aez_A CDC20, WD repeat-contai 100.0 8.3E-35 2.8E-39 293.6 38.5 287 145-457 97-390 (401)
87 4e54_B DNA damage-binding prot 100.0 3.7E-36 1.3E-40 306.7 27.6 283 81-393 119-430 (435)
88 4gga_A P55CDC, cell division c 100.0 5.5E-35 1.9E-39 296.7 35.4 295 4-367 108-411 (420)
89 3dw8_B Serine/threonine-protei 100.0 1.1E-34 3.8E-39 297.7 36.4 280 195-487 29-444 (447)
90 4h5i_A Guanine nucleotide-exch 100.0 2.1E-35 7E-40 293.0 29.0 281 196-489 16-343 (365)
91 2pm7_B Protein transport prote 100.0 3.4E-34 1.2E-38 276.2 34.9 247 118-392 3-284 (297)
92 4ggc_A P55CDC, cell division c 100.0 1.2E-33 4E-38 275.9 38.1 274 197-488 28-314 (318)
93 3dw8_B Serine/threonine-protei 100.0 2.7E-34 9.1E-39 294.8 34.6 303 79-392 26-445 (447)
94 2pm7_B Protein transport prote 100.0 7.9E-34 2.7E-38 273.7 34.7 242 80-350 8-284 (297)
95 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-34 5.9E-39 285.6 29.3 306 118-492 5-340 (351)
96 1yfq_A Cell cycle arrest prote 100.0 2.8E-33 9.5E-38 276.3 35.4 281 195-487 12-322 (342)
97 3bws_A Protein LP49; two-domai 100.0 4.7E-33 1.6E-37 284.3 38.0 286 75-392 116-431 (433)
98 1p22_A F-BOX/WD-repeat protein 100.0 2.3E-33 7.8E-38 286.3 35.1 268 82-393 134-414 (435)
99 3bg1_A Protein SEC13 homolog; 100.0 5.3E-34 1.8E-38 277.4 28.4 246 119-392 8-292 (316)
100 1yfq_A Cell cycle arrest prote 100.0 1.4E-33 4.7E-38 278.5 31.8 274 80-390 10-321 (342)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 6.2E-34 2.1E-38 287.5 28.3 282 198-489 38-342 (402)
102 3mmy_A MRNA export factor; mRN 100.0 8.3E-33 2.8E-37 275.7 36.1 296 169-487 25-344 (368)
103 3jrp_A Fusion protein of prote 100.0 5.8E-33 2E-37 278.1 34.9 251 114-392 1-286 (379)
104 1l0q_A Surface layer protein; 100.0 1.5E-31 5.2E-36 269.1 44.9 279 154-459 3-287 (391)
105 1k32_A Tricorn protease; prote 100.0 3.6E-32 1.2E-36 307.1 44.7 456 2-491 53-639 (1045)
106 3f3f_A Nucleoporin SEH1; struc 100.0 7.7E-33 2.6E-37 273.7 33.8 284 80-392 10-336 (351)
107 3bws_A Protein LP49; two-domai 100.0 5.5E-32 1.9E-36 276.3 40.8 276 197-488 125-431 (433)
108 1l0q_A Surface layer protein; 100.0 2.1E-31 7.1E-36 268.1 43.8 332 95-477 4-365 (391)
109 1p22_A F-BOX/WD-repeat protein 100.0 3E-32 1E-36 278.1 37.1 294 145-469 137-434 (435)
110 3mmy_A MRNA export factor; mRN 100.0 5.5E-33 1.9E-37 277.0 30.7 288 109-440 24-339 (368)
111 3vu4_A KMHSV2; beta-propeller 100.0 7.7E-33 2.6E-37 273.7 31.4 300 108-447 3-336 (355)
112 3bg1_A Protein SEC13 homolog; 100.0 1.5E-33 5.1E-38 274.2 25.4 242 80-350 12-292 (316)
113 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.8E-32 1.3E-36 278.5 35.5 295 83-392 6-390 (450)
114 2aq5_A Coronin-1A; WD40 repeat 100.0 4.9E-33 1.7E-37 280.9 28.4 277 86-393 39-342 (402)
115 1k32_A Tricorn protease; prote 100.0 1.3E-31 4.6E-36 302.4 41.8 376 82-505 53-488 (1045)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.5E-31 5.1E-36 274.1 35.8 278 196-488 6-390 (450)
117 3jrp_A Fusion protein of prote 100.0 1.5E-31 5.3E-36 267.8 33.6 249 195-450 12-290 (379)
118 2xyi_A Probable histone-bindin 100.0 2.5E-31 8.4E-36 270.5 35.1 239 144-393 131-410 (430)
119 3vu4_A KMHSV2; beta-propeller 100.0 3.8E-31 1.3E-35 261.5 35.3 290 167-489 3-336 (355)
120 1nir_A Nitrite reductase; hemo 100.0 1.4E-30 4.6E-35 270.7 39.2 330 88-458 144-525 (543)
121 4gq1_A NUP37; propeller, trans 100.0 2.1E-32 7.2E-37 274.6 24.6 273 146-488 94-388 (393)
122 2xyi_A Probable histone-bindin 100.0 1.1E-30 3.6E-35 265.8 33.9 250 74-352 121-411 (430)
123 3lrv_A PRE-mRNA-splicing facto 100.0 9.9E-31 3.4E-35 257.8 31.0 273 88-445 43-331 (343)
124 3jro_A Fusion protein of prote 100.0 1.7E-31 5.9E-36 290.4 26.9 245 80-353 8-287 (753)
125 3jro_A Fusion protein of prote 100.0 1.3E-31 4.6E-36 291.3 24.6 249 117-393 2-285 (753)
126 2w18_A PALB2, fancn, partner a 100.0 9.9E-30 3.4E-34 238.6 33.3 258 95-391 56-355 (356)
127 4gq1_A NUP37; propeller, trans 100.0 1.8E-31 6.3E-36 267.8 23.0 253 86-392 94-388 (393)
128 3lrv_A PRE-mRNA-splicing facto 100.0 1E-30 3.5E-35 257.6 27.8 267 201-488 43-332 (343)
129 1nir_A Nitrite reductase; hemo 100.0 1.4E-29 4.7E-34 263.1 36.9 337 148-504 144-535 (543)
130 2w18_A PALB2, fancn, partner a 100.0 3E-29 1E-33 235.3 32.6 281 144-487 42-355 (356)
131 2hqs_A Protein TOLB; TOLB, PAL 100.0 7.5E-29 2.6E-33 250.1 29.0 299 145-472 66-410 (415)
132 2ecf_A Dipeptidyl peptidase IV 100.0 4.1E-28 1.4E-32 265.2 35.7 341 82-448 37-460 (741)
133 2ecf_A Dipeptidyl peptidase IV 100.0 9.2E-28 3.1E-32 262.5 34.2 329 144-488 39-458 (741)
134 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.8E-27 9.6E-32 238.6 33.3 301 83-428 64-410 (415)
135 1xfd_A DIP, dipeptidyl aminope 100.0 2.1E-27 7.1E-32 259.0 29.0 350 84-478 19-428 (723)
136 3u4y_A Uncharacterized protein 100.0 1.3E-25 4.4E-30 220.2 35.4 288 148-456 4-312 (331)
137 1xfd_A DIP, dipeptidyl aminope 100.0 1.1E-26 3.7E-31 253.3 28.0 324 4-382 19-429 (723)
138 2z3z_A Dipeptidyl aminopeptida 100.0 2.2E-26 7.5E-31 250.0 30.2 330 86-449 30-437 (706)
139 1ri6_A Putative isomerase YBHE 99.9 7.1E-25 2.4E-29 216.0 33.5 298 155-472 7-335 (343)
140 3vgz_A Uncharacterized protein 99.9 3.5E-24 1.2E-28 212.0 36.9 280 82-384 41-335 (353)
141 1ri6_A Putative isomerase YBHE 99.9 2.2E-24 7.5E-29 212.5 32.8 267 94-392 5-307 (343)
142 3vgz_A Uncharacterized protein 99.9 9.4E-24 3.2E-28 208.9 37.5 267 196-478 42-332 (353)
143 3u4y_A Uncharacterized protein 99.9 3.5E-24 1.2E-28 210.0 33.9 275 201-490 4-305 (331)
144 2z3z_A Dipeptidyl aminopeptida 99.9 9.7E-25 3.3E-29 237.1 32.3 324 146-490 30-436 (706)
145 2ojh_A Uncharacterized protein 99.9 3.7E-24 1.3E-28 205.9 27.6 250 103-383 21-292 (297)
146 1pby_B Quinohemoprotein amine 99.9 1.5E-23 5.3E-28 205.9 30.8 277 154-458 2-321 (337)
147 1z68_A Fibroblast activation p 99.9 2.2E-24 7.5E-29 234.7 26.7 329 86-455 20-451 (719)
148 1pby_B Quinohemoprotein amine 99.9 1.1E-23 3.9E-28 206.8 28.9 269 94-392 2-309 (337)
149 2ojh_A Uncharacterized protein 99.9 1.9E-23 6.3E-28 201.0 25.7 257 158-437 17-293 (297)
150 3scy_A Hypothetical bacterial 99.9 8.8E-22 3E-26 195.3 32.7 298 149-468 9-360 (361)
151 1jmx_B Amine dehydrogenase; ox 99.9 6.1E-22 2.1E-26 195.5 30.8 267 87-392 5-324 (349)
152 3hfq_A Uncharacterized protein 99.9 1.6E-21 5.5E-26 192.3 33.4 267 215-488 15-316 (347)
153 3o4h_A Acylamino-acid-releasin 99.9 7.1E-23 2.4E-27 216.9 25.2 270 81-392 21-314 (582)
154 3o4h_A Acylamino-acid-releasin 99.9 1.5E-22 5.2E-27 214.4 27.4 268 196-488 23-314 (582)
155 3hfq_A Uncharacterized protein 99.9 2.5E-21 8.5E-26 190.9 34.1 236 145-392 43-316 (347)
156 1z68_A Fibroblast activation p 99.9 2.6E-22 8.8E-27 218.4 27.3 330 5-359 19-451 (719)
157 3scy_A Hypothetical bacterial 99.9 1.9E-20 6.3E-25 185.8 38.1 273 91-392 11-336 (361)
158 3pe7_A Oligogalacturonate lyas 99.9 3.8E-21 1.3E-25 192.9 32.8 309 108-488 14-381 (388)
159 1jmx_B Amine dehydrogenase; ox 99.9 1.9E-21 6.4E-26 192.0 29.6 283 146-457 4-335 (349)
160 4a5s_A Dipeptidyl peptidase 4 99.9 6.7E-21 2.3E-25 207.2 34.6 333 85-456 20-458 (740)
161 3pe7_A Oligogalacturonate lyas 99.9 1.8E-21 6.2E-26 195.2 23.7 276 87-392 41-381 (388)
162 4a5s_A Dipeptidyl peptidase 4 99.9 1.2E-20 4.1E-25 205.1 30.5 321 145-488 20-448 (740)
163 2oit_A Nucleoporin 214KDA; NH2 99.9 1.8E-20 6.1E-25 189.3 28.4 199 80-308 91-332 (434)
164 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.3E-19 4.4E-24 179.7 31.4 275 208-489 4-341 (365)
165 2oiz_A Aromatic amine dehydrog 99.9 2.1E-19 7.3E-24 177.1 32.8 291 151-472 13-360 (361)
166 2oit_A Nucleoporin 214KDA; NH2 99.9 1.1E-19 3.9E-24 183.5 30.8 294 84-393 39-405 (434)
167 1qks_A Cytochrome CD1 nitrite 99.9 5.4E-18 1.9E-22 175.2 43.8 333 91-458 165-549 (567)
168 3c5m_A Oligogalacturonate lyas 99.9 2E-20 6.7E-25 188.2 24.4 308 107-450 13-387 (396)
169 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.9E-19 6.5E-24 178.5 29.6 237 145-392 43-340 (365)
170 2oiz_A Aromatic amine dehydrog 99.9 3.1E-19 1.1E-23 175.9 30.7 262 86-375 54-360 (361)
171 3c5m_A Oligogalacturonate lyas 99.8 1.8E-19 6.3E-24 181.1 22.3 275 197-487 38-380 (396)
172 1qks_A Cytochrome CD1 nitrite 99.8 7.6E-17 2.6E-21 166.7 36.9 321 41-393 168-538 (567)
173 2dg1_A DRP35, lactonase; beta 99.8 2.3E-17 8E-22 161.4 30.8 266 84-383 8-300 (333)
174 3azo_A Aminopeptidase; POP fam 99.8 1.8E-18 6.3E-23 186.2 24.9 299 145-457 27-379 (662)
175 3azo_A Aminopeptidase; POP fam 99.8 8.4E-18 2.9E-22 181.0 29.2 294 80-392 22-368 (662)
176 2gop_A Trilobed protease; beta 99.8 4.3E-17 1.5E-21 160.5 30.1 258 84-392 17-330 (347)
177 3fvz_A Peptidyl-glycine alpha- 99.8 6.3E-17 2.2E-21 157.6 29.3 241 142-393 24-322 (329)
178 3fvz_A Peptidyl-glycine alpha- 99.8 2E-16 7E-21 154.0 29.6 241 236-489 23-322 (329)
179 3dsm_A Uncharacterized protein 99.8 2.9E-16 1E-20 152.6 30.4 282 161-467 15-319 (328)
180 2gop_A Trilobed protease; beta 99.8 2.2E-16 7.6E-21 155.4 29.8 255 196-488 16-330 (347)
181 1q7f_A NHL, brain tumor CG1071 99.8 1.5E-15 5.1E-20 144.9 32.5 240 234-488 27-279 (286)
182 1q7f_A NHL, brain tumor CG1071 99.8 1.3E-15 4.5E-20 145.3 31.4 236 196-448 31-281 (286)
183 2dg1_A DRP35, lactonase; beta 99.8 8.4E-16 2.9E-20 150.3 29.5 267 197-478 8-298 (333)
184 3sjl_D Methylamine dehydrogena 99.7 1.4E-15 4.7E-20 147.1 29.8 294 146-470 37-384 (386)
185 2xdw_A Prolyl endopeptidase; a 99.7 7.1E-16 2.4E-20 166.9 31.0 236 145-393 128-414 (710)
186 2xdw_A Prolyl endopeptidase; a 99.7 2.2E-15 7.4E-20 163.1 33.0 276 204-489 81-414 (710)
187 2bkl_A Prolyl endopeptidase; m 99.7 2.8E-16 9.4E-21 169.6 25.4 275 88-393 74-397 (695)
188 2mad_H Methylamine dehydrogena 99.7 5.2E-14 1.8E-18 138.5 38.5 276 149-454 28-357 (373)
189 3dsm_A Uncharacterized protein 99.7 7.8E-15 2.7E-19 142.5 31.2 252 85-370 47-319 (328)
190 3e5z_A Putative gluconolactona 99.7 6.1E-15 2.1E-19 141.4 29.2 228 145-392 31-285 (296)
191 2mad_H Methylamine dehydrogena 99.7 1.2E-13 4E-18 136.0 38.4 273 202-491 28-352 (373)
192 2z2n_A Virginiamycin B lyase; 99.7 2.3E-13 8E-18 130.5 39.6 272 196-488 16-294 (299)
193 3sjl_D Methylamine dehydrogena 99.7 1.5E-14 5.1E-19 139.9 30.6 277 200-491 38-365 (386)
194 2z2n_A Virginiamycin B lyase; 99.7 1.7E-13 5.9E-18 131.4 38.3 275 145-449 18-297 (299)
195 3e5z_A Putative gluconolactona 99.7 1.3E-14 4.6E-19 139.0 28.4 233 196-450 29-289 (296)
196 3no2_A Uncharacterized protein 99.7 1.7E-14 5.8E-19 135.8 27.8 214 92-339 4-231 (276)
197 2bkl_A Prolyl endopeptidase; m 99.7 4.1E-15 1.4E-19 160.4 25.0 275 203-489 76-397 (695)
198 3c75_H MADH, methylamine dehyd 99.7 3.7E-14 1.3E-18 139.9 28.2 276 151-454 82-409 (426)
199 1rwi_B Serine/threonine-protei 99.7 2.4E-14 8.2E-19 135.2 25.7 236 145-393 27-264 (270)
200 1rwi_B Serine/threonine-protei 99.7 3.2E-14 1.1E-18 134.3 26.0 239 196-449 25-266 (270)
201 3c75_H MADH, methylamine dehyd 99.7 5.9E-14 2E-18 138.4 27.1 275 204-493 82-406 (426)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.4E-13 8.3E-18 131.4 30.2 238 145-392 21-298 (314)
203 3no2_A Uncharacterized protein 99.6 1.4E-13 4.8E-18 129.5 27.2 213 152-381 4-231 (276)
204 2qc5_A Streptogramin B lactona 99.6 3.1E-12 1.1E-16 122.6 37.3 272 145-445 23-298 (300)
205 2qc5_A Streptogramin B lactona 99.6 4.3E-12 1.5E-16 121.6 38.0 272 196-487 21-298 (300)
206 1yr2_A Prolyl oligopeptidase; 99.6 3.3E-14 1.1E-18 154.4 25.7 234 145-393 166-441 (741)
207 1yr2_A Prolyl oligopeptidase; 99.6 1.4E-13 4.7E-18 149.6 26.8 274 203-489 115-441 (741)
208 3hrp_A Uncharacterized protein 99.6 1.4E-12 4.7E-17 130.3 29.1 234 142-391 131-408 (409)
209 1mda_H Methylamine dehydrogena 99.6 3.1E-13 1.1E-17 131.2 22.5 268 164-469 47-366 (368)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 3.2E-12 1.1E-16 123.5 29.5 242 235-488 16-298 (314)
211 3g4e_A Regucalcin; six bladed 99.6 3.2E-12 1.1E-16 122.3 28.2 223 145-382 16-261 (297)
212 2qe8_A Uncharacterized protein 99.5 1.8E-12 6.2E-17 126.7 25.0 266 196-478 18-309 (343)
213 3hrp_A Uncharacterized protein 99.5 1.5E-11 5.3E-16 122.7 31.7 237 237-487 131-408 (409)
214 2ghs_A AGR_C_1268P; regucalcin 99.5 2.1E-11 7.3E-16 118.1 30.8 220 145-382 52-291 (326)
215 3g4e_A Regucalcin; six bladed 99.5 4E-11 1.4E-15 114.6 30.7 232 234-478 10-260 (297)
216 3iuj_A Prolyl endopeptidase; h 99.5 1.2E-11 3.9E-16 133.1 27.7 240 83-354 130-408 (693)
217 4a2l_A BT_4663, two-component 99.5 1.5E-08 5.2E-13 110.9 52.9 427 2-488 88-570 (795)
218 1kb0_A Quinohemoprotein alcoho 99.5 2.8E-11 9.5E-16 128.8 29.8 308 153-477 77-537 (677)
219 3iuj_A Prolyl endopeptidase; h 99.5 5.2E-12 1.8E-16 135.7 23.6 234 143-393 130-405 (693)
220 3q7m_A Lipoprotein YFGL, BAMB; 99.5 2.3E-10 7.7E-15 113.6 33.0 304 153-486 53-375 (376)
221 4a2l_A BT_4663, two-component 99.5 4.4E-08 1.5E-12 107.2 54.2 436 4-488 175-658 (795)
222 3dr2_A Exported gluconolactona 99.4 7.1E-11 2.4E-15 113.3 27.9 240 228-485 36-302 (305)
223 1yiq_A Quinohemoprotein alcoho 99.4 5.9E-11 2E-15 126.5 29.8 308 153-477 70-536 (689)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.4 7.2E-10 2.5E-14 109.9 35.6 305 93-444 53-375 (376)
225 1fwx_A Nitrous oxide reductase 99.4 7.5E-12 2.6E-16 126.0 20.9 312 155-489 17-431 (595)
226 1mda_H Methylamine dehydrogena 99.4 4.6E-12 1.6E-16 123.0 18.7 252 217-491 47-348 (368)
227 3dr2_A Exported gluconolactona 99.4 5.1E-11 1.8E-15 114.3 25.9 222 145-385 48-299 (305)
228 2qe8_A Uncharacterized protein 99.4 8.2E-12 2.8E-16 122.1 20.5 276 83-387 18-315 (343)
229 1kb0_A Quinohemoprotein alcoho 99.4 2.2E-10 7.7E-15 121.8 32.9 312 93-432 77-536 (677)
230 2ece_A 462AA long hypothetical 99.4 7.3E-11 2.5E-15 114.6 25.8 233 88-339 88-399 (462)
231 1xip_A Nucleoporin NUP159; bet 99.4 1.5E-11 5E-16 119.6 19.3 171 83-295 39-231 (388)
232 1yiq_A Quinohemoprotein alcoho 99.4 1.8E-10 6E-15 122.9 29.5 321 39-379 69-534 (689)
233 2ece_A 462AA long hypothetical 99.4 4.6E-10 1.6E-14 109.0 29.5 224 246-478 93-399 (462)
234 3hxj_A Pyrrolo-quinoline quino 99.4 1.6E-11 5.5E-16 119.5 19.0 299 146-488 24-323 (330)
235 1fwx_A Nitrous oxide reductase 99.4 3.3E-11 1.1E-15 121.3 21.0 244 91-382 99-407 (595)
236 2ghs_A AGR_C_1268P; regucalcin 99.4 2E-09 7E-14 104.1 32.8 226 238-478 50-290 (326)
237 1xip_A Nucleoporin NUP159; bet 99.4 2.5E-11 8.6E-16 118.0 18.7 179 144-337 40-230 (388)
238 1npe_A Nidogen, entactin; glyc 99.3 4.2E-09 1.4E-13 98.7 31.8 250 207-472 2-263 (267)
239 3hxj_A Pyrrolo-quinoline quino 99.3 2.7E-10 9.2E-15 110.7 23.2 299 87-447 25-324 (330)
240 3v9f_A Two-component system se 99.3 3.6E-07 1.2E-11 99.7 49.8 449 3-488 164-655 (781)
241 3v9f_A Two-component system se 99.3 1.1E-06 3.6E-11 96.0 52.9 444 2-489 66-568 (781)
242 2ad6_A Methanol dehydrogenase 99.2 2.1E-08 7.2E-13 104.3 33.1 309 153-478 62-525 (571)
243 2iwa_A Glutamine cyclotransfer 99.2 3.1E-09 1E-13 97.2 22.3 194 85-310 24-238 (266)
244 1npe_A Nidogen, entactin; glyc 99.2 6E-08 2E-12 90.8 32.0 217 145-375 39-263 (267)
245 2iwa_A Glutamine cyclotransfer 99.2 8.5E-09 2.9E-13 94.3 24.6 206 228-447 11-237 (266)
246 1kv9_A Type II quinohemoprotei 99.2 2.7E-08 9.1E-13 105.8 31.5 308 153-478 66-520 (668)
247 1w6s_A Methanol dehydrogenase 99.2 3E-08 1E-12 102.9 30.2 306 153-473 62-529 (599)
248 1kv9_A Type II quinohemoprotei 99.2 6E-08 2E-12 103.1 32.6 282 93-392 66-487 (668)
249 3s94_A LRP-6, low-density lipo 99.2 1.3E-05 4.6E-10 83.8 51.0 430 3-487 41-549 (619)
250 2hz6_A Endoplasmic reticulum t 99.1 1.1E-10 3.6E-15 115.1 9.0 205 247-473 8-217 (369)
251 2hz6_A Endoplasmic reticulum t 99.1 1.7E-11 5.7E-16 120.8 2.9 204 152-375 8-216 (369)
252 4a0p_A LRP6, LRP-6, low-densit 99.1 3.1E-05 1.1E-09 81.1 54.1 427 3-488 38-548 (628)
253 3s94_A LRP-6, low-density lipo 99.0 3.8E-05 1.3E-09 80.4 48.3 366 83-490 41-511 (619)
254 1flg_A Protein (quinoprotein e 99.0 4.7E-07 1.6E-11 94.2 32.6 307 153-477 68-547 (582)
255 2ad6_A Methanol dehydrogenase 99.0 1.9E-07 6.4E-12 97.1 29.6 283 93-392 62-493 (571)
256 3nol_A Glutamine cyclotransfer 99.0 5.2E-08 1.8E-12 87.8 21.7 193 228-435 33-244 (262)
257 2fp8_A Strictosidine synthase; 99.0 1.2E-07 4E-12 91.6 24.9 242 145-392 22-312 (322)
258 3nol_A Glutamine cyclotransfer 99.0 5.7E-08 1.9E-12 87.5 20.0 184 85-302 46-249 (262)
259 1w6s_A Methanol dehydrogenase 99.0 3.3E-07 1.1E-11 95.1 28.8 269 87-376 111-529 (599)
260 2p4o_A Hypothetical protein; p 98.9 8.7E-07 3E-11 84.6 28.2 222 145-383 35-278 (306)
261 3mbr_X Glutamine cyclotransfer 98.9 5.4E-07 1.8E-11 80.5 22.9 193 228-435 11-223 (243)
262 2p4o_A Hypothetical protein; p 98.9 1.8E-06 6.2E-11 82.4 28.3 226 237-478 32-276 (306)
263 1flg_A Protein (quinoprotein e 98.9 3E-06 1E-10 88.1 31.7 314 94-434 69-548 (582)
264 3nok_A Glutaminyl cyclase; bet 98.9 4.3E-07 1.5E-11 81.8 21.5 182 238-434 56-253 (268)
265 3nok_A Glutaminyl cyclase; bet 98.9 1.2E-06 4.1E-11 78.9 23.5 192 269-478 44-253 (268)
266 1ijq_A LDL receptor, low-densi 98.8 3.4E-05 1.2E-09 73.7 35.3 235 208-457 3-248 (316)
267 3v64_C Agrin; beta propeller, 98.8 7.5E-06 2.6E-10 79.5 30.8 241 86-359 38-283 (349)
268 3v65_B Low-density lipoprotein 98.8 3.9E-06 1.3E-10 82.8 28.8 242 86-360 81-327 (386)
269 3mbr_X Glutamine cyclotransfer 98.8 2.6E-06 8.9E-11 76.1 24.6 193 269-478 10-222 (243)
270 2xe4_A Oligopeptidase B; hydro 98.8 9E-07 3.1E-11 95.7 25.1 240 84-354 176-461 (751)
271 1k3i_A Galactose oxidase precu 98.8 7E-07 2.4E-11 95.2 23.9 271 146-435 190-530 (656)
272 2fp8_A Strictosidine synthase; 98.8 4.1E-06 1.4E-10 80.6 27.2 249 85-350 22-312 (322)
273 1k3i_A Galactose oxidase precu 98.8 4.4E-07 1.5E-11 96.7 21.9 231 86-340 247-530 (656)
274 1ijq_A LDL receptor, low-densi 98.8 3.3E-05 1.1E-09 73.8 32.9 225 250-488 3-237 (316)
275 3v64_C Agrin; beta propeller, 98.8 1.6E-05 5.6E-10 77.1 30.8 231 240-486 37-272 (349)
276 3p5b_L Low density lipoprotein 98.7 4.2E-05 1.4E-09 75.7 32.9 243 208-465 85-337 (400)
277 3v65_B Low-density lipoprotein 98.7 1E-05 3.6E-10 79.7 28.5 224 250-487 89-316 (386)
278 4a0p_A LRP6, LRP-6, low-densit 98.7 0.00045 1.6E-08 72.3 53.6 365 83-490 38-509 (628)
279 3tc9_A Hypothetical hydrolase; 98.7 7.1E-06 2.4E-10 82.0 27.5 242 238-487 138-428 (430)
280 3tc9_A Hypothetical hydrolase; 98.7 8.3E-06 2.8E-10 81.6 27.2 235 143-392 138-429 (430)
281 3p5b_L Low density lipoprotein 98.7 6.5E-05 2.2E-09 74.3 32.8 244 94-369 84-338 (400)
282 4hw6_A Hypothetical protein, I 98.7 1.1E-05 3.7E-10 80.7 26.7 234 143-392 140-432 (433)
283 2xe4_A Oligopeptidase B; hydro 98.7 5.9E-06 2E-10 89.3 26.3 197 86-310 225-459 (751)
284 3sov_A LRP-6, low-density lipo 98.7 4.1E-05 1.4E-09 73.0 29.1 234 95-359 6-246 (318)
285 3ei3_A DNA damage-binding prot 98.6 0.0015 5E-08 73.3 45.4 215 259-487 808-1060(1158)
286 3sov_A LRP-6, low-density lipo 98.6 8.8E-05 3E-09 70.7 30.4 246 208-469 6-260 (318)
287 3ei3_A DNA damage-binding prot 98.6 0.0018 6.2E-08 72.5 51.0 429 7-489 487-999 (1158)
288 3m0c_C LDL receptor, low-densi 98.6 0.00012 4.1E-09 78.5 33.3 249 208-470 397-655 (791)
289 4hw6_A Hypothetical protein, I 98.5 5.7E-05 2E-09 75.4 27.4 240 238-487 140-431 (433)
290 2xbg_A YCF48-like protein; pho 98.5 0.00039 1.3E-08 66.7 31.3 267 196-486 37-319 (327)
291 3qqz_A Putative uncharacterize 98.5 0.00012 4E-09 66.5 25.6 200 83-306 28-250 (255)
292 3qqz_A Putative uncharacterize 98.5 8.2E-05 2.8E-09 67.5 24.3 203 276-486 25-250 (255)
293 3m0c_C LDL receptor, low-densi 98.4 0.00032 1.1E-08 75.1 31.3 224 104-358 404-639 (791)
294 3kya_A Putative phosphatase; s 98.4 0.00024 8.4E-09 70.9 27.9 255 196-452 140-480 (496)
295 3amr_A 3-phytase; beta-propell 98.4 0.00018 6.2E-09 67.7 24.6 202 247-455 39-272 (355)
296 3kya_A Putative phosphatase; s 98.4 0.00016 5.3E-09 72.3 25.6 240 143-393 140-475 (496)
297 2xbg_A YCF48-like protein; pho 98.3 0.0026 8.9E-08 60.9 32.1 268 145-444 39-319 (327)
298 1n7d_A LDL receptor, low-densi 98.2 6.6E-06 2.3E-10 87.6 12.1 214 145-370 409-633 (699)
299 1n7d_A LDL receptor, low-densi 98.2 1.6E-05 5.3E-10 84.8 13.6 218 257-488 385-613 (699)
300 2ism_A Putative oxidoreductase 98.1 0.0012 4.2E-08 63.9 25.3 225 145-381 34-333 (352)
301 3amr_A 3-phytase; beta-propell 98.1 0.0012 4E-08 62.3 23.8 192 152-359 39-272 (355)
302 2xzh_A Clathrin heavy chain 1; 98.1 0.006 2E-07 56.3 31.3 253 104-392 49-331 (365)
303 2p9w_A MAL S 1 allergenic prot 98.0 0.0055 1.9E-07 57.2 26.6 157 233-392 9-214 (334)
304 3a9g_A Putative uncharacterize 98.0 0.006 2.1E-07 58.9 28.4 227 145-381 32-330 (354)
305 2ism_A Putative oxidoreductase 98.0 0.009 3.1E-07 57.7 28.9 232 237-478 31-333 (352)
306 3s25_A Hypothetical 7-bladed b 98.0 0.0098 3.4E-07 55.8 27.1 245 203-487 22-291 (302)
307 2p9w_A MAL S 1 allergenic prot 97.9 0.0062 2.1E-07 56.8 24.9 202 145-351 16-265 (334)
308 3sre_A PON1, serum paraoxonase 97.9 0.0021 7.1E-08 61.5 22.1 205 238-455 51-308 (355)
309 3s25_A Hypothetical 7-bladed b 97.9 0.0076 2.6E-07 56.5 25.6 210 149-392 21-254 (302)
310 2xzh_A Clathrin heavy chain 1; 97.9 0.014 4.8E-07 53.9 31.6 264 215-488 48-331 (365)
311 1bpo_A Protein (clathrin); cla 97.9 0.02 6.8E-07 55.1 32.4 255 103-392 47-330 (494)
312 2vpj_A Kelch-like protein 12; 97.9 0.0019 6.5E-08 61.1 21.2 228 92-353 14-280 (301)
313 3sbq_A Nitrous-oxide reductase 97.9 0.02 6.7E-07 56.9 27.7 308 155-478 72-453 (638)
314 3a9g_A Putative uncharacterize 97.8 0.028 9.6E-07 54.2 29.2 232 237-478 29-330 (354)
315 2vpj_A Kelch-like protein 12; 97.8 0.002 6.9E-08 60.9 19.8 222 152-392 14-277 (301)
316 2g8s_A Glucose/sorbosone dehyd 97.8 0.034 1.2E-06 53.6 28.2 230 145-380 21-340 (353)
317 3ii7_A Kelch-like protein 7; p 97.7 0.0098 3.4E-07 56.2 23.9 226 94-353 13-274 (306)
318 2xn4_A Kelch-like protein 2; s 97.7 0.0049 1.7E-07 58.2 21.7 228 92-353 15-278 (302)
319 2g8s_A Glucose/sorbosone dehyd 97.7 0.036 1.2E-06 53.4 27.7 245 237-487 18-350 (353)
320 3ii7_A Kelch-like protein 7; p 97.7 0.0051 1.7E-07 58.2 21.2 225 207-449 13-274 (306)
321 3das_A Putative oxidoreductase 97.7 0.042 1.4E-06 52.2 27.5 230 145-381 35-326 (347)
322 2xn4_A Kelch-like protein 2; s 97.6 0.0062 2.1E-07 57.5 20.3 221 153-392 16-275 (302)
323 1zgk_A Kelch-like ECH-associat 97.5 0.0085 2.9E-07 56.7 20.2 233 87-353 19-289 (308)
324 3sre_A PON1, serum paraoxonase 97.5 0.011 3.7E-07 56.5 20.6 223 146-376 54-327 (355)
325 4asc_A Kelch repeat and BTB do 97.5 0.025 8.5E-07 53.6 22.6 177 208-392 7-220 (315)
326 3ott_A Two-component system se 97.4 0.19 6.6E-06 54.2 51.9 432 2-488 63-544 (758)
327 1bpo_A Protein (clathrin); cla 97.4 0.1 3.4E-06 50.4 34.7 264 215-488 47-330 (494)
328 4asc_A Kelch repeat and BTB do 97.4 0.014 4.8E-07 55.4 19.4 183 155-355 7-225 (315)
329 1zgk_A Kelch-like ECH-associat 97.3 0.015 5E-07 55.1 19.0 230 202-450 21-290 (308)
330 1cru_A Protein (soluble quinop 97.3 0.17 5.9E-06 50.5 32.4 103 237-339 27-162 (454)
331 3pbp_A Nucleoporin NUP82; beta 97.3 0.03 1E-06 53.9 19.8 112 322-443 67-208 (452)
332 3das_A Putative oxidoreductase 97.2 0.15 5.1E-06 48.5 28.5 237 235-478 30-326 (347)
333 3ott_A Two-component system se 97.2 0.33 1.1E-05 52.4 49.4 355 83-487 64-446 (758)
334 1cru_A Protein (soluble quinop 97.2 0.22 7.4E-06 49.7 28.8 109 145-256 30-163 (454)
335 2woz_A Kelch repeat and BTB do 97.2 0.087 3E-06 49.9 22.7 224 94-354 17-290 (318)
336 2woz_A Kelch repeat and BTB do 97.1 0.045 1.6E-06 51.9 19.5 182 155-354 18-234 (318)
337 2uvk_A YJHT; unknown function, 97.1 0.043 1.5E-06 53.1 19.4 236 92-359 19-350 (357)
338 1xi4_A Clathrin heavy chain; a 97.0 0.11 3.6E-06 58.1 22.7 254 104-392 48-330 (1630)
339 2uvk_A YJHT; unknown function, 96.8 0.11 3.8E-06 50.1 20.2 226 152-392 19-341 (357)
340 1xi4_A Clathrin heavy chain; a 96.8 0.11 3.7E-06 58.1 21.2 264 215-488 47-330 (1630)
341 3pbp_A Nucleoporin NUP82; beta 96.7 0.18 6E-06 48.7 19.4 153 89-261 28-206 (452)
342 2be1_A Serine/threonine-protei 96.5 0.018 6.1E-07 54.5 11.2 114 154-277 11-140 (339)
343 3sbq_A Nitrous-oxide reductase 96.3 0.86 2.9E-05 45.5 22.0 254 208-488 72-407 (638)
344 1tl2_A L10, protein (tachylect 96.1 0.4 1.4E-05 41.6 16.4 102 278-387 41-157 (236)
345 2zwa_A Leucine carboxyl methyl 96.1 0.51 1.8E-05 50.1 20.8 197 151-355 396-639 (695)
346 1tl2_A L10, protein (tachylect 95.9 0.14 4.8E-06 44.5 12.4 145 237-392 41-207 (236)
347 2be1_A Serine/threonine-protei 95.8 0.12 4.2E-06 48.8 13.0 112 249-360 11-139 (339)
348 2zwa_A Leucine carboxyl methyl 95.5 0.71 2.4E-05 49.0 19.0 189 204-393 396-635 (695)
349 2wg3_C Hedgehog-interacting pr 93.4 6.7 0.00023 38.9 29.9 114 144-257 16-159 (463)
350 3q6k_A 43.2 kDa salivary prote 93.3 5.8 0.0002 37.9 24.7 192 258-476 123-340 (381)
351 3uc1_A DNA gyrase subunit A; D 93.0 5.9 0.0002 37.2 24.3 206 39-266 52-278 (327)
352 3qhy_B Beta-lactamase inhibito 92.2 6.9 0.00024 35.8 17.3 218 145-392 27-245 (282)
353 1zi0_A DNA gyrase subunit A; b 91.4 8.9 0.0003 35.6 24.8 192 11-224 1-225 (307)
354 3q6k_A 43.2 kDa salivary prote 90.6 12 0.00042 35.7 23.0 150 105-267 124-306 (381)
355 4hvt_A Ritya.17583.B, post-pro 90.5 20 0.00067 37.9 20.4 94 214-308 318-429 (711)
356 3l6v_A GYRA, DNA gyrase subuni 90.5 12 0.00043 35.6 23.7 145 9-172 3-180 (370)
357 1wp5_A Topoisomerase IV; broke 90.3 12 0.0004 35.0 24.7 193 11-225 3-225 (323)
358 4hvt_A Ritya.17583.B, post-pro 89.9 22 0.00075 37.5 22.9 240 240-487 132-428 (711)
359 1suu_A DNA gyrase subunit A; t 89.8 13 0.00043 34.6 25.4 194 10-225 5-231 (312)
360 3l6v_A GYRA, DNA gyrase subuni 88.6 17 0.00059 34.6 25.1 150 246-398 5-185 (370)
361 2wg3_C Hedgehog-interacting pr 88.1 22 0.00075 35.2 25.6 102 196-297 15-158 (463)
362 1suu_A DNA gyrase subunit A; t 86.0 22 0.00074 33.0 26.8 192 204-397 6-235 (312)
363 3b7f_A Glycosyl hydrolase, BNR 85.6 26 0.00091 33.7 29.8 215 238-468 116-391 (394)
364 3no0_A DNA gyrase subunit A; D 84.8 23 0.00077 32.2 19.4 111 331-446 79-195 (276)
365 4gq2_M Nucleoporin NUP120; bet 83.3 20 0.00067 39.5 15.3 39 142-180 236-274 (950)
366 3zwu_A Alkaline phosphatase PH 82.0 5.2 0.00018 40.9 9.3 59 419-477 479-548 (592)
367 1zi0_A DNA gyrase subunit A; b 78.8 41 0.0014 31.1 25.2 192 247-445 2-224 (307)
368 4a9v_A PHOX; hydrolase, beta-p 77.4 11 0.00038 38.1 9.7 60 419-478 479-549 (592)
369 3qhy_B Beta-lactamase inhibito 75.9 46 0.0016 30.2 17.5 180 145-351 66-246 (282)
370 3b7f_A Glycosyl hydrolase, BNR 74.9 60 0.0021 31.1 27.9 179 207-389 23-258 (394)
371 1wp5_A Topoisomerase IV; broke 68.1 77 0.0026 29.4 26.1 189 204-394 3-226 (323)
372 3zwu_A Alkaline phosphatase PH 63.4 26 0.0009 35.8 9.1 59 85-159 479-548 (592)
373 4fhn_B Nucleoporin NUP120; pro 62.7 16 0.00054 41.3 8.1 38 143-180 239-276 (1139)
374 3f7f_A Nucleoporin NUP120; nuc 60.7 63 0.0021 33.8 11.3 37 143-181 223-259 (729)
375 1zvt_A Topoisomerase IV subuni 57.5 1E+02 0.0036 27.4 12.8 150 334-489 4-163 (256)
376 3uc1_A DNA gyrase subunit A; D 55.6 1.3E+02 0.0045 27.9 24.6 188 207-396 4-231 (327)
377 3kci_A Probable E3 ubiquitin-p 52.6 1.6E+02 0.0055 28.0 30.1 185 207-396 63-296 (389)
378 4a9v_A PHOX; hydrolase, beta-p 51.0 78 0.0027 32.1 9.8 61 83-160 477-549 (592)
379 2cn3_A Xyloglucanase, beta-1,4 46.3 2.9E+02 0.0098 29.1 25.1 58 238-296 24-91 (737)
380 3f7f_A Nucleoporin NUP120; nuc 44.0 3E+02 0.01 28.8 16.8 36 239-276 224-259 (729)
381 3no0_A DNA gyrase subunit A; D 43.0 1.9E+02 0.0064 26.0 23.2 195 39-265 34-244 (276)
382 1sqj_A OXG-RCBH, oligoxylogluc 39.3 3.8E+02 0.013 28.5 26.1 144 196-341 16-190 (789)
383 4fhn_B Nucleoporin NUP120; pro 38.0 4.7E+02 0.016 29.3 18.6 37 418-455 240-276 (1139)
384 4gq2_M Nucleoporin NUP120; bet 37.1 4.5E+02 0.015 28.7 24.3 38 238-275 237-274 (950)
385 1sqj_A OXG-RCBH, oligoxylogluc 27.6 5.8E+02 0.02 27.1 24.9 151 143-299 16-190 (789)
386 3mez_B Mannose-specific lectin 26.8 2E+02 0.0068 21.5 9.9 25 366-392 59-83 (113)
387 3mez_B Mannose-specific lectin 20.3 2.7E+02 0.0093 20.7 7.4 25 463-488 59-83 (113)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.5e-59 Score=495.85 Aligned_cols=437 Identities=16% Similarity=0.232 Sum_probs=350.8
Q ss_pred CCcceEEEEccCCcEEEeccCCCeEEEEeccccce--e---------------cccCceEEeecCC----ceEEEeechh
Q psy2110 1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL--K---------------ASRGNCLLVNTGD----RLIRVYNHQE 59 (622)
Q Consensus 1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~--~---------------~~~~~~l~~~~~d----~~i~~w~~~~ 59 (622)
++.|++++|||||++||+|+.||+|+|||+...+. . .+++++|++++.+ +.|++|+...
T Consensus 59 ~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~ 138 (611)
T 1nr0_A 59 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 138 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC
T ss_pred CCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC
Confidence 36799999999999999999999999999854211 0 4467888887764 5899998532
Q ss_pred hhhcCCCCCCccchhhhhhc-cccceeEEEEcCCCC-EEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCc
Q psy2110 60 VLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGE-YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGA 137 (622)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~-~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 137 (622)
.. ..+. +...+.+++|+|++. .|++++.| ++|++||..++++...+.+|...|
T Consensus 139 -----------~~---~~l~gh~~~v~~v~f~p~~~~~l~s~s~D-~~v~lwd~~~~~~~~~l~~H~~~V---------- 193 (611)
T 1nr0_A 139 -----------SN---GNLTGQARAMNSVDFKPSRPFRIISGSDD-NTVAIFEGPPFKFKSTFGEHTKFV---------- 193 (611)
T ss_dssp -----------BC---BCCCCCSSCEEEEEECSSSSCEEEEEETT-SCEEEEETTTBEEEEEECCCSSCE----------
T ss_pred -----------Cc---ceecCCCCCceEEEECCCCCeEEEEEeCC-CeEEEEECCCCeEeeeeccccCce----------
Confidence 11 1122 345678999999997 48888865 999999999999999999999988
Q ss_pred cccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe
Q psy2110 138 LDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217 (622)
Q Consensus 138 ~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 217 (622)
++++|+|++++||+|+.|++|++||+.+++....+...... ...+...|.+++|+|+|++|++++.|++
T Consensus 194 -------~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~----~~~h~~~V~~v~~spdg~~l~s~s~D~~ 262 (611)
T 1nr0_A 194 -------HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK----NVAHSGSVFGLTWSPDGTKIASASADKT 262 (611)
T ss_dssp -------EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS----SCSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred -------EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccc----ccccCCCEEEEEECCCCCEEEEEeCCCe
Confidence 59999999999999999999999999988777665321000 0011146899999999999999999999
Q ss_pred EEEEEcCCCceEE-------------------------------------------EeccCCcCeeEEEEcCCCCEEEEE
Q psy2110 218 IVLWDFLTRGIAK-------------------------------------------IISAHMHPVCSISWSRNGYKIISA 254 (622)
Q Consensus 218 i~iwd~~~~~~~~-------------------------------------------~~~~~~~~v~~~~~s~~~~~l~s~ 254 (622)
|++||+.+++++. .+.+|...|++++|+|+|++|+++
T Consensus 263 v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~ 342 (611)
T 1nr0_A 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSA 342 (611)
T ss_dssp EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 9999998766543 345789999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee-------------------
Q psy2110 255 STDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI------------------- 313 (622)
Q Consensus 255 ~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------------------- 313 (622)
+.|++|++||+.++++...+. |...+.+++|++++ .+++++.++.+++|+.......
T Consensus 343 s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s 420 (611)
T 1nr0_A 343 DAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS 420 (611)
T ss_dssp ETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEEC
T ss_pred eCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC--cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEe
Confidence 999999999999998877653 77889999999876 4778889999999987543210
Q ss_pred ----------------------ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE--EEEEecCCCCEEEEE
Q psy2110 314 ----------------------VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL--KASFKASTTAIKSIE 369 (622)
Q Consensus 314 ----------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~ 369 (622)
..+ .+...+.+++|+|+|++|++|+.|+.|++||+.++.. +.. ..|...|++++
T Consensus 421 ~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~ 498 (611)
T 1nr0_A 421 ADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA 498 (611)
T ss_dssp TTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE
T ss_pred CCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE
Confidence 000 1345578899999999999999999999999987653 233 68999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe
Q psy2110 370 FARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN 449 (622)
Q Consensus 370 ~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~ 449 (622)
|+|+|++|++++.|+.|++|++... ...........+...+.+++|+|||++||+++. |++|++|++.++.
T Consensus 499 fspdg~~las~s~d~~v~~w~~~~~--------~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~-D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 499 FSNNGAFLVATDQSRKVIPYSVANN--------FELAHTNSWTFHTAKVACVSWSPDNVRLATGSL-DNSVIVWNMNKPS 569 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEEGGGT--------TEESCCCCCCCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTCTT
T ss_pred ECCCCCEEEEEcCCCCEEEEEcCCC--------CceeeeeeeeecccceeEEEECCCCCEEEEEEC-CCcEEEEECCCcc
Confidence 9999999999999999999999731 111111001113456789999999999999997 9999999998765
Q ss_pred -eE-EEEecC-CCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110 450 -LV-KILHGT-KGELLLDVVWHPVRPIIASIS-SGVVSLWAQN 488 (622)
Q Consensus 450 -~~-~~~~~~-~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~ 488 (622)
.+ ..+.+| .+. |++++|+|+++ |++++ |++|++|++.
T Consensus 570 ~~~~~~~~~h~~~~-v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 570 DHPIIIKGAHAMSS-VNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCCEEETTSSTTSC-EEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred cccchhhccCcccC-eeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 33 567788 555 99999999998 99998 9999999973
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.6e-58 Score=486.28 Aligned_cols=455 Identities=20% Similarity=0.363 Sum_probs=364.8
Q ss_pred CCcceEEEEccCCcEEEeccCCCeEEEEecccccee--------------cccCceEEeecCCceEEEeechhhhhcCCC
Q psy2110 1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK--------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKD 66 (622)
Q Consensus 1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~--------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 66 (622)
++.|+|++|||||++||+|+.||+|+|||.....+. .+++++|++++.|++|++||..........
T Consensus 16 ~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~ 95 (577)
T 2ymu_A 16 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 95 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEE
Confidence 478999999999999999999999999997543221 457899999999999999997532211111
Q ss_pred CCCccchhh----------------------------------------------------------------------h
Q psy2110 67 GDPEPIQKL----------------------------------------------------------------------Q 76 (622)
Q Consensus 67 ~~~~~~~~~----------------------------------------------------------------------~ 76 (622)
++...+..+ .
T Consensus 96 ~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (577)
T 2ymu_A 96 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 175 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeee
Confidence 111110000 0
Q ss_pred hhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110 77 DLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL 156 (622)
Q Consensus 77 ~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 156 (622)
...+...+.+++|+|++++|++++.+ +.|++||. +++.+..+.+|...+ .+++|+|++++|
T Consensus 176 ~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~~w~~-~~~~~~~~~~~~~~v-----------------~~~~~s~dg~~l 236 (577)
T 2ymu_A 176 LTGHSSSVWGVAFSPDGQTIASASDD-KTVKLWNR-NGQLLQTLTGHSSSV-----------------RGVAFSPDGQTI 236 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETT-SEEEEECT-TSCEEEEEECCSSCE-----------------EEEEECTTSSCE
T ss_pred ccCCCcceeeeeecCCCCEEEEEcCC-CEEEEEeC-CCcEEEEEecCCCCE-----------------EEEEECCCCCEE
Confidence 00112233455666666666666643 66666664 355666666666665 699999999999
Q ss_pred EEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110 157 AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM 236 (622)
Q Consensus 157 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 236 (622)
++++.|+.|++|+.. ++.+..+..+. ..|.+++|+|+++.|++++.++.|++|+. +++....+.+|.
T Consensus 237 ~~~~~d~~i~~w~~~-~~~~~~~~~~~-----------~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~ 303 (577)
T 2ymu_A 237 ASASDDKTVKLWNRN-GQLLQTLTGHS-----------SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 303 (577)
T ss_dssp EEEETTSCEEEECTT-SCEEEEECCCS-----------SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCS
T ss_pred EEEeCCCEEEEEeCC-CCEEEEEecCC-----------CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCC
Confidence 999999999999964 45555555554 35899999999999999999999999996 567788899999
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316 (622)
Q Consensus 237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 316 (622)
..|.+++|+|++++|++++.|+.|++||+..........+...+.+++|+|++. .+++++.++.+++|+. +...+..+
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~-~~~~~~~~ 381 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTL 381 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEET-TCCEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcC-CCCEEEEe
Confidence 999999999999999999999999999987665544445888999999999987 5778889999999995 45667778
Q ss_pred cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccc
Q psy2110 317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLN 396 (622)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 396 (622)
..|...+.+++|+|++++|++++.|+.|++||. +++.+..+..|...|++++|+|++++|++++.|+.|++||...
T Consensus 382 ~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--- 457 (577)
T 2ymu_A 382 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--- 457 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS---
T ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC---
Confidence 889999999999999999999999999999995 5788899999999999999999999999999999999999752
Q ss_pred cCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEE
Q psy2110 397 AGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIAS 476 (622)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s 476 (622)
..+..+..+ ...+.+++|+|+|++|++++. |+.|++||. +++++..+.+|... |++++|+|++++|++
T Consensus 458 -------~~~~~~~~~--~~~v~~~~~spd~~~las~~~-d~~i~iw~~-~~~~~~~~~~h~~~-v~~l~~s~dg~~l~s 525 (577)
T 2ymu_A 458 -------QLLQTLTGH--SSSVRGVAFSPDGQTIASASD-DKTVKLWNR-NGQLLQTLTGHSSS-VRGVAFSPDGQTIAS 525 (577)
T ss_dssp -------CEEEEEECC--SSCEEEEEECTTSCEEEEEET-TSEEEEEET-TSCEEEEEECCSSC-EEEEEECTTSSCEEE
T ss_pred -------CEEEEEcCC--CCCEEEEEEcCCCCEEEEEeC-CCEEEEEcC-CCCEEEEEeCCCCC-EEEEEEcCCCCEEEE
Confidence 344444443 345688999999999999997 999999995 68889999999887 999999999999999
Q ss_pred Ee-CCcEEEeecCCcc----------cc-cccCCCCceecc
Q psy2110 477 IS-SGVVSLWAQNQVE----------NW-SAFAPDFKELDE 505 (622)
Q Consensus 477 ~~-dg~v~iw~~~~~~----------~~-~~~s~~~~~l~~ 505 (622)
++ ||.|++|+..+.. .+ .+|+||++.|+.
T Consensus 526 ~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s 566 (577)
T 2ymu_A 526 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 566 (577)
T ss_dssp EETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred EECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 99 9999999976321 11 278888887764
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.1e-57 Score=483.74 Aligned_cols=433 Identities=16% Similarity=0.241 Sum_probs=354.4
Q ss_pred CcceEEEEccCCcEEEeccCCCeEEEEecccccee---------------cccCceEEeecCCceEEEeechhhhhcCCC
Q psy2110 2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKD 66 (622)
Q Consensus 2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 66 (622)
..+.+++|||||++||+++ ++.|+||++...+.. .++|++|++++.|++|++||+....
T Consensus 19 g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~----- 92 (611)
T 1nr0_A 19 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT----- 92 (611)
T ss_dssp TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT-----
T ss_pred CceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc-----
Confidence 3578899999999999987 579999998754222 5689999999999999999985211
Q ss_pred CCCccchhhhhhccccceeEEEEcCCCCEEEEecCCC---CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccc
Q psy2110 67 GDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQ---HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISL 143 (622)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 143 (622)
.........+...+.+++|+|+|++|++++.++ +.|++|| +++....+.+|...|
T Consensus 93 ----~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v---------------- 150 (611)
T 1nr0_A 93 ----HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM---------------- 150 (611)
T ss_dssp ----CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE----------------
T ss_pred ----ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCc----------------
Confidence 000111112345688999999999999987542 3566665 677778889999988
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110 144 AVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD 222 (622)
Q Consensus 144 v~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd 222 (622)
++++|+|++. +|++|+.|++|++||..+++....+..|. ..|.+++|+|+|++|++++.|+.|++||
T Consensus 151 -~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~-----------~~V~~v~fspdg~~las~s~D~~i~lwd 218 (611)
T 1nr0_A 151 -NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT-----------KFVHSVRYNPDGSLFASTGGDGTIVLYN 218 (611)
T ss_dssp -EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCS-----------SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred -eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecccc-----------CceEEEEECCCCCEEEEEECCCcEEEEE
Confidence 5999999987 69999999999999998888777777665 3589999999999999999999999999
Q ss_pred cCCCceEEEec-------cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC----CCeEEEEEeCCCCe
Q psy2110 223 FLTRGIAKIIS-------AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP----SPILKVQFHPRNDH 291 (622)
Q Consensus 223 ~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~ 291 (622)
+.+++....+. +|.+.|.+++|+|++++|++++.|++|++||+.++++...+... .....+.| ++ .
T Consensus 219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~ 295 (611)
T 1nr0_A 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TK-Q 295 (611)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CS-S
T ss_pred CCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cC-C
Confidence 99999888884 79999999999999999999999999999999999998888633 34556666 33 3
Q ss_pred EEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEE-e-----------
Q psy2110 292 MFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF-K----------- 359 (622)
Q Consensus 292 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~----------- 359 (622)
.+++++.++.+++|+.........+.+|...+.+++|+|+|++|++++.|+.|++||+.+++....+ .
T Consensus 296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~ 375 (611)
T 1nr0_A 296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 375 (611)
T ss_dssp CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEE
T ss_pred EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEE
Confidence 6888999999999999988888888899999999999999999999999999999998876543321 0
Q ss_pred ----------------------------------------------------------------------cCCCCEEEEE
Q psy2110 360 ----------------------------------------------------------------------ASTTAIKSIE 369 (622)
Q Consensus 360 ----------------------------------------------------------------------~~~~~i~~~~ 369 (622)
.|...+.+++
T Consensus 376 s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va 455 (611)
T 1nr0_A 376 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVA 455 (611)
T ss_dssp CTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEE
T ss_pred CCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEE
Confidence 1234567899
Q ss_pred EcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC-C
Q psy2110 370 FARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV-G 448 (622)
Q Consensus 370 ~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~-~ 448 (622)
|+|+|++|++++.|+.|++||+.. . .........+...+.+++|||||++|++++. |+.|++|++.+ +
T Consensus 456 ~spdg~~lasgs~D~~v~lwd~~~---------~-~~~~~~~~~h~~~v~~v~fspdg~~las~s~-d~~v~~w~~~~~~ 524 (611)
T 1nr0_A 456 LSNDKQFVAVGGQDSKVHVYKLSG---------A-SVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVANNF 524 (611)
T ss_dssp ECTTSCEEEEEETTSEEEEEEEET---------T-EEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEEGGGTT
T ss_pred EeCCCCEEEEeCCCCeEEEEEccC---------C-ceeeeeccCCCCceEEEEECCCCCEEEEEcC-CCCEEEEEcCCCC
Confidence 999999999999999999999873 1 1111111223456789999999999999997 99999999987 6
Q ss_pred eeEEE--EecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110 449 NLVKI--LHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ 489 (622)
Q Consensus 449 ~~~~~--~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~ 489 (622)
+++.. +.+|... |++++|+|++++|++++ |++|++|++..
T Consensus 525 ~~~~~~~~~~H~~~-V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 525 ELAHTNSWTFHTAK-VACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp EESCCCCCCCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred ceeeeeeeeecccc-eeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 65544 3347766 99999999999999999 99999999864
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.4e-56 Score=470.53 Aligned_cols=435 Identities=21% Similarity=0.382 Sum_probs=357.1
Q ss_pred CCcceEEEEccCCcEEEeccCCCeEEEEecccccee--------------cccCceEEeecCCceEEEeechhhhhcC--
Q psy2110 1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK--------------ASRGNCLLVNTGDRLIRVYNHQEVLNAG-- 64 (622)
Q Consensus 1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~--------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~-- 64 (622)
+..|++++|||||++||+|+.|++|+|||.....+. .+++++|++++.|+.+++|+........
T Consensus 57 ~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~ 136 (577)
T 2ymu_A 57 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeecc
Confidence 357899999999999999999999999997543211 3355666666666666666532110000
Q ss_pred -----------------------------------------------------CCCC-------C-------ccchhhhh
Q psy2110 65 -----------------------------------------------------KDGD-------P-------EPIQKLQD 77 (622)
Q Consensus 65 -----------------------------------------------------~~~~-------~-------~~~~~~~~ 77 (622)
..+. . .....+..
T Consensus 137 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~ 216 (577)
T 2ymu_A 137 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 216 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEE
T ss_pred CCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEE
Confidence 0000 0 00011122
Q ss_pred hc-cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110 78 LV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL 156 (622)
Q Consensus 78 ~~-~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 156 (622)
+. +...+.+++|+|++++|++++.+ +.|++||. +++.+..+.+|...+ .+++|+|++++|
T Consensus 217 ~~~~~~~v~~~~~s~dg~~l~~~~~d-~~i~~w~~-~~~~~~~~~~~~~~v-----------------~~v~~~~d~~~l 277 (577)
T 2ymu_A 217 LTGHSSSVRGVAFSPDGQTIASASDD-KTVKLWNR-NGQLLQTLTGHSSSV-----------------NGVAFRPDGQTI 277 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETT-SCEEEECT-TSCEEEEECCCSSCE-----------------EEEEECTTSSEE
T ss_pred EecCCCCEEEEEECCCCCEEEEEeCC-CEEEEEeC-CCCEEEEEecCCCCE-----------------EEEEEcCCCCEE
Confidence 22 34567799999999999999975 99999996 578888999999888 599999999999
Q ss_pred EEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110 157 AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM 236 (622)
Q Consensus 157 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 236 (622)
++++.|+.|++|+.. ++....+..|. ..|.+++|+|++++|++++.|+.|++|++.. ..+..+.+|.
T Consensus 278 ~~~~~d~~i~~w~~~-~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~ 344 (577)
T 2ymu_A 278 ASASDDKTVKLWNRN-GQLLQTLTGHS-----------SSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHS 344 (577)
T ss_dssp EEEETTSCEEEEETT-SCEEEEECCCS-----------SCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCS
T ss_pred EEEeCCCEEEEEeCC-CcEEEEEecCC-----------CCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCC
Confidence 999999999999964 45555555554 3589999999999999999999999999754 4567788999
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP 315 (622)
Q Consensus 237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 315 (622)
..+.+++|+|++++|++++.|+.|++||. +++.+..+. +...|.+++|+|+++ ++++++.++.+++||. +.+.+..
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~-~~~~~~~ 421 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT 421 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TCCEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeC-CCCEEEE
Confidence 99999999999999999999999999995 566666665 788999999999987 5778889999999995 4566777
Q ss_pred ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccc
Q psy2110 316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVL 395 (622)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~ 395 (622)
+..|...+.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||...
T Consensus 422 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-- 498 (577)
T 2ymu_A 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-- 498 (577)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--
T ss_pred ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--
Confidence 8889999999999999999999999999999996 5788889999999999999999999999999999999999652
Q ss_pred ccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEE
Q psy2110 396 NAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIA 475 (622)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 475 (622)
..+..+..+ ...+.+++|+|||++|++++. |+.|++||. +++++..+.+|.+. |++++|+|++++|+
T Consensus 499 --------~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~-dg~v~lwd~-~~~~~~~~~~h~~~-v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 499 --------QLLQTLTGH--SSSVRGVAFSPDGQTIASASD-DKTVKLWNR-NGQLLQTLTGHSSS-VWGVAFSPDGQTIA 565 (577)
T ss_dssp --------CEEEEEECC--SSCEEEEEECTTSSCEEEEET-TSEEEEECT-TSCEEEEEECCSSC-EEEEEECTTSSCEE
T ss_pred --------CEEEEEeCC--CCCEEEEEEcCCCCEEEEEEC-cCEEEEEeC-CCCEEEEEcCCCCC-EEEEEEcCCCCEEE
Confidence 445555543 345788999999999999997 999999996 68899999999987 99999999999999
Q ss_pred EEe-CCcEEEee
Q psy2110 476 SIS-SGVVSLWA 486 (622)
Q Consensus 476 s~~-dg~v~iw~ 486 (622)
+++ |++|++||
T Consensus 566 s~~~D~~i~~Wd 577 (577)
T 2ymu_A 566 SASSDKTVKLWN 577 (577)
T ss_dssp EEETTSCEEEEC
T ss_pred EEeCCCEEEEeC
Confidence 999 99999997
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.7e-52 Score=478.42 Aligned_cols=443 Identities=16% Similarity=0.234 Sum_probs=372.5
Q ss_pred CCcceEEEEccCCcEEEeccCCCeEEEEecccccee---------------cccCceEEeecCCceEEEeechhhhhcCC
Q psy2110 1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGK 65 (622)
Q Consensus 1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 65 (622)
++.|++++|||||++||+|+.||+|+|||+.+.+.. .++++++++++.|+.|++||+.+.
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----- 689 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG----- 689 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC-----
Confidence 368999999999999999999999999999876443 457889999999999999998642
Q ss_pred CCCCccchhhhhh-ccccceeEEEEcC--CCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCcccccc
Q psy2110 66 DGDPEPIQKLQDL-VNKTMWKKCCFSG--DGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCIS 142 (622)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~~~~~~~~sp--~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 142 (622)
+.+..+ .+...+.+++|+| ++.++++++.+ +.|++||+.+++++..+.+|.+.+
T Consensus 690 -------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d-~~v~vwd~~~~~~~~~~~~h~~~v--------------- 746 (1249)
T 3sfz_A 690 -------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND-FFLKLWDLNQKECRNTMFGHTNSV--------------- 746 (1249)
T ss_dssp -------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETT-SCEEEEETTSSSEEEEECCCSSCE---------------
T ss_pred -------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCC-CeEEEEECCCcchhheecCCCCCE---------------
Confidence 122222 2445678999999 55578888865 999999999999999999999988
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCC-------------------cc---------------
Q psy2110 143 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPE-------------------FD--------------- 188 (622)
Q Consensus 143 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~-------------------~~--------------- 188 (622)
++++|+|++++|++++.||.|++||+.++.....+....... ..
T Consensus 747 --~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 747 --NHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp --EEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred --EEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 599999999999999999999999998875544332111000 00
Q ss_pred ----------cccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCC
Q psy2110 189 ----------GALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDN 258 (622)
Q Consensus 189 ----------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 258 (622)
........+.+++|+|+++++++++.++.|++|++.++.....+.+|...|.+++|+|++++|++++.|+
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg 904 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ 904 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence 0001234678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCcE-----------------------------E---------EEEeCCCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110 259 NVCIWDVLTGEC-----------------------------E---------QKYRFPSPILKVQFHPRNDHMFLVCPMRH 300 (622)
Q Consensus 259 ~i~iwd~~~~~~-----------------------------~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 300 (622)
.|++|++.+... . ........+.+++|+|++. ++++++.++
T Consensus 905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~g~~~g 983 (1249)
T 3sfz_A 905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDG 983 (1249)
T ss_dssp CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS-EEEEEETTS
T ss_pred eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC-EEEEEcCCC
Confidence 999999653100 0 0112356789999999987 678889999
Q ss_pred cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy2110 301 AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN 380 (622)
Q Consensus 301 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 380 (622)
.+++|++.+......+..|...+.+++|+|+|+++++++.||.|++||+.+++.. .+..|...|.+++|+|++ .++++
T Consensus 984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~ 1061 (1249)
T 3sfz_A 984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSW 1061 (1249)
T ss_dssp CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEE
T ss_pred CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEE
Confidence 9999999999988889999999999999999999999999999999999998766 456889999999999976 47889
Q ss_pred eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCC
Q psy2110 381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE 460 (622)
Q Consensus 381 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 460 (622)
+.|+.|++||+. .......+..+. ..+.+++|+|+|+++++++. |+.|++||+.+++++..+.+|.+.
T Consensus 1062 ~~dg~v~vwd~~---------~~~~~~~~~~~~--~~v~~~~~s~d~~~l~s~s~-d~~v~iwd~~~~~~~~~l~~h~~~ 1129 (1249)
T 3sfz_A 1062 SFDGTVKVWNVI---------TGRIERDFTCHQ--GTVLSCAISSDATKFSSTSA-DKTAKIWSFDLLSPLHELKGHNGC 1129 (1249)
T ss_dssp ESSSEEEEEETT---------TTCCCEEEECCS--SCCCCEEECSSSSSCEEECC-SSCCCEECSSSSSCSBCCCCCSSC
T ss_pred ECCCcEEEEECC---------CCceeEEEcccC--CcEEEEEECCCCCEEEEEcC-CCcEEEEECCCcceeeeeccCCCc
Confidence 999999999998 334455554433 44678999999999999997 999999999999999999999887
Q ss_pred ceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110 461 LLLDVVWHPVRPIIASIS-SGVVSLWAQNQ 489 (622)
Q Consensus 461 ~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~ 489 (622)
|++++|+|++++|++++ ||.|++|++..
T Consensus 1130 -v~~~~~s~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1130 -VRCSAFSLDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp -EEEEEECSSSSEEEEEETTSCCCEEESSS
T ss_pred -EEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 99999999999999999 99999999874
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.8e-51 Score=438.29 Aligned_cols=439 Identities=13% Similarity=0.202 Sum_probs=352.6
Q ss_pred CcceEEEEccCCcEEEeccCCCeEEEEecccc----cee----------------cc--cCceEEeecCCceEEEeechh
Q psy2110 2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL----ELK----------------AS--RGNCLLVNTGDRLIRVYNHQE 59 (622)
Q Consensus 2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~----~~~----------------~~--~~~~l~~~~~d~~i~~w~~~~ 59 (622)
..|++++|||||++||+++ ++.|+||++.+. +.. .+ ++++|++++.|+.|++|++..
T Consensus 19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~ 97 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 97 (615)
T ss_dssp TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCC
Confidence 5789999999999999988 799999999765 221 45 788999999999999999953
Q ss_pred hhhcCCCCCCccchhhhhhc-cccceeEEEEcCCCCEEEEecCCC---CeEEEEEcCCCceEEEEeccCcceeEEEEeec
Q psy2110 60 VLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQ---HALYIWEKSVGNLVKILHGTKGELLLDVVEFD 135 (622)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~l~~~~~~~---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 135 (622)
..... ......+..+. +...+.+++|+|++++|++++.+. +.|++|| +++.+..+.+|...+
T Consensus 98 ~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v-------- 163 (615)
T 1pgu_A 98 DKESN----SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI-------- 163 (615)
T ss_dssp EGGGT----EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE--------
T ss_pred Ccccc----cccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE--------
Confidence 21000 00011122222 455678999999999999998642 5677776 788899999999988
Q ss_pred CccccccceeEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC-CCEEEEEe
Q psy2110 136 GALDCISLAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGC 213 (622)
Q Consensus 136 ~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~ 213 (622)
++++|+|+++ +|++++.|+.|++||+.+++....+..|.... ..|.+++|+|+ +++|++++
T Consensus 164 ---------~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~l~~~~ 226 (615)
T 1pgu_A 164 ---------NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG--------SFVRDVEFSPDSGEFVITVG 226 (615)
T ss_dssp ---------EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT--------CCEEEEEECSTTCCEEEEEE
T ss_pred ---------EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC--------ceEEEEEECCCCCCEEEEEe
Confidence 5999999998 89999999999999999988887777664310 14899999999 99999999
Q ss_pred CCCeEEEEEcCCCceEEEe-c---cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-----CCeEEEE
Q psy2110 214 NDGRIVLWDFLTRGIAKII-S---AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP-----SPILKVQ 284 (622)
Q Consensus 214 ~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~v~~~~ 284 (622)
.++.|++||+.+++.+..+ . .|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+... ..+.++.
T Consensus 227 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (615)
T 1pgu_A 227 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 305 (615)
T ss_dssp TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence 9999999999999999988 6 899999999999 9999999999999999999999999888854 6788888
Q ss_pred EeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEE------------------------------------
Q psy2110 285 FHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASF------------------------------------ 328 (622)
Q Consensus 285 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 328 (622)
|. ++. .+++++.++.+++||+.+...+..+..|...+.+++|
T Consensus 306 ~~-~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~ 383 (615)
T 1pgu_A 306 AT-GNG-RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA 383 (615)
T ss_dssp EE-ETT-EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCST
T ss_pred eC-CCC-eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCC
Confidence 86 444 6888889999999998765555444444333333222
Q ss_pred -------------------------------eeC--------------------------------------CCEEEEEe
Q psy2110 329 -------------------------------DRR--------------------------------------GQHVVTGN 339 (622)
Q Consensus 329 -------------------------------~~~--------------------------------------~~~l~~~~ 339 (622)
+|+ ++++++++
T Consensus 384 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (615)
T 1pgu_A 384 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 463 (615)
T ss_dssp TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEE
T ss_pred cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEee
Confidence 011 45566666
Q ss_pred c-CCeEEEEeCCCccEE-EEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecccccee
Q psy2110 340 S-KGKVLVLSCPALELK-ASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM 417 (622)
Q Consensus 340 ~-dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (622)
. +|.|++||+.+++.. ..+..|...|++++|+|++++|++++.|+.|++||+.. ...+..+.. .+...
T Consensus 464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~-~h~~~ 533 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS---------REVKTSRWA-FRTSK 533 (615)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------TEEEECCSC-CCSSC
T ss_pred cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC---------CcceeEeec-CCCCc
Confidence 6 777777777766554 55668899999999999999999999999999999983 233333332 13456
Q ss_pred eeeEEEcC----------CCCeEEEeeCCCCeEEEEECCCC-eeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEe
Q psy2110 418 WKKCCFSG----------DGEYVCAGSARQHALYIWEKSVG-NLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLW 485 (622)
Q Consensus 418 ~~~~~~sp----------dg~~l~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw 485 (622)
+.+++|+| ++++|++++. |+.|++||+.++ +++..+.+|... |++++|+|+++ |++++ ||.|++|
T Consensus 534 v~~~~~sp~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 534 INAISWKPAEKGANEEEIEEDLVATGSL-DTNIFIYSVKRPMKIIKALNAHKDG-VNNLLWETPST-LVSSGADACIKRW 610 (615)
T ss_dssp EEEEEECCCC------CCSCCEEEEEET-TSCEEEEESSCTTCCEEETTSSTTC-EEEEEEEETTE-EEEEETTSCEEEE
T ss_pred eeEEEEcCccccccccccCCCEEEEEcC-CCcEEEEECCCCceechhhhcCccc-eEEEEEcCCCC-eEEecCCceEEEE
Confidence 78999999 9999999997 999999999998 788899999876 99999999999 99999 9999999
Q ss_pred ecC
Q psy2110 486 AQN 488 (622)
Q Consensus 486 ~~~ 488 (622)
++.
T Consensus 611 ~~~ 613 (615)
T 1pgu_A 611 NVV 613 (615)
T ss_dssp EEC
T ss_pred eee
Confidence 985
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-51 Score=451.90 Aligned_cols=451 Identities=13% Similarity=0.129 Sum_probs=336.1
Q ss_pred CCcceEEEEccCCcEEEeccCCCeEEEEecccccee-------------cccCceEEeecCCceEEEeechhhhhcCCCC
Q psy2110 1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK-------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDG 67 (622)
Q Consensus 1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~-------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 67 (622)
++.|+|++|+|+|++||+|+.||+|+||+....+.. +..+++|++++.|++|++||+...
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~------- 89 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQ------- 89 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTC-------
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCC-------
Confidence 367999999999999999999999999998765332 223678999999999999998642
Q ss_pred CCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceE-----------EEEeccCcceeEEEEeecC
Q psy2110 68 DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV-----------KILHGTKGELLLDVVEFDG 136 (622)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~ 136 (622)
+.+..+.++..+.+++|+|++++|++|+.+ |.|++||+.++++. ..+.+|.+.|
T Consensus 90 -----~~~~~~~~~~~V~~v~~sp~g~~l~sgs~d-g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V--------- 154 (902)
T 2oaj_A 90 -----KVLTTVFVPGKITSIDTDASLDWMLIGLQN-GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI--------- 154 (902)
T ss_dssp -----SEEEEEECSSCEEEEECCTTCSEEEEEETT-SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC---------
T ss_pred -----cEEEEEcCCCCEEEEEECCCCCEEEEEcCC-CcEEEEECCCCccccceeccccccccccccCCCCe---------
Confidence 122333455678899999999999999975 99999999988764 1224566655
Q ss_pred ccccccceeEEEEcCC-CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccc-------cccccceEEEEECCCCCE
Q psy2110 137 ALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGA-------LDCISLAVTCAFNKRGTL 208 (622)
Q Consensus 137 ~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~ 208 (622)
++++|+|+ +.+|++|+.||.| +||+.+++....+..+..+...+. ......|.+++|+|+|++
T Consensus 155 --------~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 155 --------VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp --------CEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred --------EEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 69999996 4789999999999 999999887777765521100000 001145899999999999
Q ss_pred EEEEeCCCeEEEEEcCCCceEEE--ec---c-------------CCcCeeEEEEc----CCC-CEEEEEeCC-----CcE
Q psy2110 209 LAVGCNDGRIVLWDFLTRGIAKI--IS---A-------------HMHPVCSISWS----RNG-YKIISASTD-----NNV 260 (622)
Q Consensus 209 l~~~~~dg~i~iwd~~~~~~~~~--~~---~-------------~~~~v~~~~~s----~~~-~~l~s~~~d-----~~i 260 (622)
|++++.|+.|++||+.+++++.. +. . |...|++++|+ |++ ..|++|+.+ +.+
T Consensus 226 lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v 305 (902)
T 2oaj_A 226 IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSL 305 (902)
T ss_dssp EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCE
T ss_pred EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceE
Confidence 99999999999999999887653 31 2 34579999995 443 467777665 378
Q ss_pred EEEECC------------------CCcEEEEEe--CCCCeEEEEEeCC---------CCeEEEEeeCCCcEEEEEecCCc
Q psy2110 261 CIWDVL------------------TGECEQKYR--FPSPILKVQFHPR---------NDHMFLVCPMRHAAVLVDTDGDH 311 (622)
Q Consensus 261 ~iwd~~------------------~~~~~~~~~--~~~~v~~~~~~~~---------~~~~~~~~~~~~~i~~~d~~~~~ 311 (622)
.+|++. +++..+.+. +...+..+.+.++ +...+++.+.++.+++|++.++.
T Consensus 306 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 306 TMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp EEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCC
T ss_pred EEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCC
Confidence 899842 234455554 5678888888662 22356777789999999986553
Q ss_pred eeec-------ccC----------------------------------CCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110 312 QIVP-------IDE----------------------------------DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP 350 (622)
Q Consensus 312 ~~~~-------~~~----------------------------------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 350 (622)
.... +.. |...+..++|+|++++|++|+.|++|++||+.
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~ 465 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDAS 465 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESS
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECC
Confidence 2211 222 22333445567899999999999999999998
Q ss_pred CccEE----EEE--e-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCC-------C------------
Q psy2110 351 ALELK----ASF--K-----ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGK-------D------------ 400 (622)
Q Consensus 351 ~~~~~----~~~--~-----~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~------------ 400 (622)
++... ... . +|...|.+++|+|++++||+++.|++|+||++......+. .
T Consensus 466 ~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (902)
T 2oaj_A 466 HGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN 545 (902)
T ss_dssp CCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred CccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccC
Confidence 76421 111 1 7888999999999999999999999999999985321000 0
Q ss_pred C-----------C------CCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEE-----Ee-cC
Q psy2110 401 G-----------D------PEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI-----LH-GT 457 (622)
Q Consensus 401 ~-----------~------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~-----~~-~~ 457 (622)
+ . ..++..+.. +...+.+++||||| +||+|+. |++|+|||+.++..+.. +. +|
T Consensus 546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~-D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 546 TNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYA-AGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp SSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEET-TSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred CccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc-EEEEEeC-CCcEEEEECCCCeEEEEeehhHhcccc
Confidence 0 0 011233333 34567899999999 9999997 99999999988876642 22 77
Q ss_pred CCCceeEEEEC-----CCC---CEEEEEe-CCcEEEeec
Q psy2110 458 KGELLLDVVWH-----PVR---PIIASIS-SGVVSLWAQ 487 (622)
Q Consensus 458 ~~~~v~~v~~s-----p~~---~~l~s~~-dg~v~iw~~ 487 (622)
.+. |++++|+ ||| ++|++++ |++|++|++
T Consensus 622 ~~~-V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 622 SAC-VTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp CCC-EEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred ccc-eEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 766 9999999 886 7999999 999999998
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-51 Score=477.81 Aligned_cols=466 Identities=14% Similarity=0.182 Sum_probs=370.7
Q ss_pred CCcceEEEEccCCcEEEeccCCCeEEEEecccccee---------------cc--cCceEEeecCCceEEEeechhhhhc
Q psy2110 1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------AS--RGNCLLVNTGDRLIRVYNHQEVLNA 63 (622)
Q Consensus 1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~--~~~~l~~~~~d~~i~~w~~~~~~~~ 63 (622)
++.|++++|||+|++||+|+.||+|+|||+.+++.. .+ ++.++++++.|+.|++||+....
T Consensus 657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-- 734 (1249)
T 3sfz_A 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-- 734 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS--
T ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc--
Confidence 367999999999999999999999999999876543 12 45588999999999999986421
Q ss_pred CCCCCCccchhhhhh-ccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCc-------------ceeE
Q psy2110 64 GKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKG-------------ELLL 129 (622)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~-------------~v~~ 129 (622)
....+ .+...+.+++|+|++++|++++.+ |.|++||+.+++....+..... .+..
T Consensus 735 ----------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 803 (1249)
T 3sfz_A 735 ----------CRNTMFGHTNSVNHCRFSPDDELLASCSAD-GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC 803 (1249)
T ss_dssp ----------EEEEECCCSSCEEEEEECSSTTEEEEEESS-SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred ----------hhheecCCCCCEEEEEEecCCCEEEEEECC-CeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence 12222 344567899999999999999975 9999999998887766543210 0000
Q ss_pred EEE---------eecCc----------------cccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccC
Q psy2110 130 DVV---------EFDGA----------------LDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH 184 (622)
Q Consensus 130 ~~~---------~~~~~----------------~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 184 (622)
... ...+. ......|.+++|+|+++++++++.||.|++|++.++.....+..|..
T Consensus 804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~ 883 (1249)
T 3sfz_A 804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS 883 (1249)
T ss_dssp CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS
T ss_pred EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc
Confidence 000 00000 02234668999999999999999999999999998877766665543
Q ss_pred CCc----------------cccc----------------------------------------------------ccccc
Q psy2110 185 PEF----------------DGAL----------------------------------------------------DCISL 196 (622)
Q Consensus 185 ~~~----------------~~~~----------------------------------------------------~~~~~ 196 (622)
... .+.+ .....
T Consensus 884 ~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1249)
T 3sfz_A 884 WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ 963 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSC
T ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCc
Confidence 200 0000 00123
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Q psy2110 197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF 276 (622)
Q Consensus 197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 276 (622)
+.+++|+|+++++++|+.+|.|++|++.+++....+.+|...|++++|+|++++|++++.||.|++||+.+++......+
T Consensus 964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1043 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH 1043 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCC
T ss_pred EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecC
Confidence 56667777777777777777777777777777888889999999999999999999999999999999999998877778
Q ss_pred CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE
Q psy2110 277 PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA 356 (622)
Q Consensus 277 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 356 (622)
...+.++.|+|++ .+++++.++.+++||+.++.....+..|...+.+++|+|+++++++++.||.|++||+.+++++.
T Consensus 1044 ~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~ 1121 (1249)
T 3sfz_A 1044 QETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121 (1249)
T ss_dssp SSCEEEEEECSSS--EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSB
T ss_pred CCcEEEEEEcCCC--cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceee
Confidence 9999999999976 47888999999999999999888999999999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec-cccceeeeeEEEcCCCCeEEEeeC
Q psy2110 357 SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD-LVNKTMWKKCCFSGDGEYVCAGSA 435 (622)
Q Consensus 357 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~ 435 (622)
.+.+|...|++++|+|++++|++++.||.|++||+......... .+...... ..+...+.+++|+|||++|++++
T Consensus 1122 ~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~- 1197 (1249)
T 3sfz_A 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC---APISVEEGTATHGGWVTDVCFSPDSKTLVSAG- 1197 (1249)
T ss_dssp CCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCC---CCCC-------CCSCCCEEEECTTSSCEEEES-
T ss_pred eeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEe---ccccccccccccCceEEEEEECCCCCEEEECC-
Confidence 99999999999999999999999999999999999843221110 00011111 12334577899999999999875
Q ss_pred CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110 436 RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN 488 (622)
Q Consensus 436 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~ 488 (622)
|.|++||+.+++.+..+.+|... |.+++|+|++++|++++ ||.|++|++.
T Consensus 1198 --g~v~vwd~~~g~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1198 --GYLKWWNVATGDSSQTFYTNGTN-LKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp --SSEEEBCSSSCBCCCCCCCSSCC-CCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred --CeEEEEECCCCceeeeeeccCCc-ccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 68999999999999999888776 99999999999999999 9999999973
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-47 Score=420.74 Aligned_cols=473 Identities=11% Similarity=0.063 Sum_probs=327.6
Q ss_pred CcceEEEEccCCcEEEeccCCCeEEEEecccccee--------------cccCceEEeecCCceEEEeechhhhhcCCCC
Q psy2110 2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK--------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDG 67 (622)
Q Consensus 2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~--------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 67 (622)
..|.+++|+| |++||+++.|++|+|||+.+.+.. .++++++++++.|+.|++||+.+........
T Consensus 59 ~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i 137 (902)
T 2oaj_A 59 SAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL 137 (902)
T ss_dssp CCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence 5799999999 889999999999999999875432 4578999999999999999987532110000
Q ss_pred CCccchhh-hh-hccccceeEEEEcCC-CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEee-cCccccccc
Q psy2110 68 DPEPIQKL-QD-LVNKTMWKKCCFSGD-GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEF-DGALDCISL 143 (622)
Q Consensus 68 ~~~~~~~~-~~-~~~~~~~~~~~~sp~-~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 143 (622)
...... .. ..+...+.+++|+|+ +..|++|+.+ +.| +||+.+++.+..+.+|...-....... .........
T Consensus 138 --~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d-g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~ 213 (902)
T 2oaj_A 138 --DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY-VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK 213 (902)
T ss_dssp --CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS-CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCC
T ss_pred --ccccccccccccCCCCeEEEEEccCCCCEEEEEeCC-CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCC
Confidence 000000 11 224456889999996 4678887764 999 999999999998887721100000000 000001123
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccc--cc---cccCCC--cccccccccceE------------------
Q psy2110 144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI--IS---AHMHPE--FDGALDCISLAV------------------ 198 (622)
Q Consensus 144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~--~~---~~~~~~--~~~~~~~~~~v~------------------ 198 (622)
|++++|+|+|++||+|+.||+|++||+.+++.+.. +. .+.... ..+.+.....|.
T Consensus 214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s 293 (902)
T 2oaj_A 214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS 293 (902)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe
Confidence 57999999999999999999999999988876532 11 110000 000000001122
Q ss_pred -----------------------------------------------------EEEECC----------CCCEEEEEeCC
Q psy2110 199 -----------------------------------------------------TCAFNK----------RGTLLAVGCND 215 (622)
Q Consensus 199 -----------------------------------------------------~~~~s~----------~g~~l~~~~~d 215 (622)
.+.+.+ +...+++++.|
T Consensus 294 g~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~d 373 (902)
T 2oaj_A 294 HKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGN 373 (902)
T ss_dssp EECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred CCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCC
Confidence 233322 22355666667
Q ss_pred CeEEEEEcCCCceEEE-----------------------------------------eccCCcCeeEEEEcCCCCEEEEE
Q psy2110 216 GRIVLWDFLTRGIAKI-----------------------------------------ISAHMHPVCSISWSRNGYKIISA 254 (622)
Q Consensus 216 g~i~iwd~~~~~~~~~-----------------------------------------~~~~~~~v~~~~~s~~~~~l~s~ 254 (622)
+.|++|++.++..... +.+|...+.+++|+|++++|++|
T Consensus 374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSg 453 (902)
T 2oaj_A 374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITG 453 (902)
T ss_dssp SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEE
T ss_pred CcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEe
Confidence 7788888765532211 23344445556668899999999
Q ss_pred eCCCcEEEEECCCCcEE----EE--E------eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc-----------
Q psy2110 255 STDNNVCIWDVLTGECE----QK--Y------RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH----------- 311 (622)
Q Consensus 255 ~~d~~i~iwd~~~~~~~----~~--~------~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----------- 311 (622)
+.|++|++||+.++... .. + .|...|.+++|+|+++ ++++++.|+.|++|++.+.+
T Consensus 454 s~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~ 532 (902)
T 2oaj_A 454 HSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSIETGDVVLFKYEVNQFYSVENRPESG 532 (902)
T ss_dssp ETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEETTSCEEEEEEEECCC----------
T ss_pred cCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEecCcEEEEEEecCccccCccccCCCc
Confidence 99999999999887421 11 1 3667899999999998 68899999999999997652
Q ss_pred ----------------------------------eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEE
Q psy2110 312 ----------------------------------QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKAS 357 (622)
Q Consensus 312 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 357 (622)
++..+..|...|.+++|+|+| +|++|+.|++|++||+++...+..
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~ 611 (902)
T 2oaj_A 533 DLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM 611 (902)
T ss_dssp -----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred ccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE
Confidence 255677899999999999999 999999999999999988776642
Q ss_pred -----Ee-cCCCCEEEEEEc-----CCC---CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc---cceeeee
Q psy2110 358 -----FK-ASTTAIKSIEFA-----RRG---NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV---NKTMWKK 420 (622)
Q Consensus 358 -----~~-~~~~~i~~~~~s-----~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 420 (622)
+. +|...|++++|+ ||| ++|++++.|++|++||+... ........+.++. ....+..
T Consensus 612 ~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~------~~g~~~~~~~~~~~~~~~~~v~~ 685 (902)
T 2oaj_A 612 ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPA------SGGKFDVQLMDITNVTSKGPIHK 685 (902)
T ss_dssp EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEEC------GGGCEEEEEEEEEECCSSCCCCE
T ss_pred eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecC------CCCcEEEEecCceecCCCCceEE
Confidence 22 788999999999 886 89999999999999998210 0112333333332 1233334
Q ss_pred EE-Ec----------------------CCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEE---E------EC
Q psy2110 421 CC-FS----------------------GDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDV---V------WH 468 (622)
Q Consensus 421 ~~-~s----------------------pdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v---~------~s 468 (622)
++ |+ ++|..|+++ +..|+||++.++++.+...+|... +..+ . |+
T Consensus 686 i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~---~~~ir~~~~~~~k~~~k~~~~~~~-~~~v~~~~~~~~~~~~ 761 (902)
T 2oaj_A 686 IDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG---FDDIRLITLGKSKSTHKGFKYPLA-ATGLSYISTVEKNNDR 761 (902)
T ss_dssp EEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC---SSEEEEECTTCCCEEEEECSSCEE-EEEEEEEEEECSSSCE
T ss_pred EEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe---ccceEEEeCccccceeeEccccee-eeEEEEEEeccccccc
Confidence 43 54 566555554 457999999999999888777633 6665 6 78
Q ss_pred CCCCEEEEEe-CCcEEEeecCCcc
Q psy2110 469 PVRPIIASIS-SGVVSLWAQNQVE 491 (622)
Q Consensus 469 p~~~~l~s~~-dg~v~iw~~~~~~ 491 (622)
+++..|++.. ||+|++|++...+
T Consensus 762 ~~~~~l~~~~~~g~i~~~s~p~l~ 785 (902)
T 2oaj_A 762 KNLTVIITLEINGHLRVFTIPDFK 785 (902)
T ss_dssp EEEEEEEEEETTSEEEEEETTTCC
T ss_pred cCceEEEEEeCCCcEEEEECcchH
Confidence 8899999999 9999999996543
No 10
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.7e-47 Score=419.47 Aligned_cols=407 Identities=17% Similarity=0.242 Sum_probs=339.2
Q ss_pred CCcceEEEEccCCcEEEeccCCCeEEEEecccccee---------------cccCceEEeecCCceEEEeechhhhhcCC
Q psy2110 1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGK 65 (622)
Q Consensus 1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 65 (622)
++.|++++|||+|++||+|+.||.|+|||+.+++.. .+++++|++++.|+.|++|++.+.
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~----- 87 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG----- 87 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-----
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----
Confidence 468999999999999999999999999998775433 457889999999999999998642
Q ss_pred CCCCccchhhhhhc-cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC-ceEEEEeccCcceeEEEEeecCccccccc
Q psy2110 66 DGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG-NLVKILHGTKGELLLDVVEFDGALDCISL 143 (622)
Q Consensus 66 ~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 143 (622)
..+..+. +...+.+++|+|++++|++++.+ +.|++||+.++ .....+.+|...+
T Consensus 88 -------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~v---------------- 143 (814)
T 3mkq_A 88 -------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD-LTVKLWNWENNWALEQTFEGHEHFV---------------- 143 (814)
T ss_dssp -------CEEEEEECCSSCEEEEEECSSSSEEEEEETT-SEEEEEEGGGTSEEEEEEECCSSCE----------------
T ss_pred -------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCC-CEEEEEECCCCceEEEEEcCCCCcE----------------
Confidence 2222233 44568899999999999999975 99999999887 7778889999888
Q ss_pred eeEEEEcC-CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC--CCCEEEEEeCCCeEEE
Q psy2110 144 AVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK--RGTLLAVGCNDGRIVL 220 (622)
Q Consensus 144 v~~~~~s~-d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~i~i 220 (622)
++++|+| ++.+|++++.||.|++||+.++.....+..+.. ..+.+++|+| ++++|++++.+|.|++
T Consensus 144 -~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 212 (814)
T 3mkq_A 144 -MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE----------RGVNYVDYYPLPDKPYMITASDDLTIKI 212 (814)
T ss_dssp -EEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT----------TCCCEEEECCSTTCCEEEEECTTSEEEE
T ss_pred -EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC----------CCEEEEEEEECCCCCEEEEEeCCCEEEE
Confidence 5999999 889999999999999999988776666554432 2478899999 9999999999999999
Q ss_pred EEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110 221 WDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMR 299 (622)
Q Consensus 221 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~ 299 (622)
||+.+++.+..+.+|...|.+++|+|++.+|++++.||.|++||+.+++....+. +...+.+++|+|++..++++++.+
T Consensus 213 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 292 (814)
T 3mkq_A 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292 (814)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEET
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999988887 668999999999998776666677
Q ss_pred CcEEEEEecCCceeecc-------------------------------------------cCCCCceEEEEEeeCCCEEE
Q psy2110 300 HAAVLVDTDGDHQIVPI-------------------------------------------DEDSDLSIVASFDRRGQHVV 336 (622)
Q Consensus 300 ~~i~~~d~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~l~ 336 (622)
+.+.+|++........+ ..+...+.+++|+|+|++++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la 372 (814)
T 3mkq_A 293 NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVT 372 (814)
T ss_dssp TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEE
T ss_pred CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEE
Confidence 88888887543221111 12334567899999999999
Q ss_pred EEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccce
Q psy2110 337 TGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT 416 (622)
Q Consensus 337 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (622)
+++ ++.+.+|++....... .+.+.+++|+|++++|++++.++.|++|+.-. . ...
T Consensus 373 ~~~-~~~~~i~~~~~~~~~~-----~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-----------------~--~~~ 427 (814)
T 3mkq_A 373 VVG-DGEYVIYTALAWRNKA-----FGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-----------------E--VTS 427 (814)
T ss_dssp EEE-TTEEEEEETTTTEEEE-----EEECSEEEECTTSSCEEEECTTCCEEEEETTE-----------------E--CTT
T ss_pred Eec-CCEEEEEECccccccC-----CCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-----------------C--ccc
Confidence 988 8999999987654332 34577999999999999999999999996431 0 112
Q ss_pred eeeeEEEcCCC---CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEE
Q psy2110 417 MWKKCCFSGDG---EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASI 477 (622)
Q Consensus 417 ~~~~~~~spdg---~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 477 (622)
.+.+++|+|+| ++|++++. ++.|++||+.+++.+..+.+|.. .++|+|++++|+++
T Consensus 428 ~v~~~~~s~dg~~~~~l~~~~~-d~~v~~~d~~~~~~~~~~~~~~~----~v~~s~dg~~la~~ 486 (814)
T 3mkq_A 428 WSVPMHSAIDRLFSGALLGVKS-DGFVYFFDWDNGTLVRRIDVNAK----DVIWSDNGELVMIV 486 (814)
T ss_dssp CCCCCSSCCCEEECSSSEEEEE-TTEEEEECTTTCCEEEEESSCEE----EEEECTTSSEEEEE
T ss_pred eEEcCCcCccceecceEEEEec-CCEEEEEECCcCcEEEEEecCCC----EEEEcCCCCEEEEE
Confidence 23456899998 67888876 89999999999999999887753 89999999999999
No 11
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.9e-45 Score=394.00 Aligned_cols=408 Identities=13% Similarity=0.181 Sum_probs=329.0
Q ss_pred cccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhc-cccc-eeEEEEcC--CCCEEEEecCCCCeEEEEEcC
Q psy2110 37 ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTM-WKKCCFSG--DGEYVCAGSARQHALYIWEKS 112 (622)
Q Consensus 37 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~sp--~~~~l~~~~~~~~~i~vwd~~ 112 (622)
.++++++++++ ++.+++|++.+.. .+......+. +... +.+++|+| ++++|++++.+ +.|++||+.
T Consensus 27 spdg~~l~~~~-~~~v~v~~~~~~~--------~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~d-g~v~vw~~~ 96 (615)
T 1pgu_A 27 DPTTNAIAYPC-GKSAFVRCLDDGD--------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES-GKVIVWGWT 96 (615)
T ss_dssp ETTTTEEEEEE-TTEEEEEECCSSC--------CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT-SEEEEEEEE
T ss_pred CCCCCEEEEec-CCeEEEEECCCCC--------CccccceEEecCCCceEEEEEECcCCCCCEEEEecCC-CEEEEEeCC
Confidence 56788888887 7899999986320 0002222333 3455 78999999 99999999975 999999997
Q ss_pred CC--------ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC----CcEEEEecCCcccccccc
Q psy2110 113 VG--------NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND----GRIVLWDFLTRGIAKIIS 180 (622)
Q Consensus 113 ~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d----g~i~vw~~~~~~~~~~~~ 180 (622)
++ +....+..|...+ .+++|+|++++|++++.+ +.|++|+ .++....+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~ 157 (615)
T 1pgu_A 97 FDKESNSVEVNVKSEFQVLAGPI-----------------SDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS 157 (615)
T ss_dssp EEGGGTEEEEEEEEEEECCSSCE-----------------EEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC
T ss_pred CCcccccccccccchhhcccccE-----------------EEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee
Confidence 55 7778888888888 599999999999999987 6888888 455666665
Q ss_pred cccCCCcccccccccceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCceEEEeccCCc---CeeEEEEcCC-CCEEEEEe
Q psy2110 181 AHMHPEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMH---PVCSISWSRN-GYKIISAS 255 (622)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~s~~ 255 (622)
.|. ..|.+++|+|+++ ++++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++
T Consensus 158 ~~~-----------~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (615)
T 1pgu_A 158 GHS-----------QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 226 (615)
T ss_dssp SCS-----------SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred cCC-----------ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe
Confidence 554 3589999999998 899999999999999999999999999999 9999999999 99999999
Q ss_pred CCCcEEEEECCCCcEEEEE-----eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC----CCceEEE
Q psy2110 256 TDNNVCIWDVLTGECEQKY-----RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED----SDLSIVA 326 (622)
Q Consensus 256 ~d~~i~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~ 326 (622)
.|+.|++||+.+++.+..+ .+...|.+++|+ ++. ++++++.++.+++||+++...+..+..+ ...+..+
T Consensus 227 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 227 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 9999999999999999998 688999999999 655 6888899999999999998887777766 3566777
Q ss_pred EEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCC---------------------------------
Q psy2110 327 SFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARR--------------------------------- 373 (622)
Q Consensus 327 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~--------------------------------- 373 (622)
.++ ++.++++++.+|.|++||+.+++.+..+..|...|++++| |+
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~ 382 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK 382 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCS
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECC
Confidence 775 8999999999999999999999888888887777777666 54
Q ss_pred CCEEEEEeCCCcEEEEecccccccC--------C-------------------CC-------------------------
Q psy2110 374 GNCLLVNTGDRLIRVYNHQEVLNAG--------K-------------------DG------------------------- 401 (622)
Q Consensus 374 ~~~l~~~~~d~~i~i~d~~~~~~~~--------~-------------------~~------------------------- 401 (622)
+..|++++.|+.|++|++....... . .+
T Consensus 383 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (615)
T 1pgu_A 383 AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVG 462 (615)
T ss_dssp TTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEE
T ss_pred CcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEe
Confidence 5566677777777777665321000 0 00
Q ss_pred -C-CCccee----------eeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec-CCCCceeEEEEC
Q psy2110 402 -D-PEPIQK----------LQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG-TKGELLLDVVWH 468 (622)
Q Consensus 402 -~-~~~~~~----------~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~v~~s 468 (622)
. ...+.. .....+...+.+++|+|+|++|++++. |+.|++||+.+++++..+.+ |... |++++|+
T Consensus 463 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~h~~~-v~~~~~s 540 (615)
T 1pgu_A 463 LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV-MGKILLYDLQSREVKTSRWAFRTSK-INAISWK 540 (615)
T ss_dssp ETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEEECCSCCCSSC-EEEEEEC
T ss_pred ecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC-CCeEEEeeCCCCcceeEeecCCCCc-eeEEEEc
Confidence 0 000100 111123356788999999999999997 99999999999999999888 7766 9999999
Q ss_pred C----------CCCEEEEEe-CCcEEEeecCCc
Q psy2110 469 P----------VRPIIASIS-SGVVSLWAQNQV 490 (622)
Q Consensus 469 p----------~~~~l~s~~-dg~v~iw~~~~~ 490 (622)
| ++++|++++ ||.|++|++...
T Consensus 541 p~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 541 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 9 999999999 999999999753
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3e-44 Score=363.08 Aligned_cols=284 Identities=18% Similarity=0.312 Sum_probs=266.0
Q ss_pred cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG 159 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 159 (622)
+...+.+++|+|++++|++|+.| ++|+|||+.+++....+.+|.+.| ++++|+|++++|++|
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~D-g~i~vwd~~~~~~~~~l~~h~~~V-----------------~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASED-ATIKVWDYETGDFERTLKGHTDSV-----------------QDISFDHSGKLLASC 168 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESS-SCEEEEETTTCCCCEEECCCSSCE-----------------EEEEECTTSSEEEEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCcEEEEEeccCCcE-----------------EEEEEcCCCCEEEEE
Confidence 45678899999999999999975 999999999999999999999998 599999999999999
Q ss_pred eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe
Q psy2110 160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV 239 (622)
Q Consensus 160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 239 (622)
+.|++|++||+.+++.+..+..|.. .|.+++|+|++++|++|+.|+.|++||+.++.++..+.+|...|
T Consensus 169 s~D~~i~iwd~~~~~~~~~~~~h~~-----------~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v 237 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIRTMHGHDH-----------NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 237 (410)
T ss_dssp ETTSCCCEEETTSSCEEECCCCCSS-----------CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCceeEEEcCCCC-----------CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccE
Confidence 9999999999999888888877653 58999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCC-------------------CeEEEEeeCC
Q psy2110 240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRN-------------------DHMFLVCPMR 299 (622)
Q Consensus 240 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-------------------~~~~~~~~~~ 299 (622)
.++.|++++.+|++++.|+.|++||+.++++...+. |...|.+++|+|++ ..++++++.|
T Consensus 238 ~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D 317 (410)
T 1vyh_C 238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317 (410)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC
Confidence 999999999999999999999999999999988886 78899999999973 3478999999
Q ss_pred CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy2110 300 HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLV 379 (622)
Q Consensus 300 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 379 (622)
+.+++||++++..+..+..|...+.+++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++
T Consensus 318 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 397 (410)
T 1vyh_C 318 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 397 (410)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEE
T ss_pred CeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEecc
Q psy2110 380 NTGDRLIRVYNHQ 392 (622)
Q Consensus 380 ~~~d~~i~i~d~~ 392 (622)
++.|+.|++|+++
T Consensus 398 gs~D~~i~vW~~r 410 (410)
T 1vyh_C 398 GSVDQTVKVWECR 410 (410)
T ss_dssp EETTSEEEEEC--
T ss_pred EeCCCcEEEEeCC
Confidence 9999999999864
No 13
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.6e-43 Score=345.38 Aligned_cols=292 Identities=19% Similarity=0.367 Sum_probs=251.1
Q ss_pred ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccc
Q psy2110 115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI 194 (622)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (622)
+....+.+|.+.| ++++|+|++++|++|+.||+|++||..+++....+..+.
T Consensus 55 ~~~~~l~gH~~~V-----------------~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~----------- 106 (354)
T 2pbi_B 55 KTRRTLKGHGNKV-----------------LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC----------- 106 (354)
T ss_dssp CEEEEEECCSSCE-----------------EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-----------
T ss_pred EEEEEecCCCCeE-----------------EEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCC-----------
Confidence 5667899999998 599999999999999999999999998887766665543
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEcCCC------ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy2110 195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR------GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG 268 (622)
Q Consensus 195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~ 268 (622)
..|.+++|+|+|++|++|+.|+.+++|++... .....+..|...|.+++|+|++..|++++.|++|++||+.++
T Consensus 107 ~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~ 186 (354)
T 2pbi_B 107 TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG 186 (354)
T ss_dssp SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred CCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Confidence 34789999999999999999999999998643 345667789999999999999999999999999999999998
Q ss_pred cEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q psy2110 269 ECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVL 347 (622)
Q Consensus 269 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 347 (622)
+++..+. |...|.+++|+|+ +++++|++|+.||.|++|
T Consensus 187 ~~~~~~~~h~~~v~~~~~~~~-----------------------------------------~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 187 QLLQSFHGHGADVLCLDLAPS-----------------------------------------ETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp CEEEEEECCSSCEEEEEECCC-----------------------------------------SSCCEEEEEETTSCEEEE
T ss_pred eEEEEEcCCCCCeEEEEEEeC-----------------------------------------CCCCEEEEEeCCCeEEEE
Confidence 8877665 4444554444432 246789999999999999
Q ss_pred eCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCC
Q psy2110 348 SCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG 427 (622)
Q Consensus 348 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 427 (622)
|+++++++..+..|...|++++|+|++.+|++++.|++|++||++. ...+..+........+.+++|+|+|
T Consensus 226 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~---------~~~~~~~~~~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA---------DREVAIYSKESIIFGASSVDFSLSG 296 (354)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------TEEEEEECCTTCCSCEEEEEECTTS
T ss_pred ECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC---------CcEEEEEcCCCcccceeEEEEeCCC
Confidence 9999999999999999999999999999999999999999999983 2233333333333456788999999
Q ss_pred CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110 428 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA 486 (622)
Q Consensus 428 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~ 486 (622)
++|++++. |+.|++||+.+++.+..+.+|.+. |++++|+|++++|++++ ||+|+||+
T Consensus 297 ~~l~~g~~-d~~i~vwd~~~~~~~~~l~~h~~~-v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 297 RLLFAGYN-DYTINVWDVLKGSRVSILFGHENR-VSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEEET-TSCEEEEETTTCSEEEEECCCSSC-EEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEEC-CCcEEEEECCCCceEEEEECCCCc-EEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999997 999999999999999999999887 99999999999999999 99999996
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-43 Score=341.19 Aligned_cols=284 Identities=18% Similarity=0.255 Sum_probs=259.0
Q ss_pred ccccceeEEEEcCC----CCEEEEecCCCCeEEEEEcCCCce--EEEEeccCcceeEEEEeecCccccccceeEEEEcCC
Q psy2110 79 VNKTMWKKCCFSGD----GEYVCAGSARQHALYIWEKSVGNL--VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR 152 (622)
Q Consensus 79 ~~~~~~~~~~~sp~----~~~l~~~~~~~~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d 152 (622)
.+...|.+++|+|+ +.+|++|+.| ++|+||++.+++. ...+.+|...| .+++|+++
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D-~~v~vW~~~~~~~~~~~~l~gh~~~v-----------------~~~~~~~~ 91 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLD-DLVKVWKWRDERLDLQWSLEGHQLGV-----------------VSVDISHT 91 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCE-----------------EEEEECSS
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCC-CCEEEEECCCCCeeeeeeeccCCCCE-----------------EEEEECCC
Confidence 35567889999985 6689999976 9999999987754 45688999988 59999999
Q ss_pred CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII 232 (622)
Q Consensus 153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~ 232 (622)
+.++++++.|++|++||+.+++.+..+..+.. .+.+++|+|++++|++++.++.|++|++.+++....+
T Consensus 92 ~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~-----------~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~ 160 (321)
T 3ow8_A 92 LPIAASSSLDAHIRLWDLENGKQIKSIDAGPV-----------DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160 (321)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCTT-----------CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc-----------cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence 99999999999999999999988777765532 3678999999999999999999999999999999999
Q ss_pred ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110 233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH 311 (622)
Q Consensus 233 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 311 (622)
..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +..+|.+++|+|++. ++++++.|+.|++||++...
T Consensus 161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTCC
T ss_pred cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCcc
Confidence 9999999999999999999999999999999999999998887 778999999999987 68889999999999999998
Q ss_pred eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy2110 312 QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNH 391 (622)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~ 391 (622)
....+..|...+.+++|+|++++|++++.|+.|++||+.+++++..+..|...|.+++|+|++++|++++.|+.|++||.
T Consensus 240 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 240 LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred c
Q psy2110 392 Q 392 (622)
Q Consensus 392 ~ 392 (622)
.
T Consensus 320 p 320 (321)
T 3ow8_A 320 P 320 (321)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-42 Score=342.06 Aligned_cols=279 Identities=15% Similarity=0.236 Sum_probs=253.6
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc----E
Q psy2110 195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE----C 270 (622)
Q Consensus 195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~ 270 (622)
..|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++|++.+++ .
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 135 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV 135 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee
Confidence 458999999999999999999999999999999999999999999999999999999999999999999998763 3
Q ss_pred EEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeC
Q psy2110 271 EQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSC 349 (622)
Q Consensus 271 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 349 (622)
...+. |...+.++.|++++. +++++.|+.+++||+.+...+..+..|...+.+++|+|+++++++|+.||.|++||+
T Consensus 136 ~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 136 SRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp EEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 44444 788999999998874 788999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCe
Q psy2110 350 PALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEY 429 (622)
Q Consensus 350 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 429 (622)
++++++..+.+|...|++++|+|++++|++++.|+.|++||++. ...+..+........+.+++|+|+|++
T Consensus 214 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA---------DQELMTYSHDNIICGITSVSFSKSGRL 284 (340)
T ss_dssp TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------TEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC---------CcEEEEEccCCcccceEEEEECCCCCE
Confidence 99999999999999999999999999999999999999999983 233333332223346788999999999
Q ss_pred EEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110 430 VCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA 486 (622)
Q Consensus 430 l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~ 486 (622)
|++|+. |+.|++||+.+++.+..+.+|.+. |.+++|+|++.+|++++ ||+|+||+
T Consensus 285 l~~g~~-d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 285 LLAGYD-DFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEET-TSEEEEEETTTCCEEEEEECCSSC-EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECC-CCeEEEEEcccCcEeeEeecCCCc-EEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999997 999999999999999999999987 99999999999999999 99999996
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-42 Score=351.70 Aligned_cols=288 Identities=20% Similarity=0.356 Sum_probs=263.9
Q ss_pred EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccc
Q psy2110 117 VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISL 196 (622)
Q Consensus 117 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (622)
...+.+|...| ++++|+|++.+|++|+.||+|++||+.+++....+..|.. .
T Consensus 101 ~~~l~gh~~~V-----------------~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~-----------~ 152 (410)
T 1vyh_C 101 KYALSGHRSPV-----------------TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-----------S 152 (410)
T ss_dssp SCEEECCSSCE-----------------EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS-----------C
T ss_pred eEeecccCCcE-----------------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCC-----------c
Confidence 45677888888 5999999999999999999999999999988888887753 5
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-
Q psy2110 197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR- 275 (622)
Q Consensus 197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 275 (622)
|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++.+|++++.|++|++||+.+++++..+.
T Consensus 153 V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~ 232 (410)
T 1vyh_C 153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 232 (410)
T ss_dssp EEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC--------------------CCEE
Q psy2110 276 FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR--------------------GQHV 335 (622)
Q Consensus 276 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l 335 (622)
|...+.++.++|++. ++++++.|+.+++||+.+......+..|...+.+++|+|+ |.++
T Consensus 233 h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 311 (410)
T 1vyh_C 233 HREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 311 (410)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred CCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEE
Confidence 778899999999887 6889999999999999999988899999999999999996 6799
Q ss_pred EEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccc
Q psy2110 336 VTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK 415 (622)
Q Consensus 336 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (622)
++|+.|+.|++||+++++++..+.+|...|++++|+|++++|++++.|+.|++||+. ....+..+..+ .
T Consensus 312 ~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~---------~~~~~~~~~~h--~ 380 (410)
T 1vyh_C 312 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK---------NKRCMKTLNAH--E 380 (410)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT---------TSCCCEEEECC--S
T ss_pred EEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCceEEEEcCC--C
Confidence 999999999999999999999999999999999999999999999999999999997 33455566544 3
Q ss_pred eeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110 416 TMWKKCCFSGDGEYVCAGSARQHALYIWEK 445 (622)
Q Consensus 416 ~~~~~~~~spdg~~l~~~~~~d~~i~iwd~ 445 (622)
..+.+++|+|++.+|++|+. |+.|+||++
T Consensus 381 ~~v~~l~~~~~~~~l~sgs~-D~~i~vW~~ 409 (410)
T 1vyh_C 381 HFVTSLDFHKTAPYVVTGSV-DQTVKVWEC 409 (410)
T ss_dssp SCEEEEEECSSSSCEEEEET-TSEEEEEC-
T ss_pred CcEEEEEEcCCCCEEEEEeC-CCcEEEEeC
Confidence 45788999999999999997 999999986
No 17
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-43 Score=356.21 Aligned_cols=351 Identities=14% Similarity=0.190 Sum_probs=288.0
Q ss_pred CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC-EEEEeeCCCcEEEEec----CCcc----
Q psy2110 104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVLWDF----LTRG---- 174 (622)
Q Consensus 104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~vw~~----~~~~---- 174 (622)
..+.+|+++..........|.+.| ++++|+|+++ +||+|+.||.|++|++ .+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 87 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNI-----------------VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWK 87 (425)
T ss_dssp ---------CCCEECEEEEECSCC-----------------SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEE
T ss_pred cccccccchhhhhheeeeeccCce-----------------EEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccc
Confidence 456678887666555556666777 5999999999 9999999999999999 8776
Q ss_pred --cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEE
Q psy2110 175 --IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKII 252 (622)
Q Consensus 175 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 252 (622)
....+....... .........|.+++|+|++++|++++.+|.|++|+ .+++.+..+..|...|.+++|+|++++|+
T Consensus 88 ~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (425)
T 1r5m_A 88 LTIIAELRHPFALS-ASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHII 165 (425)
T ss_dssp EEEEEEEECCCCCC-------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEE
T ss_pred cccccccccccccc-ccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEE
Confidence 233332211110 00000123699999999999999999999999999 67888889999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCcEEEEEeCC-CC---------------eEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110 253 SASTDNNVCIWDVLTGECEQKYRFP-SP---------------ILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316 (622)
Q Consensus 253 s~~~d~~i~iwd~~~~~~~~~~~~~-~~---------------v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 316 (622)
+++.|+.|++||+.+++....+... .. +.+++|+|++ .+++++.++.+++||+.....+..+
T Consensus 166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~ 243 (425)
T 1r5m_A 166 SMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKL 243 (425)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEE
T ss_pred EEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeee
Confidence 9999999999999999998888733 33 8899999975 4788899999999999998888888
Q ss_pred cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccc
Q psy2110 317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLN 396 (622)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 396 (622)
..|...+.+++|+|++++|++++.+|.|++||+++++.+..+..|...|.+++|+|++ +|++++.|+.|++||+..
T Consensus 244 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~--- 319 (425)
T 1r5m_A 244 IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ--- 319 (425)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT---
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC---
Confidence 8999999999999999999999999999999999999999999999999999999999 999999999999999973
Q ss_pred cCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe--------------------eEEEEec
Q psy2110 397 AGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN--------------------LVKILHG 456 (622)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~--------------------~~~~~~~ 456 (622)
...+..+.. ....+.+++|+|++++|++++. ++.|++||+.+++ ++..+.+
T Consensus 320 ------~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (425)
T 1r5m_A 320 ------NTLLALSIV--DGVPIFAGRISQDGQKYAVAFM-DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS 390 (425)
T ss_dssp ------TEEEEEEEC--TTCCEEEEEECTTSSEEEEEET-TSCEEEEECHHHHC--------------CEECCEEEEECC
T ss_pred ------CcEeEeccc--CCccEEEEEEcCCCCEEEEEEC-CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcC
Confidence 334444443 2346788999999999999997 8999999999888 8899999
Q ss_pred CCCC-ceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110 457 TKGE-LLLDVVWHPVRPIIASIS-SGVVSLWAQN 488 (622)
Q Consensus 457 ~~~~-~v~~v~~sp~~~~l~s~~-dg~v~iw~~~ 488 (622)
|... .|++++|+|++++|++++ ||.|++|++.
T Consensus 391 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 391 SQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8762 499999999999999999 9999999985
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.6e-42 Score=335.36 Aligned_cols=280 Identities=14% Similarity=0.269 Sum_probs=252.5
Q ss_pred cceEEEEECCC----CCEEEEEeCCCeEEEEEcCCCce--EEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy2110 195 SLAVTCAFNKR----GTLLAVGCNDGRIVLWDFLTRGI--AKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG 268 (622)
Q Consensus 195 ~~v~~~~~s~~----g~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~ 268 (622)
..|.+++|+|+ +.+|++|+.|+.|++|++.+++. ...+.+|...|.+++|++++.++++++.|++|++||+.++
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~ 112 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG 112 (321)
T ss_dssp SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 45999999985 66899999999999999987654 4568899999999999999999999999999999999999
Q ss_pred cEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q psy2110 269 ECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVL 347 (622)
Q Consensus 269 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 347 (622)
+.+..+. +...+.+++|+|+++ ++++++.++.+++|++.+......+..+...+.+++|+|++++|++|+.||.|++|
T Consensus 113 ~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iw 191 (321)
T 3ow8_A 113 KQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 191 (321)
T ss_dssp EEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 9988887 667899999999987 67888999999999999998888888899999999999999999999999999999
Q ss_pred eCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCC
Q psy2110 348 SCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG 427 (622)
Q Consensus 348 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 427 (622)
|+++++++..+.+|...|++++|+|++++|++++.|+.|++||++. ......+..+ ...+.+++|+|+|
T Consensus 192 d~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~h--~~~v~~~~~sp~~ 260 (321)
T 3ow8_A 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH---------ANLAGTLSGH--ASWVLNVAFCPDD 260 (321)
T ss_dssp ETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT---------CCEEEEECCC--SSCEEEEEECTTS
T ss_pred ECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC---------cceeEEEcCC--CCceEEEEECCCC
Confidence 9999999999999999999999999999999999999999999983 3344444433 3456889999999
Q ss_pred CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110 428 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN 488 (622)
Q Consensus 428 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~ 488 (622)
++|++++. |+.|++||+.+++++..+.+|.+. |.+++|+|++++|++++ ||+|++|+..
T Consensus 261 ~~l~s~s~-D~~v~iwd~~~~~~~~~~~~h~~~-v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 261 THFVSSSS-DKSVKVWDVGTRTCVHTFFDHQDQ-VWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SEEEEEET-TSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CEEEEEeC-CCcEEEEeCCCCEEEEEEcCCCCc-EEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999997 999999999999999999999887 99999999999999999 9999999963
No 19
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.6e-42 Score=378.88 Aligned_cols=383 Identities=15% Similarity=0.171 Sum_probs=318.1
Q ss_pred cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG 159 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 159 (622)
+...+.+++|+|++++|++++.+ |.|+|||+.+++.+..+.+|...+ ++++|+|++++|+++
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~-g~v~iwd~~~~~~~~~~~~~~~~v-----------------~~~~~s~~~~~l~~~ 73 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYS-GRVEIWNYETQVEVRSIQVTETPV-----------------RAGKFIARKNWIIVG 73 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCE-----------------EEEEEEGGGTEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCC-CEEEEEECCCCceEEEEecCCCcE-----------------EEEEEeCCCCEEEEE
Confidence 34567899999999999999975 999999999999999999999988 599999999999999
Q ss_pred eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceEEEeccCCcC
Q psy2110 160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR-GIAKIISAHMHP 238 (622)
Q Consensus 160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~ 238 (622)
+.||.|++|++.+++....+..|. ..|.+++|+|++++|++++.||.|++|++.++ .....+.+|...
T Consensus 74 ~~dg~i~vw~~~~~~~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 142 (814)
T 3mkq_A 74 SDDFRIRVFNYNTGEKVVDFEAHP-----------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (814)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCS-----------SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC
T ss_pred eCCCeEEEEECCCCcEEEEEecCC-----------CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc
Confidence 999999999999998888777665 35899999999999999999999999999987 677888899999
Q ss_pred eeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeC--CCCeEEEEeeCCCcEEEEEecCCcee
Q psy2110 239 VCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHP--RNDHMFLVCPMRHAAVLVDTDGDHQI 313 (622)
Q Consensus 239 v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~ 313 (622)
|.+++|+| ++..|++++.||.|++||+.+++....+. +...+..++|+| ++. ++++++.++.+++||+.+...+
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~ 221 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCV 221 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEE
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEE
Confidence 99999999 88999999999999999999887766665 348899999999 665 6888899999999999999999
Q ss_pred ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEecc
Q psy2110 314 VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNC-LLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~d~~i~i~d~~ 392 (622)
..+..|...+.+++|+|+++++++++.||.|++||+.+++.+..+..|...+.+++|+|++.. +++++.++.+.+|++.
T Consensus 222 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999874 2445557778888876
Q ss_pred cccccC---CCC-----------------------------CCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeE
Q psy2110 393 EVLNAG---KDG-----------------------------DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHAL 440 (622)
Q Consensus 393 ~~~~~~---~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i 440 (622)
...... ..+ ................+.+++|+|+|++|++++ ++.+
T Consensus 302 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~--~~~~ 379 (814)
T 3mkq_A 302 NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG--DGEY 379 (814)
T ss_dssp CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE--TTEE
T ss_pred CCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec--CCEE
Confidence 321100 000 000000000011122456899999999999988 6899
Q ss_pred EEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCCc----ccccccCCCC
Q psy2110 441 YIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQV----ENWSAFAPDF 500 (622)
Q Consensus 441 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~~----~~~~~~s~~~ 500 (622)
++|++....... .+. +.+++|+|+++++++++ +|.|++|+.-.. ....+|+|++
T Consensus 380 ~i~~~~~~~~~~-----~~~-i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~~~~~s~dg 438 (814)
T 3mkq_A 380 VIYTALAWRNKA-----FGK-CQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDR 438 (814)
T ss_dssp EEEETTTTEEEE-----EEE-CSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCCCCSSCCCE
T ss_pred EEEECccccccC-----CCc-eEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEEcCCcCccc
Confidence 999987554322 223 88999999999999998 999999976422 2234788988
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.9e-42 Score=338.05 Aligned_cols=283 Identities=19% Similarity=0.316 Sum_probs=253.3
Q ss_pred hhcc-ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCE
Q psy2110 77 DLVN-KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTL 155 (622)
Q Consensus 77 ~~~~-~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 155 (622)
.+.+ ...+.+++|+|++++|++++.| ++|++||+.+++.+..+..|...+ .+++|+|++++
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~D-g~v~iWd~~~~~~~~~~~~~~~~v-----------------~~~~~s~~~~~ 111 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQD-GKLIIWDSYTTNKVHAIPLRSSWV-----------------MTCAYAPSGNY 111 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECSSSCE-----------------EEEEECTTSSE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCC-CcEEEEECCCCCcceEeecCCccE-----------------EEEEECCCCCE
Confidence 3444 4567899999999999999975 999999999999999999999888 49999999999
Q ss_pred EEEeeCCCcEEEEecCCccc----ccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110 156 LAVGCNDGRIVLWDFLTRGI----AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI 231 (622)
Q Consensus 156 l~s~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~ 231 (622)
|++|+.|+.|++|++.++.. ...+..|. ..|.++.|++++. +++++.|+.|++||+.+++.+..
T Consensus 112 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~ 179 (340)
T 1got_B 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHT-----------GYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTT 179 (340)
T ss_dssp EEEEETTCEEEEEETTTCSBSCEEEEEEECCS-----------SCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEeCCCeEEEEECccCCCcceeEEEecCCC-----------ccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEE
Confidence 99999999999999987532 22233332 3588999998875 88999999999999999999999
Q ss_pred eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC
Q psy2110 232 ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD 310 (622)
Q Consensus 232 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 310 (622)
+.+|.+.|.+++|+|++++|++++.|+.|++||++++++...+. |...|.+++|+|++. ++++++.|+.+++||++..
T Consensus 180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT
T ss_pred EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCC
Confidence 99999999999999999999999999999999999999988887 788999999999887 6888999999999999988
Q ss_pred ceeecccC--CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110 311 HQIVPIDE--DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV 388 (622)
Q Consensus 311 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 388 (622)
..+..+.. +...+.+++|+|+|+++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~i 338 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEe
Confidence 76665543 3346899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q psy2110 389 YN 390 (622)
Q Consensus 389 ~d 390 (622)
||
T Consensus 339 Wd 340 (340)
T 1got_B 339 WN 340 (340)
T ss_dssp EC
T ss_pred cC
Confidence 96
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.4e-41 Score=327.90 Aligned_cols=295 Identities=16% Similarity=0.257 Sum_probs=245.4
Q ss_pred ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCcc-----cccccccccCCCcc
Q psy2110 115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRG-----IAKIISAHMHPEFD 188 (622)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~~ 188 (622)
.+..++.+|.+.| ++++|+|++ ++|++|+.|++|++|++.... .+..+..|.
T Consensus 8 ~l~~~l~gH~~~V-----------------~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~----- 65 (319)
T 3frx_A 8 VLRGTLEGHNGWV-----------------TSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS----- 65 (319)
T ss_dssp EEEEEECCCSSCE-----------------EEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS-----
T ss_pred EEEEEEccccceE-----------------EEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc-----
Confidence 3456789999998 599999965 799999999999999987532 234455554
Q ss_pred cccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy2110 189 GALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG 268 (622)
Q Consensus 189 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~ 268 (622)
..|.+++|+|+|++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||++..
T Consensus 66 ------~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~ 139 (319)
T 3frx_A 66 ------HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139 (319)
T ss_dssp ------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC
T ss_pred ------ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEe
Q psy2110 269 ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS 348 (622)
Q Consensus 269 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 348 (622)
.......|...+.++.++|... ..+++..+++++.|+.|++||
T Consensus 140 ~~~~~~~h~~~v~~~~~~~~~~-------------------------------------~~~~~~~l~s~~~d~~i~~wd 182 (319)
T 3frx_A 140 CLATLLGHNDWVSQVRVVPNEK-------------------------------------ADDDSVTIISAGNDKMVKAWN 182 (319)
T ss_dssp EEEEECCCSSCEEEEEECCC-------------------------------------------CCEEEEEETTSCEEEEE
T ss_pred eEEEEeccCCcEEEEEEccCCC-------------------------------------CCCCccEEEEEeCCCEEEEEE
Confidence 3333334777788888877543 123566899999999999999
Q ss_pred CCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC
Q psy2110 349 CPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE 428 (622)
Q Consensus 349 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 428 (622)
+++++....+.+|...|.+++|+|++++|++++.|+.|++||+.. ...+..+. ....+.+++|+|++.
T Consensus 183 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~---------~~~~~~~~---~~~~v~~~~~sp~~~ 250 (319)
T 3frx_A 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA---------KKAMYTLS---AQDEVFSLAFSPNRY 250 (319)
T ss_dssp TTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT---------TEEEEEEE---CCSCEEEEEECSSSS
T ss_pred CCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CcEEEEec---CCCcEEEEEEcCCCC
Confidence 999999999999999999999999999999999999999999983 33444443 234678899999999
Q ss_pred eEEEeeCCCCeEEEEECCCCeeEEEEecCC-------CCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110 429 YVCAGSARQHALYIWEKSVGNLVKILHGTK-------GELLLDVVWHPVRPIIASIS-SGVVSLWAQN 488 (622)
Q Consensus 429 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~ 488 (622)
+|++++. ..+++|++..+..+..+..+. ...+.+++|+|+|++|++++ ||.|+||++.
T Consensus 251 ~la~~~~--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 251 WLAAATA--TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEEET--TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEEcC--CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 9998884 469999999888777765431 22389999999999999999 9999999984
No 22
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.9e-41 Score=333.12 Aligned_cols=285 Identities=16% Similarity=0.289 Sum_probs=252.8
Q ss_pred hhhccc-cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC
Q psy2110 76 QDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT 154 (622)
Q Consensus 76 ~~~~~~-~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~ 154 (622)
..+.+| ..+.+++|+|++++|++++.| ++|++||..+++....+..|...+ .+++|+|++.
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~D-g~v~vWd~~~~~~~~~~~~~~~~v-----------------~~~~~sp~g~ 119 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQD-GKVIVWDSFTTNKEHAVTMPCTWV-----------------MACAYAPSGC 119 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECSSSCC-----------------CEEEECTTSS
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCC-CeEEEEECCCCCcceEEecCCCCE-----------------EEEEECCCCC
Confidence 334444 457899999999999999975 999999999999999999998877 5999999999
Q ss_pred EEEEeeCCCcEEEEecCCccc------ccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Q psy2110 155 LLAVGCNDGRIVLWDFLTRGI------AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI 228 (622)
Q Consensus 155 ~l~s~~~dg~i~vw~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~ 228 (622)
+|++|+.|+.+++|++..... ...+..|. ..|.+++|+|+++.|++++.|++|++||+.+++.
T Consensus 120 ~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~ 188 (354)
T 2pbi_B 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT-----------NYLSACSFTNSDMQILTASGDGTCALWDVESGQL 188 (354)
T ss_dssp EEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS-----------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEeeCCCCEEEEEEeccccccccccceeeeccC-----------CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE
Confidence 999999999999999865421 12222222 4589999999999999999999999999999999
Q ss_pred EEEeccCCcCeeEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110 229 AKIISAHMHPVCSISWSR--NGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305 (622)
Q Consensus 229 ~~~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~ 305 (622)
+..+.+|...|.+++|+| ++++|++++.||.|++||+++++++..+. |...|.+++|+|++. ++++++.|+.+++|
T Consensus 189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lw 267 (354)
T 2pbi_B 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLY 267 (354)
T ss_dssp EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEE
Confidence 999999999999999987 57899999999999999999999998887 788999999999886 68899999999999
Q ss_pred EecCCceeecccCC--CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q psy2110 306 DTDGDHQIVPIDED--SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD 383 (622)
Q Consensus 306 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 383 (622)
|++....+..+..+ ...+.+++|+|+++++++|+.|+.|++||+.+++.+..+.+|...|++++|+|+|++|++++.|
T Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence 99987766555433 3467899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEe
Q psy2110 384 RLIRVYN 390 (622)
Q Consensus 384 ~~i~i~d 390 (622)
+.|++|+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999996
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.5e-41 Score=326.38 Aligned_cols=292 Identities=14% Similarity=0.172 Sum_probs=251.6
Q ss_pred ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccc
Q psy2110 115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI 194 (622)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (622)
+..+++.+|.+.| ++++|+|++++|++++.||+|++||+.++..+..+..+.
T Consensus 4 ~~~~~~~~h~~~V-----------------~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~----------- 55 (304)
T 2ynn_A 4 DIKKTFSNRSDRV-----------------KGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE----------- 55 (304)
T ss_dssp CCEEEEEEECSCE-----------------EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS-----------
T ss_pred eeEEeecCCCCce-----------------EEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccC-----------
Confidence 4567788999988 599999999999999999999999999988887777664
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEE
Q psy2110 195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE-CEQK 273 (622)
Q Consensus 195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~ 273 (622)
..|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++. ....
T Consensus 56 ~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~ 135 (304)
T 2ynn_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (304)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence 348999999999999999999999999999999999999999999999999999999999999999999999874 4455
Q ss_pred Ee-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc-CCCCceEEEEEee--CCCEEEEEecCCeEEEEeC
Q psy2110 274 YR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID-EDSDLSIVASFDR--RGQHVVTGNSKGKVLVLSC 349 (622)
Q Consensus 274 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~ 349 (622)
+. |...|.+++|+|.+..++++++.|+.+++||++.......+. .+...+..+.++| ++.+|++|+.|+.|++||+
T Consensus 136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~ 215 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (304)
T ss_dssp ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEET
T ss_pred hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeC
Confidence 55 788999999999776789999999999999998765554443 4557788888876 6789999999999999999
Q ss_pred CCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC-
Q psy2110 350 PALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE- 428 (622)
Q Consensus 350 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~- 428 (622)
++++++..+.+|...|.+++|+|++++|++++.|+.|++||+. ..+.+..+..+ ...+.+++|+|+++
T Consensus 216 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---------TYKVEKTLNVG--LERSWCIATHPTGRK 284 (304)
T ss_dssp TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT---------TCCEEEEECCS--SSSEEEEEECTTCGG
T ss_pred CCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC---------CCceeeeccCC--CccEEEEEECCCCCc
Confidence 9999999999999999999999999999999999999999998 33445555433 23456889999885
Q ss_pred -eEEEeeCCCCeEEEEECCC
Q psy2110 429 -YVCAGSARQHALYIWEKSV 447 (622)
Q Consensus 429 -~l~~~~~~d~~i~iwd~~~ 447 (622)
++++|+. + .+.+|++..
T Consensus 285 ~~~asg~~-~-g~~~~~~~~ 302 (304)
T 2ynn_A 285 NYIASGFD-N-GFTVLSLGN 302 (304)
T ss_dssp GCEEEEET-T-EEEEEECC-
T ss_pred eEEEEecC-C-ceEEEEecc
Confidence 5777763 4 577888754
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-42 Score=348.13 Aligned_cols=340 Identities=14% Similarity=0.197 Sum_probs=281.4
Q ss_pred hhhhhhccccceeEEEEcCCCC-EEEEecCCCCeEEEEEc----CCCc------eEEEEec----------cCcceeEEE
Q psy2110 73 QKLQDLVNKTMWKKCCFSGDGE-YVCAGSARQHALYIWEK----SVGN------LVKILHG----------TKGELLLDV 131 (622)
Q Consensus 73 ~~~~~~~~~~~~~~~~~sp~~~-~l~~~~~~~~~i~vwd~----~~~~------~~~~~~~----------~~~~v~~~~ 131 (622)
+.+....+...+.+++|+|+++ +|++++.+ +.|++|++ .+++ ....+.. |.+.+
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---- 111 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKN-SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQV---- 111 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEEEETB-TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCE----
T ss_pred hheeeeeccCceEEEEECCCCCcEEEEecCC-ceEEEEEEecccCCccccccccccccccccccccccccCCCCce----
Confidence 3344445556788999999999 99999975 99999999 8888 4554444 44444
Q ss_pred EeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEE
Q psy2110 132 VEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAV 211 (622)
Q Consensus 132 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 211 (622)
++++|+|++++|++++.||.|++|+ .+++....+..|. ..|.+++|+|++++|++
T Consensus 112 -------------~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~ 166 (425)
T 1r5m_A 112 -------------TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHR-----------APIVSVKWNKDGTHIIS 166 (425)
T ss_dssp -------------EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCC-----------SCEEEEEECTTSSEEEE
T ss_pred -------------EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCC-----------ccEEEEEECCCCCEEEE
Confidence 6999999999999999999999999 5666666666554 35899999999999999
Q ss_pred EeCCCeEEEEEcCCCceEEEeccCCcC---------------eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-
Q psy2110 212 GCNDGRIVLWDFLTRGIAKIISAHMHP---------------VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR- 275 (622)
Q Consensus 212 ~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 275 (622)
++.++.|++||+.+++.+..+..+... +.+++|++++ .+++++.++.|++||+.+++....+.
T Consensus 167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~ 245 (425)
T 1r5m_A 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIG 245 (425)
T ss_dssp EETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECC
T ss_pred EecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeecc
Confidence 999999999999999999988888777 9999999875 68899999999999999998887776
Q ss_pred CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEE
Q psy2110 276 FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK 355 (622)
Q Consensus 276 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 355 (622)
+...+.+++|+|+++ ++++++.++.+++||++.......+..|...+.+++|+|++ ++++++.+|.|++||+++++.+
T Consensus 246 ~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 246 HHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL 323 (425)
T ss_dssp CSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE
T ss_pred CCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe
Confidence 788999999999987 67888899999999999988888888899999999999999 9999999999999999999999
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCC-----------CCCCcceeeeccccceeeeeEEEc
Q psy2110 356 ASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKD-----------GDPEPIQKLQDLVNKTMWKKCCFS 424 (622)
Q Consensus 356 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~s 424 (622)
..+..|...|.+++|+|++++|++++.|+.|++|++......... .....+..+..+.....+.+++|+
T Consensus 324 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 403 (425)
T 1r5m_A 324 ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN 403 (425)
T ss_dssp EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC
T ss_pred EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc
Confidence 999999999999999999999999999999999999853310000 000134444433222278899999
Q ss_pred CCCCeEEEeeCCCCeEEEEECC
Q psy2110 425 GDGEYVCAGSARQHALYIWEKS 446 (622)
Q Consensus 425 pdg~~l~~~~~~d~~i~iwd~~ 446 (622)
|++++|++++. |+.|++|++.
T Consensus 404 ~~~~~l~~~~~-dg~i~iw~~~ 424 (425)
T 1r5m_A 404 CAGNKISVAYS-LQEGSVVAIP 424 (425)
T ss_dssp TTSSEEEEEES-SSCCEEEECC
T ss_pred CCCceEEEEec-CceEEEEeec
Confidence 99999999997 9999999985
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-42 Score=341.19 Aligned_cols=308 Identities=13% Similarity=0.167 Sum_probs=239.7
Q ss_pred eecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCC-----CCeEEEEEcCCCce---
Q psy2110 45 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR-----QHALYIWEKSVGNL--- 116 (622)
Q Consensus 45 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~-----~~~i~vwd~~~~~~--- 116 (622)
.++.+.....|++.... ...+...+.+++|||||++||+++.+ |+.|++|+..++..
T Consensus 21 ~~~g~~~~~~w~~p~~~---------------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 21 QSNGSSKGSAWGRPVTA---------------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred ecCCCccccccCCCCCC---------------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence 44556667788764211 11355678899999999999999863 47899998876643
Q ss_pred -EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccccc
Q psy2110 117 -VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCIS 195 (622)
Q Consensus 117 -~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (622)
.....+|...| ++++|+|++. +++++.||+|+|||+.+++........... ...
T Consensus 86 ~~~~~~~~~~~V-----------------~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~-------h~~ 140 (357)
T 4g56_B 86 LCTAGVQTEAGV-----------------TDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYE-------HDD 140 (357)
T ss_dssp GCSEEEECSSCE-----------------EEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECC-------CSS
T ss_pred EecccCCCCCCE-----------------EEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCC-------CCC
Confidence 23445666666 5999999986 556788999999999987655433221110 114
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110 196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKY 274 (622)
Q Consensus 196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~ 274 (622)
.|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|++++|++++. ++++++.|+.|++||+++++....+
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~ 220 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI 220 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee
Confidence 689999999999999999999999999999999999999999999999999875 7899999999999999998877665
Q ss_pred e---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCC
Q psy2110 275 R---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCP 350 (622)
Q Consensus 275 ~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~ 350 (622)
. +...+.+++|+|++..++++++.++.|++||+++...+..+..|...+.+++|+|++ ++|++|+.|++|+|||++
T Consensus 221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence 4 556799999999988899999999999999999999999999999999999999987 578999999999999999
Q ss_pred CccEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeccc
Q psy2110 351 ALELKASFKASTTAIKSIEFAR-RGNCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 351 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~i~d~~~ 393 (622)
+++++..+ +|...|++++|+| ++++|++++.|++|++|++..
T Consensus 301 ~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 301 FSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred CCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 98877654 7999999999998 799999999999999999973
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.9e-41 Score=326.95 Aligned_cols=282 Identities=13% Similarity=0.191 Sum_probs=253.1
Q ss_pred ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110 81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC 160 (622)
Q Consensus 81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 160 (622)
...+.+++|+|++++|++++.| +.|++||+.+++.+..+.+|...+ .+++|+|++++|++|+
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~d-g~v~lWd~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~l~s~s 74 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQVEVRSIQVTETPV-----------------RAGKFIARKNWIIVGS 74 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCE-----------------EEEEEEGGGTEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCC-CcEEEEECCCCceeEEeeccCCcE-----------------EEEEEeCCCCEEEEEC
Confidence 3457899999999999999975 999999999999999999999988 5999999999999999
Q ss_pred CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceEEEeccCCcCe
Q psy2110 161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR-GIAKIISAHMHPV 239 (622)
Q Consensus 161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v 239 (622)
.|++|++||+.+++.+..+..|. ..|.+++|+|++++|++|+.|+.|++||+.++ .....+.+|...|
T Consensus 75 ~d~~i~vwd~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v 143 (304)
T 2ynn_A 75 DDFRIRVFNYNTGEKVVDFEAHP-----------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (304)
T ss_dssp TTSEEEEEETTTCCEEEEEECCS-----------SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE
T ss_pred CCCEEEEEECCCCcEEEEEeCCC-----------CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcE
Confidence 99999999999998888887775 35899999999999999999999999999887 4557788999999
Q ss_pred eEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCC-CCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110 240 CSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPR-NDHMFLVCPMRHAAVLVDTDGDHQIVP 315 (622)
Q Consensus 240 ~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~ 315 (622)
.+++|+| ++.+|++|+.|++|++||+.++.....+. +...+..+.|+|. ...++++++.|+.|++||+++...+..
T Consensus 144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~ 223 (304)
T 2ynn_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223 (304)
T ss_dssp EEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee
Confidence 9999999 67899999999999999998877655554 5578999999884 334789999999999999999999999
Q ss_pred ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEecc
Q psy2110 316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGN--CLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~d~~i~i~d~~ 392 (622)
+..|...+.+++|+|++++|++|+.||.|++||+.+++++..+..|...+.+++|+|++. ++++++. ..+.+|++.
T Consensus 224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~~ 301 (304)
T 2ynn_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGFTVLSLG 301 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEET-TEEEEEECC
T ss_pred eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecC-CceEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999885 4666665 456777765
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.3e-41 Score=333.47 Aligned_cols=320 Identities=16% Similarity=0.273 Sum_probs=271.9
Q ss_pred CcceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccc
Q psy2110 2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK 81 (622)
Q Consensus 2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (622)
+.|.+++|||||+++|++..++.+.+|.... ....+....+.
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~h~ 51 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPR--------------------------------------HARQINTLNHG 51 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCS--------------------------------------EEEEEEEECCS
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCC--------------------------------------ccccceeccCC
Confidence 4689999999999999888777665554211 11111222345
Q ss_pred cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCce---EEEEe--ccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110 82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL---VKILH--GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL 156 (622)
Q Consensus 82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~---~~~~~--~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 156 (622)
..+.+++|+|++++|++++ + +.|++|++.+++. +..+. +|...+ ++++|+|++++|
T Consensus 52 ~~v~~~~~~~~~~~l~~~~-d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~l 112 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGG-K-GCVKVWDISHPGNKSPVSQLDCLNRDNYI-----------------RSCKLLPDGCTL 112 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-B-SEEEEEETTSTTCCSCSEEEECSCTTSBE-----------------EEEEECTTSSEE
T ss_pred CceEEEEEecCCcEEEEcC-C-CeEEEEECCCCCceeeeecccccCCCCcE-----------------EEEEEcCCCCEE
Confidence 5677999999999999998 4 9999999987653 33333 677766 599999999999
Q ss_pred EEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEecc
Q psy2110 157 AVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA 234 (622)
Q Consensus 157 ~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 234 (622)
++++.||.|++|++.+++ ....+..+. ..+.+++|+|++++|++++.++.|++||+.+++....+..
T Consensus 113 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~ 181 (337)
T 1gxr_A 113 IVGGEASTLSIWDLAAPTPRIKAELTSSA-----------PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG 181 (337)
T ss_dssp EEEESSSEEEEEECCCC--EEEEEEECSS-----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEcCCCcEEEEECCCCCcceeeecccCC-----------CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec
Confidence 999999999999998876 333333332 3589999999999999999999999999999999999999
Q ss_pred CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceee
Q psy2110 235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIV 314 (622)
Q Consensus 235 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 314 (622)
|...|.+++|+|++++|++++.|+.|++||+++++....+.+...+.+++|+|+++ ++++++.++.+++||+++... .
T Consensus 182 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~~-~ 259 (337)
T 1gxr_A 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDK-Y 259 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCE-E
T ss_pred ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCCe-E
Confidence 99999999999999999999999999999999999999999999999999999987 577888899999999988764 4
Q ss_pred cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 315 PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
.+..|...+.+++|+|+++++++++.+|.|++|++.+++.+.. ..|...|.+++|+|++++|++++.|+.|++|++.
T Consensus 260 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 5677889999999999999999999999999999999988754 4577899999999999999999999999999974
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.9e-42 Score=335.32 Aligned_cols=296 Identities=15% Similarity=0.155 Sum_probs=238.1
Q ss_pred ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110 81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC 160 (622)
Q Consensus 81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 160 (622)
...+.+++|||||++|++++ + +++++||............+....... ...+...|.+++|+|++ .|++|+
T Consensus 30 ~~~v~~~~fs~dG~~l~~~s-d-~~~r~Wd~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d~-~l~~~s 100 (344)
T 4gqb_B 30 ERQLEAARYRSDGALLLGAS-S-LSGRCWAGSLWLFKDPCAAPNEGFCSA------GVQTEAGVADLTWVGER-GILVAS 100 (344)
T ss_dssp CSEEEEEEECTTSCEEEEEE-C-CSSSCCCEEEEEESSGGGTTCGGGCSE------EEEESSCEEEEEEETTT-EEEEEE
T ss_pred cCCEEEEEECCCCCEEEEEe-C-CceEEeeceeeeeccccccCCcceeee------eeccCCCEEEEEEeCCC-eEEEEE
Confidence 34577999999999999888 3 678888732100000000111110000 01112234799999985 688999
Q ss_pred CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCee
Q psy2110 161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVC 240 (622)
Q Consensus 161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 240 (622)
.||+|+|||+.+++....+...... +...|.+++|+|+|++|++|+.|+.|++||+.+++++..+.+|...|+
T Consensus 101 ~dg~v~lWd~~~~~~~~~~~~~~~~-------H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 101 DSGAVELWELDENETLIVSKFCKYE-------HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp TTSEEEEEEECTTSSCEEEEEEEEC-------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCEEEEEeccCCCceeEeeccccC-------CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 9999999999998766544321110 014589999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEe---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110 241 SISWSRNGY-KIISASTDNNVCIWDVLTGECEQKYR---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316 (622)
Q Consensus 241 ~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 316 (622)
+++|++++. +|++++.|++|++||+++++....+. +...+.+++|+|++..++++++.|+.|++||+++.+.+..+
T Consensus 174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~ 253 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS 253 (344)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE
T ss_pred EEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE
Confidence 999999874 78999999999999999999888775 44578999999998889999999999999999999999999
Q ss_pred cCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeccc
Q psy2110 317 DEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGN-CLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 317 ~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~i~d~~~ 393 (622)
..|...|.+++|+|++ ++|++|+.|++|++||+.+++++ .+.+|...|++++|+|+++ +|++++.|++|++|++..
T Consensus 254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999999999999998 57999999999999999988765 5789999999999999986 566889999999999974
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=333.41 Aligned_cols=290 Identities=15% Similarity=0.183 Sum_probs=231.3
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL 224 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~ 224 (622)
.+++|+|||++|++++ |+++++||............+..............|.+++|+|++ .|++|+.||.|++||+.
T Consensus 34 ~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~ 111 (344)
T 4gqb_B 34 EAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELD 111 (344)
T ss_dssp EEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEecc
Confidence 6999999999999887 778888874322111111111111111112223468999999985 67899999999999999
Q ss_pred CCceEEE----eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110 225 TRGIAKI----ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMR 299 (622)
Q Consensus 225 ~~~~~~~----~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~ 299 (622)
+++.... +.+|.+.|++++|+|+|++|++|+.|++|++||+.+++++..+. |...|.+++|+|++..++++++.|
T Consensus 112 ~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D 191 (344)
T 4gqb_B 112 ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSED 191 (344)
T ss_dssp TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred CCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccc
Confidence 8875543 45899999999999999999999999999999999999999887 889999999999998899999999
Q ss_pred CcEEEEEecCCceeeccc--CCCCceEEEEEeeC-CCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC-C
Q psy2110 300 HAAVLVDTDGDHQIVPID--EDSDLSIVASFDRR-GQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG-N 375 (622)
Q Consensus 300 ~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~ 375 (622)
+.|++||+++.+....+. .+...+.+++|+|+ ++++++|+.||.|++||+++++++..+.+|...|++++|+|++ +
T Consensus 192 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~ 271 (344)
T 4gqb_B 192 NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVP 271 (344)
T ss_dssp SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSC
T ss_pred cccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCe
Confidence 999999999887766654 45567889999985 5788999999999999999999999999999999999999998 5
Q ss_pred EEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCe-EEEeeCCCCeEEEEECCCCe
Q psy2110 376 CLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEY-VCAGSARQHALYIWEKSVGN 449 (622)
Q Consensus 376 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~d~~i~iwd~~~~~ 449 (622)
+|++++.|++|+|||+.. .+ +..+.. +...+.+++|+|++++ |++++. |++|++|++.+..
T Consensus 272 ~lasgs~D~~i~vwd~~~---------~~-~~~~~~--H~~~V~~v~~sp~~~~llas~s~-D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 272 FLASLSEDCSLAVLDSSL---------SE-LFRSQA--HRDFVRDATWSPLNHSLLTTVGW-DHQVVHHVVPTEP 333 (344)
T ss_dssp CEEEEETTSCEEEECTTC---------CE-EEEECC--CSSCEEEEEECSSSTTEEEEEET-TSCEEEEECCC--
T ss_pred EEEEEeCCCeEEEEECCC---------Cc-EEEEcC--CCCCEEEEEEeCCCCeEEEEEcC-CCeEEEEECCCCC
Confidence 789999999999999873 12 223333 3456789999999975 556776 9999999998654
No 30
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.2e-42 Score=348.65 Aligned_cols=340 Identities=13% Similarity=0.168 Sum_probs=281.7
Q ss_pred eEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCc
Q psy2110 85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 164 (622)
Q Consensus 85 ~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~ 164 (622)
.+++|+|++++|++++.+ +.|++||+.+++....+..| ..+ ....|+|++++|++|+.||.
T Consensus 60 ~~~~~s~~g~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~-~~~-----------------~~~~~~~~~~~l~~~~~dg~ 120 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLD-GHDFLFNTIIRDGSKMLKRA-DYT-----------------AVDTAKLQMRRFILGTTEGD 120 (420)
T ss_dssp TTCEEEEEETTEEEEEET-TEEEEEECCSEETTTTSCSC-CEE-----------------EEEEECSSSCEEEEEETTSC
T ss_pred cceeeeecCCeEEEEEcC-CcEEEEEecccceeeEEecC-Cce-----------------EEEEEecCCCEEEEEECCCC
Confidence 468999999999999986 99999999988776666665 222 36678999999999999999
Q ss_pred EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEE
Q psy2110 165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISW 244 (622)
Q Consensus 165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 244 (622)
|++||+.+++....+..|. ..|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|
T Consensus 121 i~iwd~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 189 (420)
T 3vl1_A 121 IKVLDSNFNLQREIDQAHV-----------SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI 189 (420)
T ss_dssp EEEECTTSCEEEEETTSSS-----------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred EEEEeCCCcceeeeccccc-----------CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence 9999999888777666654 35899999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEEe----CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCC
Q psy2110 245 SRNGYKIISASTDNNVCIWDVLTGECEQKYR----FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDS 320 (622)
Q Consensus 245 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 320 (622)
+|++++|++++.|+.|++||+++++.+..+. +...+.++++.|.+... ....+.
T Consensus 190 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------------~~~~~~ 247 (420)
T 3vl1_A 190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------------------LHEIST 247 (420)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------------------CGGGCC
T ss_pred cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------------------eeeccc
Confidence 9999999999999999999999999998886 55788888888765432 122345
Q ss_pred CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-cCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccccC
Q psy2110 321 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-ASTTAIKSIEFARRGN-CLLVNTGDRLIRVYNHQEVLNAG 398 (622)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~ 398 (622)
..+.+++|+|++++|++++.||.|++||+++++.+..+. .|...|.+++|+|+++ +|++++.|+.|++||++.
T Consensus 248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~----- 322 (420)
T 3vl1_A 248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS----- 322 (420)
T ss_dssp CCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC-----
T ss_pred CcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC-----
Confidence 567788999999999999999999999999998877765 5788999999999999 999999999999999983
Q ss_pred CCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC---------eeEEEEecCCCCceeEEEECC
Q psy2110 399 KDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG---------NLVKILHGTKGELLLDVVWHP 469 (622)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~v~~v~~sp 469 (622)
...++..+..+. ...+.++ +++++++|++++. |+.|++|++... .....+.+|.+. |.+++|+|
T Consensus 323 ---~~~~~~~~~~~~-~~~v~~~-~~~~~~~l~s~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~ 395 (420)
T 3vl1_A 323 ---PECPVGEFLINE-GTPINNV-YFAAGALFVSSGF-DTSIKLDIISDPESERPAIEFETPTFLVSNDDA-VSQFCYVS 395 (420)
T ss_dssp ---TTSCSEEEEEST-TSCEEEE-EEETTEEEEEETT-TEEEEEEEECCTTCCSCEECTTSCEEECCSSCC-CCEEEEEC
T ss_pred ---CcCchhhhhccC-CCCceEE-EeCCCCEEEEecC-CccEEEEeccCCCCCccceeccCccEEccCCcc-eEEEEEcc
Confidence 112344554332 2344555 5568889999997 999999998763 222345566666 99999999
Q ss_pred CCC---EEEEEe-CCcEEEeecC
Q psy2110 470 VRP---IIASIS-SGVVSLWAQN 488 (622)
Q Consensus 470 ~~~---~l~s~~-dg~v~iw~~~ 488 (622)
+++ .|++++ +|.+.+|++.
T Consensus 396 ~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 396 DDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CSSSSCEEEEEETTTEEEEEESC
T ss_pred CCCCcceEEEEcCCceEEEEecc
Confidence 999 555555 9999999985
No 31
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-43 Score=354.92 Aligned_cols=357 Identities=16% Similarity=0.198 Sum_probs=277.3
Q ss_pred ceeEEEEcCCCC-EEEEe----------cCCCCeEEEEEcCCCce---EEEEeccCcceeEEEEeecCccccccceeEEE
Q psy2110 83 MWKKCCFSGDGE-YVCAG----------SARQHALYIWEKSVGNL---VKILHGTKGELLLDVVEFDGALDCISLAVTCA 148 (622)
Q Consensus 83 ~~~~~~~sp~~~-~l~~~----------~~~~~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~ 148 (622)
.+.+++|+|+++ +|+++ +. ++.|++||+.+++. +..+ .|...+ ++++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~-d~~v~iw~~~~~~~~~~~~~~-~~~~~v-----------------~~~~ 74 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFST-DSSLELWSLLAADSEKPIASL-QVDSKF-----------------NDLD 74 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCC-CCCCEEEESSSGGGCSCSCCC-CCSSCE-----------------EEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCC-CCeEEEEEccCCCCCcEEEEE-ecCCce-----------------EEEE
Confidence 456799999998 88888 54 48999999988763 3333 466666 6999
Q ss_pred EcCCCCEEEEeeCCCcEEEEecCC----cccccccccccCCCcccccccccceEEEEECCC-CCEEEEEeCCCeEEEEEc
Q psy2110 149 FNKRGTLLAVGCNDGRIVLWDFLT----RGIAKIISAHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDF 223 (622)
Q Consensus 149 ~s~d~~~l~s~~~dg~i~vw~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iwd~ 223 (622)
|+|++++|++++.||.|++|++.+ ......+..|. ..|.+++|+|+ +++|++++.|+.|++||+
T Consensus 75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS-----------SSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS-----------SCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCc-----------cceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 999999999999999999999987 23555555544 35889999998 899999999999999999
Q ss_pred CCCc------eEE---EeccCCcCeeEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEEeC-------CCCeEEEEEe
Q psy2110 224 LTRG------IAK---IISAHMHPVCSISWSRN-GYKIISASTDNNVCIWDVLTGECEQKYRF-------PSPILKVQFH 286 (622)
Q Consensus 224 ~~~~------~~~---~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~ 286 (622)
.+++ ... .+..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.. ...+.+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence 9876 332 34679999999999998 78999999999999999999999888874 6789999999
Q ss_pred CCCCeEEEEeeCCC---cEEEEEecCC-ceeeccc-CCCCceEEEEEee-CCCEEEEEecCCeEEEEeCCCccEEEEEec
Q psy2110 287 PRNDHMFLVCPMRH---AAVLVDTDGD-HQIVPID-EDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALELKASFKA 360 (622)
Q Consensus 287 ~~~~~~~~~~~~~~---~i~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 360 (622)
|++..++++++.++ .+++||+++. .....+. .|...+.+++|+| ++++|++++.||.|++||+++++++..+..
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence 99988899999998 9999999986 5666777 7999999999999 899999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCe
Q psy2110 361 STTAIKSIEFARRG-NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHA 439 (622)
Q Consensus 361 ~~~~i~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~ 439 (622)
|...|.+++|+|++ .+|++++.|+.|++|++...... ................|.+.+..++.++. .+.
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 373 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT---------LDEQETETKQQESETDFWNNVSREESKEK-PSV 373 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS---------SCC----------------------CCSC-CCS
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC---------cccccccccccCCcccccccccccccccc-ccc
Confidence 99999999999999 89999999999999999842211 11100000111122344444444443332 221
Q ss_pred EEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110 440 LYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ 489 (622)
Q Consensus 440 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~ 489 (622)
+ .+ .....|.. ++.+++|+|+|++|++++ |+.|+||++..
T Consensus 374 ~---~~------~~~~~~~~-~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 374 F---HL------QAPTWYGE-PSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp S---CC------CCCSTTCC-CSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred c---cc------cCCccccC-CccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 1 11 11122343 388999999999999999 99999999853
No 32
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.4e-41 Score=331.19 Aligned_cols=299 Identities=14% Similarity=0.281 Sum_probs=242.1
Q ss_pred ceEEEEeccCcceeEEEEeecCccccccceeEEEE-----cC-CCCEEEEeeCCCcEEEEecCCcc-------ccccccc
Q psy2110 115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAF-----NK-RGTLLAVGCNDGRIVLWDFLTRG-------IAKIISA 181 (622)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~-----s~-d~~~l~s~~~dg~i~vw~~~~~~-------~~~~~~~ 181 (622)
+....+.+|.+.| ++++| ++ ++++|++|+.|++|++|++...+ ....+..
T Consensus 12 ~~~~~l~gH~~~V-----------------~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~ 74 (343)
T 2xzm_R 12 VKRGILEGHSDWV-----------------TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG 74 (343)
T ss_dssp EEEEEEECCSSCE-----------------EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC
T ss_pred eeeeeeccchhhh-----------------hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc
Confidence 4567789999988 59999 76 89999999999999999997643 2233334
Q ss_pred ccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEE
Q psy2110 182 HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVC 261 (622)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~ 261 (622)
|. ..|.+++|+|++.+|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 75 h~-----------~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~ 143 (343)
T 2xzm_R 75 HN-----------HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIK 143 (343)
T ss_dssp CS-----------SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEE
T ss_pred CC-----------CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEE
Confidence 43 3589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEE---eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEE
Q psy2110 262 IWDVLTGECEQKY---RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTG 338 (622)
Q Consensus 262 iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (622)
+||+......... .+...+.+++|+|++... ..+.|.+.+++++
T Consensus 144 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------------------~~~~~~~~~l~s~ 190 (343)
T 2xzm_R 144 LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA---------------------------------NKVQPFAPYFASV 190 (343)
T ss_dssp EEESSSCEEEECCTTTSCSSCEEEEEECCCCCSC---------------------------------SCCCSSCCEEEEE
T ss_pred EEeccCCceeeeecccCCCceeeeeeeccccccc---------------------------------cccCCCCCEEEEE
Confidence 9999843332222 255678888888865310 0123556899999
Q ss_pred ecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceee
Q psy2110 339 NSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMW 418 (622)
Q Consensus 339 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (622)
+.||.|++|| .+.+....+..|...|.+++|+|+|++|++++.|+.|++||+.. .......+. ....+
T Consensus 191 ~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~--------~~~~~~~~~---~~~~v 258 (343)
T 2xzm_R 191 GWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN--------LTYPQREFD---AGSTI 258 (343)
T ss_dssp ETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC--------CSSCSEEEE---CSSCE
T ss_pred cCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC--------Ccccceeec---CCCcE
Confidence 9999999999 45677888999999999999999999999999999999999852 112222221 22347
Q ss_pred eeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEE--EEe-----------cCCCCceeEEEECCCCCEEEEEe-CCcEEE
Q psy2110 419 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK--ILH-----------GTKGELLLDVVWHPVRPIIASIS-SGVVSL 484 (622)
Q Consensus 419 ~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~--~~~-----------~~~~~~v~~v~~sp~~~~l~s~~-dg~v~i 484 (622)
.+++|+|++++++++. |+.|++|++.+++... .+. +|... |.+++|+|++++|++++ ||+|++
T Consensus 259 ~~v~~sp~~~~la~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~g~~l~sg~~Dg~v~~ 335 (343)
T 2xzm_R 259 NQIAFNPKLQWVAVGT--DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ-CTSLAWNALGKKLFAGFTDGVIRT 335 (343)
T ss_dssp EEEEECSSSCEEEEEE--SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC-EEEEEECSSSCCEEEEETTSEEEE
T ss_pred EEEEECCCCCEEEEEC--CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc-eEEEEECCCCCeEEEecCCceEEE
Confidence 8899999999887665 6679999998876543 443 55555 99999999999999999 999999
Q ss_pred eecCC
Q psy2110 485 WAQNQ 489 (622)
Q Consensus 485 w~~~~ 489 (622)
|++..
T Consensus 336 w~~~~ 340 (343)
T 2xzm_R 336 FSFET 340 (343)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99853
No 33
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.5e-42 Score=345.53 Aligned_cols=305 Identities=14% Similarity=0.249 Sum_probs=259.8
Q ss_pred cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEE
Q psy2110 164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSIS 243 (622)
Q Consensus 164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 243 (622)
.+..|+.....+...+.+|. ..|.+++|+|++++|++|+.|++|++||+.+++....+..|...|.+++
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~-----------~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~ 115 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHS-----------GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECA 115 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCS-----------SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCE
T ss_pred cccccccceeEEeecccccc-----------cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEE
Confidence 34456655555666677765 3599999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCc-------EEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110 244 WSRNGYKIISASTDNNVCIWDVLTGE-------CEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP 315 (622)
Q Consensus 244 ~s~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 315 (622)
|+|+|++|++++.|+.+++||+.+.. ....+. |...+.++.|+|++...+++++.|+.+++||+.++..+..
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 99999999999999999999987532 122233 7788999999998887899999999999999998877765
Q ss_pred c-----cCCCCceEEEEEee-CCCEEEEEecCCeEEEEeCC-CccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110 316 I-----DEDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCP-ALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV 388 (622)
Q Consensus 316 ~-----~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 388 (622)
+ ..|...+.++++++ ++.++++|+.|+.|++||++ ..+.+..+.+|...|++++|+|++++|++++.|++|++
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~l 275 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEE
T ss_pred eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEE
Confidence 5 56888899999977 88999999999999999998 55788889999999999999999999999999999999
Q ss_pred EecccccccCCCCCCCcceeeecccc-----ceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEE----ecCCC
Q psy2110 389 YNHQEVLNAGKDGDPEPIQKLQDLVN-----KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL----HGTKG 459 (622)
Q Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~----~~~~~ 459 (622)
||++. ...+..+..... ...+.+++|+|+|++|++|+. |+.|++||+.+++.+..+ .+|.+
T Consensus 276 wd~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~h~~ 345 (380)
T 3iz6_a 276 FDMRT---------GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVWDTLLAEMVLNLGTLQNSHEG 345 (380)
T ss_dssp EETTT---------TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-TSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred EECCC---------CcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-CCCEEEEECCCCceEEEEecccCCCCC
Confidence 99983 223333322111 123678999999999999997 999999999999988877 56776
Q ss_pred CceeEEEECCCCCEEEEEe-CCcEEEeecCCc
Q psy2110 460 ELLLDVVWHPVRPIIASIS-SGVVSLWAQNQV 490 (622)
Q Consensus 460 ~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~~ 490 (622)
. |++++|+|++++|++++ ||+|++|++.+.
T Consensus 346 ~-v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 346 R-ISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp C-CCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred c-eEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 6 99999999999999999 999999998653
No 34
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-41 Score=336.41 Aligned_cols=319 Identities=15% Similarity=0.217 Sum_probs=234.3
Q ss_pred EEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC-----
Q psy2110 87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN----- 161 (622)
Q Consensus 87 ~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~----- 161 (622)
+.+.+++.++.+.+ +.....|++.... ..+|...| ++++|+|||++||+|+.
T Consensus 11 ~d~g~~~~~~~~~g--~~~~~~w~~p~~~----p~~H~~~V-----------------~~v~fSpDG~~las~s~d~~~~ 67 (357)
T 4g56_B 11 VDLGTENLYFQSNG--SSKGSAWGRPVTA----PACMEVQI-----------------GAVRYRRDGALLLAASSLSSRT 67 (357)
T ss_dssp -----------------------------------CCCSEE-----------------EEEEECSSSCEEEEEECSSSSS
T ss_pred CCCCccceEEecCC--CccccccCCCCCC----cccccCCE-----------------EEEEECCCCCEEEEEcCCCCcc
Confidence 55666666665554 2577889875433 35788887 59999999999999997
Q ss_pred -CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE----EeccCC
Q psy2110 162 -DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK----IISAHM 236 (622)
Q Consensus 162 -dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~ 236 (622)
|+.|++|+..++.....+..... .....|.+++|+|++++| +++.||.|++||+.+++... ...+|.
T Consensus 68 wd~~v~~~~~~~~~~~~~~~~~~~-------~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~ 139 (357)
T 4g56_B 68 WGGSIWVFKDPEGAPNESLCTAGV-------QTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHD 139 (357)
T ss_dssp CCEEEEEESSCC---CGGGCSEEE-------ECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCS
T ss_pred ccCeEEEEECCCCCcceeEecccC-------CCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCC
Confidence 77899999887755444322111 111458999999998654 67789999999998876542 345799
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP 315 (622)
Q Consensus 237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 315 (622)
..|++++|+|++++|++++.|+.|++||+++++++..+. |...|.+++|+|++..++++++.|+.+++||+++......
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee
Confidence 999999999999999999999999999999999999887 7889999999999988899999999999999998766554
Q ss_pred c--cCCCCceEEEEEeeC-CCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEec
Q psy2110 316 I--DEDSDLSIVASFDRR-GQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG-NCLLVNTGDRLIRVYNH 391 (622)
Q Consensus 316 ~--~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~i~d~ 391 (622)
+ ..+...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+..|...|++++|+|++ ++|++++.|++|+|||+
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 4 456677899999997 4688999999999999999999999999999999999999987 57899999999999998
Q ss_pred ccccccCCCCCCCcceeeeccccceeeeeEEEcC-CCCeEEEeeCCCCeEEEEECCCCe
Q psy2110 392 QEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG-DGEYVCAGSARQHALYIWEKSVGN 449 (622)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~d~~i~iwd~~~~~ 449 (622)
+. .+.+..+ .+...+.+++|+| ++++|++++. |++|++|++.+..
T Consensus 300 ~~---------~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s~-Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 300 DF---------SEVFRDL---SHRDFVTGVAWSPLDHSKFTTVGW-DHKVLHHHLPSEG 345 (357)
T ss_dssp TS---------CEEEEEC---CCSSCEEEEEECSSSTTEEEEEET-TSCEEEEECC---
T ss_pred CC---------CcEeEEC---CCCCCEEEEEEeCCCCCEEEEEcC-CCeEEEEECCCCC
Confidence 73 2233222 2445678999999 8999999997 9999999987643
No 35
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.8e-40 Score=320.25 Aligned_cols=294 Identities=23% Similarity=0.402 Sum_probs=249.7
Q ss_pred CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccc
Q psy2110 114 GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDC 193 (622)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (622)
......+.+|...| ++++|+|++++|++++.||.|++|++.+++....+..|.
T Consensus 13 ~~~~~~~~gh~~~v-----------------~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~---------- 65 (312)
T 4ery_A 13 YALKFTLAGHTKAV-----------------SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK---------- 65 (312)
T ss_dssp CEEEEEECCCSSCE-----------------EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS----------
T ss_pred ceeEEEEcccCCcE-----------------EEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCC----------
Confidence 34566788999888 599999999999999999999999999988877776664
Q ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110 194 ISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK 273 (622)
Q Consensus 194 ~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 273 (622)
..|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..
T Consensus 66 -~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 144 (312)
T 4ery_A 66 -LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 144 (312)
T ss_dssp -SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred -CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence 3489999999999999999999999999999999999999999999999999999999999999999999998776555
Q ss_pred EeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc
Q psy2110 274 YRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE 353 (622)
Q Consensus 274 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 353 (622)
+. .|...+.+++|+|+++++++++.||.|++||+++++
T Consensus 145 ~~------------------------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 145 LP------------------------------------------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp EC------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred ec------------------------------------------CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 43 123345566777777888889999999999999888
Q ss_pred EEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEc-CCCCeEE
Q psy2110 354 LKASFK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFS-GDGEYVC 431 (622)
Q Consensus 354 ~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~ 431 (622)
.+..+. .+...+..++|+|++++|++++.|+.|++||+.. ...+..+..+..........++ +++++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
T 4ery_A 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------GKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253 (312)
T ss_dssp EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT---------TEEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC---------CcEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence 877664 5567899999999999999999999999999983 3445555544443333333444 6788999
Q ss_pred EeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe---CCcEEEeecC
Q psy2110 432 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS---SGVVSLWAQN 488 (622)
Q Consensus 432 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~---dg~v~iw~~~ 488 (622)
+++. |+.|++||+.+++.+..+.+|.+. |.+++|+|++++|++++ |++|++|+.+
T Consensus 254 sg~~-dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 254 SGSE-DNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCT-TSCEEEEETTTCCEEEEECCCSSC-EEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EECC-CCEEEEEECCCchhhhhhhccCCc-EEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9997 999999999999999999999876 99999999999999885 8999999863
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.9e-42 Score=343.45 Aligned_cols=308 Identities=19% Similarity=0.316 Sum_probs=264.5
Q ss_pred CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCccccccccccc
Q psy2110 104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM 183 (622)
Q Consensus 104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 183 (622)
..+..|+.....+.+.+.+|.+.| ++++|+|++++|++|+.||+|+|||+.+++....+..|.
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V-----------------~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~ 108 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKV-----------------YSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC 108 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCE-----------------EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC
T ss_pred ccccccccceeEEeecccccccEE-----------------EEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC
Confidence 345567777788889999999999 599999999999999999999999999988887777665
Q ss_pred CCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-------eEEEeccCCcCeeEEEEcCC-CCEEEEEe
Q psy2110 184 HPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG-------IAKIISAHMHPVCSISWSRN-GYKIISAS 255 (622)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~-~~~l~s~~ 255 (622)
. .|.+++|+|+|++|++|+.|+.+++|++.+.. ....+.+|.+.|.++.|+|+ +..|++++
T Consensus 109 ~-----------~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s 177 (380)
T 3iz6_a 109 P-----------WVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS 177 (380)
T ss_dssp T-----------TCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEEC
T ss_pred C-----------CEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEEC
Confidence 3 47889999999999999999999999987532 34567899999999999996 45799999
Q ss_pred CCCcEEEEECCCCcEEEEEe------CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec-CCceeecccCCCCceEEEEE
Q psy2110 256 TDNNVCIWDVLTGECEQKYR------FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD-GDHQIVPIDEDSDLSIVASF 328 (622)
Q Consensus 256 ~d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~ 328 (622)
.|++|++||+.+++.+..+. |...+.+++|++.+..++++++.|+.+++||++ ....+..+..|...|.+++|
T Consensus 178 ~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~ 257 (380)
T 3iz6_a 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKF 257 (380)
T ss_dssp TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEE
T ss_pred CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEE
Confidence 99999999999999988772 667899999998666789999999999999998 45677788899999999999
Q ss_pred eeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-------CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCC
Q psy2110 329 DRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-------TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDG 401 (622)
Q Consensus 329 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 401 (622)
+|++++|++|+.||+|++||+++++.+..+..+. ..|++++|+|+|++|++++.|+.|++||+..
T Consensus 258 ~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~-------- 329 (380)
T 3iz6_a 258 FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL-------- 329 (380)
T ss_dssp CTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT--------
T ss_pred ecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC--------
Confidence 9999999999999999999999999988876543 2489999999999999999999999999872
Q ss_pred CCCcceeeec--cccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe
Q psy2110 402 DPEPIQKLQD--LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN 449 (622)
Q Consensus 402 ~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~ 449 (622)
...+..+.. ..+...+.+++|+|+|++|++|+. |+.|+||++...+
T Consensus 330 -~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 330 -AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW-DKNLKIWAFSGHR 377 (380)
T ss_dssp -CCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT-TSCEEEEECCSSS
T ss_pred -CceEEEEecccCCCCCceEEEEECCCCCEEEEeeC-CCCEEEEecCCCc
Confidence 233333322 123356788999999999999997 9999999987653
No 37
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.6e-41 Score=344.04 Aligned_cols=321 Identities=12% Similarity=0.119 Sum_probs=268.9
Q ss_pred cceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhcccc
Q psy2110 3 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT 82 (622)
Q Consensus 3 ~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (622)
.+++++|+|+|++|++|+.||.|++||..+.+.. ..+..+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---------------------------------------~~~~~~~ 98 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---------------------------------------KMLKRAD 98 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---------------------------------------TTSCSCC
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccccee---------------------------------------eEEecCC
Confidence 4568999999999999999999999996443221 1111222
Q ss_pred ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC
Q psy2110 83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND 162 (622)
Q Consensus 83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 162 (622)
......|+|++++|++++.+ +.|++||+.+++....+.+|...| ++++|+|++++|++++.|
T Consensus 99 ~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~l~s~s~d 160 (420)
T 3vl1_A 99 YTAVDTAKLQMRRFILGTTE-GDIKVLDSNFNLQREIDQAHVSEI-----------------TKLKFFPSGEALISSSQD 160 (420)
T ss_dssp EEEEEEECSSSCEEEEEETT-SCEEEECTTSCEEEEETTSSSSCE-----------------EEEEECTTSSEEEEEETT
T ss_pred ceEEEEEecCCCEEEEEECC-CCEEEEeCCCcceeeecccccCcc-----------------EEEEECCCCCEEEEEeCC
Confidence 23345899999999999975 999999999999999889999988 599999999999999999
Q ss_pred CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEecc---CCcC-
Q psy2110 163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA---HMHP- 238 (622)
Q Consensus 163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~- 238 (622)
+.|++||+.+++....+..|. ..|.+++|+|++++|++++.|+.|++||+.+++.+..+.. |...
T Consensus 161 ~~i~iwd~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 161 MQLKIWSVKDGSNPRTLIGHR-----------ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp SEEEEEETTTCCCCEEEECCS-----------SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred CeEEEEeCCCCcCceEEcCCC-----------CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 999999999998888777665 3589999999999999999999999999999998888875 3334
Q ss_pred --------------------eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEe
Q psy2110 239 --------------------VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVC 296 (622)
Q Consensus 239 --------------------v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~ 296 (622)
+.+++|+|++++|++++.||.|++||+++++....+. +...+.+++|+|++..+++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence 4445557899999999999999999999998887775 668899999999998789999
Q ss_pred eCCCcEEEEEecCCce-eecccC-CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc---------cEEEEEecCCCCE
Q psy2110 297 PMRHAAVLVDTDGDHQ-IVPIDE-DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL---------ELKASFKASTTAI 365 (622)
Q Consensus 297 ~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~i 365 (622)
+.++.+++||+++... +..+.. +...+.++ +.+++++|++++.||.|++|++... .....+..|...|
T Consensus 310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v 388 (420)
T 3vl1_A 310 YENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAV 388 (420)
T ss_dssp ETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCC
T ss_pred eCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcce
Confidence 9999999999988643 555555 56666666 5568889999999999999998763 2233456788999
Q ss_pred EEEEEcCCCC---EEEEEeCCCcEEEEecc
Q psy2110 366 KSIEFARRGN---CLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 366 ~~~~~s~~~~---~l~~~~~d~~i~i~d~~ 392 (622)
.+++|+|+++ .+++++.+|.+.+|++.
T Consensus 389 ~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 389 SQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred EEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 9999999999 78888889999999987
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-42 Score=352.72 Aligned_cols=338 Identities=13% Similarity=0.237 Sum_probs=272.3
Q ss_pred cceEEEEccCCc-EEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccc
Q psy2110 3 LSIVASFDRRGQ-HVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK 81 (622)
Q Consensus 3 ~V~~~~fspdg~-~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (622)
.|.+++|||+|+ +||+|+.+|. .+++.+.|+.|++|++..... .+.+..+.+.
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~-----------------~~~~~~~d~~v~iw~~~~~~~---------~~~~~~~~~~ 67 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGT-----------------VDANFSTDSSLELWSLLAADS---------EKPIASLQVD 67 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSC-----------------CCSSCCCCCCCEEEESSSGGG---------CSCSCCCCCS
T ss_pred hcceEeeCCCCCCEEEEEecCcc-----------------cccccCCCCeEEEEEccCCCC---------CcEEEEEecC
Confidence 588999999997 9999943332 122334444555554432110 0122233455
Q ss_pred cceeEEEEcCCCCEEEEecCCCCeEEEEEcCC----CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC-CCEE
Q psy2110 82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSV----GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR-GTLL 156 (622)
Q Consensus 82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l 156 (622)
..+.+++|+|++++|++++.+ +.|++|++.+ .+.+..+.+|...+ ++++|+|+ +++|
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~~l 129 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDN-GSLELYSTNEANNAINSMARFSNHSSSV-----------------KTVKFNAKQDNVL 129 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESS-SCEEEECCSSTTSCCCEEEECCCSSSCC-----------------CEEEECSSSTTBE
T ss_pred CceEEEEECCCCCeEEEEccC-CeEEEeecccccccccchhhccCCccce-----------------EEEEEcCCCCCEE
Confidence 678899999999999999975 9999999987 45888899999988 59999998 8999
Q ss_pred EEeeCCCcEEEEecCCcc------cccccccccCCCcccccccccceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCceE
Q psy2110 157 AVGCNDGRIVLWDFLTRG------IAKIISAHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDFLTRGIA 229 (622)
Q Consensus 157 ~s~~~dg~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iwd~~~~~~~ 229 (622)
++++.||.|++||+.+++ ....+... ......|.+++|+|+ +.+|++++.|+.|++||+.+++.+
T Consensus 130 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 201 (416)
T 2pm9_A 130 ASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS--------MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201 (416)
T ss_dssp EEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS--------CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred EEEcCCCeEEEEECCCCccccccccccccccc--------cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence 999999999999998876 22222100 011145889999999 789999999999999999999998
Q ss_pred EEeccC------CcCeeEEEEcCCC-CEEEEEeCCC---cEEEEECCCC-cEEEEEe--CCCCeEEEEEeCCCCeEEEEe
Q psy2110 230 KIISAH------MHPVCSISWSRNG-YKIISASTDN---NVCIWDVLTG-ECEQKYR--FPSPILKVQFHPRNDHMFLVC 296 (622)
Q Consensus 230 ~~~~~~------~~~v~~~~~s~~~-~~l~s~~~d~---~i~iwd~~~~-~~~~~~~--~~~~v~~~~~~~~~~~~~~~~ 296 (622)
..+..| ...|.+++|+|++ .+|++++.|+ .|++||++++ +....+. |...|.+++|+|++..+++++
T Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~ 281 (416)
T 2pm9_A 202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS 281 (416)
T ss_dssp EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEE
T ss_pred eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEE
Confidence 888876 7899999999997 6899999998 9999999986 5566665 778999999999545578899
Q ss_pred eCCCcEEEEEecCCceeecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCccEEEEEe----------------
Q psy2110 297 PMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALELKASFK---------------- 359 (622)
Q Consensus 297 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------- 359 (622)
+.++.+++||+++...+..+..|...+.+++|+|++ .++++++.||.|++|++.+........
T Consensus 282 ~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (416)
T 2pm9_A 282 GRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNN 361 (416)
T ss_dssp ESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----------------
T ss_pred eCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccc
Confidence 999999999999999999999999999999999999 899999999999999998765322111
Q ss_pred -------------------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 360 -------------------ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 360 -------------------~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
.|...+.+++|+|+|++|++++.|+.|+||++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 362 VSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp -----CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred ccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 156778899999999999999999999999987
No 39
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.1e-40 Score=320.72 Aligned_cols=283 Identities=22% Similarity=0.396 Sum_probs=255.1
Q ss_pred cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG 159 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 159 (622)
+...+.+++|+|++++|++++.+ +.|++|++.+++....+.+|...+ .+++|+|++++|+++
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~l~s~ 83 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEKTISGHKLGI-----------------SDVAWSSDSNLLVSA 83 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCE-----------------EEEEECTTSSEEEEE
T ss_pred cCCcEEEEEECCCCCEEEEeeCC-CeEEEEeCCCcccchhhccCCCce-----------------EEEEEcCCCCEEEEE
Confidence 34567899999999999999975 999999999999999999999988 599999999999999
Q ss_pred eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe
Q psy2110 160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV 239 (622)
Q Consensus 160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 239 (622)
+.|+.|++||+.+++.+..+..|. ..|.+++|+|++++|++++.|+.|++||+.+++.+..+..|..+|
T Consensus 84 ~~d~~i~vwd~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 152 (312)
T 4ery_A 84 SDDKTLKIWDVSSGKCLKTLKGHS-----------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152 (312)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCS-----------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CCCCEEEEEECCCCcEEEEEcCCC-----------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcE
Confidence 999999999999998888777665 358999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc
Q psy2110 240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID 317 (622)
Q Consensus 240 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 317 (622)
.+++|+|++++|++++.|+.|++||+++++.+..+. +...+..++|+|+++ ++++++.++.+++||+++...+..+.
T Consensus 153 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEE
Confidence 999999999999999999999999999999887764 556899999999987 57788899999999999988888777
Q ss_pred CCCCceE---EEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecc
Q psy2110 318 EDSDLSI---VASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT--GDRLIRVYNHQ 392 (622)
Q Consensus 318 ~~~~~~~---~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~i~d~~ 392 (622)
.|..... .....+++.++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 7665432 223346789999999999999999999999999999999999999999999999987 69999999865
No 40
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.2e-40 Score=323.55 Aligned_cols=305 Identities=17% Similarity=0.250 Sum_probs=244.7
Q ss_pred ceEEEEeccCc-ceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccc---cccccCCCcccc
Q psy2110 115 NLVKILHGTKG-ELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI---ISAHMHPEFDGA 190 (622)
Q Consensus 115 ~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~---~~~~~~~~~~~~ 190 (622)
+++..+.+|.. .+ ++++|+|+|++||+|+.|++|+||++.++..... ...|.
T Consensus 6 ~~~~~~~~h~~~~v-----------------~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~------- 61 (345)
T 3fm0_A 6 VLLGRVPAHPDSRC-----------------WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ------- 61 (345)
T ss_dssp EEEEEECCSTTSCE-----------------EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCS-------
T ss_pred EEeeeecCCCCCcE-----------------EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccC-------
Confidence 46677888887 66 5999999999999999999999999987653321 12232
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC--ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy2110 191 LDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR--GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG 268 (622)
Q Consensus 191 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~ 268 (622)
..|.+++|+|+|++|++|+.|+.+++|++.++ +++..+.+|...|.+++|+|++++|++++.|++|++||+.++
T Consensus 62 ----~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~ 137 (345)
T 3fm0_A 62 ----RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE 137 (345)
T ss_dssp ----SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred ----CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence 35899999999999999999999999999876 456788999999999999999999999999999999999876
Q ss_pred cE---EEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc--eeecccCCCCceEEEEEeeCCCEEEEEecCC
Q psy2110 269 EC---EQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH--QIVPIDEDSDLSIVASFDRRGQHVVTGNSKG 342 (622)
Q Consensus 269 ~~---~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 342 (622)
.. +..+. |...|.+++|+|++. ++++++.|+.+++|+.+... ....+..|...|.+++|+|+|++|++++.|+
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 138 DEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp SCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence 43 34444 778999999999987 68889999999999998764 4567888999999999999999999999999
Q ss_pred eEEEEeCCC---------------ccEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcc
Q psy2110 343 KVLVLSCPA---------------LELKASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI 406 (622)
Q Consensus 343 ~i~i~d~~~---------------~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 406 (622)
+|++|+... .+++..+.+ |...|.+++|+|++..|++++.|+.|++|+...... ...+.
T Consensus 217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~-----~~~~~ 291 (345)
T 3fm0_A 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSD-----PQQPT 291 (345)
T ss_dssp CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSC-----TTSCC
T ss_pred eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCC-----cceee
Confidence 999999632 134445554 888999999999999999999999999999873211 11111
Q ss_pred eeeec---cccceeeeeEEEcCCCC-eEEEeeCCCCeEEEEECCCCeeEEEE
Q psy2110 407 QKLQD---LVNKTMWKKCCFSGDGE-YVCAGSARQHALYIWEKSVGNLVKIL 454 (622)
Q Consensus 407 ~~~~~---~~~~~~~~~~~~spdg~-~l~~~~~~d~~i~iwd~~~~~~~~~~ 454 (622)
..+.. ..+...+.+++|+|++. +||+++. ||.|++|++.+++....+
T Consensus 292 ~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~-Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 292 FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD-DGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEEEETTSSSSCEEEEEECSSSTTEEEEEET-TSCEEEEEECC-------
T ss_pred EEEEeeecccccCcEeEeEEeCCCceEEEEcCC-CCcEEEEEecCCCCcccc
Confidence 11111 12345688999999984 8889987 999999999887765443
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.9e-40 Score=322.92 Aligned_cols=325 Identities=14% Similarity=0.187 Sum_probs=271.6
Q ss_pred cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG 159 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 159 (622)
+...+.+++|+|||++++++..+ +.+.+|............+|...+ ++++|+|++++|+++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~l~~~ 69 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPP-DALIGPGIPRHARQINTLNHGEVV-----------------CAVTISNPTRHVYTG 69 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCT-TSSSSTTCCSEEEEEEEECCSSCC-----------------CEEEECSSSSEEEEE
T ss_pred cCCceeEEEECCCCCEEEeecCC-CcEeccccCCccccceeccCCCce-----------------EEEEEecCCcEEEEc
Confidence 44556789999999999988865 556666555554555556788887 599999999999999
Q ss_pred eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCc
Q psy2110 160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMH 237 (622)
Q Consensus 160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~ 237 (622)
+ ||.|++|++.++.....+...... .....|.+++|+|++++|++++.++.|++|++.+++ ....+..|..
T Consensus 70 ~-dg~i~iw~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 142 (337)
T 1gxr_A 70 G-KGCVKVWDISHPGNKSPVSQLDCL------NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142 (337)
T ss_dssp C-BSEEEEEETTSTTCCSCSEEEECS------CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS
T ss_pred C-CCeEEEEECCCCCceeeeeccccc------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC
Confidence 9 999999999887544433221100 011468999999999999999999999999999877 5677888999
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110 238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316 (622)
Q Consensus 238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 316 (622)
.|.+++|+|++++|++++.|+.|++||+++++....+. +...+.+++|+|++. ++++++.++.+++||+++...+..+
T Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~ 221 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQH 221 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeee
Confidence 99999999999999999999999999999999888887 788999999999886 6778889999999999988776665
Q ss_pred cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccc
Q psy2110 317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLN 396 (622)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 396 (622)
. +...+.+++|+|+++++++++.++.|++||+.+++.. .+..|...|.+++|+|++++|++++.|+.|++|++..
T Consensus 222 ~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~--- 296 (337)
T 1gxr_A 222 D-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--- 296 (337)
T ss_dssp E-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---
T ss_pred c-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC---
Confidence 4 5677899999999999999999999999999988754 6778999999999999999999999999999999983
Q ss_pred cCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110 397 AGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEK 445 (622)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~ 445 (622)
...+... .....+.+++|+|++++|++++. |+.|++|++
T Consensus 297 ------~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~ 335 (337)
T 1gxr_A 297 ------GASIFQS---KESSSVLSCDISVDDKYIVTGSG-DKKATVYEV 335 (337)
T ss_dssp ------CCEEEEE---ECSSCEEEEEECTTSCEEEEEET-TSCEEEEEE
T ss_pred ------CeEEEEe---cCCCcEEEEEECCCCCEEEEecC-CCeEEEEEE
Confidence 2222222 23456788999999999999997 999999996
No 42
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.9e-40 Score=328.63 Aligned_cols=297 Identities=22% Similarity=0.386 Sum_probs=233.0
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccc-------ccccccceEEEEECCCCCEEEEEeCCCe
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDG-------ALDCISLAVTCAFNKRGTLLAVGCNDGR 217 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 217 (622)
.+++|+|||++||+|+ ++.+++|++.+++.+..+..+....... .......|.+++|+|+|++|++|+.|+.
T Consensus 68 ~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~ 146 (393)
T 1erj_A 68 CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 146 (393)
T ss_dssp CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe
Confidence 5999999999999987 6899999999988777665443211000 0011124899999999999999999999
Q ss_pred EEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEee
Q psy2110 218 IVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCP 297 (622)
Q Consensus 218 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 297 (622)
|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+.+...+.+++|+|.
T Consensus 147 i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~--------- 217 (393)
T 1erj_A 147 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG--------- 217 (393)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST---------
T ss_pred EEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC---------
Confidence 99999999999999999999999999999999999999999999999999887776665554544444442
Q ss_pred CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEE-------ecCCCCEEEEEE
Q psy2110 298 MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF-------KASTTAIKSIEF 370 (622)
Q Consensus 298 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~ 370 (622)
+++++++|+.||.|++||+++++.+..+ .+|...|.+++|
T Consensus 218 ---------------------------------~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 218 ---------------------------------DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp ---------------------------------TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred ---------------------------------CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence 5566777777777777777777766655 578899999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecccccccCCCC---CCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC
Q psy2110 371 ARRGNCLLVNTGDRLIRVYNHQEVLNAGKDG---DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV 447 (622)
Q Consensus 371 s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~ 447 (622)
+|++++|++++.|+.|++||+.......... .......+.. +...+.+++|+|++++|++++. |+.|++||+.+
T Consensus 265 ~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~-D~~v~iwd~~~ 341 (393)
T 1erj_A 265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKS 341 (393)
T ss_dssp CTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC--CSSCEEEEEECGGGCEEEEEET-TSEEEEEETTT
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCC
Confidence 9999999999999999999997432111000 0112222322 2345678999999999999997 99999999999
Q ss_pred CeeEEEEecCCCCceeEEEECC------CCCEEEEEe-CCcEEEeecC
Q psy2110 448 GNLVKILHGTKGELLLDVVWHP------VRPIIASIS-SGVVSLWAQN 488 (622)
Q Consensus 448 ~~~~~~~~~~~~~~v~~v~~sp------~~~~l~s~~-dg~v~iw~~~ 488 (622)
++++..+.+|.+. |.+++|+| ++++|++++ ||+|+||++.
T Consensus 342 ~~~~~~l~~h~~~-v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 342 GNPLLMLQGHRNS-VISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp CCEEEEEECCSSC-EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CeEEEEECCCCCC-EEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 9999999999987 99999886 678999999 9999999984
No 43
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-39 Score=327.52 Aligned_cols=301 Identities=20% Similarity=0.280 Sum_probs=251.0
Q ss_pred hccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEE-EEeecCccccccceeEEEEcCCCCEE
Q psy2110 78 LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLD-VVEFDGALDCISLAVTCAFNKRGTLL 156 (622)
Q Consensus 78 ~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l 156 (622)
+.+...+.+++|||||++||+++ + +.+++|++.+++.+..+..|....... .............|++++|+|++++|
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~-~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-N-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-B-SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-C-CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 34666788999999999999987 3 799999999999998887765321000 00000000111236899999999999
Q ss_pred EEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110 157 AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM 236 (622)
Q Consensus 157 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 236 (622)
++|+.|+.|++||+.+++....+..|. ..|.+++|+|++++|++++.|+.|++||+.++++...+. +.
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~-----------~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHE-----------QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCS-----------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCC-----------CCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999988887777765 358999999999999999999999999999998887776 55
Q ss_pred cCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEE--------eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEe
Q psy2110 237 HPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKY--------RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDT 307 (622)
Q Consensus 237 ~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~ 307 (622)
..+.+++|+| ++++|++++.|+.|++||+++++.+..+ .|...|.+++|+|++. ++++++.|+.+++||+
T Consensus 207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNL 285 (393)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEEC
Confidence 7899999999 8999999999999999999999887766 2667899999999987 5788999999999999
Q ss_pred cCC------------ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcC---
Q psy2110 308 DGD------------HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFAR--- 372 (622)
Q Consensus 308 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~--- 372 (622)
+.. .....+..|...+.++++++++++|++|+.|+.|++||+.+++++..+.+|...|.+++|++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~ 365 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS 365 (393)
T ss_dssp ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCT
T ss_pred CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcC
Confidence 753 23456678889999999999999999999999999999999999999999999999999986
Q ss_pred ---CCCEEEEEeCCCcEEEEeccc
Q psy2110 373 ---RGNCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 373 ---~~~~l~~~~~d~~i~i~d~~~ 393 (622)
++++|++++.|+.|++|++..
T Consensus 366 ~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 366 LGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TCTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999873
No 44
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=320.82 Aligned_cols=281 Identities=14% Similarity=0.211 Sum_probs=236.0
Q ss_pred ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEE---EEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110 83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK---ILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG 159 (622)
Q Consensus 83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 159 (622)
.+.+++|+|+|++||+|+.| ++|+|||+.++.... ...+|...| ++++|+|++++|++|
T Consensus 18 ~v~~l~~sp~g~~las~~~D-~~i~iw~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~sp~g~~l~s~ 79 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGD-RRIRIWGTEGDSWICKSVLSEGHQRTV-----------------RKVAWSPCGNYLASA 79 (345)
T ss_dssp CEEEEEECTTSSCEEEEETT-SCEEEEEEETTEEEEEEEECSSCSSCE-----------------EEEEECTTSSEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCC-CeEEEEEcCCCcceeeeeeccccCCcE-----------------EEEEECCCCCEEEEE
Confidence 56789999999999999976 999999998876432 236788888 599999999999999
Q ss_pred eCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eEEEecc
Q psy2110 160 CNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---IAKIISA 234 (622)
Q Consensus 160 ~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~ 234 (622)
+.|++|++|++..+. ....+..|. ..|.+++|+|++++|++++.|+.|++||+.++. ++..+.+
T Consensus 80 s~D~~v~iw~~~~~~~~~~~~~~~h~-----------~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 80 SFDATTCIWKKNQDDFECVTTLEGHE-----------NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp ETTSCEEEEEECCC-EEEEEEECCCS-----------SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred ECCCcEEEEEccCCCeEEEEEccCCC-----------CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence 999999999988763 345555554 358999999999999999999999999998763 4567889
Q ss_pred CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE--EEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110 235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE--QKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH 311 (622)
Q Consensus 235 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 311 (622)
|...|.+++|+|++++|++++.|+.|++||+.+++.. ..+. |...|.+++|+|++. ++++++.|+.+++|+.....
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~ 227 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPG 227 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCC
Confidence 9999999999999999999999999999999887643 4444 788999999999987 68899999999999974321
Q ss_pred ---------------eeeccc-CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc---------EEEEEecCCCCEE
Q psy2110 312 ---------------QIVPID-EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE---------LKASFKASTTAIK 366 (622)
Q Consensus 312 ---------------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~i~ 366 (622)
.+..+. .|...+.+++|++++..+++++.|+.|++|+..... ......+|...|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 307 (345)
T 3fm0_A 228 NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307 (345)
T ss_dssp CTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEE
T ss_pred CCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEe
Confidence 122222 277889999999999999999999999999976542 1223357899999
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEeccc
Q psy2110 367 SIEFARRG-NCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 367 ~~~~s~~~-~~l~~~~~d~~i~i~d~~~ 393 (622)
+++|+|++ .+|++++.||.|++|++..
T Consensus 308 ~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 308 CVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred EeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 99999998 4999999999999999984
No 45
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.2e-39 Score=313.23 Aligned_cols=283 Identities=18% Similarity=0.268 Sum_probs=247.4
Q ss_pred hccc-cceeEEEEcCCC-CEEEEecCCCCeEEEEEcCC-----CceEEEEeccCcceeEEEEeecCccccccceeEEEEc
Q psy2110 78 LVNK-TMWKKCCFSGDG-EYVCAGSARQHALYIWEKSV-----GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFN 150 (622)
Q Consensus 78 ~~~~-~~~~~~~~sp~~-~~l~~~~~~~~~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s 150 (622)
+.+| ..+.+++|+|++ ++|++++.| ++|++|++.. +.++..+.+|...| .+++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D-~~v~~W~~~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~s 74 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRD-KTLISWKLTGDDQKFGVPVRSFKGHSHIV-----------------QDCTLT 74 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETT-SEEEEEEEEEETTEEEEEEEEEECCSSCE-----------------EEEEEC
T ss_pred EccccceEEEEEccCCCccEEEEecCC-ccEEEecCCCCCccccccceEEeCCcccE-----------------EEEEEC
Confidence 3444 457799999975 789999975 9999999864 34577889999988 599999
Q ss_pred CCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE
Q psy2110 151 KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK 230 (622)
Q Consensus 151 ~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~ 230 (622)
|++++|++|+.|++|++||+.+++....+..|. ..|.+++|+|++++|++|+.|+.|++||+. ++++.
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~ 142 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHK-----------SDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLA 142 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-----------SCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCC-----------CcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEE
Confidence 999999999999999999999998888887775 358999999999999999999999999986 56778
Q ss_pred EeccCCcCeeEEEEcCC------CCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110 231 IISAHMHPVCSISWSRN------GYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAV 303 (622)
Q Consensus 231 ~~~~~~~~v~~~~~s~~------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~ 303 (622)
.+.+|...|.+++|+|. +..|++++.|+.|++||+++++....+. |...|.+++|+|++. ++++++.|+.|+
T Consensus 143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~ 221 (319)
T 3frx_A 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIM 221 (319)
T ss_dssp EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEE
T ss_pred EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEE
Confidence 88899999999999984 4589999999999999999998887776 889999999999987 688899999999
Q ss_pred EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec--------CCCCEEEEEEcCCCC
Q psy2110 304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA--------STTAIKSIEFARRGN 375 (622)
Q Consensus 304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~s~~~~ 375 (622)
+||+.+...+..+..+ ..+.+++|+|++.++++++.++ +++|++.....+..+.. +...+.+++|+|+|+
T Consensus 222 iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 299 (319)
T 3frx_A 222 LWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299 (319)
T ss_dssp EEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred EEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence 9999998888777654 5789999999999999887654 99999998887776653 456799999999999
Q ss_pred EEEEEeCCCcEEEEeccc
Q psy2110 376 CLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 376 ~l~~~~~d~~i~i~d~~~ 393 (622)
+|++++.|+.|++||+.+
T Consensus 300 ~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 300 TLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEEETTSCEEEEEEEE
T ss_pred EEEEeecCceEEEEEEee
Confidence 999999999999999873
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-41 Score=346.89 Aligned_cols=343 Identities=9% Similarity=0.060 Sum_probs=246.2
Q ss_pred ccccceeEEEEcCCC---------CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEE
Q psy2110 79 VNKTMWKKCCFSGDG---------EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAF 149 (622)
Q Consensus 79 ~~~~~~~~~~~sp~~---------~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~ 149 (622)
.....+.+++|+|++ ++||+++.++ . . . ..
T Consensus 131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~-~--------~------------~--------------------~~ 169 (524)
T 2j04_B 131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQY-M--------D------------E--------------------PL 169 (524)
T ss_dssp ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------------
T ss_pred ECCCceeEEEecccCCCCccCcCCeEEEEEEecc-c--------C------------C--------------------cc
Confidence 345677899999987 7888888642 1 0 0 13
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCccccc----ccccccCCCcccccccccceEEEEECCC------CCEEEEEeCCCeEE
Q psy2110 150 NKRGTLLAVGCNDGRIVLWDFLTRGIAK----IISAHMHPEFDGALDCISLAVTCAFNKR------GTLLAVGCNDGRIV 219 (622)
Q Consensus 150 s~d~~~l~s~~~dg~i~vw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~~~~dg~i~ 219 (622)
+|+++.|++++.|++|+||++.+++... .+..+. ..|.+++|+|+ +.+||+++.||+|+
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~-----------~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvr 238 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF-----------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTIN 238 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECC-----------CSEEEEEECSSCCCSSSSCEEEEEETTSCEE
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC-----------CcEEEEEECCCCCCCCCCceEEEEecCCeEE
Confidence 6888999999999999999998765432 122222 35899999997 57999999999999
Q ss_pred EEEcCCCce-----------EEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEEe-CCCCeEEE--E
Q psy2110 220 LWDFLTRGI-----------AKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE-CEQKYR-FPSPILKV--Q 284 (622)
Q Consensus 220 iwd~~~~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~--~ 284 (622)
+||+.++.. ...+.+|...|++++|++++ .|++|+.||+|++||+++++ +...+. |...|.++ .
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~ 317 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTA 317 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEE
Confidence 999986532 24678899999999999864 89999999999999999764 334444 88999999 5
Q ss_pred EeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCC--CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC
Q psy2110 285 FHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDS--DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST 362 (622)
Q Consensus 285 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 362 (622)
|+|++..++++++.|+.+++||+++......+..|. ..+.+++|+|+++.+++++.|++|++||++++.++..+.+|.
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~ 397 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE 397 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS
T ss_pred cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC
Confidence 677765689999999999999998876655554443 247789999999999999999999999999999888899999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec---cccceeeeeEEEcCCCCeEEEeeCCCCe
Q psy2110 363 TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD---LVNKTMWKKCCFSGDGEYVCAGSARQHA 439 (622)
Q Consensus 363 ~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~d~~ 439 (622)
..|++++|+|+|++|++++.|++|++||+... .+..+.. ......+.+++|+|+|+.+.. . ++
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~----------~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~-~~-- 463 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAARR----------LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-D-SS-- 463 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCSS----------TTTCC------CCCCEEEECBCCSSSCEEEE-C-CC--
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechHh----------hccccccCccceeeeEEEEeccCCCCCeEEc-c-CC--
Confidence 99999999999999999999999999998631 1111110 111123457899999996532 2 12
Q ss_pred EEEEECC-CCeeEEEEecCCCCceeEEEECCCCC---EEEEEe-CCcEEEeecCC
Q psy2110 440 LYIWEKS-VGNLVKILHGTKGELLLDVVWHPVRP---IIASIS-SGVVSLWAQNQ 489 (622)
Q Consensus 440 i~iwd~~-~~~~~~~~~~~~~~~v~~v~~sp~~~---~l~s~~-dg~v~iw~~~~ 489 (622)
+++|+.. ++.++..+.+|... |.+|+|+|+++ +||+++ ||.|+||++..
T Consensus 464 ~~~~~~~~~g~~~~~l~gh~~~-V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 464 YEVYPLTVNDVSKAKIDAHGIN-ITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCC-------------CCCS-CCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ceecccccCCcceeeecCCCce-EEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 3344432 57778889999876 99999999965 999999 89999999853
No 47
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.2e-39 Score=317.62 Aligned_cols=290 Identities=17% Similarity=0.244 Sum_probs=231.8
Q ss_pred CCcceEEEE-----cc-CCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchh
Q psy2110 1 SDLSIVASF-----DR-RGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK 74 (622)
Q Consensus 1 t~~V~~~~f-----sp-dg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 74 (622)
++.|++++| +| |+++||||+.||+|+|||+...+..... ...
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~--------------------------------~~~ 68 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF--------------------------------GIP 68 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS--------------------------------EEE
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc--------------------------------ccc
Confidence 468999999 77 9999999999999999997542211000 000
Q ss_pred hhhhc-cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCC
Q psy2110 75 LQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG 153 (622)
Q Consensus 75 ~~~~~-~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~ 153 (622)
...+. +...+.+++|+|++.+|++++.| ++|++||+.+++.+..+.+|...| ++++|+|++
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D-~~v~lwd~~~~~~~~~~~~h~~~v-----------------~~v~~sp~~ 130 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWD-KTLRLWDLRTGTTYKRFVGHQSEV-----------------YSVAFSPDN 130 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETT-SEEEEEETTSSCEEEEEECCCSCE-----------------EEEEECSST
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCC-CcEEEEECCCCcEEEEEcCCCCcE-----------------EEEEECCCC
Confidence 11112 33457789999999999999975 999999999999999999999998 599999999
Q ss_pred CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCC----------CEEEEEeCCCeEEEEEc
Q psy2110 154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG----------TLLAVGCNDGRIVLWDF 223 (622)
Q Consensus 154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----------~~l~~~~~dg~i~iwd~ 223 (622)
++|++++.|++|++||+............. ....|.+++|+|++ .+|++++.|+.|++||
T Consensus 131 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd- 200 (343)
T 2xzm_R 131 RQILSAGAEREIKLWNILGECKFSSAEKEN---------HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN- 200 (343)
T ss_dssp TEEEEEETTSCEEEEESSSCEEEECCTTTS---------CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-
T ss_pred CEEEEEcCCCEEEEEeccCCceeeeecccC---------CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-
Confidence 999999999999999987432211111101 11358999999987 7999999999999999
Q ss_pred CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110 224 LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL-TGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAA 302 (622)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i 302 (622)
.+.+....+.+|...|.+++|+|+|++|++++.|+.|++||+. .......+.+...|.+++|+|++. ++ +++.++.+
T Consensus 201 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l-a~~~d~~v 278 (343)
T 2xzm_R 201 TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ-WV-AVGTDQGV 278 (343)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSC-EE-EEEESSCE
T ss_pred CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCC-EE-EEECCCCE
Confidence 4566777889999999999999999999999999999999994 445556666777899999999986 33 45567889
Q ss_pred EEEEecCCceee--ccc-----------CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc
Q psy2110 303 VLVDTDGDHQIV--PID-----------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL 352 (622)
Q Consensus 303 ~~~d~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 352 (622)
++|++.+..... .+. .|...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 279 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 279 KIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 999997654332 222 56778999999999999999999999999997654
No 48
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-39 Score=313.66 Aligned_cols=295 Identities=18% Similarity=0.307 Sum_probs=231.8
Q ss_pred CCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcc--ccccc-cc-ccCCCc
Q psy2110 112 SVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKII-SA-HMHPEF 187 (622)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~--~~~~~-~~-~~~~~~ 187 (622)
.+.+++..+.+|.+.| ++++|+|+ +||+|+.|++|++|++..+. ....+ .. |.
T Consensus 2 ~~~~~~~~~~~h~~~v-----------------~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~---- 58 (330)
T 2hes_X 2 ASINLIKSLKLYKEKI-----------------WSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK---- 58 (330)
T ss_dssp -CCEEEEEEECCSSCE-----------------EEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCC----
T ss_pred cccccceeeccCCCce-----------------eeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCcc----
Confidence 3456778899999998 59999988 99999999999999998753 22223 11 22
Q ss_pred ccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-------CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcE
Q psy2110 188 DGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-------RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNV 260 (622)
Q Consensus 188 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i 260 (622)
..|.+++|+|++++|++++.|+.|++|++.. .+....+.+|...|.+++|+|++++|++++.|++|
T Consensus 59 -------~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v 131 (330)
T 2hes_X 59 -------KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131 (330)
T ss_dssp -------SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCE
T ss_pred -------CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence 3589999999999999999999999999853 34667889999999999999999999999999999
Q ss_pred EEEECCCC----cEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC--ceeecccCCCCceEEEEEeeC--
Q psy2110 261 CIWDVLTG----ECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD--HQIVPIDEDSDLSIVASFDRR-- 331 (622)
Q Consensus 261 ~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~-- 331 (622)
++||+... +++..+. |...|.+++|+|++. ++++++.|+.+++||.... ..+..+..|...|.+++|+|+
T Consensus 132 ~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 132 WIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG 210 (330)
T ss_dssp EEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred EEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence 99999432 4555555 788999999999886 6889999999999999876 567788899999999999998
Q ss_pred CCEEEEEecCCeEEEEeCCCc--------cEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCC
Q psy2110 332 GQHVVTGNSKGKVLVLSCPAL--------ELKASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGD 402 (622)
Q Consensus 332 ~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 402 (622)
+.+|++++.|++|++||+..+ .+...+.. |...|.+++|++++ +|++++.|+.|++|+.... .
T Consensus 211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~-------~ 282 (330)
T 2hes_X 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG-------E 282 (330)
T ss_dssp SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT-------E
T ss_pred eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC-------c
Confidence 779999999999999998754 34455554 88999999999765 7999999999999998621 1
Q ss_pred CCcceeeeccccce-eeeeEEEcC--CCCeEEEeeCCCCeEEEEECCC
Q psy2110 403 PEPIQKLQDLVNKT-MWKKCCFSG--DGEYVCAGSARQHALYIWEKSV 447 (622)
Q Consensus 403 ~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~~~d~~i~iwd~~~ 447 (622)
........ ..+.. .+.+++|+| ++++|++++. |+.|+||++..
T Consensus 283 ~~~~~~~~-~~h~~~~v~~v~~~~~~~~~~las~s~-Dg~v~~W~~~~ 328 (330)
T 2hes_X 283 WKVFAKRA-LCHGVYEINVVKWLELNGKTILATGGD-DGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEES-CTTTTSCEEEEEEC-----CCEEEEET-TSEEEEEEC--
T ss_pred eEEEeccc-cccccceEEEEEEecCCCceEEEEecC-CCcEEEEEecc
Confidence 01111111 11222 577899999 7899999997 99999999864
No 49
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.2e-38 Score=308.96 Aligned_cols=294 Identities=17% Similarity=0.306 Sum_probs=240.1
Q ss_pred CCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC-CCEEEEeeCCCcEEEEecCCcccc-----cccccccCC
Q psy2110 112 SVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDFLTRGIA-----KIISAHMHP 185 (622)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~vw~~~~~~~~-----~~~~~~~~~ 185 (622)
++.++..+|+||.+.| ++++|+|+ +++||||+.|++|+|||+.+++.. ..+..|.
T Consensus 26 ~~~~l~~tL~GH~~~V-----------------~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~-- 86 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWV-----------------TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS-- 86 (340)
T ss_dssp CEEEEEEEECCCSSCE-----------------EEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS--
T ss_pred CceEEEEEECCccCCE-----------------EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC--
Confidence 3445667899999999 59999998 679999999999999999875432 2333333
Q ss_pred CcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy2110 186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265 (622)
Q Consensus 186 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~ 265 (622)
..|.+++|+|+|++|++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+
T Consensus 87 ---------~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~ 157 (340)
T 4aow_A 87 ---------HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157 (340)
T ss_dssp ---------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred ---------CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence 35899999999999999999999999999999988888889999999999999999999999999999998
Q ss_pred CCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC--CCEEEEEecCCe
Q psy2110 266 LTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR--GQHVVTGNSKGK 343 (622)
Q Consensus 266 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~ 343 (622)
.......... ..|...+..++|+++ ..++++++.|+.
T Consensus 158 ~~~~~~~~~~-----------------------------------------~~~~~~v~~~~~~~~~~~~~~~s~~~d~~ 196 (340)
T 4aow_A 158 LGVCKYTVQD-----------------------------------------ESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196 (340)
T ss_dssp TSCEEEEECS-----------------------------------------SSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred CCCceEEEEe-----------------------------------------ccccCcccceEEccCCCCcEEEEEcCCCE
Confidence 7654332211 112233334444443 356788899999
Q ss_pred EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEE
Q psy2110 344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCF 423 (622)
Q Consensus 344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (622)
|++||+++++++..+.+|...|++++|+|++++|++++.|+.|++||+.. ...+..+. ....+.+++|
T Consensus 197 i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~---------~~~~~~~~---~~~~v~~~~~ 264 (340)
T 4aow_A 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE---------GKHLYTLD---GGDIINALCF 264 (340)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT---------TEEEEEEE---CSSCEEEEEE
T ss_pred EEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc---------Cceeeeec---CCceEEeeec
Confidence 99999999999999999999999999999999999999999999999983 33444443 3456778899
Q ss_pred cCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe---------cCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110 424 SGDGEYVCAGSARQHALYIWEKSVGNLVKILH---------GTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ 489 (622)
Q Consensus 424 spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~ 489 (622)
+|++.+++++. |+.|++||+.++..+..+. +|... |++++|+|++++|++++ ||.|+||++.+
T Consensus 265 ~~~~~~~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 265 SPNRYWLCAAT--GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ-CTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp CSSSSEEEEEE--TTEEEEEETTTTEEEEEECCC-------CCCCC-EEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CCCCceeeccC--CCEEEEEECCCCeEEEeccccceeeeccCCCCC-EEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 99987665554 8899999999888776654 45555 99999999999999999 99999999864
No 50
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.2e-38 Score=320.86 Aligned_cols=324 Identities=16% Similarity=0.297 Sum_probs=280.3
Q ss_pred CCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccc
Q psy2110 113 VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALD 192 (622)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 192 (622)
..+....+.+|.+.+. .+ +++++++|++|+.||+|++||+.+++....+..|.
T Consensus 107 ~~~~~~~l~~h~~~v~----------------~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--------- 159 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVI----------------TC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--------- 159 (445)
T ss_dssp CCCCCEEEECSTTSCE----------------EE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS---------
T ss_pred CcceeEEecccCCCcE----------------EE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCC---------
Confidence 3345677889988763 34 45568999999999999999999998888887665
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q psy2110 193 CISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQ 272 (622)
Q Consensus 193 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 272 (622)
..|.+++|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +..|++++.||.|++||+.+++.+.
T Consensus 160 --~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~ 233 (445)
T 2ovr_B 160 --GGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH 233 (445)
T ss_dssp --SCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE
T ss_pred --CCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE
Confidence 348899997 5799999999999999999999999999999999999995 6789999999999999999999988
Q ss_pred EEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110 273 KYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA 351 (622)
Q Consensus 273 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 351 (622)
.+. +...+.++++ ++. ++++++.++.+++||+++...+..+..|...+.++.+ ++.++++++.||.|++||+++
T Consensus 234 ~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~ 308 (445)
T 2ovr_B 234 VLMGHVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET 308 (445)
T ss_dssp EEECCSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT
T ss_pred EEcCCcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC
Confidence 887 7889999999 343 6888999999999999999999999999999999988 789999999999999999999
Q ss_pred ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc-cceeeeeEEEcCCCCeE
Q psy2110 352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYV 430 (622)
Q Consensus 352 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l 430 (622)
++++..+..|...+.++.++ +++|++++.|+.|++||+. ....+..+.... +...+.+++|+ +++|
T Consensus 309 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~---------~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 309 GNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIK---------TGQCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp CCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETT---------TCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred CCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECC---------CCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 99999999999999988874 6699999999999999997 334555555433 33556777885 6899
Q ss_pred EEeeCCCCeEEEEECCCCeeEEEEe-----cCCCCceeEEEECCCCCEEEEEe-CCc----EEEeecCC
Q psy2110 431 CAGSARQHALYIWEKSVGNLVKILH-----GTKGELLLDVVWHPVRPIIASIS-SGV----VSLWAQNQ 489 (622)
Q Consensus 431 ~~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~v~~sp~~~~l~s~~-dg~----v~iw~~~~ 489 (622)
++++. ||.|++||+.+++.+..+. +|.+. |.+++|+|++.+|++++ ||+ |.+||++.
T Consensus 376 ~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 376 ITSSD-DGTVKLWDLKTGEFIRNLVTLESGGSGGV-VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEET-TSEEEEEETTTCCEEEEEEECTTGGGTCE-EEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEeC-CCeEEEEECCCCceeeeeeccccCCCCce-EEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99997 9999999999999998883 45544 99999999999999999 997 99999853
No 51
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-38 Score=310.14 Aligned_cols=280 Identities=16% Similarity=0.238 Sum_probs=225.8
Q ss_pred ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC--ceEEEE-ec-cCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110 81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG--NLVKIL-HG-TKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL 156 (622)
Q Consensus 81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 156 (622)
...+.+++|+|+ +|++++.| +.|++|++.++ +....+ .+ |...| ++++|+|++++|
T Consensus 14 ~~~v~~~~~s~~--~las~~~D-~~i~lw~~~~~~~~~~~~~~~~~h~~~v-----------------~~v~~sp~~~~l 73 (330)
T 2hes_X 14 KEKIWSFDFSQG--ILATGSTD-RKIKLVSVKYDDFTLIDVLDETAHKKAI-----------------RSVAWRPHTSLL 73 (330)
T ss_dssp SSCEEEEEEETT--EEEEEESS-SCEEEEECSSSCCEEEEEECTTCCCSCE-----------------EEEEECTTSSEE
T ss_pred CCceeeeccCCC--EEEEEcCC-CEEEEEEecCCCeEEEEEEecCCccCCE-----------------EEEEECCCCCEE
Confidence 345778999988 89999875 99999999875 445555 34 88877 599999999999
Q ss_pred EEeeCCCcEEEEecCCc-------ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC----
Q psy2110 157 AVGCNDGRIVLWDFLTR-------GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT---- 225 (622)
Q Consensus 157 ~s~~~dg~i~vw~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~---- 225 (622)
++|+.|++|++|++... +....+..|. ..|.+++|+|+|++|++|+.|+.|++||+..
T Consensus 74 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~-----------~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 74 AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE-----------NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EEEETTSCEEEEEC-------CCCEEEEEEC---------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred EEEeCCCcEEEEEcccCcCccccceeEEEEcCCC-----------CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence 99999999999998542 2233344443 3589999999999999999999999999943
Q ss_pred CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEEe-CCCCeEEEEEeCCC-CeEEEEeeCCCc
Q psy2110 226 RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG--ECEQKYR-FPSPILKVQFHPRN-DHMFLVCPMRHA 301 (622)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~ 301 (622)
.+++..+.+|...|.+++|+|++.+|++++.|++|++||..++ +++..+. |...|.+++|+|++ ..++++++.|+.
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~ 222 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence 2466788999999999999999999999999999999998876 5666665 88899999999984 346889999999
Q ss_pred EEEEEecCC--------ceeecccC-CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc--EEEE-EecCCC-CEEEE
Q psy2110 302 AVLVDTDGD--------HQIVPIDE-DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE--LKAS-FKASTT-AIKSI 368 (622)
Q Consensus 302 i~~~d~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~~~~~~-~i~~~ 368 (622)
+++|++... .....+.. |...+.+++|++++ +|++++.||.|++|+..+++ .... +..|.. .|.++
T Consensus 223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v 301 (330)
T 2hes_X 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV 301 (330)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE
T ss_pred EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE
Confidence 999999754 23334444 88899999999655 88999999999999988774 3333 356776 89999
Q ss_pred EEcC--CCCEEEEEeCCCcEEEEecc
Q psy2110 369 EFAR--RGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 369 ~~s~--~~~~l~~~~~d~~i~i~d~~ 392 (622)
+|+| ++++|++++.|+.|++|++.
T Consensus 302 ~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 302 KWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEC-----CCEEEEETTSEEEEEEC-
T ss_pred EEecCCCceEEEEecCCCcEEEEEec
Confidence 9999 68999999999999999987
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-37 Score=308.93 Aligned_cols=280 Identities=19% Similarity=0.305 Sum_probs=250.8
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110 195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274 (622)
Q Consensus 195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 274 (622)
..|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW 112 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEEEEeCCCCeEEEEeeCC-----CcEEEEEecCCc-----------eeecccCCCC--ceEEEEEeeCCCEEE
Q psy2110 275 RFPSPILKVQFHPRNDHMFLVCPMR-----HAAVLVDTDGDH-----------QIVPIDEDSD--LSIVASFDRRGQHVV 336 (622)
Q Consensus 275 ~~~~~v~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~~l~ 336 (622)
.+...+.+++|+|++.. ++++..+ +.+.+||+.... ....+..+.. .+.+++|+|++++++
T Consensus 113 ~~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 191 (369)
T 3zwl_B 113 KSPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYII 191 (369)
T ss_dssp ECSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEE
T ss_pred ecCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEE
Confidence 99999999999999884 5666666 999999997653 2233334444 899999999999999
Q ss_pred EEecCCeEEEEeCCC-ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccc
Q psy2110 337 TGNSKGKVLVLSCPA-LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK 415 (622)
Q Consensus 337 ~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (622)
+++.+|.|++||+++ .+.+..+..|...|.+++|+|++++|++++.|+.|++||+.. ...+..+. ..
T Consensus 192 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~---~~ 259 (369)
T 3zwl_B 192 AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST---------LQVLKKYE---TD 259 (369)
T ss_dssp EEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---------CCEEEEEE---CS
T ss_pred EEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC---------Cceeeeec---CC
Confidence 999999999999998 788999999999999999999999999999999999999983 34444443 44
Q ss_pred eeeeeEEEcCCCCeEEEeeCCCC--------------eEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CC
Q psy2110 416 TMWKKCCFSGDGEYVCAGSARQH--------------ALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SG 480 (622)
Q Consensus 416 ~~~~~~~~spdg~~l~~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg 480 (622)
..+..++|+|+++++++++. ++ .+++||..+++.+..+.+|... |++++|+|++++|++++ ||
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 260 CPLNTAVITPLKEFIILGGG-QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGP-LNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp SCEEEEEECSSSSEEEEEEC-CC-------------CEEEEEETTTCCEEEEEECCSSC-EEEEEECTTSSEEEEEETTS
T ss_pred CCceeEEecCCCceEEEeec-CCCceEEEEecCCCcceeEEEecCCCcchhheecccCc-EEEEEECCCCCEEEEEcCCC
Confidence 56678999999999999997 55 8999999999999999999887 99999999999999999 99
Q ss_pred cEEEeecCC
Q psy2110 481 VVSLWAQNQ 489 (622)
Q Consensus 481 ~v~iw~~~~ 489 (622)
.|++|++..
T Consensus 338 ~v~iw~~~~ 346 (369)
T 3zwl_B 338 FIRLHHFEK 346 (369)
T ss_dssp EEEEEEECH
T ss_pred eEEEEECcc
Confidence 999999964
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-40 Score=337.53 Aligned_cols=340 Identities=11% Similarity=0.060 Sum_probs=240.8
Q ss_pred CcceEEEEccCC---------cEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccc
Q psy2110 2 DLSIVASFDRRG---------QHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI 72 (622)
Q Consensus 2 ~~V~~~~fspdg---------~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 72 (622)
..|.+|+|+|++ ++||+|+.++.. ....+++..+++++.|++|++|++..... ..
T Consensus 134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------~~~~~~~~~laS~s~D~tI~iWd~~~~~~--------~~ 197 (524)
T 2j04_B 134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------EPLNEHLEMFDKEKHSSCIQIFKMNTSTL--------HC 197 (524)
T ss_dssp C--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------CEEEEEEEEETTTC--------CE
T ss_pred CceeEEEecccCCCCccCcCCeEEEEEEecccC--------CccchhhhhhccCCCCceEEEEEccCCCC--------Cc
Confidence 468999999987 899999876532 11246778899999999999999864210 01
Q ss_pred hhhhhhcc-ccceeEEEEcCC------CCEEEEecCCCCeEEEEEcCCCce-----------EEEEeccCcceeEEEEee
Q psy2110 73 QKLQDLVN-KTMWKKCCFSGD------GEYVCAGSARQHALYIWEKSVGNL-----------VKILHGTKGELLLDVVEF 134 (622)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~sp~------~~~l~~~~~~~~~i~vwd~~~~~~-----------~~~~~~~~~~v~~~~~~~ 134 (622)
.....+.+ ...+.+++|+|+ +.+||+++.| ++|++||+.++.. ...+.+|...+
T Consensus 198 ~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D-gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v------- 269 (524)
T 2j04_B 198 VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE-GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLI------- 269 (524)
T ss_dssp EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT-SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCE-------
T ss_pred eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC-CeEEEEEcCCCccccccceeecCceEEEEcCCCCE-------
Confidence 11122333 356889999997 5799999975 9999999986642 23567777766
Q ss_pred cCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCccc-ccccccccCCCcccccccccceEEE--EECCCC-CEEE
Q psy2110 135 DGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI-AKIISAHMHPEFDGALDCISLAVTC--AFNKRG-TLLA 210 (622)
Q Consensus 135 ~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g-~~l~ 210 (622)
++++|++++ .|++|+.||+|++||+.++.. ...+..|. ..|.++ +|+|+| ++|+
T Consensus 270 ----------~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~-----------~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 270 ----------TTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHD-----------SYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp ----------EEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSS-----------SCEEEEEEECCTTSCCEEE
T ss_pred ----------EEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeeccc-----------ccEEEEEEEcCCCCCeEEE
Confidence 699999864 899999999999999987643 33355554 358888 678888 8999
Q ss_pred EEeCCCeEEEEEcCCCceEEEeccCCc--CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeC
Q psy2110 211 VGCNDGRIVLWDFLTRGIAKIISAHMH--PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHP 287 (622)
Q Consensus 211 ~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 287 (622)
+++.|++|++||+.++++...+.+|.. .|.+++|+|+++.|++++.|++|++||++++.+...+. |...|.+++|+|
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp 407 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR 407 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC
Confidence 999999999999999887777777653 58899999999999999999999999999998766554 889999999999
Q ss_pred CCCeEEEEeeCCCcEEEEEecCCceeeccc-----CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC-CccEEEEEecC
Q psy2110 288 RNDHMFLVCPMRHAAVLVDTDGDHQIVPID-----EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP-ALELKASFKAS 361 (622)
Q Consensus 288 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~ 361 (622)
+++ ++++++.|+.+++|++... ...... .+...+..++|+|+++.+.. .. .+.+|+.. ++.++..+.+|
T Consensus 408 ~g~-~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~gh 482 (524)
T 2j04_B 408 LHP-MVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKIDAH 482 (524)
T ss_dssp SCC-BCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC-------------C
T ss_pred CCC-eEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcceeeecCC
Confidence 988 5788999999999998653 111111 11124668899999985532 22 23344332 46778889999
Q ss_pred CCCEEEEEEcCCCC---EEEEEeCCCcEEEEecc
Q psy2110 362 TTAIKSIEFARRGN---CLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 362 ~~~i~~~~~s~~~~---~l~~~~~d~~i~i~d~~ 392 (622)
...|.+++|+|++. ++++|+.+|.|+||+++
T Consensus 483 ~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 483 GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred CceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 99999999999964 89999999999999987
No 54
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.2e-37 Score=333.94 Aligned_cols=292 Identities=17% Similarity=0.326 Sum_probs=240.8
Q ss_pred eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCccc-----ccccccccCCCccc
Q psy2110 116 LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGI-----AKIISAHMHPEFDG 189 (622)
Q Consensus 116 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~~~ 189 (622)
....+++|.+.| ++++|+|++ ++|++|+.|++|++|++.+... ...+..|.
T Consensus 374 ~~~~l~~H~~~V-----------------~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~------ 430 (694)
T 3dm0_A 374 LKGTMRAHTDMV-----------------TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS------ 430 (694)
T ss_dssp EEEEEECCSSCE-----------------EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS------
T ss_pred hhhhcccCCcee-----------------EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC------
Confidence 345688999988 599999875 6999999999999999976432 23344443
Q ss_pred ccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy2110 190 ALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE 269 (622)
Q Consensus 190 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~ 269 (622)
..|.+++|+|++++|++|+.|+.|++||+.++...+.+.+|...|.+++|+|++++|++++.|++|++||+....
T Consensus 431 -----~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~ 505 (694)
T 3dm0_A 431 -----HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505 (694)
T ss_dssp -----SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred -----CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence 358999999999999999999999999999999999999999999999999999999999999999999975432
Q ss_pred EEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCC--CEEEEEecCCeEEEE
Q psy2110 270 CEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG--QHVVTGNSKGKVLVL 347 (622)
Q Consensus 270 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~ 347 (622)
...... ....|...+.+++|+|++ ..+++++.|+.|++|
T Consensus 506 ~~~~~~---------------------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vw 546 (694)
T 3dm0_A 506 KYTISE---------------------------------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546 (694)
T ss_dssp EEEECS---------------------------------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEE
T ss_pred ceeecc---------------------------------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEE
Confidence 211110 112355667788888876 579999999999999
Q ss_pred eCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCC
Q psy2110 348 SCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG 427 (622)
Q Consensus 348 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 427 (622)
|++++++...+.+|...|++++|+|++++|++++.|+.|++||+.. ...+..+ .....+.+++|+|++
T Consensus 547 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~---------~~~~~~~---~~~~~v~~~~~sp~~ 614 (694)
T 3dm0_A 547 NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE---------GKKLYSL---EANSVIHALCFSPNR 614 (694)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT---------TEEEECC---BCSSCEEEEEECSSS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC---------CceEEEe---cCCCcEEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999983 2233333 234567889999999
Q ss_pred CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCC------------------ceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110 428 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGE------------------LLLDVVWHPVRPIIASIS-SGVVSLWAQN 488 (622)
Q Consensus 428 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------------~v~~v~~sp~~~~l~s~~-dg~v~iw~~~ 488 (622)
.+|++++ ++.|+|||+.+++.+..+..+... .+++++|+|++++|++++ ||+|+||++.
T Consensus 615 ~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 615 YWLCAAT--EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SEEEEEE--TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cEEEEEc--CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9988876 567999999999988877543210 267899999999999999 9999999984
No 55
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-37 Score=305.74 Aligned_cols=284 Identities=15% Similarity=0.218 Sum_probs=255.1
Q ss_pred hccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110 78 LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157 (622)
Q Consensus 78 ~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 157 (622)
..+...+.+++|+|++++|++++.+ +.|++||+.+++.+..+.+|...+ ++++|+|++++|+
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~l~ 90 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKD-SSASVWYSLNGERLGTLDGHTGTI-----------------WSIDVDCFTKYCV 90 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESS-SCEEEEETTTCCEEEEECCCSSCE-----------------EEEEECTTSSEEE
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCC-CEEEEEeCCCchhhhhhhhcCCcE-----------------EEEEEcCCCCEEE
Confidence 3455668899999999999999975 999999999999999999999988 5999999999999
Q ss_pred EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCc-----
Q psy2110 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-----GRIVLWDFLTRG----- 227 (622)
Q Consensus 158 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~iwd~~~~~----- 227 (622)
+++.||.|++||+.+++....+... ..+.+++|+|++++|++++.+ +.|++|++.+..
T Consensus 91 s~~~dg~i~iwd~~~~~~~~~~~~~------------~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNGQCVATWKSP------------VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECS------------SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred EEeCCCeEEEEECCCCcEEEEeecC------------CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence 9999999999999998887776622 358999999999999999998 999999997653
Q ss_pred ------eEEEeccCCc--CeeEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEe-CCCCeEEEEEeCCCCeEEEEee
Q psy2110 228 ------IAKIISAHMH--PVCSISWSRNGYKIISASTDNNVCIWDVLT-GECEQKYR-FPSPILKVQFHPRNDHMFLVCP 297 (622)
Q Consensus 228 ------~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~ 297 (622)
....+..|.. .+.+++|+|++++|++++.||.|++||+.+ ++....+. +...|.+++|+|++. ++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 237 (369)
T 3zwl_B 159 TKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSS 237 (369)
T ss_dssp EEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEE
T ss_pred cccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-EEEEec
Confidence 3344556666 999999999999999999999999999998 67777777 788999999999887 578888
Q ss_pred CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCC--------------eEEEEeCCCccEEEEEecCCC
Q psy2110 298 MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKG--------------KVLVLSCPALELKASFKASTT 363 (622)
Q Consensus 298 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~ 363 (622)
.++.+++||+++...+..+. +...+..++|+|+++++++++.++ .+++||..+++.+..+..|..
T Consensus 238 ~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 316 (369)
T 3zwl_B 238 RDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG 316 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS
T ss_pred CCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC
Confidence 99999999999888777766 677889999999999999999888 899999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110 364 AIKSIEFARRGNCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 364 ~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 393 (622)
.|++++|+|++++|++++.|+.|++|++..
T Consensus 317 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 317 PLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 999999999999999999999999999984
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.2e-37 Score=313.03 Aligned_cols=318 Identities=17% Similarity=0.307 Sum_probs=273.6
Q ss_pred hccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110 78 LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157 (622)
Q Consensus 78 ~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 157 (622)
+.+|......+++++|++|++|+.+ |.|++||+.+++.+..+.+|.+.| ++++|+ +++|+
T Consensus 114 l~~h~~~v~~~~~~~g~~l~sg~~d-g~i~vwd~~~~~~~~~~~~h~~~v-----------------~~~~~~--~~~l~ 173 (445)
T 2ovr_B 114 LKGHDDHVITCLQFCGNRIVSGSDD-NTLKVWSAVTGKCLRTLVGHTGGV-----------------WSSQMR--DNIII 173 (445)
T ss_dssp EECSTTSCEEEEEEETTEEEEEETT-SCEEEEETTTCCEEEECCCCSSCE-----------------EEEEEE--TTEEE
T ss_pred ecccCCCcEEEEEEcCCEEEEEECC-CcEEEEECCCCcEEEEEcCCCCCE-----------------EEEEec--CCEEE
Confidence 3444432222466679999999975 999999999999999999999988 589997 66999
Q ss_pred EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCc
Q psy2110 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH 237 (622)
Q Consensus 158 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 237 (622)
+|+.||+|++||+.+++....+..|. ..|.+++|+ ++.+++|+.||.|++||+.+++.+..+.+|..
T Consensus 174 s~~~dg~i~vwd~~~~~~~~~~~~h~-----------~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 240 (445)
T 2ovr_B 174 SGSTDRTLKVWNAETGECIHTLYGHT-----------STVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240 (445)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCS-----------SCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred EEeCCCeEEEEECCcCcEEEEECCCC-----------CcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc
Confidence 99999999999999998888777665 348888885 57899999999999999999999999999999
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110 238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316 (622)
Q Consensus 238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 316 (622)
.|.+++| ++++|++++.||.|++||+++++++..+. +...+.++.| ++. .+++++.++.+++||+++...+..+
T Consensus 241 ~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 315 (445)
T 2ovr_B 241 AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTL 315 (445)
T ss_dssp CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEE
T ss_pred cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEE
Confidence 9999999 78899999999999999999999998887 7789999999 444 6889999999999999999999999
Q ss_pred cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110 317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA---STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 393 (622)
..|...+.++.+ +++++++|+.||.|++||+++++.+..+.. |...|++++|+ +++|++++.||.|++||+.
T Consensus 316 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~- 390 (445)
T 2ovr_B 316 TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK- 390 (445)
T ss_dssp CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT-
T ss_pred cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC-
Confidence 989888877765 577999999999999999999999999986 88899999996 5799999999999999998
Q ss_pred ccccCCCCCCCcceeee---ccccceeeeeEEEcCCCCeEEEeeCCCCe----EEEEECCC
Q psy2110 394 VLNAGKDGDPEPIQKLQ---DLVNKTMWKKCCFSGDGEYVCAGSARQHA----LYIWEKSV 447 (622)
Q Consensus 394 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~d~~----i~iwd~~~ 447 (622)
....+..+. .......+.+++|+|+|.++++++. ||. |.|||+..
T Consensus 391 --------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~-dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 391 --------TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR-NGTEETKLLVLDFDV 442 (445)
T ss_dssp --------TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS-SSSSCCEEEEEECCC
T ss_pred --------CCceeeeeeccccCCCCceEEEEEecCCEEEEEEccc-CCCCccEEEEEECCC
Confidence 334444442 2234567889999999999999997 776 99999864
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-36 Score=313.03 Aligned_cols=322 Identities=14% Similarity=0.245 Sum_probs=268.2
Q ss_pred ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccc
Q psy2110 115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI 194 (622)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (622)
.....+.+|...+. .++.+ ++++|++|+.||+|++||+.+++.+..+..|.
T Consensus 112 ~~~~~l~~h~~~v~----------------~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~----------- 162 (464)
T 3v7d_B 112 PQRTTLRGHMTSVI----------------TCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD----------- 162 (464)
T ss_dssp CEEEEEECCSSSCE----------------EEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCS-----------
T ss_pred cceEEEcCCCCCcE----------------EEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC-----------
Confidence 35567889988863 45555 57799999999999999999998888887665
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEc--CCCCEEEEEeCCCcEEEEECCCCcEE-
Q psy2110 195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS--RNGYKIISASTDNNVCIWDVLTGECE- 271 (622)
Q Consensus 195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~s~~~d~~i~iwd~~~~~~~- 271 (622)
..|.+++|+|++ +|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +++.+|++++.|+.|++||+.+++..
T Consensus 163 ~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp SCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 358999999988 99999999999999999999999999999999999998 57889999999999999999877532
Q ss_pred ----------------------EEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEE
Q psy2110 272 ----------------------QKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASF 328 (622)
Q Consensus 272 ----------------------~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 328 (622)
..+. +...+.++ ++++. ++++++.++.+++||+++...+..+..|...+.+++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 2222 55667666 45454 6888999999999999999999999999999999999
Q ss_pred eeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCccee
Q psy2110 329 DRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK 408 (622)
Q Consensus 329 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 408 (622)
+|+++++++|+.||.|++||+++++++..+.+|...|.+++|+ +++|++++.|+.|++||+.. ......
T Consensus 319 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~---------~~~~~~ 387 (464)
T 3v7d_B 319 DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND---------YSRKFS 387 (464)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT---------CCEEEE
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC---------Cceeee
Confidence 9999999999999999999999999999999999999999997 57999999999999999983 222222
Q ss_pred eeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEE-EecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110 409 LQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI-LHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA 486 (622)
Q Consensus 409 ~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~ 486 (622)
.. ....+..++|+|++++|++++ ++.|++||+.+++++.. +.+|.. .|.+++|+ ...++++++ ||.+.+|-
T Consensus 388 ~~---~~~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~~g~~~~~~~~~~~~-~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 388 YH---HTNLSAITTFYVSDNILVSGS--ENQFNIYNLRSGKLVHANILKDAD-QIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EE---CTTCCCEEEEEECSSEEEEEE--TTEEEEEETTTCCEEESCTTTTCS-EEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred ec---CCCCccEEEEEeCCCEEEEec--CCeEEEEECCCCcEEehhhccCCC-cEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 21 223345679999999999988 78999999999999886 455554 49999997 334455555 77666654
Q ss_pred c
Q psy2110 487 Q 487 (622)
Q Consensus 487 ~ 487 (622)
+
T Consensus 461 l 461 (464)
T 3v7d_B 461 L 461 (464)
T ss_dssp E
T ss_pred e
Confidence 3
No 58
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.7e-37 Score=302.48 Aligned_cols=288 Identities=15% Similarity=0.235 Sum_probs=239.6
Q ss_pred CCcceEEEEccC-CcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhc
Q psy2110 1 SDLSIVASFDRR-GQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV 79 (622)
Q Consensus 1 t~~V~~~~fspd-g~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 79 (622)
++.|+|++|+|+ +++||||+.||+|+|||+...+... .+ ....+.
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~-------------~~---------------------~~~~l~ 83 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY-------------GI---------------------PQRALR 83 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS-------------EE---------------------EEEEEC
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc-------------ce---------------------eeEEEe
Confidence 478999999998 6899999999999999975432110 00 001111
Q ss_pred -cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110 80 -NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV 158 (622)
Q Consensus 80 -~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 158 (622)
+...+.+++|+|++++|++++.| +.|++|+............+...+ ..+.+++++.+|++
T Consensus 84 ~h~~~V~~~~~s~dg~~l~s~~~d-~~i~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~s 145 (340)
T 4aow_A 84 GHSHFVSDVVISSDGQFALSGSWD-GTLRLWDLTTGTTTRRFVGHTKDV-----------------LSVAFSSDNRQIVS 145 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCE-----------------EEEEECTTSSCEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEccc-ccceEEeecccceeeeecCCCCce-----------------eEEEEeecCcccee
Confidence 23457789999999999999976 999999999999888888888777 48899999999999
Q ss_pred eeCCCcEEEEecCCccccc-ccccccCCCcccccccccceEEEEECCCC--CEEEEEeCCCeEEEEEcCCCceEEEeccC
Q psy2110 159 GCNDGRIVLWDFLTRGIAK-IISAHMHPEFDGALDCISLAVTCAFNKRG--TLLAVGCNDGRIVLWDFLTRGIAKIISAH 235 (622)
Q Consensus 159 ~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 235 (622)
++.|+.+++||........ ....+. ..+..++|++++ .++++++.|+.|++||+.+++....+.+|
T Consensus 146 ~s~d~~~~~~d~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h 214 (340)
T 4aow_A 146 GSRDKTIKLWNTLGVCKYTVQDESHS-----------EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 214 (340)
T ss_dssp EETTSCEEEECTTSCEEEEECSSSCS-----------SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred ecCCCeEEEEEeCCCceEEEEecccc-----------CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC
Confidence 9999999999987653322 222222 357888998765 57889999999999999999999999999
Q ss_pred CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110 236 MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP 315 (622)
Q Consensus 236 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 315 (622)
.+.|++++|+|++++|++++.|+.|++||+++.+.+..+.+...+.+++|+|++. +++++.++.+++||+++...+..
T Consensus 215 ~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~ 292 (340)
T 4aow_A 215 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRY--WLCAATGPSIKIWDLEGKIIVDE 292 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSS--EEEEEETTEEEEEETTTTEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCc--eeeccCCCEEEEEECCCCeEEEe
Confidence 9999999999999999999999999999999999999999999999999999874 55667799999999987755443
Q ss_pred c---------cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc
Q psy2110 316 I---------DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE 353 (622)
Q Consensus 316 ~---------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 353 (622)
+ ..|...|.+++|+|+|++|++|+.||.|++||+.+|+
T Consensus 293 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 293 LKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 3 3578889999999999999999999999999998875
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-38 Score=321.35 Aligned_cols=342 Identities=13% Similarity=0.152 Sum_probs=263.2
Q ss_pred EEcCCCCEEEEecCCCCeEEEEEcCCCceEEEE-eccCcceeEEEEeecCccccccceeEEEEcC-CCCEEEEeeCCCcE
Q psy2110 88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL-HGTKGELLLDVVEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRI 165 (622)
Q Consensus 88 ~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i 165 (622)
.|+|+++.+++++ .|+ .+++.+..+ .+|.+.| ++++|+| ++++|++|+.||+|
T Consensus 34 ~f~~~~~~~~~~~-------~w~-~~g~~~~~~~~~h~~~V-----------------~~~~~s~~~~~~l~s~s~dg~v 88 (437)
T 3gre_A 34 EFGPIQEIVRSPN-------MGN-LRGKLIATLMENEPNSI-----------------TSSAVSPGETPYLITGSDQGVI 88 (437)
T ss_dssp GGCCCCCCCCCCC-------GGG-CCCCEEEEECTTTTSCE-----------------EEEEEECSSSCEEEEEETTSEE
T ss_pred hcCCccccccccc-------ccc-ccceEEeeeccCCCCce-----------------EEEEECCCCCCEEEEecCCceE
Confidence 5789998888765 377 457888888 8898888 5999999 99999999999999
Q ss_pred EEEecCC---ccccc-ccc-cccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC---CCceEEEecc---
Q psy2110 166 VLWDFLT---RGIAK-IIS-AHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL---TRGIAKIISA--- 234 (622)
Q Consensus 166 ~vw~~~~---~~~~~-~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~---~~~~~~~~~~--- 234 (622)
++||+.+ +.... .+. .| ...|.+++|+|++++|++++.||.|++||+. +++....+..
T Consensus 89 ~vwd~~~~~~~~~~~~~~~~~h-----------~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i 157 (437)
T 3gre_A 89 KIWNLKEIIVGEVYSSSLTYDC-----------SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECI 157 (437)
T ss_dssp EEEEHHHHHTTCCCSCSEEEEC-----------SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEeECcccccCcccceeeeccC-----------CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccccee
Confidence 9999877 33111 111 12 1469999999999999999999999999995 5554443332
Q ss_pred ---------CCcCeeEEE--EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110 235 ---------HMHPVCSIS--WSRNGYKIISASTDNNVCIWDVLTGECEQKYR---FPSPILKVQFHPRNDHMFLVCPMRH 300 (622)
Q Consensus 235 ---------~~~~v~~~~--~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~ 300 (622)
+...+.++. +++++.+|++++.|+.|++||+++++++..+. |...|.+++|+|++. ++++++.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg 236 (437)
T 3gre_A 158 RKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC-VLILGTTRG 236 (437)
T ss_dssp EEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTS
T ss_pred EEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCC
Confidence 445666666 56789999999999999999999999998887 568999999999976 688899999
Q ss_pred cEEEEEecCCceeeccc-CCCCceEEEEEe----eCCCEEEEEecCCeEEEEeCCCccEEEEEecC--------------
Q psy2110 301 AAVLVDTDGDHQIVPID-EDSDLSIVASFD----RRGQHVVTGNSKGKVLVLSCPALELKASFKAS-------------- 361 (622)
Q Consensus 301 ~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------- 361 (622)
.+++||++....+..+. .+...+.+++++ +++.+|++++.||.|++||+++++++..+..|
T Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (437)
T 3gre_A 237 IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK 316 (437)
T ss_dssp CEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCS
T ss_pred eEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccc
Confidence 99999999988887765 677789999655 56789999999999999999999988888744
Q ss_pred ------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecccc-ceeeeeEEEcCCCC
Q psy2110 362 ------------TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN-KTMWKKCCFSGDGE 428 (622)
Q Consensus 362 ------------~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~ 428 (622)
...|++++|+ ++++|++++.|+.|++||+. .......+..+.. ...+....++++..
T Consensus 317 ~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (437)
T 3gre_A 317 GLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN---------ELSSSKAVISPSRFSDVFIPTQVTANLT 386 (437)
T ss_dssp SGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT---------CGGGCEEEECC--CCCEEEEEEEETTEE
T ss_pred ccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC---------CcccceEEecccccCceEEEEEeecceE
Confidence 4457888998 77899999999999999998 3345555554432 23344556666665
Q ss_pred eEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCC--CCEEEEEe-CCcEEEee
Q psy2110 429 YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPV--RPIIASIS-SGVVSLWA 486 (622)
Q Consensus 429 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l~s~~-dg~v~iw~ 486 (622)
+++.. |+...+........|.+. |++++|+++ +.+|++++ ||.|+||+
T Consensus 387 ~~~~~---------~~~~~~~~~~~~~~h~~~-I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 387 MLLRK---------MKRTSTHSVDDSLYHHDI-INSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEE---------CC-------------CCC-EEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEEe---------cccccccccCcccccccc-eeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 55544 222333444555667776 999999998 77999999 99999995
No 60
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.9e-37 Score=307.71 Aligned_cols=278 Identities=15% Similarity=0.179 Sum_probs=233.9
Q ss_pred cceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceEEEec--cCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcE
Q psy2110 195 SLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGIAKIIS--AHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGEC 270 (622)
Q Consensus 195 ~~v~~~~~s~~g-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~ 270 (622)
..|.+++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++.|+.|++||+.+ ..
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~ 152 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SV 152 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cc
Confidence 458999999999 999999999999999999888777665 6999999999999 789999999999999999996 44
Q ss_pred EEEEe-C---CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCC-EEEEEecCCeEE
Q psy2110 271 EQKYR-F---PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQ-HVVTGNSKGKVL 345 (622)
Q Consensus 271 ~~~~~-~---~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~ 345 (622)
...+. + ...+.+++|+|++. ++++++.++.+++||+ ....+..+..|...+.+++|+|+++ ++++++.|+.|+
T Consensus 153 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 230 (383)
T 3ei3_B 153 IQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVK 230 (383)
T ss_dssp EEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred eEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEE
Confidence 44443 3 37799999999987 6788999999999999 4667788888999999999999999 999999999999
Q ss_pred EEeCCC----ccEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc-------
Q psy2110 346 VLSCPA----LELKASFKASTTAIKSIEFAR-RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV------- 413 (622)
Q Consensus 346 i~d~~~----~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------- 413 (622)
+||+++ +.++..+ .|...|.+++|+| ++++|++++.|+.|++||++... ....+..+.
T Consensus 231 iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~ 300 (383)
T 3ei3_B 231 LWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS---------KPDQIIIHPHRQFQHL 300 (383)
T ss_dssp EEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT---------SCSEEEECCBCCCTTS
T ss_pred EEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc---------cccccccccccccccc
Confidence 999987 6666666 6899999999999 99999999999999999998422 112222111
Q ss_pred --------cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCC-CCceeEEEECCCCCEEEEEeCCcEEE
Q psy2110 414 --------NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK-GELLLDVVWHPVRPIIASISSGVVSL 484 (622)
Q Consensus 414 --------~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~s~~dg~v~i 484 (622)
....+..++|+|+|++ +++. |+.|++||+.+++++..+.++. ...+..++|+|++++|++++||.|++
T Consensus 301 ~~~~~~~~p~~~~~~~~~s~dg~~--s~s~-d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~i 377 (383)
T 3ei3_B 301 TPIKATWHPMYDLIVAGRYPDDQL--LLND-KRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILI 377 (383)
T ss_dssp CCCCCEECSSSSEEEEECBCCTTT--CTTC-CCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEE
T ss_pred cceEEeccCCCCceEEEecCCccc--ccCC-CCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEE
Confidence 1123344677777777 5554 9999999999999999998753 34477779999999999999999999
Q ss_pred eecC
Q psy2110 485 WAQN 488 (622)
Q Consensus 485 w~~~ 488 (622)
|+++
T Consensus 378 w~~~ 381 (383)
T 3ei3_B 378 WNRE 381 (383)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 61
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6e-38 Score=319.97 Aligned_cols=291 Identities=15% Similarity=0.207 Sum_probs=230.8
Q ss_pred eEEEEcC-CCCEEEEeeCCCcEEEEecCCcccccccc--cccCCCcccccccccceEEEEECC-CCCEEEEEeCCCeEEE
Q psy2110 145 VTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIIS--AHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVL 220 (622)
Q Consensus 145 ~~~~~s~-d~~~l~s~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~i 220 (622)
++++|+| ++++||+|+.||+|+|||+.++.....+. +|. ..|.+++|+| ++++|++++.||+|++
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~-----------~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG-----------GSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSS-----------CCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCC-----------CCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 6999999 56799999999999999998876544333 333 4589999998 6899999999999999
Q ss_pred EEcCCCceEEEecc--CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEee
Q psy2110 221 WDFLTRGIAKIISA--HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCP 297 (622)
Q Consensus 221 wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~ 297 (622)
||+.++........ +...+.+++|++++++|++|+.||.|++||++... +..+. |...|.+++|+|+++.++++++
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEEEecccceEEeeeecCCCceEEEEec
Confidence 99987654433333 34467899999999999999999999999987544 34444 7889999999999999999999
Q ss_pred CCCcEEEEEecCCcee---ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCC------EEEE
Q psy2110 298 MRHAAVLVDTDGDHQI---VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTA------IKSI 368 (622)
Q Consensus 298 ~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------i~~~ 368 (622)
.|+.|++||++..... .....|...|.+++|+|+|++|++++.||.|++||+.+++....+..|... +...
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 9999999999876443 334568889999999999999999999999999999998887777665432 1122
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC
Q psy2110 369 EFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG 448 (622)
Q Consensus 369 ~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~ 448 (622)
.|+|++..+ .+.+++++..+++++.+++.|++||..++
T Consensus 351 ~~~~~~~~~------------------------------------------~~~~~~d~~~~~~~~~~~~~i~iwd~~~g 388 (435)
T 4e54_B 351 AWHPRYNLI------------------------------------------VVGRYPDPNFKSCTPYELRTIDVFDGNSG 388 (435)
T ss_dssp EECSSSSCE------------------------------------------EEECCCCTTSCCSSTTCCCCEEEECSSSC
T ss_pred EEcCCCCEE------------------------------------------EEEEcCCCCeEEEEecCCCEEEEEECCCC
Confidence 233333222 23555666666666665778999999999
Q ss_pred eeEEEEecCCCCceeEE-EECCCCCEEEEEeCCcEEEeecCC
Q psy2110 449 NLVKILHGTKGELLLDV-VWHPVRPIIASISSGVVSLWAQNQ 489 (622)
Q Consensus 449 ~~~~~~~~~~~~~v~~v-~~sp~~~~l~s~~dg~v~iw~~~~ 489 (622)
+++..+.+++...|.++ +|+|++++|++++|++|+||++..
T Consensus 389 ~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~ 430 (435)
T 4e54_B 389 KMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQE 430 (435)
T ss_dssp CEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC-
T ss_pred cEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCc
Confidence 99988875544448887 699999999998899999999864
No 62
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.3e-37 Score=308.67 Aligned_cols=299 Identities=16% Similarity=0.231 Sum_probs=244.2
Q ss_pred EEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCcccccccccccCC
Q psy2110 107 YIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP 185 (622)
Q Consensus 107 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 185 (622)
.+|++...+....+.+|...| ++++|+|++ ++|++|+.||.|++||+.+++....+....+.
T Consensus 56 ~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~ 118 (383)
T 3ei3_B 56 FIRSLKSYKLHRTASPFDRRV-----------------TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPG 118 (383)
T ss_dssp HHHHHTTCEEEEEECCCSSCE-----------------EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTT
T ss_pred ccccccccceEEeccCCCCCE-----------------EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcC
Confidence 345556677778889999988 599999999 89999999999999999988776665431111
Q ss_pred CcccccccccceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceEEEecc---CCcCeeEEEEcCCCCEEEEEeCCCcEE
Q psy2110 186 EFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISA---HMHPVCSISWSRNGYKIISASTDNNVC 261 (622)
Q Consensus 186 ~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~ 261 (622)
..|.+++|+| ++++|++++.|+.|++||+.+ .....+.. |...|.+++|+|++++|++++.|+.|+
T Consensus 119 ---------~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 188 (383)
T 3ei3_B 119 ---------DAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL 188 (383)
T ss_dssp ---------CBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred ---------CceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEE
Confidence 4689999999 789999999999999999986 44555544 447899999999999999999999999
Q ss_pred EEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC----CceeecccCCCCceEEEEEee-CCCEE
Q psy2110 262 IWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG----DHQIVPIDEDSDLSIVASFDR-RGQHV 335 (622)
Q Consensus 262 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~l 335 (622)
+||++ ++.+..+. |...|.+++|+|+++.++++++.|+.+++||+++ ...+..+ .|...+.+++|+| ++++|
T Consensus 189 i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l 266 (383)
T 3ei3_B 189 LLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKL 266 (383)
T ss_dssp EEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEE
T ss_pred EEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEE
Confidence 99994 66666666 8899999999999988899999999999999987 4444444 6889999999999 99999
Q ss_pred EEEecCCeEEEEeCCCccEEEEEecCC-----------------CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccC
Q psy2110 336 VTGNSKGKVLVLSCPALELKASFKAST-----------------TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAG 398 (622)
Q Consensus 336 ~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~ 398 (622)
++++.|+.|++||+++++....+..|. ..+..++|+|++++ +++.|+.|++||+.
T Consensus 267 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~------ 338 (383)
T 3ei3_B 267 LTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDAN------ 338 (383)
T ss_dssp EEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETT------
T ss_pred EEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecC------
Confidence 999999999999999888766666443 23444666666665 66789999999998
Q ss_pred CCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC
Q psy2110 399 KDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV 447 (622)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~ 447 (622)
....+..+..+.....+..++|+|+|++|++++ |+.|+|||+++
T Consensus 339 ---~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s--d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 ---SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM--GFNILIWNRED 382 (383)
T ss_dssp ---TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE--TTEEEEEECC-
T ss_pred ---CCceeeeecCCCCCceEEEEEEecCccEEEEec--CCcEEEEecCC
Confidence 345566666544445556679999999999996 78999999864
No 63
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-38 Score=320.49 Aligned_cols=322 Identities=14% Similarity=0.193 Sum_probs=250.8
Q ss_pred CCcceEEEEcc-CCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhc
Q psy2110 1 SDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV 79 (622)
Q Consensus 1 t~~V~~~~fsp-dg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 79 (622)
++.|++++|+| ++++||+|+.||+|+|||+...+.. ........+.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~---------------------------------~~~~~~~~~~ 109 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG---------------------------------EVYSSSLTYD 109 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT---------------------------------CCCSCSEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccC---------------------------------cccceeeecc
Confidence 36788999999 8889999888888888886431100 0011111223
Q ss_pred cccceeEEEEcCCCCEEEEecCCCCeEEEEEcC---CCceEEEEeccCcceeEEEEeecCccccccceeEEE--EcCCCC
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS---VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCA--FNKRGT 154 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~--~s~d~~ 154 (622)
+...+.+++|+|++++|++++.| +.|++||+. +++....+.+| .+........+ ....+.++. +++++.
T Consensus 110 h~~~v~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~---~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 110 CSSTVTQITMIPNFDAFAVSSKD-GQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG---KNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT-SEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS---SCCCEEEEEEEECSSCE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCC-CEEEEEEeccccCCceeeccccc--eeEEEEccCcc---cccCceEEEEEEcCCCC
Confidence 45678899999999999999975 999999994 77777777766 22111111000 122234665 678999
Q ss_pred EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec-
Q psy2110 155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS- 233 (622)
Q Consensus 155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~- 233 (622)
+|++++.|+.|++||+.+++.+..+..+.+. ..|.+++|+|++++|++|+.||.|++||+.+++++..+.
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~---------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 254 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERLQIIENSPRH---------GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF 254 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCGGG---------CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC
T ss_pred EEEEEeCCCeEEEEeCCCCeeeEEEccCCCC---------CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec
Confidence 9999999999999999999888887763111 358999999999999999999999999999999988886
Q ss_pred cCCcCeeEEEEcC----CCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110 234 AHMHPVCSISWSR----NGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD 308 (622)
Q Consensus 234 ~~~~~v~~~~~s~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 308 (622)
.|...|.+++|+| ++.+|++++.||.|++||+++++++..+. +...+..+.|+|++..+ .+
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~--------- 320 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL-----EE--------- 320 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG-----GG---------
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc-----cc---------
Confidence 7888999996664 67799999999999999999999988887 66777778888876532 00
Q ss_pred CCceeecccC--CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec--------------------------
Q psy2110 309 GDHQIVPIDE--DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA-------------------------- 360 (622)
Q Consensus 309 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------------- 360 (622)
..+.. |...+.+++|+ ++++|++|+.||.|++||+.+++....+.+
T Consensus 321 -----~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (437)
T 3gre_A 321 -----LNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKR 394 (437)
T ss_dssp -----CCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-
T ss_pred -----ceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccc
Confidence 11223 67788999999 889999999999999999999887766654
Q ss_pred -----------CCCCEEEEEEcCC--CCEEEEEeCCCcEEEEe
Q psy2110 361 -----------STTAIKSIEFARR--GNCLLVNTGDRLIRVYN 390 (622)
Q Consensus 361 -----------~~~~i~~~~~s~~--~~~l~~~~~d~~i~i~d 390 (622)
|...|++++|+++ +.+|++++.||.|+||+
T Consensus 395 ~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 395 TSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999988 77999999999999995
No 64
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.5e-37 Score=330.20 Aligned_cols=288 Identities=15% Similarity=0.258 Sum_probs=235.3
Q ss_pred CCcceEEEEccCC-cEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhc
Q psy2110 1 SDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV 79 (622)
Q Consensus 1 t~~V~~~~fspdg-~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 79 (622)
++.|+|++|+|++ ++||||+.||+|+||++....... + .....+.
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~------------~----------------------~~~~~~~ 427 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY------------G----------------------VAQRRLT 427 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS------------C----------------------EEEEEEE
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc------------c----------------------cccceec
Confidence 4789999999975 799999999999999974321100 0 0001112
Q ss_pred -cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110 80 -NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV 158 (622)
Q Consensus 80 -~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 158 (622)
|...+.+++|+|++++|++|+.| ++|+|||+.+++....+.+|...| ++++|+|++++|++
T Consensus 428 ~h~~~v~~v~~s~~g~~l~sgs~D-g~v~vwd~~~~~~~~~~~~h~~~v-----------------~~~~~s~~~~~l~s 489 (694)
T 3dm0_A 428 GHSHFVEDVVLSSDGQFALSGSWD-GELRLWDLAAGVSTRRFVGHTKDV-----------------LSVAFSLDNRQIVS 489 (694)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCE-----------------EEEEECTTSSCEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCC-CcEEEEECCCCcceeEEeCCCCCE-----------------EEEEEeCCCCEEEE
Confidence 33456789999999999999975 999999999999999999999998 59999999999999
Q ss_pred eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCC--CEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110 159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG--TLLAVGCNDGRIVLWDFLTRGIAKIISAHM 236 (622)
Q Consensus 159 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 236 (622)
|+.|++|++||............. . .+...|.+++|+|++ ..|++++.|+.|++||+.+++....+.+|.
T Consensus 490 ~s~D~~i~iwd~~~~~~~~~~~~~-~-------~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~ 561 (694)
T 3dm0_A 490 ASRDRTIKLWNTLGECKYTISEGG-E-------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT 561 (694)
T ss_dssp EETTSCEEEECTTSCEEEEECSST-T-------SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EeCCCEEEEEECCCCcceeeccCC-C-------CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence 999999999998654222211110 0 011458999999987 589999999999999999999999999999
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316 (622)
Q Consensus 237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 316 (622)
+.|++++|+|++++|++++.||.|++||+.+++.+..+.....+.+++|+|++. ++ +++.++.|++||+++...+..+
T Consensus 562 ~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~-~l-~~~~~~~i~iwd~~~~~~~~~~ 639 (694)
T 3dm0_A 562 GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRY-WL-CAATEHGIKIWDLESKSIVEDL 639 (694)
T ss_dssp SCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSS-EE-EEEETTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCc-EE-EEEcCCCEEEEECCCCCChhhh
Confidence 999999999999999999999999999999999998888888999999999876 33 3445677999999988766544
Q ss_pred cCC-------------------CCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110 317 DED-------------------SDLSIVASFDRRGQHVVTGNSKGKVLVLSCP 350 (622)
Q Consensus 317 ~~~-------------------~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 350 (622)
..+ ...+.+++|+|+|++|++|+.||.|++|++.
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 640 KVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 322 1236789999999999999999999999985
No 65
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.1e-36 Score=307.55 Aligned_cols=285 Identities=14% Similarity=0.166 Sum_probs=250.7
Q ss_pred cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc------eEEEEeccCcceeEEEEeecCccccccceeEEEEcCC-
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN------LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR- 152 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d- 152 (622)
+...+.+++|+| ++|++++.+ |.|++|++.+++ .+..+.+|...| ++++|+|+
T Consensus 15 h~~~i~~~~~~~--~~l~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~ 74 (397)
T 1sq9_A 15 HDADIFSVSACN--SFTVSCSGD-GYLKVWDNKLLDNENPKDKSYSHFVHKSGL-----------------HHVDVLQAI 74 (397)
T ss_dssp SSSCEEEEEECS--SEEEEEETT-SEEEEEESBCCTTCCGGGGEEEEECCTTCE-----------------EEEEEEEEE
T ss_pred hhcCeEEEEecC--CeEEEEcCC-CEEEEEECCCcccccCCCcceEEecCCCcE-----------------EEEEEeccc
Confidence 445678999999 899999875 999999999988 788899999988 59999999
Q ss_pred ---C---CEEEEeeCCCcEEEEecCCccc-----ccccccccCCCcccccccccceEEEEEC----CCCCE-EEEEeCCC
Q psy2110 153 ---G---TLLAVGCNDGRIVLWDFLTRGI-----AKIISAHMHPEFDGALDCISLAVTCAFN----KRGTL-LAVGCNDG 216 (622)
Q Consensus 153 ---~---~~l~s~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~-l~~~~~dg 216 (622)
+ ++|++++.||.|++|++.+++. ...+..+.... ....|.+++|+ |++++ |++++.+|
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~l~~~~~dg 148 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM------KKHSFWALKWGASNDRLLSHRLVATDVKG 148 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG------GGSCEEEEEEECCC----CEEEEEEETTS
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc------CCCcEEEEEEeeccCCCCceEEEEEeCCC
Confidence 9 9999999999999999998876 55555442100 01358999999 99999 99999999
Q ss_pred eEEEEEcCC------CceEE-----Ee-------ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC--
Q psy2110 217 RIVLWDFLT------RGIAK-----II-------SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF-- 276 (622)
Q Consensus 217 ~i~iwd~~~------~~~~~-----~~-------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-- 276 (622)
.|++||+.+ ++.+. .+ ..|...|.+++|+|++ +|++++.|+.|++||+++++.+..+..
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 227 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH 227 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccc
Confidence 999999998 66655 66 4488999999999999 999999999999999999999888875
Q ss_pred -----CCCeEEEEEeCCCCeEEEEeeCC---CcEEEEEecCCceeecccC-------------CCCceEEEEEeeCCCEE
Q psy2110 277 -----PSPILKVQFHPRNDHMFLVCPMR---HAAVLVDTDGDHQIVPIDE-------------DSDLSIVASFDRRGQHV 335 (622)
Q Consensus 277 -----~~~v~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l 335 (622)
...+.+++|+|++. ++++++.+ +.+++||+++...+..+.. |...+.+++|+|++++|
T Consensus 228 ~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 306 (397)
T 1sq9_A 228 SMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 306 (397)
T ss_dssp ---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred cccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence 88999999999987 56777788 9999999999988888887 89999999999999999
Q ss_pred EEEecCCeEEEEeCCCccEEEEEe------cC---------------CCCEEEEEEcCCC----------CEEEEEeCCC
Q psy2110 336 VTGNSKGKVLVLSCPALELKASFK------AS---------------TTAIKSIEFARRG----------NCLLVNTGDR 384 (622)
Q Consensus 336 ~~~~~dg~i~i~d~~~~~~~~~~~------~~---------------~~~i~~~~~s~~~----------~~l~~~~~d~ 384 (622)
++++.||.|++||+.+++++..+. .| ...|++++|+|++ ++|++++.|+
T Consensus 307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 386 (397)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence 999999999999999999999999 88 9999999999998 7999999999
Q ss_pred cEEEEecc
Q psy2110 385 LIRVYNHQ 392 (622)
Q Consensus 385 ~i~i~d~~ 392 (622)
.|++|++.
T Consensus 387 ~i~iw~~~ 394 (397)
T 1sq9_A 387 SIRWFREA 394 (397)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEcC
Confidence 99999987
No 66
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-38 Score=316.51 Aligned_cols=311 Identities=9% Similarity=0.075 Sum_probs=250.8
Q ss_pred cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110 82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN 161 (622)
Q Consensus 82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 161 (622)
..+.+++|||||+++|+++.| ++|+ |...++.+ .+|...+ ++++|+|+| .
T Consensus 16 ~~v~sv~~SpDG~~iASas~D-~TV~--d~~~~~~l---~gh~~~v-----------------~~V~FsPdg-------~ 65 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPD-ISIG--QPKYAKDI---NCNSKNL-----------------FHVKEFPLE-------F 65 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSS-EEEE--EECCCSCC---SSBGGGT-----------------EEEEEECCC-------C
T ss_pred ccEEEEEECCCCCEEEEEcCC-ceee--ccccccee---cCCCccE-----------------EEEEECCCC-------C
Confidence 456689999999999999975 9999 76666544 7899988 599999999 4
Q ss_pred CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCc----
Q psy2110 162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH---- 237 (622)
Q Consensus 162 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---- 237 (622)
++.+.+|+.. ....+..... ..|.+++|||+|++||+++.||.|++|+..+ ++..+. |..
T Consensus 66 ~~~~~~~~~~---~~~~~~~~~~----------~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 66 ENKLDFELAQ---QNGLLNSQPV----------CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp CCTTTTSCCC---SSCSSTTSCS----------CCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred cceEEEEeCC---CceEeecCCC----------CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 5555555543 2222221111 4699999999999999999999999999544 666667 665
Q ss_pred -CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------EEEEEe-----CCCCeEEEEEeCCCCeEEEEeeCCCcEEE
Q psy2110 238 -PVCSISWSRNGYKIISASTDNNVCIWDVLTGE-------CEQKYR-----FPSPILKVQFHPRNDHMFLVCPMRHAAVL 304 (622)
Q Consensus 238 -~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~i~~ 304 (622)
.+.+++|||||++|++|+.||+|++||+.++. .+..+. |...|.+++|+|++ +++++.|+.+++
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrl 206 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFS 206 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEE
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEE
Confidence 49999999999999999999999999999885 356653 45699999999998 678888999999
Q ss_pred EEecCCcee---ecc-cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEE--cCCCCEEE
Q psy2110 305 VDTDGDHQI---VPI-DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEF--ARRGNCLL 378 (622)
Q Consensus 305 ~d~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~ 378 (622)
|++.+.... ..+ ..|...|.+++|+ |+.+++++ ++.|++||+.+++......+|...|.+++| +|++..|+
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La 283 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILL 283 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEE
T ss_pred EECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEE
Confidence 999876632 344 4677899999999 68999887 699999999988774444489999999999 99999999
Q ss_pred EEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCC
Q psy2110 379 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK 458 (622)
Q Consensus 379 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 458 (622)
+++.||+ ++|..+. ++|+||+..+++. |+++++|+...+. +..+.+ .
T Consensus 284 ~a~edG~-klw~~d~---------------------------~~~spd~~l~a~~---d~~v~lW~~~g~~-l~~~~~-~ 330 (588)
T 2j04_A 284 MSNKTSY-KVLLEDE---------------------------LHVTADNIIAPYL---EKKFKKWSTIWNE-FNNYET-T 330 (588)
T ss_dssp ECSSCEE-EEEESSS---------------------------EEEECCCSSHHHH---HHHHHHTTTTTTS-SSSSCC-E
T ss_pred EEcCCCC-EEEeecc---------------------------EEECCCceEEEEc---CCEEEEEECCCCc-eeeecc-c
Confidence 9999999 9998761 4799999988774 7789999976544 444444 3
Q ss_pred CCceeEEEECCCCCEEEEEe
Q psy2110 459 GELLLDVVWHPVRPIIASIS 478 (622)
Q Consensus 459 ~~~v~~v~~sp~~~~l~s~~ 478 (622)
. .|.+++|+|+|+++|+++
T Consensus 331 ~-~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 331 L-VIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp E-EEEEEEECTTSSEEEEEE
T ss_pred e-EEEEEEECCCCCEEEEEE
Confidence 3 399999999999999987
No 67
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.5e-37 Score=309.61 Aligned_cols=292 Identities=12% Similarity=0.176 Sum_probs=250.2
Q ss_pred eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcc------cccccccccCCCccc
Q psy2110 116 LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG------IAKIISAHMHPEFDG 189 (622)
Q Consensus 116 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~------~~~~~~~~~~~~~~~ 189 (622)
....+.+|.+.| ++++|+| ++|++|+.||.|++|++.+++ ....+..|.
T Consensus 8 ~~~~~~~h~~~i-----------------~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~------ 62 (397)
T 1sq9_A 8 TANAGKAHDADI-----------------FSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK------ 62 (397)
T ss_dssp EEEESSCSSSCE-----------------EEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT------
T ss_pred hhhhhhhhhcCe-----------------EEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC------
Confidence 345677898888 5999998 799999999999999999887 455555443
Q ss_pred ccccccceEEEEECCC----C---CEEEEEeCCCeEEEEEcCCCce-----EEEeccC-----CcCeeEEEEc----CCC
Q psy2110 190 ALDCISLAVTCAFNKR----G---TLLAVGCNDGRIVLWDFLTRGI-----AKIISAH-----MHPVCSISWS----RNG 248 (622)
Q Consensus 190 ~~~~~~~v~~~~~s~~----g---~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~s----~~~ 248 (622)
..|.+++|+|+ + ++|++++.|+.|++|++.+++. ...+..| ...|.+++|+ |++
T Consensus 63 -----~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (397)
T 1sq9_A 63 -----SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 137 (397)
T ss_dssp -----TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred -----CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence 35899999999 9 9999999999999999998887 8888888 5899999999 999
Q ss_pred CE-EEEEeCCCcEEEEECCC------CcEEE-----EEe--------CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110 249 YK-IISASTDNNVCIWDVLT------GECEQ-----KYR--------FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD 308 (622)
Q Consensus 249 ~~-l~s~~~d~~i~iwd~~~------~~~~~-----~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 308 (622)
++ |++++.||.|++||+.+ ++.+. .+. +...+.+++|+|++ ++++++.++.+++||++
T Consensus 138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 138 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELS 215 (397)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETT
T ss_pred ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECC
Confidence 99 99999999999999988 55544 442 67889999999998 78899999999999999
Q ss_pred CCceeecccC---C---CCceEEEEEeeCCCEEEEEecC---CeEEEEeCCCccEEEEEec-------------CCCCEE
Q psy2110 309 GDHQIVPIDE---D---SDLSIVASFDRRGQHVVTGNSK---GKVLVLSCPALELKASFKA-------------STTAIK 366 (622)
Q Consensus 309 ~~~~~~~~~~---~---~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~-------------~~~~i~ 366 (622)
+...+..+.. | ...+.+++|+|++++|++++.+ |.|++||+++++.+..+.. |...|.
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 295 (397)
T 1sq9_A 216 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295 (397)
T ss_dssp TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEE
Confidence 9988888888 8 8999999999999999999999 9999999999999999998 999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeee------cc-------------ccceeeeeEEEcCCC
Q psy2110 367 SIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQ------DL-------------VNKTMWKKCCFSGDG 427 (622)
Q Consensus 367 ~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~------~~-------------~~~~~~~~~~~spdg 427 (622)
+++|+|++++|++++.|+.|++||+.. ...+..+. .+ .+...+.+++|+|+|
T Consensus 296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 296 SLSFNDSGETLCSAGWDGKLRFWDVKT---------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTT---------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCC---------CceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 999999999999999999999999983 34445554 22 014667899999999
Q ss_pred ----------CeEEEeeCCCCeEEEEECCCCe
Q psy2110 428 ----------EYVCAGSARQHALYIWEKSVGN 449 (622)
Q Consensus 428 ----------~~l~~~~~~d~~i~iwd~~~~~ 449 (622)
++|++++. |+.|++|++.+|+
T Consensus 367 ~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 367 WRSGMGADLNESLCCVCL-DRSIRWFREAGGK 397 (397)
T ss_dssp TSBSTTCTTSCEEEEEET-TTEEEEEEEEC--
T ss_pred ccccccccccceEEEecC-CCcEEEEEcCCCC
Confidence 79999997 9999999998764
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-36 Score=303.60 Aligned_cols=285 Identities=14% Similarity=0.149 Sum_probs=245.4
Q ss_pred cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc--eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN--LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 157 (622)
+...+.+++|+|++++|++++.+ +.|++||+.+++ .+..+.+|...+ ++++|+|++++|+
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~l~ 68 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQV-----------------TGVDWAPDSNRIV 68 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSS-SEEEEEEEETTEEEEEEEEECCSSCE-----------------EEEEEETTTTEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCC-CEEEEEeCCCCcEEeeeeecCCCCcc-----------------cEEEEeCCCCEEE
Confidence 44567899999999999999875 999999999987 889999999988 5999999999999
Q ss_pred EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce----EEEec
Q psy2110 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI----AKIIS 233 (622)
Q Consensus 158 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~----~~~~~ 233 (622)
+++.||.|++||+.+++....+...... ..|.+++|+|++++|++++.++.|++|++..+.. .....
T Consensus 69 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 139 (372)
T 1k8k_C 69 TCGTDRNAYVWTLKGRTWKPTLVILRIN---------RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 139 (372)
T ss_dssp EEETTSCEEEEEEETTEEEEEEECCCCS---------SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred EEcCCCeEEEEECCCCeeeeeEEeecCC---------CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec
Confidence 9999999999999887644443221111 3589999999999999999999999999998762 33346
Q ss_pred cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEEC------------------CCCcEEEEEe-CCCCeEEEEEeCCCCeEEE
Q psy2110 234 AHMHPVCSISWSRNGYKIISASTDNNVCIWDV------------------LTGECEQKYR-FPSPILKVQFHPRNDHMFL 294 (622)
Q Consensus 234 ~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~------------------~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 294 (622)
.|...|.+++|+|++++|++++.|+.|++||+ ..++.+..+. +...+.+++|+|++. +++
T Consensus 140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 218 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVA 218 (372)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEE
T ss_pred ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEE
Confidence 78999999999999999999999999999995 4677787775 778999999999887 678
Q ss_pred EeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC--ccE------------------
Q psy2110 295 VCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA--LEL------------------ 354 (622)
Q Consensus 295 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~------------------ 354 (622)
+++.++.+++||+++...+..+..|...+.+++|+|++++++++ .|+.|++|++.+ ++.
T Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 297 (372)
T ss_dssp EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred EEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcc
Confidence 88899999999999999999999999999999999999988887 899999999987 421
Q ss_pred --------------E------EEE-ecCCCCEEEEEEc-CCC---CEEEEEeCCCcEEEEeccc
Q psy2110 355 --------------K------ASF-KASTTAIKSIEFA-RRG---NCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 355 --------------~------~~~-~~~~~~i~~~~~s-~~~---~~l~~~~~d~~i~i~d~~~ 393 (622)
. ..+ .+|...|++++|. ++| ++|++++.||.|++|++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 298 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp HHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred hhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0 223 3899999999966 676 9999999999999999974
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=302.81 Aligned_cols=285 Identities=11% Similarity=0.174 Sum_probs=241.6
Q ss_pred cccceeEEEEcCCCCEEEE-ecC--CCCeEEEEEcCCCceEEEE-eccCcceeEEEEeecCccccccceeEEEEcCC---
Q psy2110 80 NKTMWKKCCFSGDGEYVCA-GSA--RQHALYIWEKSVGNLVKIL-HGTKGELLLDVVEFDGALDCISLAVTCAFNKR--- 152 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~-~~~--~~~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d--- 152 (622)
+...+.+++|+|++..+++ ++. .++.|++||+.+++..... .+|...+ ++++|+|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~ 79 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPI-----------------KCGTFGATSLQ 79 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCE-----------------EEEECTTCCTT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcE-----------------EEEEEcCCCCC
Confidence 4567889999999976655 543 1599999999998876554 3677777 59999999
Q ss_pred CCEEEEeeCCCcEEEEecCCcc-cccccccccCCCcccccccccceEEE------EECCCCCEEEEEeCCCeEEEEEcCC
Q psy2110 153 GTLLAVGCNDGRIVLWDFLTRG-IAKIISAHMHPEFDGALDCISLAVTC------AFNKRGTLLAVGCNDGRIVLWDFLT 225 (622)
Q Consensus 153 ~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~------~~s~~g~~l~~~~~dg~i~iwd~~~ 225 (622)
+.+|++++.||.|++|++.+++ ....+..|. ..|.++ +|+|++++|++++.|+.|++||+.+
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~ 148 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHK-----------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ 148 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCCS-----------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEecc-----------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC
Confidence 6999999999999999999887 666666554 347777 4578999999999999999999998
Q ss_pred Cc-eEEEeccCCc----CeeEEE----EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeC---CCCeEE
Q psy2110 226 RG-IAKIISAHMH----PVCSIS----WSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHP---RNDHMF 293 (622)
Q Consensus 226 ~~-~~~~~~~~~~----~v~~~~----~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~ 293 (622)
++ ....+..|.+ .+.+++ |++++++|++++.|+.|++||+++++......+...+.+++|+| ++. ++
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l 227 (357)
T 3i2n_A 149 KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMN-KL 227 (357)
T ss_dssp CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCC-EE
T ss_pred CCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCC-EE
Confidence 87 6777766554 889998 78899999999999999999999999988888999999999999 665 67
Q ss_pred EEeeCCCcEEEEEecCCceeeccc-----CCCCceEEEEEeeCCC-EEEEEecCCeEEEEeCCCc---------------
Q psy2110 294 LVCPMRHAAVLVDTDGDHQIVPID-----EDSDLSIVASFDRRGQ-HVVTGNSKGKVLVLSCPAL--------------- 352 (622)
Q Consensus 294 ~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~--------------- 352 (622)
++++.++.+++||+++......+. .|...+.+++|+|+++ ++++++.||.|++||++++
T Consensus 228 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~ 307 (357)
T 3i2n_A 228 VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV 307 (357)
T ss_dssp EEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred EEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence 888999999999998765554443 8899999999999998 8999999999999998753
Q ss_pred ----cEEEEEecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeccc
Q psy2110 353 ----ELKASFKASTTAIKSIEFARRGNCLL-VNTGDRLIRVYNHQE 393 (622)
Q Consensus 353 ----~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~d~~i~i~d~~~ 393 (622)
+++..+..|...|++++|+|++++|+ +++.|+.|++|++..
T Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 308 AGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred ccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 46778889999999999999999998 799999999999973
No 70
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-38 Score=317.56 Aligned_cols=317 Identities=10% Similarity=0.042 Sum_probs=244.1
Q ss_pred CCcceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhcc
Q psy2110 1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN 80 (622)
Q Consensus 1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (622)
+++|.+++|||||+++||++.|++|+ |....+ .+ -.+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---------------------------------------~l--~gh 51 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---------------------------------------DI--NCN 51 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---------------------------------------CC--SSB
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc---------------------------------------ee--cCC
Confidence 47899999999999999999999998 522111 00 024
Q ss_pred ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEe-ccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110 81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH-GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG 159 (622)
Q Consensus 81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 159 (622)
...+.+++|+|+| . ++.+.+|+.+.. ..+. .|...| ++++|||+|++||++
T Consensus 52 ~~~v~~V~FsPdg-------~-~~~~~~~~~~~~---~~~~~~~~~~V-----------------~~vawSPdG~~LAs~ 103 (588)
T 2j04_A 52 SKNLFHVKEFPLE-------F-ENKLDFELAQQN---GLLNSQPVCYP-----------------RVCKPSPIDDWMAVL 103 (588)
T ss_dssp GGGTEEEEEECCC-------C-CCTTTTSCCCSS---CSSTTSCSCCE-----------------EEEEECSSSSCEEEE
T ss_pred CccEEEEEECCCC-------C-cceEEEEeCCCc---eEeecCCCCcE-----------------EEEEECCCCCEEEEE
Confidence 4566789999999 2 355556654322 2222 445555 699999999999999
Q ss_pred eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce-------EEEe
Q psy2110 160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI-------AKII 232 (622)
Q Consensus 160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~-------~~~~ 232 (622)
+.||.|++|+... ++..+. +...... ..+.+++|||||++||+|+.||+|++|++.++.. +..+
T Consensus 104 s~dg~V~iwd~~~--~l~~l~-~~~~~~~------~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti 174 (588)
T 2j04_A 104 SNNGNVSVFKDNK--MLTNLD-SKGNLSS------RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSI 174 (588)
T ss_dssp ETTSCEEEEETTE--EEEECC-CSSCSTT------TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEE
T ss_pred eCCCcEEEEeCCc--eeeecc-CCCcccc------ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeee
Confidence 9999999999544 444444 3211000 2488999999999999999999999999998753 5666
Q ss_pred ----ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---EEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110 233 ----SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC---EQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAV 303 (622)
Q Consensus 233 ----~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~ 303 (622)
.+|...|.+++|+||| +++++.|++|++||+.+++. .+.+. |...|.+++|+ +. .+++++ ++.|+
T Consensus 175 ~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIk 248 (588)
T 2j04_A 175 RLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVH 248 (588)
T ss_dssp ECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEE
T ss_pred ecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEE
Confidence 6788899999999999 88899999999999988773 34553 56789999999 44 555555 58999
Q ss_pred EEEecCCceeecccCCCCceEEEEE--eeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q psy2110 304 LVDTDGDHQIVPIDEDSDLSIVASF--DRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT 381 (622)
Q Consensus 304 ~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 381 (622)
+||+.+........+|...+..+++ +|++..++++.++|+ ++|... .++++|++..+++.
T Consensus 249 LWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~- 310 (588)
T 2j04_A 249 KIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYL- 310 (588)
T ss_dssp EEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------SEEEECCCSSHHHH-
T ss_pred EEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------cEEECCCceEEEEc-
Confidence 9999988774444479999999999 999999999999999 999977 26699999877774
Q ss_pred CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC
Q psy2110 382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA 435 (622)
Q Consensus 382 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 435 (622)
|+++++|+... ..+..+ .....+.+++|||||+.+|+++.
T Consensus 311 -d~~v~lW~~~g----------~~l~~~---~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 311 -EKKFKKWSTIW----------NEFNNY---ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -HHHHHHTTTTT----------TSSSSS---CCEEEEEEEEECTTSSEEEEEEE
T ss_pred -CCEEEEEECCC----------Cceeee---ccceEEEEEEECCCCCEEEEEEe
Confidence 99999998752 122222 23455778999999999998875
No 71
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-35 Score=305.97 Aligned_cols=308 Identities=16% Similarity=0.305 Sum_probs=259.6
Q ss_pred EEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEE
Q psy2110 88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVL 167 (622)
Q Consensus 88 ~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 167 (622)
++++++++|++|+.| |.|++||+.+++.+..+.+|.+.| ++++|+|++ +|++|+.||+|++
T Consensus 127 ~~~~~~~~l~sgs~d-g~i~vwd~~~~~~~~~~~~h~~~V-----------------~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 127 CLQFEDNYVITGADD-KMIRVYDSINKKFLLQLSGHDGGV-----------------WALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp EEEEETTEEEEEETT-SCEEEEETTTTEEEEEECCCSSCE-----------------EEEEECSTT-EEEEEETTSCEEE
T ss_pred EEEECCCEEEEEcCC-CcEEEEECCCCcEEEEEeCCCcCE-----------------EEEEEcCCC-EEEEEeCCCCEEE
Confidence 344467899999975 999999999999999999999998 599999988 9999999999999
Q ss_pred EecCCcccccccccccCCCcccccccccceEEEEEC--CCCCEEEEEeCCCeEEEEEcCCCce-----------------
Q psy2110 168 WDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFN--KRGTLLAVGCNDGRIVLWDFLTRGI----------------- 228 (622)
Q Consensus 168 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~dg~i~iwd~~~~~~----------------- 228 (622)
||+.+++....+..|. ..|.+++|+ +++++|++++.|+.|++||+.++..
T Consensus 188 wd~~~~~~~~~~~~h~-----------~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHN-----------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256 (464)
T ss_dssp EETTTTEEEEEECCCS-----------SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCG
T ss_pred EECCCCcEEEEECCCC-----------CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeecc
Confidence 9999998888777665 358888888 6789999999999999999987652
Q ss_pred ------EEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCc
Q psy2110 229 ------AKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHA 301 (622)
Q Consensus 229 ------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~ 301 (622)
...+.+|...+.++ ++++++|++++.|+.|++||+.+++++..+. +...+.+++|+|++. .+++++.|+.
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~ 333 (464)
T 3v7d_B 257 EENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTT 333 (464)
T ss_dssp GGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSC
T ss_pred CCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCc
Confidence 45677888888887 5678999999999999999999999998887 788999999999887 5788999999
Q ss_pred EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q psy2110 302 AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT 381 (622)
Q Consensus 302 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 381 (622)
+++||++++..+..+..|...+.+++++ ++++++++.||.|++||+.+++...... +...+..++|++++++|++++
T Consensus 334 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 334 IRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec
Confidence 9999999999999999999999999987 6899999999999999999888766554 566788899999999999988
Q ss_pred CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEE
Q psy2110 382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWE 444 (622)
Q Consensus 382 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd 444 (622)
|+.|++||+.. .+.+..+. ......+.+++|+ ++.+++++.+++.+.+|-
T Consensus 411 -dg~i~iwd~~~---------g~~~~~~~-~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 411 -ENQFNIYNLRS---------GKLVHANI-LKDADQIWSVNFK--GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp -TTEEEEEETTT---------CCEEESCT-TTTCSEEEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred -CCeEEEEECCC---------CcEEehhh-ccCCCcEEEEEec--CCEEEEEEEeCCeEEEEE
Confidence 89999999983 33333311 1234567788997 556655554477665553
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-36 Score=303.40 Aligned_cols=296 Identities=15% Similarity=0.246 Sum_probs=247.5
Q ss_pred EEeccCcceeEEEEeecCccccccceeEEEEcCC----CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccc
Q psy2110 119 ILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR----GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI 194 (622)
Q Consensus 119 ~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (622)
...+|...| ++++|+|+ ...+++++.++.|++|++.+++.+..+..+..... .
T Consensus 13 ~~~~h~~~v-----------------~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~------~ 69 (366)
T 3k26_A 13 LKEDHNQPL-----------------FGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADA------D 69 (366)
T ss_dssp EECTTCSCE-----------------EEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCT------T
T ss_pred eecCCCCce-----------------EEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCC------C
Confidence 345788887 59999984 45666777778999999998877776665443211 1
Q ss_pred cceEEEEECCC----CCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCc
Q psy2110 195 SLAVTCAFNKR----GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGE 269 (622)
Q Consensus 195 ~~v~~~~~s~~----g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~ 269 (622)
..|.+++|+|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 149 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence 35899999999 67999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EEEEE----eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc----------------------------
Q psy2110 270 CEQKY----RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID---------------------------- 317 (622)
Q Consensus 270 ~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---------------------------- 317 (622)
....+ .+...|.+++|+|++. ++++++.++.+++||+++......+.
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 150 LVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp EEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred EEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 99887 3788999999999887 67888899999999998765443333
Q ss_pred CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc--------------EEEEEecCCCCEEEEEEcCC--CCEEEEEe
Q psy2110 318 EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE--------------LKASFKASTTAIKSIEFARR--GNCLLVNT 381 (622)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~i~~~~~s~~--~~~l~~~~ 381 (622)
.|...+.+++|+ ++++++++.||.|++||+.+++ .+..+..|...|++++|+|+ +++|++++
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 306 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN 306 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence 288889999998 7899999999999999998764 37888899999999999999 99999999
Q ss_pred CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110 382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS 446 (622)
Q Consensus 382 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~ 446 (622)
.||.|++||+...... ......+..+.....+.+++|+|++++|++++. ||.|++||+.
T Consensus 307 ~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~ 365 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPH-----KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD-DASIWRWDRL 365 (366)
T ss_dssp TTSCEEEEECCSSSGG-----GCEEEEECCTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEEC-
T ss_pred cCCcEEEEECCCCCCc-----cccceEEcccccCCceEEEEeCCCCCeEEEEeC-CCEEEEEEec
Confidence 9999999999831110 012234554444577889999999999999997 9999999975
No 73
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.8e-36 Score=300.64 Aligned_cols=289 Identities=10% Similarity=0.105 Sum_probs=219.7
Q ss_pred cceeEEEEcCCCCEEEEecCC------CCeEEEEEcCCCceE----------EEEeccCcceeEEEEeecCcccccccee
Q psy2110 82 TMWKKCCFSGDGEYVCAGSAR------QHALYIWEKSVGNLV----------KILHGTKGELLLDVVEFDGALDCISLAV 145 (622)
Q Consensus 82 ~~~~~~~~sp~~~~l~~~~~~------~~~i~vwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 145 (622)
.++++++|+||+++|++|+.+ ++.|++|++..+... ..+.+|...+ +
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v-----------------~ 77 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSP-----------------T 77 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCC-----------------C
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCce-----------------E
Confidence 457899999999999998743 236999998755321 2345566555 3
Q ss_pred EEEEcCCCCEEEE-----------eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-
Q psy2110 146 TCAFNKRGTLLAV-----------GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC- 213 (622)
Q Consensus 146 ~~~~s~d~~~l~s-----------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~- 213 (622)
+++++ +..+++ ++.|+++++|++............... .........+.+++|+|||++|++++
T Consensus 78 s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~fSpDg~~la~as~ 153 (365)
T 4h5i_A 78 AIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDF--DASTNADDYTKLVYISREGTVAAIASS 153 (365)
T ss_dssp EEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECS--SCCCCTTCCEEEEEECTTSSCEEEEES
T ss_pred EEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeece--eecCCcccCEEEEEEcCCCCEEEEEEC
Confidence 55544 445554 456788999998765332211111000 00111113578899999999987654
Q ss_pred -CCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCeEEEEEeCCC
Q psy2110 214 -NDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR---FPSPILKVQFHPRN 289 (622)
Q Consensus 214 -~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~ 289 (622)
.|+.|++||+.+++++..+. |.+.|.+++|+|||++|++++. +.+++|+..+++...... +...+.+++|+|++
T Consensus 154 ~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 154 KVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADD 231 (365)
T ss_dssp CSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT
T ss_pred CCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC
Confidence 68999999999999988886 7788999999999999999985 567777777777665433 56779999999999
Q ss_pred CeEEEEeeCCC---cEEEEEecCCce----eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEE-ecC
Q psy2110 290 DHMFLVCPMRH---AAVLVDTDGDHQ----IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF-KAS 361 (622)
Q Consensus 290 ~~~~~~~~~~~---~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~ 361 (622)
..++.++...+ .+++|++..... ...+..|...|.+++|+|+|++|++|+.|+.|+|||+++++++..+ .+|
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH 311 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH 311 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence 86544443332 578888876543 3456788899999999999999999999999999999999999886 689
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110 362 TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 362 ~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 393 (622)
...|++++|+|||++||+++.|++|+||++..
T Consensus 312 ~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 312 SFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999999999999999999974
No 74
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-35 Score=287.53 Aligned_cols=291 Identities=14% Similarity=0.228 Sum_probs=247.3
Q ss_pred CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccc
Q psy2110 114 GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDC 193 (622)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (622)
.+....+.+|.+.| ++++| |++++|++++.||.|++||+.++.....+..+.
T Consensus 8 ~~~~~~l~~h~~~v-----------------~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~---------- 59 (313)
T 3odt_A 8 YQLSATLKGHDQDV-----------------RDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ---------- 59 (313)
T ss_dssp CEEEEEECCCSSCE-----------------EEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECS----------
T ss_pred HHHHHHhhCCCCCc-----------------EEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCC----------
Confidence 36778899999998 59999 999999999999999999998887777776654
Q ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q psy2110 194 ISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR---GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC 270 (622)
Q Consensus 194 ~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 270 (622)
..|.+++|+|++++|++++.++.|++|++... +....+.+|...|.+++| ++++|++++.|+.|++|| .++.
T Consensus 60 -~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~ 134 (313)
T 3odt_A 60 -GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSL 134 (313)
T ss_dssp -SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEE
T ss_pred -ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcE
Confidence 35899999999999999999999999998754 567788899999999999 678999999999999999 5666
Q ss_pred EEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC-CCCceEEEEEeeCCCEEEEEecCCeEEEEe
Q psy2110 271 EQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE-DSDLSIVASFDRRGQHVVTGNSKGKVLVLS 348 (622)
Q Consensus 271 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 348 (622)
...+. +...+.+++|+|....++++++.++.+++|| .......+.. +...+.+++|+|++. +++++.+|.|++||
T Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d 211 (313)
T 3odt_A 135 VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVD 211 (313)
T ss_dssp EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEE
T ss_pred EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEE
Confidence 66666 7889999999995555788999999999999 4445555555 888999999999998 99999999999999
Q ss_pred CCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC
Q psy2110 349 CPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE 428 (622)
Q Consensus 349 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 428 (622)
+++++++..+..|...|++++|+|++ .|++++.|+.|++||+. ....+..+..+ ...+.+++|+|+++
T Consensus 212 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~---------~~~~~~~~~~~--~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 212 MHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKE---------NGSLKQVITLP--AISIWSVDCMSNGD 279 (313)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTT---------TCCEEEEEECS--SSCEEEEEECTTSC
T ss_pred CCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECC---------CCceeEEEecc--CceEEEEEEccCCC
Confidence 99999999999999999999999999 58999999999999998 33455555443 34678899999999
Q ss_pred eEEEeeCCCCeEEEEECCCCeeEEEE
Q psy2110 429 YVCAGSARQHALYIWEKSVGNLVKIL 454 (622)
Q Consensus 429 ~l~~~~~~d~~i~iwd~~~~~~~~~~ 454 (622)
++ +++. |+.|++|++.+++.+...
T Consensus 280 ~~-~~~~-dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 280 II-VGSS-DNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EE-EEET-TSCEEEEESCGGGCCC--
T ss_pred EE-EEeC-CCcEEEEeCCCCceeehh
Confidence 54 5665 899999999987765443
No 75
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.9e-36 Score=301.94 Aligned_cols=286 Identities=19% Similarity=0.209 Sum_probs=241.8
Q ss_pred cccceeEEEEcCC----CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC---
Q psy2110 80 NKTMWKKCCFSGD----GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR--- 152 (622)
Q Consensus 80 ~~~~~~~~~~sp~----~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d--- 152 (622)
+...+.+++|+|+ ...+++++.+ +.|++|++.+++.+..+..|.... ....|++++|+|+
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~-~~v~vw~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~ 83 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGS-NRVTLYECHSQGEIRLLQSYVDAD------------ADENFYTCAWTYDSNT 83 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEET-TEEEEEEECGGGCEEEEEEEECSC------------TTCCEEEEEEEECTTT
T ss_pred CCCceEEEEEecccCCCCceEEEECCC-CEEEEEEcCCCcEEEeeeeccccC------------CCCcEEEEEeccCCCC
Confidence 4567889999984 4445555544 799999999998888877654321 0112369999999
Q ss_pred -CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceEE
Q psy2110 153 -GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAK 230 (622)
Q Consensus 153 -~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~~~~~~~ 230 (622)
+.+|++|+.||.|++||+.+++.+..+..|. ..|.+++|+| ++++|++++.||.|++||+.+++...
T Consensus 84 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 84 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHG-----------NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp CCEEEEEEETTCEEEEECTTTCCEEEEEESCC-----------SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCEEEEecCCCEEEEEEchhceEeeeecCCC-----------CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEE
Confidence 6799999999999999999998888777654 3589999999 99999999999999999999999888
Q ss_pred Ee---ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----------------------------CCC
Q psy2110 231 II---SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-----------------------------FPS 278 (622)
Q Consensus 231 ~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------~~~ 278 (622)
.+ ..|...|.+++|+|++++|++++.||.|++||+++++....+. +..
T Consensus 153 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp EECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred EecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 88 7899999999999999999999999999999999775443222 778
Q ss_pred CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce--------------eecccCCCCceEEEEEeeC--CCEEEEEecCC
Q psy2110 279 PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ--------------IVPIDEDSDLSIVASFDRR--GQHVVTGNSKG 342 (622)
Q Consensus 279 ~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg 342 (622)
.|.+++|+ ++ ++++++.++.+++||+.+... +..+..|...+.+++|+|+ +++|++++.||
T Consensus 233 ~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg 309 (366)
T 3k26_A 233 YVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG 309 (366)
T ss_dssp CCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred eEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence 89999999 33 788999999999999987643 5667778888999999999 99999999999
Q ss_pred eEEEEeCCCcc----EEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 343 KVLVLSCPALE----LKASFKAS--TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 343 ~i~i~d~~~~~----~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
.|++||+.+++ ....+..| ...|++++|+|++++|++++.||.|++||+.
T Consensus 310 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 310 KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999875 45577777 7999999999999999999999999999985
No 76
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=307.90 Aligned_cols=351 Identities=16% Similarity=0.170 Sum_probs=252.7
Q ss_pred CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCcccccccccc
Q psy2110 104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISAH 182 (622)
Q Consensus 104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 182 (622)
+.+++|++..++....+.+|.+.| ++++|+| ++++|++|+.||.|++|++.++.....+...
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~~v-----------------~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 85 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGGGI-----------------NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK 85 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSSCE-----------------EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC
T ss_pred CcceeeccccCcceeeeeccCCcE-----------------EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc
Confidence 568889998899999999999998 5999999 9999999999999999999988766555321
Q ss_pred cCCC--cccccccccceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCC---CCEEEEEeC
Q psy2110 183 MHPE--FDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRN---GYKIISAST 256 (622)
Q Consensus 183 ~~~~--~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~ 256 (622)
.... ..........|.+++|+| ++++|++++.|+.|++||+.+++....+. +...+.++.|++. +.++++++.
T Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 86 AVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp EEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEES
T ss_pred ccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcC
Confidence 1000 000001124689999999 77899999999999999999998887776 6788999999984 459999999
Q ss_pred CCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc-eeecc---------------cCC
Q psy2110 257 DNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH-QIVPI---------------DED 319 (622)
Q Consensus 257 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~---------------~~~ 319 (622)
++.|++||+++++....+. +...|.+++|+|++..++++++.++.+++||++... ....+ ..|
T Consensus 165 ~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
T 4a11_B 165 GPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH 244 (408)
T ss_dssp SSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC
T ss_pred CCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccc
Confidence 9999999999999888887 888999999999999889999999999999997654 22222 567
Q ss_pred CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecC-----CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccc
Q psy2110 320 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS-----TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEV 394 (622)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 394 (622)
...+.+++|+|++++|++++.||.|++||+.+++....+..+ ...+........+..+++++.++.|++||+.
T Consensus 245 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~-- 322 (408)
T 4a11_B 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY-- 322 (408)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETT--
T ss_pred cCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECc--
Confidence 888999999999999999999999999999988765444322 1122222223345567778889999999998
Q ss_pred cccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-E
Q psy2110 395 LNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-I 473 (622)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~ 473 (622)
....+..+..+ ...+.+++|+|++++|++++. ||.|++|++.+++.+.....+.. ...+.|... .
T Consensus 323 -------~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 388 (408)
T 4a11_B 323 -------SGEQITMLKGH--YKTVDCCVFQSNFQELYSGSR-DCNILAWVPSLYEPVPDDDETTT----KSQLNPAFEDA 388 (408)
T ss_dssp -------TCCEEEEECCC--SSCEEEEEEETTTTEEEEEET-TSCEEEEEECC---------------------------
T ss_pred -------CCcceeeeccC--CCeEEEEEEcCCCCEEEEECC-CCeEEEEeCCCCCccCCCCceEe----cccccccccee
Confidence 34555555543 346788999999999999997 99999999999887766554332 234444433 3
Q ss_pred EEEEe-CCcEEEeecC
Q psy2110 474 IASIS-SGVVSLWAQN 488 (622)
Q Consensus 474 l~s~~-dg~v~iw~~~ 488 (622)
+.+++ ++.+++|+..
T Consensus 389 ~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 389 WSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------
T ss_pred ecccCccCceeecCCc
Confidence 33444 8999999875
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.6e-35 Score=297.31 Aligned_cols=279 Identities=18% Similarity=0.356 Sum_probs=240.7
Q ss_pred ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEe--ccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110 81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH--GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV 158 (622)
Q Consensus 81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 158 (622)
......++||++ +.||+|. |++|+|||+.+|++...+. +|...| ++++|+|+|++||+
T Consensus 105 d~y~~~l~wS~~-n~lAvgl--d~tV~lWd~~tg~~~~~~~~~~~~~~V-----------------~sv~fspdg~~las 164 (420)
T 4gga_A 105 DYYLNLVDWSSG-NVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYI-----------------SSVAWIKEGNYLAV 164 (420)
T ss_dssp CTTCBCEEECTT-SEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCE-----------------EEEEECTTSSEEEE
T ss_pred cccceeEEECCC-CEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCcE-----------------EEEEECCCCCEEEE
Confidence 334567999986 5787776 4899999999999888776 455666 69999999999999
Q ss_pred eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceEEEeccCCc
Q psy2110 159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR-GIAKIISAHMH 237 (622)
Q Consensus 159 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~ 237 (622)
|+.||+|++||+.+++.+..+..|.. .+.++++ ++.+|++|+.|+.+++|+.... ..+..+.+|..
T Consensus 165 gs~Dg~v~iWd~~~~~~~~~~~~h~~-----------~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~ 231 (420)
T 4gga_A 165 GTSSAEVQLWDVQQQKRLRNMTSHSA-----------RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 231 (420)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSS-----------CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred EECCCeEEEEEcCCCcEEEEEeCCCC-----------ceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEeccccc
Confidence 99999999999999988888877653 3666665 5689999999999999998864 45678899999
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE----EE-EEeCCCCeEEEEEeCCCCeEEEEe--eCCCcEEEEEecCC
Q psy2110 238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGEC----EQ-KYRFPSPILKVQFHPRNDHMFLVC--PMRHAAVLVDTDGD 310 (622)
Q Consensus 238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~-~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~ 310 (622)
.+..+.|+++++++++++.|+.+++|+..+++. +. ...+...|.+++|+|.+..+++++ +.|+.|++||+.++
T Consensus 232 ~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred ceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence 999999999999999999999999999987753 22 334788999999999988887764 57899999999998
Q ss_pred ceeecccCCCCceEEEEEeeCCCEEEEEe--cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110 311 HQIVPIDEDSDLSIVASFDRRGQHVVTGN--SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV 388 (622)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 388 (622)
.....+..+ ..+.++.|+++++.+++++ .|+.|++||+.+++++..+.+|...|++++|+|+|++|++++.|++|++
T Consensus 312 ~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvri 390 (420)
T 4gga_A 312 ACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390 (420)
T ss_dssp EEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred ccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 888777665 4577889999999988765 7899999999999999999999999999999999999999999999999
Q ss_pred Eeccc
Q psy2110 389 YNHQE 393 (622)
Q Consensus 389 ~d~~~ 393 (622)
||+.+
T Consensus 391 Wdv~~ 395 (420)
T 4gga_A 391 WRCFE 395 (420)
T ss_dssp ECCSC
T ss_pred EECCC
Confidence 99973
No 78
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.4e-36 Score=297.10 Aligned_cols=293 Identities=15% Similarity=0.247 Sum_probs=232.2
Q ss_pred EEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE-EEeeC---CCcEEEEecCCcccccccc-cccCCCcccccc
Q psy2110 118 KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL-AVGCN---DGRIVLWDFLTRGIAKIIS-AHMHPEFDGALD 192 (622)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~s~~~---dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~ 192 (622)
..+.+|...| ++++|+|++..+ ++++. ||.|++|++.+++...... .+.
T Consensus 12 ~~~~~h~~~v-----------------~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~--------- 65 (357)
T 3i2n_A 12 HIQKGFNYTV-----------------FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA--------- 65 (357)
T ss_dssp EEEEECSSCE-----------------EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES---------
T ss_pred hhccCCCCce-----------------EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeeccc---------
Confidence 4457788888 599999999655 56665 8999999999886654433 222
Q ss_pred cccceEEEEECCC---CCEEEEEeCCCeEEEEEcCCCc-eEEEeccCCcCeeEEEE------cCCCCEEEEEeCCCcEEE
Q psy2110 193 CISLAVTCAFNKR---GTLLAVGCNDGRIVLWDFLTRG-IAKIISAHMHPVCSISW------SRNGYKIISASTDNNVCI 262 (622)
Q Consensus 193 ~~~~v~~~~~s~~---g~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~------s~~~~~l~s~~~d~~i~i 262 (622)
..|.+++|+|+ +++|++++.||.|++||+.+++ .+..+.+|...|.+++| ++++++|++++.|+.|++
T Consensus 66 --~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v 143 (357)
T 3i2n_A 66 --KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV 143 (357)
T ss_dssp --SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred --CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence 35899999999 6999999999999999999888 88899999999999954 689999999999999999
Q ss_pred EECCCCc-EEEEEeC-CC----CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEE
Q psy2110 263 WDVLTGE-CEQKYRF-PS----PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVV 336 (622)
Q Consensus 263 wd~~~~~-~~~~~~~-~~----~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 336 (622)
||+.+++ ....+.. .. .+.+++|+ ++|++++++++
T Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------------------------------------~~~~~~~~~l~ 184 (357)
T 3i2n_A 144 WDPRQKDDPVANMEPVQGENKRDCWTVAFG---------------------------------------NAYNQEERVVC 184 (357)
T ss_dssp ECTTSCSSCSEEECCCTTSCCCCEEEEEEE---------------------------------------CCCC-CCCEEE
T ss_pred EeCCCCCCcceeccccCCCCCCceEEEEEE---------------------------------------eccCCCCCEEE
Confidence 9999876 4444431 11 22222221 12678999999
Q ss_pred EEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeee---
Q psy2110 337 TGNSKGKVLVLSCPALELKASFKASTTAIKSIEFAR---RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQ--- 410 (622)
Q Consensus 337 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--- 410 (622)
+++.+|.|++||+++++... ...|...|.+++|+| ++.+|++++.|+.|++||++.. .....+.
T Consensus 185 ~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~ 254 (357)
T 3i2n_A 185 AGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ---------HPTKGFASVS 254 (357)
T ss_dssp EEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE---------ETTTEEEEEE
T ss_pred EEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC---------Ccccceeeec
Confidence 99999999999999988754 467789999999999 9999999999999999999842 2222221
Q ss_pred ccccceeeeeEEEcCCCC-eEEEeeCCCCeEEEEECCCC-------------------eeEEEEecCCCCceeEEEECCC
Q psy2110 411 DLVNKTMWKKCCFSGDGE-YVCAGSARQHALYIWEKSVG-------------------NLVKILHGTKGELLLDVVWHPV 470 (622)
Q Consensus 411 ~~~~~~~~~~~~~spdg~-~l~~~~~~d~~i~iwd~~~~-------------------~~~~~~~~~~~~~v~~v~~sp~ 470 (622)
...+...+.+++|+|+++ +|++++. |+.|++||+..+ +.+..+.+|... |++++|+|+
T Consensus 255 ~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~ 332 (357)
T 3i2n_A 255 EKAHKSTVWQVRHLPQNRELFLTAGG-AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP-ISSLDWSPD 332 (357)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEET-TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC-EEEEEECSS
T ss_pred cCCCcCCEEEEEECCCCCcEEEEEeC-CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC-eeEEEEcCC
Confidence 112345678899999999 7888887 999999998753 467778888876 999999999
Q ss_pred CCEEE-EEe-CCcEEEeecCC
Q psy2110 471 RPIIA-SIS-SGVVSLWAQNQ 489 (622)
Q Consensus 471 ~~~l~-s~~-dg~v~iw~~~~ 489 (622)
+++|+ +++ ||.|++|++..
T Consensus 333 ~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 333 KRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp STTEEEEEETTSEEEEEEECC
T ss_pred CCeEEEEecCCCcEEEEECCC
Confidence 99888 788 99999999864
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-37 Score=310.28 Aligned_cols=234 Identities=14% Similarity=0.169 Sum_probs=196.7
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCc--ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTR--GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD 222 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd 222 (622)
++++|+|++++|++|+.|+.|++|++.++ +....+..|. ..|.+++|+|++++|++++.|+.|++||
T Consensus 15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~-----------~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHD-----------KIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp SCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCS-----------SCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred EEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCC-----------ceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 69999999999999999999999999987 6666666654 3589999999999999999999999999
Q ss_pred cCCCc---eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---EEEEe--CCCCeEEEEEeCCCCeEEE
Q psy2110 223 FLTRG---IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC---EQKYR--FPSPILKVQFHPRNDHMFL 294 (622)
Q Consensus 223 ~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~--~~~~v~~~~~~~~~~~~~~ 294 (622)
+.+++ ....+..|...|.+++|+|++++|++++.|+.|++||+++++. ...+. |...|.+++|+|++. +++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~ 162 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLA 162 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEE
Confidence 99877 6777889999999999999999999999999999999998873 55555 788999999999886 688
Q ss_pred EeeCCCcEEEEEecC------------------CceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE--
Q psy2110 295 VCPMRHAAVLVDTDG------------------DHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL-- 354 (622)
Q Consensus 295 ~~~~~~~i~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-- 354 (622)
+++.|+.+++||+.. ...+..+ .|...+.+++|+|++++|++++.||.|++||+.+++.
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 899999999999952 3345555 8889999999999999999999999999999999887
Q ss_pred --EEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 355 --KASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 355 --~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
+..+..|...|.+++|+|++++|++++.++.+ +|+..
T Consensus 242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 78888999999999999999999888766655 77665
No 80
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-35 Score=284.17 Aligned_cols=274 Identities=16% Similarity=0.262 Sum_probs=244.0
Q ss_pred cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG 159 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 159 (622)
+...+.+++| |++++|++++.+ |.|++||+.+++....+..|...+ .+++|+|++++|+++
T Consensus 17 h~~~v~~~~~-~~~~~l~s~~~d-g~v~vw~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~l~~~ 77 (313)
T 3odt_A 17 HDQDVRDVVA-VDDSKVASVSRD-GTVRLWSKDDQWLGTVVYTGQGFL-----------------NSVCYDSEKELLLFG 77 (313)
T ss_dssp CSSCEEEEEE-EETTEEEEEETT-SEEEEEEESSSEEEEEEEECSSCE-----------------EEEEEETTTTEEEEE
T ss_pred CCCCcEEEEe-cCCCEEEEEEcC-CcEEEEECCCCEEEEEeecCCccE-----------------EEEEECCCCCEEEEe
Confidence 3456789999 999999999975 999999999999999999999888 599999999999999
Q ss_pred eCCCcEEEEecCCcc---cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110 160 CNDGRIVLWDFLTRG---IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM 236 (622)
Q Consensus 160 ~~dg~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 236 (622)
+.||.|++|++.... ....+..|. ..|.+++| ++++|++++.|+.|++|| .++....+..|.
T Consensus 78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~-----------~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~ 142 (313)
T 3odt_A 78 GKDTMINGVPLFATSGEDPLYTLIGHQ-----------GNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHN 142 (313)
T ss_dssp ETTSCEEEEETTCCTTSCC-CEECCCS-----------SCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCS
T ss_pred cCCCeEEEEEeeecCCCCcccchhhcc-----------cCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCC
Confidence 999999999987653 333343333 35888888 678999999999999999 777888899999
Q ss_pred cCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee
Q psy2110 237 HPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI 313 (622)
Q Consensus 237 ~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 313 (622)
..+.+++|++ ++.+|++++.|+.|++|| ..+....+. +...+.+++|+|++. +++++.++.+++||+++...+
T Consensus 143 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 143 ASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVL 218 (313)
T ss_dssp SCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEE
T ss_pred CceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhh
Confidence 9999999998 999999999999999999 445555555 778999999999986 888999999999999999999
Q ss_pred ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110 314 VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 393 (622)
..+..|...+.+++|+|++ .+++++.||.|++||+.+++++..+..|...|.+++|+|+++ +++++.|+.|++|++..
T Consensus 219 ~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 219 RTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred hhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 9999999999999999999 588999999999999999999999999999999999999998 66799999999999984
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-35 Score=296.98 Aligned_cols=276 Identities=15% Similarity=0.299 Sum_probs=242.4
Q ss_pred eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEec-cCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC
Q psy2110 84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG-TKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND 162 (622)
Q Consensus 84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 162 (622)
+.+++|++ ..+++++.+ +.|++||+.+++....+.. |...+ ++++|+|++++|++|+.|
T Consensus 96 ~~~~~~s~--~~l~~~~~d-~~v~lw~~~~~~~~~~~~~~~~~~v-----------------~~v~~s~~~~~l~~~~~d 155 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALE-RNVYVWNADSGSVSALAETDESTYV-----------------ASVKWSHDGSFLSVGLGN 155 (401)
T ss_dssp CBCEEECT--TSEEEEEET-TEEEEEETTTCCEEEEEECCTTCCE-----------------EEEEECTTSSEEEEEETT
T ss_pred EEEEeecC--CCEEEEECC-CeEEEeeCCCCcEeEeeecCCCCCE-----------------EEEEECCCCCEEEEECCC
Confidence 44577775 456666654 9999999999999888776 66666 599999999999999999
Q ss_pred CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC-CCceEEEeccCCcCeeE
Q psy2110 163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL-TRGIAKIISAHMHPVCS 241 (622)
Q Consensus 163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~ 241 (622)
|.|++||+.+++....+..|. ..|.+++| ++++|++++.||.|++||+. .......+.+|...|.+
T Consensus 156 g~i~iwd~~~~~~~~~~~~~~-----------~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 222 (401)
T 4aez_A 156 GLVDIYDVESQTKLRTMAGHQ-----------ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG 222 (401)
T ss_dssp SCEEEEETTTCCEEEEECCCS-----------SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred CeEEEEECcCCeEEEEecCCC-----------CceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeE
Confidence 999999999998888777664 35889999 56799999999999999998 56678889999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEee--CCCcEEEEEecCCceeecccC
Q psy2110 242 ISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCP--MRHAAVLVDTDGDHQIVPIDE 318 (622)
Q Consensus 242 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~ 318 (622)
++|+|++++|++++.|+.|++||+++++....+. +...|.+++|+|++..++++++ .++.+++||+.+...+..+.
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~- 301 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD- 301 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-
Confidence 9999999999999999999999999999888876 7889999999999988888876 79999999999888777775
Q ss_pred CCCceEEEEEeeCCCEEEE--EecCCeEEEEeCCCccEEE--EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110 319 DSDLSIVASFDRRGQHVVT--GNSKGKVLVLSCPALELKA--SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 393 (622)
+...+.+++|+|+++++++ |+.+|.|++|++.+++... .+.+|...|.+++|+|++++|++++.|+.|++|++..
T Consensus 302 ~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 4567999999999999999 4489999999999865544 4678999999999999999999999999999999984
No 82
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.3e-36 Score=302.92 Aligned_cols=307 Identities=16% Similarity=0.169 Sum_probs=254.8
Q ss_pred CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceEEEec------
Q psy2110 161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIIS------ 233 (622)
Q Consensus 161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~------ 233 (622)
.++.+++|++..++....+..|. ..|.+++|+| ++++|++++.||.|++|++.++.....+.
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~-----------~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 89 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHG-----------GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS 89 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCS-----------SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE
T ss_pred ccCcceeeccccCcceeeeeccC-----------CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc
Confidence 34568888888877777777665 3599999999 99999999999999999999876554432
Q ss_pred -------cCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCC--eEEEEeeCCCcEE
Q psy2110 234 -------AHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRND--HMFLVCPMRHAAV 303 (622)
Q Consensus 234 -------~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~i~ 303 (622)
+|...|.+++|+| ++.+|++++.||.|++||+.+++....+.+...+.++.++|.+. .++++++.++.++
T Consensus 90 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (408)
T 4a11_B 90 IGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169 (408)
T ss_dssp ECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred ccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence 5999999999999 78899999999999999999999999999999999999999654 3789999999999
Q ss_pred EEEecCCceeecccCCCCceEEEEEeeCCC-EEEEEecCCeEEEEeCCCcc-EEEEE---------------ecCCCCEE
Q psy2110 304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQ-HVVTGNSKGKVLVLSCPALE-LKASF---------------KASTTAIK 366 (622)
Q Consensus 304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~i~ 366 (622)
+||+++...+..+..|...+.+++|+|+++ .+++++.||.|++||++++. .+..+ ..|...|.
T Consensus 170 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 170 LCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp EEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred EEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 999999988888999999999999999998 58899999999999998765 44444 56888999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc---cceeeeeEEEcCCCCeEEEeeCCCCeEEEE
Q psy2110 367 SIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV---NKTMWKKCCFSGDGEYVCAGSARQHALYIW 443 (622)
Q Consensus 367 ~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~d~~i~iw 443 (622)
+++|+|++++|++++.|+.|++||+...... ..+.... .............+..+++++. ++.|++|
T Consensus 250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~ 319 (408)
T 4a11_B 250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENT---------LVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY-GSTIAVY 319 (408)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCBC---------CCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE-TTEEEEE
T ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCccc---------eeccccccccccccceeEEecCCCceEEEEec-CCEEEEE
Confidence 9999999999999999999999999843221 1111110 0111111222334455556665 8899999
Q ss_pred ECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110 444 EKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ 489 (622)
Q Consensus 444 d~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~ 489 (622)
|+.+++++..+.+|.+. |++++|+|++++|++++ ||.|++|++..
T Consensus 320 d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 320 TVYSGEQITMLKGHYKT-VDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp ETTTCCEEEEECCCSSC-EEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred ECcCCcceeeeccCCCe-EEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 99999999999999877 99999999999999999 99999999964
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-37 Score=309.38 Aligned_cols=280 Identities=10% Similarity=0.137 Sum_probs=225.3
Q ss_pred ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC--ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110 81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG--NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV 158 (622)
Q Consensus 81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 158 (622)
...+.+++|+|++++|++++.+ +.|++||+.++ +.+..+.+|...| ++++|+|++++|++
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~h~~~v-----------------~~~~~s~~~~~l~s 72 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTAT-NQVELYEQDGNGWKHARTFSDHDKIV-----------------TCVDWAPKSNRIVT 72 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSS-SCBCEEEEETTEEEECCCBCCCSSCE-----------------EEEEECTTTCCEEE
T ss_pred CCcEEEEEECCCCCEEEEecCC-CEEEEEEccCCceEEEEEEecCCceE-----------------EEEEEeCCCCEEEE
Confidence 3467899999999999999875 99999999988 7888899999988 59999999999999
Q ss_pred eeCCCcEEEEecCCcc---cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eEEEe
Q psy2110 159 GCNDGRIVLWDFLTRG---IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---IAKII 232 (622)
Q Consensus 159 ~~~dg~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---~~~~~ 232 (622)
++.|++|++||+.++. ....+..|. ..|.+++|+|++++|++++.|+.|++||+.+++ ....+
T Consensus 73 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 141 (377)
T 3dwl_C 73 CSQDRNAYVYEKRPDGTWKQTLVLLRLN-----------RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL 141 (377)
T ss_dssp EETTSSEEEC------CCCCEEECCCCS-----------SCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEE
T ss_pred EeCCCeEEEEEcCCCCceeeeeEecccC-----------CceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEe
Confidence 9999999999999876 333333333 358999999999999999999999999999877 46777
Q ss_pred cc-CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC------------------CCcEEEEEeCCCCeEEEEEeCCCCeEE
Q psy2110 233 SA-HMHPVCSISWSRNGYKIISASTDNNVCIWDVL------------------TGECEQKYRFPSPILKVQFHPRNDHMF 293 (622)
Q Consensus 233 ~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~ 293 (622)
.. |...|.+++|+|++++|++++.|+.|++||+. .++++..+.|...|.+++|+|+++ ++
T Consensus 142 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l 220 (377)
T 3dwl_C 142 KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGN-AL 220 (377)
T ss_dssp CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSS-CE
T ss_pred ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCC-EE
Confidence 77 99999999999999999999999999999985 244555556788999999999987 67
Q ss_pred EEeeCCCcEEEEEecCCce----eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc----------------
Q psy2110 294 LVCPMRHAAVLVDTDGDHQ----IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE---------------- 353 (622)
Q Consensus 294 ~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------- 353 (622)
++++.|+.+++||+.+... +..+..|...+.+++|+|++++|++++.++.+ +|+.....
T Consensus 221 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 299 (377)
T 3dwl_C 221 AYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSF 299 (377)
T ss_dssp EEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCB
T ss_pred EEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccc
Confidence 8889999999999998877 78888999999999999999999999877755 66654111
Q ss_pred --------------EE------EEEe----------------cCCCCEEEEEEcCCC-C---EEEEEeCCCcEEEEec
Q psy2110 354 --------------LK------ASFK----------------ASTTAIKSIEFARRG-N---CLLVNTGDRLIRVYNH 391 (622)
Q Consensus 354 --------------~~------~~~~----------------~~~~~i~~~~~s~~~-~---~l~~~~~d~~i~i~d~ 391 (622)
.. ..+. .|...|+++++.+.. . .|++++.||.|++||+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 300 THTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00 1111 288999999976543 3 6999999999999985
No 84
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-35 Score=296.41 Aligned_cols=280 Identities=14% Similarity=0.189 Sum_probs=240.3
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q psy2110 195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQ 272 (622)
Q Consensus 195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 272 (622)
..|.+++|+|++++|++++.++.|++|++.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 88 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence 358999999999999999999999999999987 888899999999999999999999999999999999999888655
Q ss_pred EEe---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce----eecccCCCCceEEEEEeeCCCEEEEEecCCeEE
Q psy2110 273 KYR---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ----IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVL 345 (622)
Q Consensus 273 ~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 345 (622)
.+. +...+.+++|+|++. ++++++.++.+++||+..... ......|...+.+++|+|+++++++++.||.|+
T Consensus 89 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 167 (372)
T 1k8k_C 89 TLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 167 (372)
T ss_dssp EEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence 543 778999999999986 678888999999999987652 333456788999999999999999999999999
Q ss_pred EEeC------------------CCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcce
Q psy2110 346 VLSC------------------PALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ 407 (622)
Q Consensus 346 i~d~------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 407 (622)
+||+ ..++++..+..|...|.+++|+|++++|++++.|+.|++||+.. ...+.
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~ 238 (372)
T 1k8k_C 168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK---------KMAVA 238 (372)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG---------TTEEE
T ss_pred EEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC---------CceeE
Confidence 9995 46788999999999999999999999999999999999999983 34555
Q ss_pred eeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC--Cee--------------------------------E--
Q psy2110 408 KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV--GNL--------------------------------V-- 451 (622)
Q Consensus 408 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~--~~~--------------------------------~-- 451 (622)
.+..+ ...+.+++|+|++++|+++ . ++.|++|++.+ ++. .
T Consensus 239 ~~~~~--~~~v~~~~~~~~~~~l~~~-~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (372)
T 1k8k_C 239 TLASE--TLPLLAVTFITESSLVAAG-H-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS 314 (372)
T ss_dssp EEECS--SCCEEEEEEEETTEEEEEE-T-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-----
T ss_pred EEccC--CCCeEEEEEecCCCEEEEE-e-CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccC
Confidence 55433 3467889999999999888 4 88999999987 431 0
Q ss_pred ----EEE-ecCCCCceeEEEEC-CCC---CEEEEEe-CCcEEEeecCC
Q psy2110 452 ----KIL-HGTKGELLLDVVWH-PVR---PIIASIS-SGVVSLWAQNQ 489 (622)
Q Consensus 452 ----~~~-~~~~~~~v~~v~~s-p~~---~~l~s~~-dg~v~iw~~~~ 489 (622)
..+ .+|.+. |++++|+ +++ .+|++++ ||.|++|++..
T Consensus 315 ~~~~~~~~~~h~~~-v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 315 AAAGAGLDSLHKNS-VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp ----CCCSSSSSSC-EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccccccccccCC-cceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 223 377765 9999977 666 8999999 99999999854
No 85
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=283.14 Aligned_cols=276 Identities=17% Similarity=0.351 Sum_probs=235.1
Q ss_pred eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEe--ccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110 84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH--GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN 161 (622)
Q Consensus 84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 161 (622)
..+++||+++ +||+|. |++|+|||+.++++++.+. +|...| ++++|+|++++|++|+.
T Consensus 28 ~~~l~WS~~~-~lAvg~--D~tV~iWd~~tg~~~~~~~~~~~~~~V-----------------~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYI-----------------SSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS-EEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCE-----------------EEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC-EEEEEe--CCEEEEEECCCCCEEEEEEecCCCCeE-----------------EEEEECCCCCEEEEEEC
Confidence 4579999986 777775 4899999999999988776 455566 69999999999999999
Q ss_pred CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceEEEeccCCcCee
Q psy2110 162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR-GIAKIISAHMHPVC 240 (622)
Q Consensus 162 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~ 240 (622)
||+|++|++.+++.+..+..|.. .+. ++++++..+++++.++.+++|+.... ..+..+.+|...+.
T Consensus 88 Dg~v~iw~~~~~~~~~~~~~h~~-----------~~~--~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLRNMTSHSA-----------RVG--SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 154 (318)
T ss_dssp TSEEEEEETTTTEEEEEEECCSS-----------CEE--EEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred CCcEEEeecCCceeEEEecCccc-----------eEE--EeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceE
Confidence 99999999999998888877653 233 45566789999999999999998865 45677889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcE-----EEEEeCCCCeEEEEEeCCCCeEEE--EeeCCCcEEEEEecCCcee
Q psy2110 241 SISWSRNGYKIISASTDNNVCIWDVLTGEC-----EQKYRFPSPILKVQFHPRNDHMFL--VCPMRHAAVLVDTDGDHQI 313 (622)
Q Consensus 241 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~i~~~d~~~~~~~ 313 (622)
.+.+++++++|++++.|+.|++||+++++. .....+...+.++.++|++..++. +++.++.+++|+.......
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 999999999999999999999999988753 223336788999999998887664 4567889999999887665
Q ss_pred ecccCCCCceEEEEEeeCCCEEEEEe--cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy2110 314 VPIDEDSDLSIVASFDRRGQHVVTGN--SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNH 391 (622)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~ 391 (622)
... .+...+..+.+++++..+++++ .|+.|++||+++++++..+.+|...|++++|+|++++|++++.|++|+|||+
T Consensus 235 ~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 235 SAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp EEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 544 3556688899999999887755 7899999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy2110 392 QE 393 (622)
Q Consensus 392 ~~ 393 (622)
.+
T Consensus 314 ~~ 315 (318)
T 4ggc_A 314 FE 315 (318)
T ss_dssp SC
T ss_pred CC
Confidence 73
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.3e-35 Score=293.61 Aligned_cols=287 Identities=11% Similarity=0.173 Sum_probs=235.1
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL 224 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~ 224 (622)
.++.|++ ..+++++.|+.|++|++.+++....+..... ..|.+++|+|++++|++|+.+|.|++||+.
T Consensus 97 ~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 97 NLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDES----------TYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp BCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTT----------CCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCC----------CCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 4567765 5688888999999999999887766654311 358999999999999999999999999999
Q ss_pred CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110 225 TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL-TGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAA 302 (622)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i 302 (622)
+++.+..+.+|...|.+++| ++++|++++.||.|++||++ .......+. |...|.+++|+|++. ++++++.|+.+
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v 241 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVV 241 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeE
Confidence 99999999999999999999 56799999999999999998 455566665 889999999999876 68889999999
Q ss_pred EEEEecCCceeecccCCCCceEEEEEeeCC-CEEEEEe--cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy2110 303 VLVDTDGDHQIVPIDEDSDLSIVASFDRRG-QHVVTGN--SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLV 379 (622)
Q Consensus 303 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 379 (622)
++||+++......+..|...+.+++|+|++ .++++++ .|+.|++||+.+++++..+. +...|.+++|+|++++|++
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence 999999998888888999999999999977 4555554 79999999999999998886 5578999999999999999
Q ss_pred Ee--CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC
Q psy2110 380 NT--GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT 457 (622)
Q Consensus 380 ~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~ 457 (622)
++ .|+.|++|++.. ...........+...+.+++|+|+|++|++++. |+.|++|++.+++.+.....+
T Consensus 321 ~~g~~dg~i~v~~~~~---------~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~ 390 (401)
T 4aez_A 321 THGFPDNNLSIWSYSS---------SGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS-DENLKFWRVYDGDHVKRPIPI 390 (401)
T ss_dssp EECTTTCEEEEEEEET---------TEEEEEEEEECCSSCCCEEEECTTSSEEEEECT-TSEEEEEECCC----------
T ss_pred EeecCCCcEEEEecCC---------ccceeEEEecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEECCCCccccccccc
Confidence 54 799999999983 122222222223456788999999999999997 999999999998877665443
No 87
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.7e-36 Score=306.74 Aligned_cols=283 Identities=16% Similarity=0.197 Sum_probs=225.6
Q ss_pred ccceeEEEEcC-CCCEEEEecCCCCeEEEEEcCCCceE--EEEeccCcceeEEEEeecCccccccceeEEEEcC-CCCEE
Q psy2110 81 KTMWKKCCFSG-DGEYVCAGSARQHALYIWEKSVGNLV--KILHGTKGELLLDVVEFDGALDCISLAVTCAFNK-RGTLL 156 (622)
Q Consensus 81 ~~~~~~~~~sp-~~~~l~~~~~~~~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l 156 (622)
...|+|++|+| ++++||+|+.| |.|+|||+.+++.. ..+.+|.+.| ++++|+| ++++|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~d-g~i~lWd~~~~~~~~~~~~~gH~~~V-----------------~~l~f~p~~~~~l 180 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKG-GDIMLWNFGIKDKPTFIKGIGAGGSI-----------------TGLKFNPLNTNQF 180 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETT-SCEEEECSSCCSCCEEECCCSSSCCC-----------------CEEEECSSCTTEE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCC-CEEEEEECCCCCceeEEEccCCCCCE-----------------EEEEEeCCCCCEE
Confidence 44588999999 56789999875 99999999877644 4456898888 5999998 68899
Q ss_pred EEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110 157 AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM 236 (622)
Q Consensus 157 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 236 (622)
++|+.||+|++||+.++........+... ..+.+++|+|++++|++|+.||.|++||+. ++.+..+.+|.
T Consensus 181 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~ 250 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNILRVFASSDTIN---------IWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHK 250 (435)
T ss_dssp EEECSSSCEEEEETTSCEEEEEECCSSCS---------CCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCS
T ss_pred EEEeCCCEEEEeeccCCceeEEeccCCCC---------ccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEeccc
Confidence 99999999999999875433322222211 246789999999999999999999999986 45667888999
Q ss_pred cCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEE----eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110 237 HPVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKY----RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH 311 (622)
Q Consensus 237 ~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 311 (622)
..|++++|+|++. +|++++.|+.|++||+++.+....+ .|...|.+++|+|++. ++++++.|+.|++||+.+..
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSS
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCc
Confidence 9999999999876 7889999999999999887644332 3778999999999987 57889999999999998876
Q ss_pred eeecccCCCC------ceEEEEEeeCCCEEEEEe------------cCCeEEEEeCCCccEEEEEe-cCCCCEEEE-EEc
Q psy2110 312 QIVPIDEDSD------LSIVASFDRRGQHVVTGN------------SKGKVLVLSCPALELKASFK-ASTTAIKSI-EFA 371 (622)
Q Consensus 312 ~~~~~~~~~~------~~~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~-~~s 371 (622)
....+..|.. ......|++++..++++. .++.|++||..+++.+..+. .|...|.++ +|+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fs 409 (435)
T 4e54_B 330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFN 409 (435)
T ss_dssp SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEEC
T ss_pred cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEEC
Confidence 6555444332 223456777777666654 33579999999999988765 677888887 699
Q ss_pred CCCCEEEEEeCCCcEEEEeccc
Q psy2110 372 RRGNCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 372 ~~~~~l~~~~~d~~i~i~d~~~ 393 (622)
|+|++|++++ |+.|+||++++
T Consensus 410 pdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 410 PMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp TTSSCEEEEC-SSEEEECCCC-
T ss_pred CCCCEEEEEc-CCcEEEEECCc
Confidence 9999998876 78999999984
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.5e-35 Score=296.73 Aligned_cols=295 Identities=12% Similarity=0.244 Sum_probs=233.5
Q ss_pred ceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccc
Q psy2110 4 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM 83 (622)
Q Consensus 4 V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (622)
.++|+||+++ +||+|. |++|+|||..+++. +++... ..+...
T Consensus 108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~----------------~~~~~~--------------------~~~~~~ 149 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDI----------------LQLLQM--------------------EQPGEY 149 (420)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCE----------------EEEEEC--------------------CSTTCC
T ss_pred ceeEEECCCC-EEEEEe-CCEEEEEECCCCCE----------------EEEEEe--------------------cCCCCc
Confidence 3567888754 677654 78888888654322 122221 123345
Q ss_pred eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110 84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG 163 (622)
Q Consensus 84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 163 (622)
|.+++|+|+|++||+|+.| +.|+|||+.+++.+..+.+|...+. ++++ ++.+|++|+.|+
T Consensus 150 V~sv~fspdg~~lasgs~D-g~v~iWd~~~~~~~~~~~~h~~~v~-----------------~~s~--~~~~l~sgs~d~ 209 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNMTSHSARVG-----------------SLSW--NSYILSSGSRSG 209 (420)
T ss_dssp EEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCCSSCEE-----------------EEEE--ETTEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEECC-CeEEEEEcCCCcEEEEEeCCCCceE-----------------EEee--CCCEEEEEeCCC
Confidence 7899999999999999975 9999999999999999999998873 6665 578999999999
Q ss_pred cEEEEecCCcc-cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc----eEEEeccCCcC
Q psy2110 164 RIVLWDFLTRG-IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG----IAKIISAHMHP 238 (622)
Q Consensus 164 ~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~ 238 (622)
.+++|+..... .+..+..|. ..+..+.++|+++++++++.|+.+++|+..+++ .+.....|...
T Consensus 210 ~i~~~d~~~~~~~~~~~~~h~-----------~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~ 278 (420)
T 4gga_A 210 HIHHHDVRVAEHHVATLSGHS-----------QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 278 (420)
T ss_dssp EEEEEETTSSSCEEEEEECCS-----------SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSC
T ss_pred ceeEeeecccceeeEEecccc-----------cceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCc
Confidence 99999987643 334444444 348899999999999999999999999998765 34667789999
Q ss_pred eeEEEEcCCCC-EEEEE--eCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEe-eCCCcEEEEEecCCceee
Q psy2110 239 VCSISWSRNGY-KIISA--STDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVC-PMRHAAVLVDTDGDHQIV 314 (622)
Q Consensus 239 v~~~~~s~~~~-~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~ 314 (622)
|.+++|+|++. .++++ +.|++|++||+.++++...+.....+.++.|+|++..+++++ ..++.|++||+.+...+.
T Consensus 279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~ 358 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 358 (420)
T ss_dssp EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE
Confidence 99999999654 55554 468999999999999999999999999999999999877664 478999999999999999
Q ss_pred cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEE
Q psy2110 315 PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKS 367 (622)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 367 (622)
.+.+|...|.+++|+|+|++|++|+.|++|++||+....+......+...+..
T Consensus 359 ~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 359 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAK 411 (420)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------------
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccc
Confidence 99999999999999999999999999999999999877666555555444333
No 89
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=297.65 Aligned_cols=280 Identities=18% Similarity=0.361 Sum_probs=228.1
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-----------eEEEeccCC------------cCeeEEEEcCCC--C
Q psy2110 195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG-----------IAKIISAHM------------HPVCSISWSRNG--Y 249 (622)
Q Consensus 195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~s~~~--~ 249 (622)
..|.+++|+|+|++|++|+.||.|++|++.+++ ....+.+|. ..|++++|+|++ .
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 579999999999999999999999999998876 577888998 889999999998 7
Q ss_pred EEEEEeCCCcEEEEECCCCcEE---------------------------------------EEE--eCCCCeEEEEEeCC
Q psy2110 250 KIISASTDNNVCIWDVLTGECE---------------------------------------QKY--RFPSPILKVQFHPR 288 (622)
Q Consensus 250 ~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~~--~~~~~v~~~~~~~~ 288 (622)
+|++++.|+.|++||+.+++.. ..+ .|...|.+++|+|+
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence 9999999999999998764432 122 37789999999999
Q ss_pred CCeEEEEeeCCCcEEEEEecCC-ceee-------cccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCccE----E
Q psy2110 289 NDHMFLVCPMRHAAVLVDTDGD-HQIV-------PIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALEL----K 355 (622)
Q Consensus 289 ~~~~~~~~~~~~~i~~~d~~~~-~~~~-------~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~ 355 (622)
+. +++++ .|+.+++||++.. .... .+..|...+.+++|+|++ ++|++|+.||.|++||+++++. +
T Consensus 189 ~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 266 (447)
T 3dw8_B 189 YE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266 (447)
T ss_dssp SS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred CC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence 87 45566 7999999999843 3333 366889999999999998 9999999999999999999886 7
Q ss_pred EEEecCCC------------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccce-------
Q psy2110 356 ASFKASTT------------AIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT------- 416 (622)
Q Consensus 356 ~~~~~~~~------------~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------- 416 (622)
..+..|.. .|.+++|+|++++|++++. +.|++||++. ...++..+..+....
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~--------~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM--------ENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC--------CSSCSCCEESCGGGTTTHHHHH
T ss_pred eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC--------Cccccceeeccccccccccccc
Confidence 88888876 8999999999999999998 9999999983 133444454432211
Q ss_pred ------eeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCC--------------------------------
Q psy2110 417 ------MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK-------------------------------- 458 (622)
Q Consensus 417 ------~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------------- 458 (622)
.+..++|+|+|++|++++. |+.|++||+.+++.+ .+.++.
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMTGSY-NNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDF 415 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEEECS-TTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCT
T ss_pred cccccccceEEEECCCCCEEEEecc-CCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCccccccccccccc
Confidence 1234899999999999997 999999999998875 333321
Q ss_pred CCceeEEEECCCCCEEEEEeCCcEEEeec
Q psy2110 459 GELLLDVVWHPVRPIIASISSGVVSLWAQ 487 (622)
Q Consensus 459 ~~~v~~v~~sp~~~~l~s~~dg~v~iw~~ 487 (622)
...|..++|+|++.+||+++.+.+++|..
T Consensus 416 ~~~i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 416 NKKILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp TSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred CCceeEEEECCCCCEEEEEecceeeeecc
Confidence 12388999999999999999666888864
No 90
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.1e-35 Score=293.04 Aligned_cols=281 Identities=11% Similarity=0.054 Sum_probs=218.5
Q ss_pred ceEEEEECCCCCEEEEEeCCC-------eEEEEEcCCCce----------EEEeccCCcCeeEEEEcCCCCEEEEEe---
Q psy2110 196 LAVTCAFNKRGTLLAVGCNDG-------RIVLWDFLTRGI----------AKIISAHMHPVCSISWSRNGYKIISAS--- 255 (622)
Q Consensus 196 ~v~~~~~s~~g~~l~~~~~dg-------~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~s~~~~~l~s~~--- 255 (622)
+|++++|+|+|++|++|+.+. .|++|++..... ...+..|...+.+++++ +..++++.
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~ 93 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNEN 93 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCC
Confidence 699999999999999987543 599999875431 13466788889888774 55666654
Q ss_pred --------CCCcEEEEECCCCcEE-E---EEe------CCCCeEEEEEeCCCCeEEE-EeeCCCcEEEEEecCCceeecc
Q psy2110 256 --------TDNNVCIWDVLTGECE-Q---KYR------FPSPILKVQFHPRNDHMFL-VCPMRHAAVLVDTDGDHQIVPI 316 (622)
Q Consensus 256 --------~d~~i~iwd~~~~~~~-~---~~~------~~~~v~~~~~~~~~~~~~~-~~~~~~~i~~~d~~~~~~~~~~ 316 (622)
.|+.+++|++.+.... . ... ....+..++|+|||+.+++ +++.|+.|++||+.+...+..+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 4678999998765322 1 111 2345889999999997654 4557899999999998888777
Q ss_pred cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEE--EecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEe
Q psy2110 317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKAS--FKASTTAIKSIEFARRGNCLLVNTGDR----LIRVYN 390 (622)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d~----~i~i~d 390 (622)
. |...|.+++|+|+|+++++++.++ +.+|+..+++.+.. ...|...|.+++|+|+++++++++.|+ .+++|+
T Consensus 174 ~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 174 E-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp E-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred C-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 5 567799999999999999998665 67777777765543 346888899999999999999998876 588888
Q ss_pred cccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEE-ecCCCCceeEEEECC
Q psy2110 391 HQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL-HGTKGELLLDVVWHP 469 (622)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~v~~sp 469 (622)
+... ................+.+++|||||++||+|+. |++|+|||+.+++++..+ .+|... |++++|+|
T Consensus 252 ~~~~-------~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~-D~~V~iwd~~~~~~~~~~~~gH~~~-V~~v~fSp 322 (365)
T 4h5i_A 252 IKSG-------NTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN-DNSIALVKLKDLSMSKIFKQAHSFA-ITEVTISP 322 (365)
T ss_dssp EETT-------EEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET-TSCEEEEETTTTEEEEEETTSSSSC-EEEEEECT
T ss_pred cccc-------eecceeeeeecCCCCCeEeEEECCCCCceEEEcC-CCEEEEEECCCCcEEEEecCcccCC-EEEEEECC
Confidence 7631 1111111122223356789999999999999997 999999999999999875 788876 99999999
Q ss_pred CCCEEEEEe-CCcEEEeecCC
Q psy2110 470 VRPIIASIS-SGVVSLWAQNQ 489 (622)
Q Consensus 470 ~~~~l~s~~-dg~v~iw~~~~ 489 (622)
++++||+++ |++|+||++..
T Consensus 323 dg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TSCEEEEEETTSEEEEEECCT
T ss_pred CCCEEEEEeCCCeEEEEEcCC
Confidence 999999999 99999999953
No 91
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.4e-34 Score=276.19 Aligned_cols=247 Identities=13% Similarity=0.226 Sum_probs=209.7
Q ss_pred EEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCc--ccccccccccCCCccccccccc
Q psy2110 118 KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR--GIAKIISAHMHPEFDGALDCIS 195 (622)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 195 (622)
..+.+|.+.| ++++|+|+|++||+|+.|++|+||++..+ +.+..+..|. .
T Consensus 3 ~~~~~h~~~V-----------------~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~-----------~ 54 (297)
T 2pm7_B 3 VIANAHNEMI-----------------HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHE-----------G 54 (297)
T ss_dssp EECCSCSSCE-----------------EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCS-----------S
T ss_pred eeccCCcCce-----------------EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcccc-----------C
Confidence 4567788877 59999999999999999999999999753 5566666665 3
Q ss_pred ceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCC--CCEEEEEeCCCcEEEEECCCCc
Q psy2110 196 LAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDVLTGE 269 (622)
Q Consensus 196 ~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~ 269 (622)
.|.+++|+++ +++|++|+.|++|++||+.+++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++++.
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~ 134 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG 134 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence 5899999874 8999999999999999998874 55677889999999999997 8899999999999999998763
Q ss_pred E--EEEE-eCCCCeEEEEEeCCC------------CeEEEEeeCCCcEEEEEecCCc----eeecccCCCCceEEEEEee
Q psy2110 270 C--EQKY-RFPSPILKVQFHPRN------------DHMFLVCPMRHAAVLVDTDGDH----QIVPIDEDSDLSIVASFDR 330 (622)
Q Consensus 270 ~--~~~~-~~~~~v~~~~~~~~~------------~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~ 330 (622)
. ...+ .|...|.+++|+|++ ..++++++.|+.|++||+++.. ....+..|...|.+++|+|
T Consensus 135 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp 214 (297)
T 2pm7_B 135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214 (297)
T ss_dssp CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC
Confidence 2 2233 378899999999974 3579999999999999998765 4567788999999999999
Q ss_pred CC---CEEEEEecCCeEEEEeCCCcc---EEEEE--ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 331 RG---QHVVTGNSKGKVLVLSCPALE---LKASF--KASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 331 ~~---~~l~~~~~dg~i~i~d~~~~~---~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
++ .+|++++.|++|++||+.+.. ....+ ..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 215 ~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 215 TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 85 899999999999999987643 22333 4678899999999999999999999999999976
No 92
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=275.94 Aligned_cols=274 Identities=18% Similarity=0.270 Sum_probs=229.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec--cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110 197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS--AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274 (622)
Q Consensus 197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 274 (622)
..+++||+++ +|++|. |++|+|||+.++++++.+. +|...|++++|+|++++|++|+.||+|++||+.+++++..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4568999986 777764 8999999999999887765 67778999999999999999999999999999999999888
Q ss_pred e-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc
Q psy2110 275 R-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL 352 (622)
Q Consensus 275 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 352 (622)
. |...+.++.+.+ .++++++.++.+++|+.... ..+..+..|...+..+.++++++++++++.||.|++||++++
T Consensus 106 ~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 106 TSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp ECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred cCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 7 666777666554 37889999999999998765 556677889999999999999999999999999999999876
Q ss_pred c----EEEEEecCCCCEEEEEEcCCCCEEE---EEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC
Q psy2110 353 E----LKASFKASTTAIKSIEFARRGNCLL---VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG 425 (622)
Q Consensus 353 ~----~~~~~~~~~~~i~~~~~s~~~~~l~---~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 425 (622)
+ .......+...|.+++++|++..++ +++.++.|++|+... ...... ......+..++|+|
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~---------~~~~~~---~~~~~~v~~~~~~~ 250 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---------GACLSA---VDAHSQVCSILWSP 250 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT---------CCEEEE---EECSSCEEEEEEET
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc---------cccccc---ccceeeeeeeeecc
Confidence 5 3455667888999999999876443 456789999999873 222222 22344567789999
Q ss_pred CCCeEEEee-CCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110 426 DGEYVCAGS-ARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN 488 (622)
Q Consensus 426 dg~~l~~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~ 488 (622)
+++.+++++ ..|+.|+|||+.+++++..+.+|.+. |++++|+|++++|++++ ||+|+||++.
T Consensus 251 ~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~-V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 251 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR-VLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCC-EEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 999888764 24899999999999999999999987 99999999999999999 9999999984
No 93
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=294.84 Aligned_cols=303 Identities=13% Similarity=0.152 Sum_probs=227.2
Q ss_pred ccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc-----------eEEEEeccCcceeEEEEeecCccccccceeEE
Q psy2110 79 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN-----------LVKILHGTKGELLLDVVEFDGALDCISLAVTC 147 (622)
Q Consensus 79 ~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~ 147 (622)
.+...+.+++|+|+|++||+|+.+ |.|+||++.+++ ....+.+|..... ..........|+++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~-----~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKG-GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFD-----YLKSLEIEEKINKI 99 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETT-SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEE-----GGGTEEECCCCCEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCC-CeEEEEEecCCCCCCcccccceeEeccccccccccc-----ccccccccCceEEE
Confidence 455678899999999999999975 999999999877 5778888872210 00000001223699
Q ss_pred EEcCCC--CEEEEeeCCCcEEEEecCCccccccc---ccccC-------------C-------------Ccccccccccc
Q psy2110 148 AFNKRG--TLLAVGCNDGRIVLWDFLTRGIAKII---SAHMH-------------P-------------EFDGALDCISL 196 (622)
Q Consensus 148 ~~s~d~--~~l~s~~~dg~i~vw~~~~~~~~~~~---~~~~~-------------~-------------~~~~~~~~~~~ 196 (622)
+|+|++ .+|++++.|++|++|++.++...... ..+.. + ...........
T Consensus 100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 179 (447)
T 3dw8_B 100 RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH 179 (447)
T ss_dssp EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence 999998 79999999999999999875432100 00000 0 00000112246
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceEE-------EeccCCcCeeEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q psy2110 197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAK-------IISAHMHPVCSISWSRNG-YKIISASTDNNVCIWDVLT 267 (622)
Q Consensus 197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~ 267 (622)
|.+++|+|++++|++| .|+.|++||+.+ ++... .+.+|...|++++|+|++ ++|++++.||.|++||+++
T Consensus 180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 180 INSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp CCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred eEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence 8999999999999998 799999999984 44444 356899999999999998 9999999999999999999
Q ss_pred CcE----EEEEe-CCC------------CeEEEEEeCCCCeEEEEeeCCCcEEEEEecC-CceeecccCCCCc-------
Q psy2110 268 GEC----EQKYR-FPS------------PILKVQFHPRNDHMFLVCPMRHAAVLVDTDG-DHQIVPIDEDSDL------- 322 (622)
Q Consensus 268 ~~~----~~~~~-~~~------------~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~------- 322 (622)
++. ...+. +.. .|.+++|+|++.. +++++. +.+++||++. ...+..+..|...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred CccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 886 56666 333 8999999998874 556666 9999999987 6677777666532
Q ss_pred --------eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec---------------------------------C
Q psy2110 323 --------SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA---------------------------------S 361 (622)
Q Consensus 323 --------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------------------~ 361 (622)
+..++|+|++++|++|+.||.|++||+.+++.+. +.. +
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDF 415 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCT
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccccccccc
Confidence 2238999999999999999999999999988763 222 2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 362 TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 362 ~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
...|..++|+|++++||+++.++ +++|..+
T Consensus 416 ~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 416 NKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp TSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred CCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 35688999999999999988775 7777643
No 94
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.9e-34 Score=273.66 Aligned_cols=242 Identities=20% Similarity=0.334 Sum_probs=203.8
Q ss_pred cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCC--CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC--CCE
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV--GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR--GTL 155 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d--~~~ 155 (622)
+...+.+++|+|+|++||+|+.| ++|+|||+.+ ++.+..+.+|.+.| ++++|+++ +++
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D-~~v~iw~~~~~~~~~~~~l~gH~~~V-----------------~~v~~s~~~~g~~ 69 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPV-----------------WRVDWAHPKFGTI 69 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT-SCEEEEEBCSSCBCCCEEECCCSSCE-----------------EEEEECCGGGCSE
T ss_pred CcCceEEEEECCCCCEEEEEeCC-CEEEEEecCCCCcEEEEEEccccCCe-----------------EEEEecCCCcCCE
Confidence 34567799999999999999976 9999999974 46788999999998 59999864 899
Q ss_pred EEEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCc--eE
Q psy2110 156 LAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRG--IA 229 (622)
Q Consensus 156 l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~--~~ 229 (622)
|++|+.|++|++||+.+++ ....+..|. ..|.+++|+|+ |.+|++++.|+.|++||+.++. ..
T Consensus 70 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----------~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHS-----------ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp EEEEETTTEEEEEEBSSSCBCCCEEECCCS-----------SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred EEEEcCCCEEEEEEcCCCceEEEEEeecCC-----------CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee
Confidence 9999999999999998874 233333332 35899999998 8999999999999999998763 24
Q ss_pred EEeccCCcCeeEEEEcCC-------------CCEEEEEeCCCcEEEEECCCCc----EEEEEe-CCCCeEEEEEeCCC--
Q psy2110 230 KIISAHMHPVCSISWSRN-------------GYKIISASTDNNVCIWDVLTGE----CEQKYR-FPSPILKVQFHPRN-- 289 (622)
Q Consensus 230 ~~~~~~~~~v~~~~~s~~-------------~~~l~s~~~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~-- 289 (622)
..+.+|...|.+++|+|+ +++|++|+.|++|++||+++++ ....+. |...|.+++|+|++
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 567899999999999997 5799999999999999998776 445555 78899999999986
Q ss_pred CeEEEEeeCCCcEEEEEecCCc---e--eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110 290 DHMFLVCPMRHAAVLVDTDGDH---Q--IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP 350 (622)
Q Consensus 290 ~~~~~~~~~~~~i~~~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 350 (622)
..++++++.|+.+++||++... . ......+...+.+++|+|+|++|++++.||.|++|+..
T Consensus 219 ~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 219 RSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 5689999999999999998642 1 22224677889999999999999999999999999976
No 95
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.7e-34 Score=285.58 Aligned_cols=306 Identities=16% Similarity=0.215 Sum_probs=222.4
Q ss_pred EEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcc----cccccccccCCCccccccc
Q psy2110 118 KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG----IAKIISAHMHPEFDGALDC 193 (622)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~~~~~~ 193 (622)
..+.+|.+.| ++++|+|++++|++|+.||.|++|++.++. ....+..|.
T Consensus 5 ~~~~gH~~~v-----------------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---------- 57 (351)
T 3f3f_A 5 PFDSGHDDLV-----------------HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD---------- 57 (351)
T ss_dssp CEECCCSSCE-----------------EEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS----------
T ss_pred ccCcccccce-----------------eEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC----------
Confidence 3567888887 599999999999999999999999998763 333334443
Q ss_pred ccceEEEEECC--CCCEEEEEeCCCeEEEEEcCCC---------ceEEEeccCCcCeeEEEEcCC--CCEEEEEeCCCcE
Q psy2110 194 ISLAVTCAFNK--RGTLLAVGCNDGRIVLWDFLTR---------GIAKIISAHMHPVCSISWSRN--GYKIISASTDNNV 260 (622)
Q Consensus 194 ~~~v~~~~~s~--~g~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i 260 (622)
..|.+++|+| ++++|++++.||.|++||+.++ +....+..|...|.+++|+|+ +.+|++++.||.|
T Consensus 58 -~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 136 (351)
T 3f3f_A 58 -SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL 136 (351)
T ss_dssp -SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred -CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence 3589999999 6999999999999999999886 557788899999999999999 9999999999999
Q ss_pred EEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC---CCEEEE
Q psy2110 261 CIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR---GQHVVT 337 (622)
Q Consensus 261 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~ 337 (622)
++||+++++.+..+.....+..+.+ ....+...+.+++|+|+ +.++++
T Consensus 137 ~iwd~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~p~~~~~~~l~~ 187 (351)
T 3f3f_A 137 RLYDALEPSDLRSWTLTSEMKVLSI-----------------------------PPANHLQSDFCLSWCPSRFSPEKLAV 187 (351)
T ss_dssp EEEECSSTTCTTCCEEEEEEESCSC-----------------------------CCSSCSCCCEEEEECCCSSSCCEEEE
T ss_pred EEecCCChHHhcccccccccccccc-----------------------------ccCCcccceeEEEeccCCCCCcEEEE
Confidence 9999998765433321111111111 11235567888999997 899999
Q ss_pred EecCCeEEEEeCCCccE--EEEEecCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec
Q psy2110 338 GNSKGKVLVLSCPALEL--KASFKASTTAIKSIEFARRG----NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD 411 (622)
Q Consensus 338 ~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 411 (622)
++.++.+.+|+...++. +..+.+|...|++++|+|++ ++|++++.|+.|++||+...... ....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~- 257 (351)
T 3f3f_A 188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSP---------LASE- 257 (351)
T ss_dssp EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------
T ss_pred ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCc---------cccC-
Confidence 99999998888877765 67788999999999999998 89999999999999999842111 1111
Q ss_pred cccceeeeeEEEcCCCCeEEEeeCC---CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110 412 LVNKTMWKKCCFSGDGEYVCAGSAR---QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ 487 (622)
Q Consensus 412 ~~~~~~~~~~~~spdg~~l~~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~ 487 (622)
..........+++....++.+... ...+.+|+....+.+..+.+|... |++++|+|++++|++++ ||.|++|++
T Consensus 258 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 258 -ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE-VWSVSWNLTGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp ----------------------------------CCSEEEEEEEEECTTSSC-EEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred -CcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc-EEEEEEcCCCCEEEEecCCCcEEEEec
Confidence 111111222344444444443321 345667777777888889999887 99999999999999999 999999999
Q ss_pred CCccc
Q psy2110 488 NQVEN 492 (622)
Q Consensus 488 ~~~~~ 492 (622)
.....
T Consensus 336 ~~~~~ 340 (351)
T 3f3f_A 336 TYSNE 340 (351)
T ss_dssp CTTSC
T ss_pred CcCcc
Confidence 75433
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.8e-33 Score=276.31 Aligned_cols=281 Identities=9% Similarity=0.055 Sum_probs=236.8
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eEEEeccCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEEC-CCCc
Q psy2110 195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---IAKIISAHMHPVCSISWSRNGY-KIISASTDNNVCIWDV-LTGE 269 (622)
Q Consensus 195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~-~~~~ 269 (622)
..|.+++|+|++++|++++.|+.|++|++.++. ....+..|...|.+++|+|+++ +|++++.||.|++||+ .+++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 91 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence 468999999999999999999999999998877 3455668999999999999999 9999999999999999 8888
Q ss_pred EEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC---------CceeecccCCCCceEEEEEeeCCCEEEEE
Q psy2110 270 CEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG---------DHQIVPIDEDSDLSIVASFDRRGQHVVTG 338 (622)
Q Consensus 270 ~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (622)
...... |...|.+++|+| + .++++++.++.+++||+++ ...+..+. +...+.+++|++++ ++++
T Consensus 92 ~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~ 166 (342)
T 1yfq_A 92 FQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVG 166 (342)
T ss_dssp EEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEE
T ss_pred eEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEE
Confidence 765556 889999999999 4 4788999999999999987 65565555 78889999999887 9999
Q ss_pred ecCCeEEEEeCCC-cc--EEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecccc
Q psy2110 339 NSKGKVLVLSCPA-LE--LKASFKASTTAIKSIEFAR-RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN 414 (622)
Q Consensus 339 ~~dg~i~i~d~~~-~~--~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 414 (622)
+.++.|++||+++ +. .......|...+.+++|+| ++++|++++.|+.|++|+++.... .........+..+..
T Consensus 167 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~---~~~~~~~~~~~~~~~ 243 (342)
T 1yfq_A 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD---DYNSSKRFAFRCHRL 243 (342)
T ss_dssp ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC---STTCTTCEEEECCCC
T ss_pred eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc---ccccccceeeecccc
Confidence 9999999999988 54 3445557888999999999 999999999999999999984100 000244455554432
Q ss_pred -------ceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC-CCCceeEEEECCCCCEEEEEe-CCc-EEE
Q psy2110 415 -------KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT-KGELLLDVVWHPVRPIIASIS-SGV-VSL 484 (622)
Q Consensus 415 -------~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~s~~-dg~-v~i 484 (622)
...+.+++|+|++++|++++. ||.|++||+.+++++..+.+| ... |.+++ |++++|++++ ||+ .+.
T Consensus 244 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~~~-v~~~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGS-DGIISCWNLQTRKKIKNFAKFNEDS-VVKIA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CTTCCSSCCCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEECCCCSSSE-EEEEE--ECSSEEEEEEECTHHHHC
T ss_pred cccccccceeEEEEEEcCCCCEEEEecC-CceEEEEcCccHhHhhhhhcccCCC-ceEec--CCCCeEEEEecCCccccc
Confidence 336789999999999999997 999999999999999999998 554 99999 9999999999 998 555
Q ss_pred eec
Q psy2110 485 WAQ 487 (622)
Q Consensus 485 w~~ 487 (622)
|..
T Consensus 320 ~~~ 322 (342)
T 1yfq_A 320 AAI 322 (342)
T ss_dssp SSS
T ss_pred ccc
Confidence 553
No 97
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.7e-33 Score=284.26 Aligned_cols=286 Identities=12% Similarity=0.104 Sum_probs=242.5
Q ss_pred hhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEE-----EEeccCcceeEEEEeecCccccccceeEEEE
Q psy2110 75 LQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK-----ILHGTKGELLLDVVEFDGALDCISLAVTCAF 149 (622)
Q Consensus 75 ~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~ 149 (622)
+..+..+..+.+++|+|++.++++++. ++.|++||+.+++... .+.+|...+ .+++|
T Consensus 116 ~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v-----------------~~~~~ 177 (433)
T 3bws_A 116 ISRFKTGFQPKSVRFIDNTRLAIPLLE-DEGMDVLDINSGQTVRLSPPEKYKKKLGFV-----------------ETISI 177 (433)
T ss_dssp EEEEECSSCBCCCEESSSSEEEEEBTT-SSSEEEEETTTCCEEEECCCHHHHTTCCEE-----------------EEEEE
T ss_pred EEEEcCCCCceEEEEeCCCeEEEEeCC-CCeEEEEECCCCeEeeecCcccccccCCce-----------------eEEEE
Confidence 334444555668999996666666664 5899999999998887 344677666 59999
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEE-eCCCeEEEEEcCCCce
Q psy2110 150 NKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWDFLTRGI 228 (622)
Q Consensus 150 s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~iwd~~~~~~ 228 (622)
+|+++++++++.|+.|++||+.+++....+..+. ..+.+++|+|++++++++ +.++.|++||+.+++.
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG-----------KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS-----------SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC-----------CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence 9999999999999999999999988777766443 347899999999988555 4799999999999988
Q ss_pred EEEeccCCcCeeEEEEcCCCCEEEEEe--------CCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110 229 AKIISAHMHPVCSISWSRNGYKIISAS--------TDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH 300 (622)
Q Consensus 229 ~~~~~~~~~~v~~~~~s~~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 300 (622)
+..+..+ ..+.+++|+|++++|++++ .|+.|++||+.+++....+.+...+.+++|+|+++.++++++.++
T Consensus 247 ~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 325 (433)
T 3bws_A 247 IRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCS 325 (433)
T ss_dssp EEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTT
T ss_pred EEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCC
Confidence 8888765 4589999999999999988 588999999999998888877778999999999998999999999
Q ss_pred cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec---------------CCeEEEEeCCCccEEEEEecCCCCE
Q psy2110 301 AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS---------------KGKVLVLSCPALELKASFKASTTAI 365 (622)
Q Consensus 301 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~i 365 (622)
.+++||+.+......+. +...+..++|+|+|+++++++. ||.|++||+.+++.+..+..+ ..+
T Consensus 326 ~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~ 403 (433)
T 3bws_A 326 KIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQP 403 (433)
T ss_dssp EEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSE
T ss_pred EEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCC
Confidence 99999999877766665 5667889999999999988876 579999999999998888764 678
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEecc
Q psy2110 366 KSIEFARRGNCLLVNTG-DRLIRVYNHQ 392 (622)
Q Consensus 366 ~~~~~s~~~~~l~~~~~-d~~i~i~d~~ 392 (622)
.+++|+|+|++|++++. |+.|++|++.
T Consensus 404 ~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 404 TGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 99999999999998875 9999999986
No 98
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.3e-33 Score=286.34 Aligned_cols=268 Identities=17% Similarity=0.321 Sum_probs=237.8
Q ss_pred cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110 82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN 161 (622)
Q Consensus 82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 161 (622)
..+.|++| ++++|++|+.+ |.|++||+.+++....+.+|.+.| ++++| ++++|++|+.
T Consensus 134 ~~v~~~~~--d~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~h~~~v-----------------~~l~~--~~~~l~sg~~ 191 (435)
T 1p22_A 134 KGVYCLQY--DDQKIVSGLRD-NTIKIWDKNTLECKRILTGHTGSV-----------------LCLQY--DERVIITGSS 191 (435)
T ss_dssp CCEEEEEC--CSSEEEEEESS-SCEEEEESSSCCEEEEECCCSSCE-----------------EEEEC--CSSEEEEEET
T ss_pred CcEEEEEE--CCCEEEEEeCC-CeEEEEeCCCCeEEEEEcCCCCcE-----------------EEEEE--CCCEEEEEcC
Confidence 34555554 89999999975 999999999999999999999988 48888 7889999999
Q ss_pred CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE---EEeccCCcC
Q psy2110 162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA---KIISAHMHP 238 (622)
Q Consensus 162 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~ 238 (622)
||.|++||+.+++....+..|. ..|.+++|++ .++++|+.||.|++||+.++... ..+.+|...
T Consensus 192 dg~i~vwd~~~~~~~~~~~~h~-----------~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 258 (435)
T 1p22_A 192 DSTVRVWDVNTGEMLNTLIHHC-----------EAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258 (435)
T ss_dssp TSCEEEEESSSCCEEEEECCCC-----------SCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred CCeEEEEECCCCcEEEEEcCCC-----------CcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCc
Confidence 9999999999998888877664 3488999974 59999999999999999987755 677899999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc
Q psy2110 239 VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID 317 (622)
Q Consensus 239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 317 (622)
|.+++| ++++|++++.||.|++||+++++.+..+. +...+.++.+++ .++++++.|+.+++||++++..+..+.
T Consensus 259 v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~ 333 (435)
T 1p22_A 259 VNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLE 333 (435)
T ss_dssp EEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence 999999 78899999999999999999999998888 778999999953 378999999999999999999999999
Q ss_pred CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc---------EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110 318 EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE---------LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV 388 (622)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 388 (622)
.|...+.++++ ++.++++|+.||.|++||+.+++ ++..+..|...|.+++| ++++|++++.||.|++
T Consensus 334 ~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 334 GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 99999999988 78899999999999999997766 88899999999999999 7888999999999999
Q ss_pred Eeccc
Q psy2110 389 YNHQE 393 (622)
Q Consensus 389 ~d~~~ 393 (622)
||+..
T Consensus 410 wd~~~ 414 (435)
T 1p22_A 410 WDFLN 414 (435)
T ss_dssp EC---
T ss_pred EECCC
Confidence 99984
No 99
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.3e-34 Score=277.44 Aligned_cols=246 Identities=15% Similarity=0.227 Sum_probs=204.0
Q ss_pred EEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccc
Q psy2110 119 ILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISL 196 (622)
Q Consensus 119 ~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 196 (622)
.+.+|.+.| ++++|+|+|++||+|+.|++|+|||+.++. .+..+..|. ..
T Consensus 8 ~~~~H~~~V-----------------~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~-----------~~ 59 (316)
T 3bg1_A 8 VDTSHEDMI-----------------HDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHE-----------GP 59 (316)
T ss_dssp ------CCE-----------------EEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCS-----------SC
T ss_pred ecccccCeE-----------------EEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC-----------cc
Confidence 456788887 599999999999999999999999998764 344555554 35
Q ss_pred eEEEEECC--CCCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCC--CCEEEEEeCCCcEEEEECCCCcE
Q psy2110 197 AVTCAFNK--RGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDVLTGEC 270 (622)
Q Consensus 197 v~~~~~s~--~g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~ 270 (622)
|.+++|++ ++++|++++.|++|++||+.++. ....+.+|...|++++|+|+ +.+|++++.|+.|++||++++..
T Consensus 60 V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~ 139 (316)
T 3bg1_A 60 VWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ 139 (316)
T ss_dssp EEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred EEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence 89999986 48999999999999999998874 56678899999999999997 78999999999999999987643
Q ss_pred EE---EEe-CCCCeEEEEEeCCC----------------CeEEEEeeCCCcEEEEEecCC---ceeecccCCCCceEEEE
Q psy2110 271 EQ---KYR-FPSPILKVQFHPRN----------------DHMFLVCPMRHAAVLVDTDGD---HQIVPIDEDSDLSIVAS 327 (622)
Q Consensus 271 ~~---~~~-~~~~v~~~~~~~~~----------------~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~ 327 (622)
.. .+. |...+.+++|+|+. ..++++++.|+.+++||++.. .....+..|...|.+++
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 140 WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE
Confidence 22 222 66789999999974 247899999999999999754 45677889999999999
Q ss_pred EeeCC----CEEEEEecCCeEEEEeCCCc---c-EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 328 FDRRG----QHVVTGNSKGKVLVLSCPAL---E-LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 328 ~~~~~----~~l~~~~~dg~i~i~d~~~~---~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
|+|++ ++|++++.||+|++|++.+. + ....+..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99986 89999999999999998762 1 223456788999999999999999999999999999976
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.4e-33 Score=278.52 Aligned_cols=274 Identities=12% Similarity=0.076 Sum_probs=235.4
Q ss_pred cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc---eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC-E
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN---LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT-L 155 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~-~ 155 (622)
+...+.+++|+|++++|++++.+ +.|++|++.+++ ....+.+|...+ ++++|+|+++ +
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~ 71 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPL-----------------LCCNFIDNTDLQ 71 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETT-SEEEEEEEETTTTEEEEEEEEECSSCE-----------------EEEEEEESSSEE
T ss_pred CCCcEEEEEEcCCCCEEEEEcCC-CeEEEEEeCCCCccccceeeeecCCce-----------------EEEEECCCCCcE
Confidence 44568899999999999999975 999999998877 345566888887 5999999999 9
Q ss_pred EEEeeCCCcEEEEec-CCccccccccc--ccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-------
Q psy2110 156 LAVGCNDGRIVLWDF-LTRGIAKIISA--HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT------- 225 (622)
Q Consensus 156 l~s~~~dg~i~vw~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~------- 225 (622)
|++|+.||.|++|++ .+++. ..+.. |. ..|.+++|+| +++|++++.|+.|++||+.+
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~-----------~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF-QALTNNEAN-----------LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA 138 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE-EECBSCCCC-----------SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred EEEEcCCCeEEEEEeccCCce-EeccccCCC-----------CceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc
Confidence 999999999999999 77654 33433 32 3589999999 99999999999999999987
Q ss_pred --CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEE---EEEeCCCCeEEEEEeC-CCCeEEEEeeC
Q psy2110 226 --RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT-GECE---QKYRFPSPILKVQFHP-RNDHMFLVCPM 298 (622)
Q Consensus 226 --~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~---~~~~~~~~v~~~~~~~-~~~~~~~~~~~ 298 (622)
++++..+. |...|.+++|++++ |++++.|+.|++||+++ +... ....+...+.+++|+| ++. ++++++.
T Consensus 139 ~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~ 214 (342)
T 1yfq_A 139 VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSI 214 (342)
T ss_dssp EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEET
T ss_pred ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEec
Confidence 77666666 88999999999887 99999999999999998 5432 2333778999999999 876 6788889
Q ss_pred CCcEEEEEecCC------ceeecccCCCC---------ceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecC-C
Q psy2110 299 RHAAVLVDTDGD------HQIVPIDEDSD---------LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS-T 362 (622)
Q Consensus 299 ~~~i~~~d~~~~------~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~ 362 (622)
++.+++|+++.. .....+..|.. .+.+++|+|++++|++++.||.|++||+.+++++..+..| .
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~ 294 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE 294 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccC
Confidence 999999999876 66666666654 8999999999999999999999999999999999999998 9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCc-EEEEe
Q psy2110 363 TAIKSIEFARRGNCLLVNTGDRL-IRVYN 390 (622)
Q Consensus 363 ~~i~~~~~s~~~~~l~~~~~d~~-i~i~d 390 (622)
..|.+++ |++++|++++.|+. .+.|.
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CCceEec--CCCCeEEEEecCCccccccc
Confidence 9999999 99999999999998 55554
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.2e-34 Score=287.47 Aligned_cols=282 Identities=17% Similarity=0.258 Sum_probs=234.0
Q ss_pred EEEEECCCCCEEE-EEeCCCeEEEEEcCCCc----eEEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCC---
Q psy2110 198 VTCAFNKRGTLLA-VGCNDGRIVLWDFLTRG----IAKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTG--- 268 (622)
Q Consensus 198 ~~~~~s~~g~~l~-~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~--- 268 (622)
..++++|+...++ +++.+|.|++|++.... ....+.+|.+.|++++|+| ++++|++++.||.|++||+.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 3478888765444 47889999999996542 3456778999999999999 9999999999999999999987
Q ss_pred ----cEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc--cCCCCceEEEEEeeCCCEEEEEecC
Q psy2110 269 ----ECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI--DEDSDLSIVASFDRRGQHVVTGNSK 341 (622)
Q Consensus 269 ----~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d 341 (622)
+.+..+. |...|.+++|+|++..++++++.|+.+++||+.+...+..+ ..|...+.+++|+|++++|++++.|
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 197 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT
T ss_pred cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC
Confidence 4556665 88999999999999778999999999999999999888888 7899999999999999999999999
Q ss_pred CeEEEEeCCCccEEEEE-ecCCCC-EEEEEEcCCCCEEEEE---eCCCcEEEEecccccccCCCCCCCcceeeeccccce
Q psy2110 342 GKVLVLSCPALELKASF-KASTTA-IKSIEFARRGNCLLVN---TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT 416 (622)
Q Consensus 342 g~i~i~d~~~~~~~~~~-~~~~~~-i~~~~~s~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (622)
|.|++||+++++.+..+ ..|... +.+++|+|++++|+++ +.|+.|++||++.. ..++... ......
T Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~--------~~~~~~~-~~~~~~ 268 (402)
T 2aq5_A 198 KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL--------EEPLSLQ-ELDTSS 268 (402)
T ss_dssp SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC--------SSCSEEE-ECCCCS
T ss_pred CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc--------cCCceEE-eccCCC
Confidence 99999999999999988 678766 8999999999999998 78999999999841 1112222 222334
Q ss_pred eeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCee-EEEEecCC-CCceeEEEECCCCCEEEEEeCCcEEEeecCC
Q psy2110 417 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL-VKILHGTK-GELLLDVVWHPVRPIIASISSGVVSLWAQNQ 489 (622)
Q Consensus 417 ~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~-~~~~~~~~-~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~~ 489 (622)
.+.+++|+|++++|++++..|+.|++|++.+++. +..+..+. ...|.+++|+|++.++++ +++.+++|++..
T Consensus 269 ~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~ 342 (402)
T 2aq5_A 269 GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIARFYKLHE 342 (402)
T ss_dssp SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-GTEEEEEEEEET
T ss_pred ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-cceeEEEEEcCC
Confidence 5678899999999976554599999999998874 55555442 234999999999998764 477999999854
No 102
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=8.3e-33 Score=275.74 Aligned_cols=296 Identities=12% Similarity=0.135 Sum_probs=236.6
Q ss_pred ecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEEeCCCeEEEEEcCC-CceE-EEeccCCcCeeEEE
Q psy2110 169 DFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCNDGRIVLWDFLT-RGIA-KIISAHMHPVCSIS 243 (622)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~ 243 (622)
+....+.+..+..|. ..|.+++|+|+ |++|++|+.||.|++|++.+ +..+ ..+.+|...|++++
T Consensus 25 ~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~ 93 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPD-----------DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVC 93 (368)
T ss_dssp SSCTTCCEECSSCCS-----------SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEE
T ss_pred CCCCcceeEeccCCC-----------CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEE
Confidence 344444555555554 45999999999 69999999999999999997 5544 78889999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEE--eCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCC
Q psy2110 244 WSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQF--HPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSD 321 (622)
Q Consensus 244 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 321 (622)
|+|++++|++++.||.|++||+.+++......+...|.+++| +|++. ++++++.++.+++||+++...+..+..+.
T Consensus 94 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~- 171 (368)
T 3mmy_A 94 WSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPE- 171 (368)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSS-
T ss_pred ECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCC-
Confidence 999999999999999999999999999988889999999999 77665 68889999999999999888777777655
Q ss_pred ceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe--cCCCCEEEEEEcCCCCE----EEEEeCCCcEEEEeccccc
Q psy2110 322 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--ASTTAIKSIEFARRGNC----LLVNTGDRLIRVYNHQEVL 395 (622)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~----l~~~~~d~~i~i~d~~~~~ 395 (622)
.+.++ ...+..+++++.++.+.+|+++......... .+...+.++++.++... +++++.|+.|++|+++...
T Consensus 172 ~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 172 RCYCA--DVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp CEEEE--EEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred CceEE--EecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 33344 4445688999999999999998765443322 34455667777665554 9999999999999998411
Q ss_pred ccCCCCCCCcceeeeccccc----------eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEE
Q psy2110 396 NAGKDGDPEPIQKLQDLVNK----------TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDV 465 (622)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v 465 (622)
. ...+..+..+... ..+.+++|+|++++|++++. ||.|++||+.+++++..+.+|... |+++
T Consensus 250 ~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~-v~~~ 321 (368)
T 3mmy_A 250 P------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DGRFSFWDKDARTKLKTSEQLDQP-ISAC 321 (368)
T ss_dssp H------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEECCCCSSC-EEEE
T ss_pred c------cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc-CCeEEEEECCCCcEEEEecCCCCC-ceEE
Confidence 0 0233333333221 15789999999999999997 999999999999999999998876 9999
Q ss_pred EECCCCCEEEEEe-CCcEEEeec
Q psy2110 466 VWHPVRPIIASIS-SGVVSLWAQ 487 (622)
Q Consensus 466 ~~sp~~~~l~s~~-dg~v~iw~~ 487 (622)
+|+|++++|++++ |+..+.|++
T Consensus 322 ~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 322 CFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EECTTSSCEEEEECCCSTTCGGG
T ss_pred EECCCCCeEEEEecccccccccc
Confidence 9999999999998 876555554
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-33 Score=278.12 Aligned_cols=251 Identities=15% Similarity=0.245 Sum_probs=213.8
Q ss_pred CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecC--CcccccccccccCCCccccc
Q psy2110 114 GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL--TRGIAKIISAHMHPEFDGAL 191 (622)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~ 191 (622)
|+++..+.+|.+.| ++++|+|++++|++|+.||.|++|++. +++....+..|.
T Consensus 1 G~~~~~~~~h~~~v-----------------~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-------- 55 (379)
T 3jrp_A 1 GSMVVIANAHNELI-----------------HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE-------- 55 (379)
T ss_dssp ----CCEEECCCCE-----------------EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--------
T ss_pred CCccEEecCCcccE-----------------EEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCC--------
Confidence 45667788999988 599999999999999999999999998 555555666554
Q ss_pred ccccceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCC--CCEEEEEeCCCcEEEEEC
Q psy2110 192 DCISLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDV 265 (622)
Q Consensus 192 ~~~~~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~ 265 (622)
..|.+++|+++ +++|++++.||.|++||+.+++ ....+..|...|.+++|+|+ +.+|++++.|+.|++||+
T Consensus 56 ---~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~ 132 (379)
T 3jrp_A 56 ---GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 132 (379)
T ss_dssp ---SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred ---CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec
Confidence 35899999987 9999999999999999999987 67788889999999999999 999999999999999999
Q ss_pred CCCcE---EEEEeCCCCeEEEEEeCC------------CCeEEEEeeCCCcEEEEEecCCc----eeecccCCCCceEEE
Q psy2110 266 LTGEC---EQKYRFPSPILKVQFHPR------------NDHMFLVCPMRHAAVLVDTDGDH----QIVPIDEDSDLSIVA 326 (622)
Q Consensus 266 ~~~~~---~~~~~~~~~v~~~~~~~~------------~~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~ 326 (622)
.++.. .....+...|.+++|+|. ...++++++.++.+++||++... ....+..|...+.++
T Consensus 133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 133 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212 (379)
T ss_dssp CTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred CCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE
Confidence 98743 223348889999999995 34578899999999999998654 345677899999999
Q ss_pred EEeeC---CCEEEEEecCCeEEEEeCCCcc---EEEEE--ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 327 SFDRR---GQHVVTGNSKGKVLVLSCPALE---LKASF--KASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 327 ~~~~~---~~~l~~~~~dg~i~i~d~~~~~---~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
+|+|+ +++|++++.||.|++||+.++. ....+ ..|...|.+++|+|++++|++++.||.|++|++.
T Consensus 213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 99999 8999999999999999998864 22222 2488899999999999999999999999999987
No 104
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.5e-31 Score=269.10 Aligned_cols=279 Identities=10% Similarity=0.117 Sum_probs=234.1
Q ss_pred CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEe
Q psy2110 154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKII 232 (622)
Q Consensus 154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~ 232 (622)
.++++++.|+.|++||+.+++....+..+. .+.+++|+|+|++| ++++.++.|++||+.+++.+..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~------------~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~ 70 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS------------NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV 70 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS------------SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC------------CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE
Confidence 467888999999999999988877766542 37899999999977 56668999999999999998888
Q ss_pred ccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110 233 SAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH 311 (622)
Q Consensus 233 ~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 311 (622)
..+. .+.+++|+|++++|+.++ .++.|++||+.+++.+..+.....+.+++|+|+++.++++++.++.+++||+.+.+
T Consensus 71 ~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 149 (391)
T 1l0q_A 71 PAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA 149 (391)
T ss_dssp ECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 7665 899999999999886555 56999999999999999998888999999999999888899999999999999888
Q ss_pred eeecccCCCCceEEEEEeeCCCEE-EEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe---CCCcEE
Q psy2110 312 QIVPIDEDSDLSIVASFDRRGQHV-VTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT---GDRLIR 387 (622)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~ 387 (622)
.+..+..+ ..+..++|+|+++++ ++++.++.|++||+++++.+..+.. ...+.+++|+|++++|++++ .++.|+
T Consensus 150 ~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 150 VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEE
Confidence 77776655 446899999999988 5677889999999999988877764 46789999999999999887 689999
Q ss_pred EEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCC
Q psy2110 388 VYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKG 459 (622)
Q Consensus 388 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 459 (622)
+||+.. ...+..+..+ ..+.+++|+|+|++|++++..++.|++||+.+++.+..+..+..
T Consensus 228 ~~d~~~---------~~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 228 MIDTGT---------NKITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp EEETTT---------TEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEECCC---------CeEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 999983 2344444432 23567899999999865544589999999999999998877653
No 105
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.6e-32 Score=307.13 Aligned_cols=456 Identities=11% Similarity=0.071 Sum_probs=317.3
Q ss_pred CcceEEEEccCCcEEEeccCC------CeEEEEecccccee---------------------cccCceEEeecCC-----
Q psy2110 2 DLSIVASFDRRGQHVVTGNSK------GKVLVLSCPALELK---------------------ASRGNCLLVNTGD----- 49 (622)
Q Consensus 2 ~~V~~~~fspdg~~latg~~d------g~v~vwd~~~~~~~---------------------~~~~~~l~~~~~d----- 49 (622)
..|.+++|||||++||+++.+ ..|.+|++.+++.. +++|+.+++++.+
T Consensus 53 ~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~ 132 (1045)
T 1k32_A 53 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSS 132 (1045)
T ss_dssp SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTT
T ss_pred CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcc
Confidence 458899999999999987543 47999998664221 3466666666643
Q ss_pred -ceEEEeechhhhhcCCCCCCcc-c------------------------------------hhhhh-hccccceeEEEEc
Q psy2110 50 -RLIRVYNHQEVLNAGKDGDPEP-I------------------------------------QKLQD-LVNKTMWKKCCFS 90 (622)
Q Consensus 50 -~~i~~w~~~~~~~~~~~~~~~~-~------------------------------------~~~~~-~~~~~~~~~~~~s 90 (622)
..+.+|++.+............ . ..... ..+...+.++.|+
T Consensus 133 ~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s 212 (1045)
T 1k32_A 133 MTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV 212 (1045)
T ss_dssp CCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE
T ss_pred cceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEe
Confidence 3567777755432111111000 0 00000 1223445678888
Q ss_pred CCCCEEEEecCCCCeEEEEEcCC-CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy2110 91 GDGEYVCAGSARQHALYIWEKSV-GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD 169 (622)
Q Consensus 91 p~~~~l~~~~~~~~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 169 (622)
++ ..+++++ .++.+.||.+.. +.....+..|.. + ..++|+|||++|+++. ++.|++|+
T Consensus 213 ~d-~l~~~~~-~dg~~~l~~~~~~g~~~~~l~~~~~-~-----------------~~~~~SpDG~~la~~~-~~~i~~~d 271 (1045)
T 1k32_A 213 GH-RIYFITD-IDGFGQIYSTDLDGKDLRKHTSFTD-Y-----------------YPRHLNTDGRRILFSK-GGSIYIFN 271 (1045)
T ss_dssp TT-EEEEEEC-TTSSCEEEEEETTSCSCEECCCCCS-S-----------------CEEEEEESSSCEEEEE-TTEEEEEC
T ss_pred CC-EEEEEEe-ccCceEEEEEeCCCCcceEecCCCC-c-----------------ceeeEcCCCCEEEEEe-CCEEEEec
Confidence 88 4444444 458888998753 445556665553 2 3779999999999884 89999999
Q ss_pred cCCcccccccccccCCCcccccccccceEEEEEC-CCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCc-CeeEEEEcCC
Q psy2110 170 FLTRGIAKIISAHMHPEFDGALDCISLAVTCAFN-KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH-PVCSISWSRN 247 (622)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~ 247 (622)
+.... +..+..+..............+..++|+ |+|++|++++ ++.|.+|++.++... .+..|.. .+..++|+ |
T Consensus 272 ~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 272 PDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp TTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-S
T ss_pred CCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-C
Confidence 84433 2233332111111111112347789999 9999999887 789999999877654 4667777 89999999 9
Q ss_pred CCEEEEEeCCCcEE-EEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEE
Q psy2110 248 GYKIISASTDNNVC-IWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVA 326 (622)
Q Consensus 248 ~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 326 (622)
|+.|++++.++.+. +|++.+++......+...+..++|+|+++. +++++.++.+++||+.++........+...+..+
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGKPTVIERSREAMITDF 426 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred CCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCE-EEEECCCCeEEEEECCCCceEEeccCCCCCccce
Confidence 99999999888888 999988876655556678999999999985 5566788899999999887776666788888899
Q ss_pred EEeeCCCEEEEEecCC----------eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccc
Q psy2110 327 SFDRRGQHVVTGNSKG----------KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLN 396 (622)
Q Consensus 327 ~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 396 (622)
+|+|+|++|++++.++ .|++||+.+++ ...+..|...+.+++|+|+|++|++++.++...+|+......
T Consensus 427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~ 505 (1045)
T 1k32_A 427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF 505 (1045)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence 9999999998887654 89999999887 667778888899999999999999999888777776542111
Q ss_pred cCC----------C-CCC-----------------------CcceeeeccccceeeeeEEEcCCCCeEEE----------
Q psy2110 397 AGK----------D-GDP-----------------------EPIQKLQDLVNKTMWKKCCFSGDGEYVCA---------- 432 (622)
Q Consensus 397 ~~~----------~-~~~-----------------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~---------- 432 (622)
... . ... ..+..+. .....+..++++|||+++++
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~--~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~ 583 (1045)
T 1k32_A 506 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN--VDPGDYRMIIPLESSILIYSVPVHGEFAAY 583 (1045)
T ss_dssp ECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECS--CCCBCEEEEEECSSEEEEEECCCCCSHHHH
T ss_pred ccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcC--CCCCChhheEEcCCCeEEEEecccCccccc
Confidence 000 0 000 0011111 12234567899999987875
Q ss_pred --eeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEEeecCCcc
Q psy2110 433 --GSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVE 491 (622)
Q Consensus 433 --~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~~~~ 491 (622)
.......|++||+.+++.. .+. . .+..++|+|||+.|++++++.|++|++....
T Consensus 584 ~~~~~~~~~l~~~d~~~~~~~-~l~---~-~v~~~~~S~DG~~l~~~~~~~i~~~d~~~~~ 639 (1045)
T 1k32_A 584 YQGAPEKGVLLKYDVKTRKVT-EVK---N-NLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 639 (1045)
T ss_dssp HHCCCCCEEEEEEETTTCCEE-EEE---E-EEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred ccccCCCceEEEEECCCCcEE-Eee---c-CcceEEECCCCCEEEEEcCCcEEEEeCccCc
Confidence 1122557999999988754 333 2 2889999999999999986689999997544
No 106
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.7e-33 Score=273.71 Aligned_cols=284 Identities=15% Similarity=0.178 Sum_probs=214.7
Q ss_pred cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC----ceEEEEeccCcceeEEEEeecCccccccceeEEEEcC--CC
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG----NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK--RG 153 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--d~ 153 (622)
+...+.+++|+|++++|++++.+ |.|++||+.++ +....+.+|...| ++++|+| ++
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~d~ 71 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSD-QHIKVFKLDKDTSNWELSDSWRAHDSSI-----------------VAIDWASPEYG 71 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETT-SEEEEEEECSSSCCEEEEEEEECCSSCE-----------------EEEEECCGGGC
T ss_pred cccceeEEEEcCCCCEEEEeeCC-CeEEEEECCCCCCcceecceeccCCCcE-----------------EEEEEcCCCCC
Confidence 44568899999999999999975 99999999876 4677788999988 5999999 69
Q ss_pred CEEEEeeCCCcEEEEecCCccc---------ccccccccCCCcccccccccceEEEEECCC--CCEEEEEeCCCeEEEEE
Q psy2110 154 TLLAVGCNDGRIVLWDFLTRGI---------AKIISAHMHPEFDGALDCISLAVTCAFNKR--GTLLAVGCNDGRIVLWD 222 (622)
Q Consensus 154 ~~l~s~~~dg~i~vw~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~i~iwd 222 (622)
++|++++.||.|++||+.++.. ...+..+. ..|.+++|+|+ +++|++++.|+.|++||
T Consensus 72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd 140 (351)
T 3f3f_A 72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK-----------GSLYSVKFAPAHLGLKLACLGNDGILRLYD 140 (351)
T ss_dssp SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS-----------SCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC-----------CceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence 9999999999999999988632 33333332 45899999999 99999999999999999
Q ss_pred cCCCceEEEec-------------cCCcCeeEEEEcCC---CCEEEEEeCCCcEEEEECCCCcE--EEEEe-CCCCeEEE
Q psy2110 223 FLTRGIAKIIS-------------AHMHPVCSISWSRN---GYKIISASTDNNVCIWDVLTGEC--EQKYR-FPSPILKV 283 (622)
Q Consensus 223 ~~~~~~~~~~~-------------~~~~~v~~~~~s~~---~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~v~~~ 283 (622)
+.+++.+..+. .|...+.+++|+|+ +.+|++++.++.+.+|+...++. ...+. |...|.++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 220 (351)
T 3f3f_A 141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI 220 (351)
T ss_dssp CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence 98876544332 67889999999997 89999999999999998888775 34443 77899999
Q ss_pred EEeCCCC---eEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEE----ecCCeEEEEeCCCccEEE
Q psy2110 284 QFHPRND---HMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTG----NSKGKVLVLSCPALELKA 356 (622)
Q Consensus 284 ~~~~~~~---~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~ 356 (622)
+|+|++. .++++++.|+.+++||++....................++....+..+ .....+.+|+....+.+.
T Consensus 221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS 300 (351)
T ss_dssp EECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence 9999984 689999999999999998765444443333333333344443333333 334456677777778888
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 357 SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 357 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
.+.+|...|++++|+|++++|++++.|+.|++|++.
T Consensus 301 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp EECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence 999999999999999999999999999999999998
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5.5e-32 Score=276.34 Aligned_cols=276 Identities=12% Similarity=0.129 Sum_probs=232.2
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE-----EeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q psy2110 197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK-----IISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE 271 (622)
Q Consensus 197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 271 (622)
+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|+++++++++++.|+.|++||+.+++..
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 4578999977788888888999999999998877 45578889999999999999999999999999999999988
Q ss_pred EEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEe--------cCC
Q psy2110 272 QKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN--------SKG 342 (622)
Q Consensus 272 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~dg 342 (622)
..+. +...+.+++|+|+++.+++++..++.+++||+++...+..+..+ ..+..++|+|+|+++++++ .+|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg 283 (433)
T 3bws_A 205 ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGG 283 (433)
T ss_dssp EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCE
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCC
Confidence 8887 67789999999999988888888999999999988777766654 4588999999999999887 488
Q ss_pred eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeE
Q psy2110 343 KVLVLSCPALELKASFKASTTAIKSIEFARRGNCL-LVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKC 421 (622)
Q Consensus 343 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (622)
.|++||+.+++.+..+ .+...+.+++|+|+++.+ ++++.++.|++||+.. ...+..+. ....+.++
T Consensus 284 ~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---------~~~~~~~~---~~~~~~~~ 350 (433)
T 3bws_A 284 RLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---------KKVQKSIP---VFDKPNTI 350 (433)
T ss_dssp EEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT---------TEEEEEEE---CSSSEEEE
T ss_pred eEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC---------CcEEEEec---CCCCCCeE
Confidence 9999999998877765 344578999999999866 4557899999999983 23333332 23445688
Q ss_pred EEcCCCCeEEEeeCC--------------CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe--CCcEEEe
Q psy2110 422 CFSGDGEYVCAGSAR--------------QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS--SGVVSLW 485 (622)
Q Consensus 422 ~~spdg~~l~~~~~~--------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw 485 (622)
+|+|+|++|++++.. ||.|++||+.+++.+..+..+. . +.+++|+|++++|++++ |+.|++|
T Consensus 351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-~-~~~~~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-Q-PTGLDVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-S-EEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC-C-CceEEEcCCCCEEEEEECCCCeEEEE
Confidence 999999999888763 4699999999999999888754 3 99999999999988765 8999999
Q ss_pred ecC
Q psy2110 486 AQN 488 (622)
Q Consensus 486 ~~~ 488 (622)
+++
T Consensus 429 ~~~ 431 (433)
T 3bws_A 429 RRD 431 (433)
T ss_dssp EET
T ss_pred Eec
Confidence 985
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.1e-31 Score=268.14 Aligned_cols=332 Identities=10% Similarity=0.111 Sum_probs=257.4
Q ss_pred EEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE-EEeeCCCcEEEEecCCc
Q psy2110 95 YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTR 173 (622)
Q Consensus 95 ~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~s~~~dg~i~vw~~~~~ 173 (622)
.+++++. ++.|++||+.+++.+..+.+|.. + .+++|+|++++| ++++.|+.|++||+.++
T Consensus 4 l~vs~~~-d~~v~v~d~~~~~~~~~~~~~~~-~-----------------~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~ 64 (391)
T 1l0q_A 4 AYIANSE-SDNISVIDVTSNKVTATIPVGSN-P-----------------MGAVISPDGTKVYVANAHSNDVSIIDTATN 64 (391)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEEECSSS-E-----------------EEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEcCC-CCEEEEEECCCCeEEEEeecCCC-c-----------------ceEEECCCCCEEEEECCCCCeEEEEECCCC
Confidence 4556665 59999999999999999988865 3 499999999977 67778999999999998
Q ss_pred ccccccccccCCCcccccccccceEEEEECCCCCEEEEE-eCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEE-
Q psy2110 174 GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKI- 251 (622)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l- 251 (622)
+....+..+. .+.+++|+|++++|+++ +.++.|++||+.+++.+..+..| ..+.+++|+|++++|
T Consensus 65 ~~~~~~~~~~------------~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 65 NVIATVPAGS------------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY 131 (391)
T ss_dssp EEEEEEECSS------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred eEEEEEECCC------------CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence 8777665442 47899999999988655 46799999999999988887755 578999999999987
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC
Q psy2110 252 ISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR 331 (622)
Q Consensus 252 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (622)
++++.++.|++||+.+++....+.....+..++|+|+++.+++++..++.+++||+++......+.. ...+.+++|+|+
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~ 210 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPE 210 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTT
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCC
Confidence 6777799999999999999999888888899999999998888889999999999998876665553 457889999999
Q ss_pred CCEEEEEe---cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecccccccCCCCCCCcce
Q psy2110 332 GQHVVTGN---SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCL-LVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ 407 (622)
Q Consensus 332 ~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 407 (622)
++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|++++| ++++.|+.|++||+... ..+.
T Consensus 211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~---------~~~~ 280 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN---------TITA 280 (391)
T ss_dssp SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEE
T ss_pred CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC---------cEEE
Confidence 99999888 68999999999999988888764 57899999999988 45577999999999842 2222
Q ss_pred eeeccccc-------------eeeeeEEEcCCC----------CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeE
Q psy2110 408 KLQDLVNK-------------TMWKKCCFSGDG----------EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLD 464 (622)
Q Consensus 408 ~~~~~~~~-------------~~~~~~~~spdg----------~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 464 (622)
.+..+... .......|+.+. -.+...+. +..+++|++.+|... .+. -..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~-~~~~~~W~~~~g~~~----~~~---~~~ 352 (391)
T 1l0q_A 281 TMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSK-DATEWKWDFGDGSSS----KKQ---NPT 352 (391)
T ss_dssp EEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCB-SCSEEEEECSSSCEE----CSS---SCE
T ss_pred EEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCC-CceEEEEECCCCccc----CcC---CCe
Confidence 22111110 000111233221 12333343 778999999887641 222 223
Q ss_pred EEECCCCCEEEEE
Q psy2110 465 VVWHPVRPIIASI 477 (622)
Q Consensus 465 v~~sp~~~~l~s~ 477 (622)
..|+|.|.+.++.
T Consensus 353 ~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 353 HTYSETGIYTVRL 365 (391)
T ss_dssp ECCSSCEEEEEEE
T ss_pred EEeCCCceEEEEE
Confidence 6799999877654
No 109
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3e-32 Score=278.07 Aligned_cols=294 Identities=13% Similarity=0.229 Sum_probs=230.1
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL 224 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~ 224 (622)
++++| ++++|++|+.||.|++||+.+++....+..|. ..|.+++| ++++|++|+.||.|++||+.
T Consensus 137 ~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-----------~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 137 YCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT-----------GSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCS-----------SCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC-----------CcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 46665 79999999999999999999998888887765 34888888 78899999999999999999
Q ss_pred CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE---EEEe-CCCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110 225 TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE---QKYR-FPSPILKVQFHPRNDHMFLVCPMRH 300 (622)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~ 300 (622)
+++.+..+.+|...|.+++|+ +..|++++.||.|++||+.+++.. ..+. +...|.+++|. +. ++++++.++
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg 276 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGDR 276 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TT-EEEEEETTS
T ss_pred CCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CC-EEEEEeCCC
Confidence 999999999999999999997 459999999999999999988754 3333 77899999993 33 788999999
Q ss_pred cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy2110 301 AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN 380 (622)
Q Consensus 301 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 380 (622)
.+++||+++...+..+..|...+.++.+ +++++++|+.||.|++||+++++++..+.+|...|.+++| ++.+|+++
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 9999999999999999999999998888 5789999999999999999999999999999999999999 78899999
Q ss_pred eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCC
Q psy2110 381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE 460 (622)
Q Consensus 381 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 460 (622)
+.||.|++||+..............+..+..+ ...+.+++| ++++|++++. ||.|++||+.+...........
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~-- 425 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSSH-DDTILIWDFLNDPAAQAEPPRS-- 425 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECCS-SSEEEEEC----------------
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEeC-CCEEEEEECCCCCCcccCCCCC--
Confidence 99999999999753322111111134444433 345677888 7899999997 9999999998766544433222
Q ss_pred ceeEEEECC
Q psy2110 461 LLLDVVWHP 469 (622)
Q Consensus 461 ~v~~v~~sp 469 (622)
+...+.|.+
T Consensus 426 ~~~~~~~~~ 434 (435)
T 1p22_A 426 PSRTYTYIS 434 (435)
T ss_dssp ---------
T ss_pred Cccceeeec
Confidence 245555543
No 110
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.5e-33 Score=277.03 Aligned_cols=288 Identities=15% Similarity=0.239 Sum_probs=236.5
Q ss_pred EEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC---CCEEEEeeCCCcEEEEecCC-cccc-ccccccc
Q psy2110 109 WEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR---GTLLAVGCNDGRIVLWDFLT-RGIA-KIISAHM 183 (622)
Q Consensus 109 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d---~~~l~s~~~dg~i~vw~~~~-~~~~-~~~~~~~ 183 (622)
|+....+.+..+.+|.+.| ++++|+|+ |++|++|+.||.|++|++.+ +... ..+..|.
T Consensus 24 ~~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~ 86 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSI-----------------GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT 86 (368)
T ss_dssp CSSCTTCCEECSSCCSSCE-----------------EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECS
T ss_pred CCCCCcceeEeccCCCCce-----------------EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecccc
Confidence 4455667788889999998 59999999 59999999999999999987 4443 4454444
Q ss_pred CCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEE--cCCCCEEEEEeCCCcEE
Q psy2110 184 HPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISW--SRNGYKIISASTDNNVC 261 (622)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~d~~i~ 261 (622)
..|.+++|+|++++|++++.||.|++||+.+++... +..|...|.+++| ++++++|++++.|+.|+
T Consensus 87 -----------~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 154 (368)
T 3mmy_A 87 -----------GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK 154 (368)
T ss_dssp -----------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred -----------CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEE
Confidence 358999999999999999999999999999988766 5679999999999 89999999999999999
Q ss_pred EEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec--ccCCCCceEEEEEeeCCCE----E
Q psy2110 262 IWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP--IDEDSDLSIVASFDRRGQH----V 335 (622)
Q Consensus 262 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----l 335 (622)
+||+++++.+..+.....+.++.+.++ .++++..++.+.+|+++....... .........++++.++... +
T Consensus 155 vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 155 FWDTRSSNPMMVLQLPERCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp EECSSCSSCSEEEECSSCEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred EEECCCCcEEEEEecCCCceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence 999999999999998888888888764 577888899999999987543322 2233445566666666554 9
Q ss_pred EEEecCCeEEEEeCCCc---cEEEEEecCCC------------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCC
Q psy2110 336 VTGNSKGKVLVLSCPAL---ELKASFKASTT------------AIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKD 400 (622)
Q Consensus 336 ~~~~~dg~i~i~d~~~~---~~~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 400 (622)
++++.+|.|++|+++.. ..+..+..|.. .|++++|+|++++|++++.|+.|++||+.
T Consensus 232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~-------- 303 (368)
T 3mmy_A 232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD-------- 303 (368)
T ss_dssp EEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT--------
T ss_pred EEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC--------
Confidence 99999999999999887 56677777765 79999999999999999999999999998
Q ss_pred CCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeE
Q psy2110 401 GDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHAL 440 (622)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i 440 (622)
....+..+..+ ...+.+++|+|+|++|++++. |+..
T Consensus 304 -~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~s~-d~~~ 339 (368)
T 3mmy_A 304 -ARTKLKTSEQL--DQPISACCFNHNGNIFAYASS-YDWS 339 (368)
T ss_dssp -TTEEEEECCCC--SSCEEEEEECTTSSCEEEEEC-CCST
T ss_pred -CCcEEEEecCC--CCCceEEEECCCCCeEEEEec-cccc
Confidence 33444444432 456788999999999999997 5433
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=7.7e-33 Score=273.70 Aligned_cols=300 Identities=10% Similarity=0.075 Sum_probs=217.4
Q ss_pred EEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCc
Q psy2110 108 IWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEF 187 (622)
Q Consensus 108 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 187 (622)
+|++.+.+.+..+..|...| ++++|+|||++|++|+.++ +++|++.+++.......+
T Consensus 3 i~s~~~~~~~~~~~~h~~~V-----------------~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----- 59 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPV-----------------TDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----- 59 (355)
T ss_dssp ----------------CCCC-----------------CEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-----
T ss_pred cccccccCCccccccCCCce-----------------EEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-----
Confidence 56777778888888898888 5999999999999998775 789998876554332211
Q ss_pred ccccccccceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy2110 188 DGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL 266 (622)
Q Consensus 188 ~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~ 266 (622)
.+..+++.++++.+ ++++.++.|++||+.+++.+..+. |...|.+++|+++. ++++ .++.|++||+.
T Consensus 60 --------~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~ 127 (355)
T 3vu4_A 60 --------HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFG 127 (355)
T ss_dssp --------CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESS
T ss_pred --------CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECC
Confidence 24567888888877 457778999999999999988887 66799999998764 4444 37899999999
Q ss_pred CC-cEEEEEeCCCCeEEEEEeCCCCeEEEE-eeCCCcEEEEEecCCc----------------eeecccCCCCceEEEEE
Q psy2110 267 TG-ECEQKYRFPSPILKVQFHPRNDHMFLV-CPMRHAAVLVDTDGDH----------------QIVPIDEDSDLSIVASF 328 (622)
Q Consensus 267 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~----------------~~~~~~~~~~~~~~~~~ 328 (622)
++ +.+..+.. +...+++++ ..++++ ++.++.+++||+.+.. .+..+..|...|.+++|
T Consensus 128 ~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~ 203 (355)
T 3vu4_A 128 NPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL 203 (355)
T ss_dssp TTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEE
T ss_pred CCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEE
Confidence 88 55554444 445566777 444554 7899999999998754 26778899999999999
Q ss_pred eeCCCEEEEEecCCe-EEEEeCCCccEEEEEe-c-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCC----
Q psy2110 329 DRRGQHVVTGNSKGK-VLVLSCPALELKASFK-A-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDG---- 401 (622)
Q Consensus 329 ~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~-~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---- 401 (622)
+|+|++|++|+.||+ |++||+++++++..+. + |...|++++|+|++++|++++.|+.|++||+..........
T Consensus 204 s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~ 283 (355)
T 3vu4_A 204 NRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW 283 (355)
T ss_dssp CTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce
Confidence 999999999999998 9999999999999998 5 99999999999999999999999999999997421110000
Q ss_pred -------CCCcceeeeccc-cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC
Q psy2110 402 -------DPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV 447 (622)
Q Consensus 402 -------~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~ 447 (622)
.......+.... .......++|++||++|++++. ||.+++|++..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~-dg~~~~~~~~~ 336 (355)
T 3vu4_A 284 INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH-TRMIETFKVVF 336 (355)
T ss_dssp EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETT-TTEEEEEEEEE
T ss_pred eeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeC-CCeEEEEEEEc
Confidence 000000000000 1112256899999999999997 99999998754
No 112
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.5e-33 Score=274.24 Aligned_cols=242 Identities=19% Similarity=0.289 Sum_probs=200.9
Q ss_pred cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc--eEEEEeccCcceeEEEEeecCccccccceeEEEEcC--CCCE
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN--LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK--RGTL 155 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--d~~~ 155 (622)
+...+.+++|+|+|++||+|+.| ++|+|||+.+++ .+..+.+|.+.| ++++|++ ++++
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D-~~v~lwd~~~~~~~~~~~l~gH~~~V-----------------~~v~~~~~~~~~~ 73 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSD-RSVKIFDVRNGGQILIADLRGHEGPV-----------------WQVAWAHPMYGNI 73 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETT-TEEEEEEEETTEEEEEEEEECCSSCE-----------------EEEEECCGGGSSC
T ss_pred ccCeEEEeeEcCCCCEEEEEeCC-CeEEEEEecCCCcEEEEEEcCCCccE-----------------EEEEeCCCCCCCE
Confidence 44567899999999999999975 999999998775 467899999998 5999986 4899
Q ss_pred EEEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCce---
Q psy2110 156 LAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRGI--- 228 (622)
Q Consensus 156 l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~~--- 228 (622)
|++|+.|++|++||+.++. ....+..|. ..|.+++|+|+ +.+|++|+.|+.|++|++.++..
T Consensus 74 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----------~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 74 LASCSYDRKVIIWREENGTWEKSHEHAGHD-----------SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp EEEEETTSCEEEECCSSSCCCEEEEECCCS-----------SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred EEEEECCCEEEEEECCCCcceEEEEccCCC-----------CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 9999999999999998864 233333343 35889999998 78999999999999999987632
Q ss_pred EEEeccCCcCeeEEEEcCC-----------------CCEEEEEeCCCcEEEEECCCC---cEEEEEe-CCCCeEEEEEeC
Q psy2110 229 AKIISAHMHPVCSISWSRN-----------------GYKIISASTDNNVCIWDVLTG---ECEQKYR-FPSPILKVQFHP 287 (622)
Q Consensus 229 ~~~~~~~~~~v~~~~~s~~-----------------~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~~v~~~~~~~ 287 (622)
...+.+|...|.+++|+|+ +++|++++.|+.|++||++.+ ++...+. |...|.+++|+|
T Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp 222 (316)
T 3bg1_A 143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP 222 (316)
T ss_dssp CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC
T ss_pred eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC
Confidence 3456789999999999997 468999999999999999765 3444454 788999999999
Q ss_pred CC---CeEEEEeeCCCcEEEEEecCCc----eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110 288 RN---DHMFLVCPMRHAAVLVDTDGDH----QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP 350 (622)
Q Consensus 288 ~~---~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 350 (622)
++ ..++++++.|+.+++|++.... ....+..|...+.+++|+|++++|++++.||.|++|+..
T Consensus 223 ~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 223 SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 86 3589999999999999997621 223345678899999999999999999999999999975
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-32 Score=278.49 Aligned_cols=295 Identities=12% Similarity=0.043 Sum_probs=233.1
Q ss_pred ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc---eEEEEeccCcceeEEEE-------------e-------------
Q psy2110 83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN---LVKILHGTKGELLLDVV-------------E------------- 133 (622)
Q Consensus 83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~-------------~------------- 133 (622)
.+.+++|+|+|++|+++. ++.|++||+.+|+ .+..+..+......... .
T Consensus 6 p~~~v~~s~dg~~l~~~~--~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAII--KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCEEEECSSSSEEEEEE--TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cEEEEEecCCCCEEEEEe--CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 456899999999777775 3799999999999 77777655431000000 0
Q ss_pred -----------ecCccccccceeEEEEcCCCCEE-EEeeCCCcEEEEecC--CcccccccccccCCCcccccccccceEE
Q psy2110 134 -----------FDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFL--TRGIAKIISAHMHPEFDGALDCISLAVT 199 (622)
Q Consensus 134 -----------~~~~~~~~~~v~~~~~s~d~~~l-~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 199 (622)
-.........|++++|+|++++| ++++.||.|++|++. +++....+..+... ..|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---------~~v~~ 154 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS---------KRPNA 154 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS---------SCEEE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC---------CCceE
Confidence 00000112257899999999996 899999999999999 77777776543222 35899
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCceEE----EeccCCcCeeEEEEcCC---CCEEEEEeCCCcEEEEECCCCcEEE
Q psy2110 200 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK----IISAHMHPVCSISWSRN---GYKIISASTDNNVCIWDVLTGECEQ 272 (622)
Q Consensus 200 ~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~s~~~d~~i~iwd~~~~~~~~ 272 (622)
++|+|++++|++++.+|.|++|++.++.... .+.+|...|++++|+|+ +++|++++.|+.|++||+.+++.+.
T Consensus 155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 9999999999999999999999998876544 77889999999999999 9999999999999999999998887
Q ss_pred EEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc-------------------------CCCCceEE
Q psy2110 273 KYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID-------------------------EDSDLSIV 325 (622)
Q Consensus 273 ~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------------------------~~~~~~~~ 325 (622)
.+. |...|.+++|+ ++. ++++++.|+.|++||+.++..+..+. .....+..
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp EECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred eeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 743 78899999999 666 67888999999999999887665554 22356889
Q ss_pred EEEeeCCCEEEEEe-cCCeEEEEeC--CCc---cEEEEEecCCCCEEEEEEcCCCCEEEEE-eC------CCcEEEEecc
Q psy2110 326 ASFDRRGQHVVTGN-SKGKVLVLSC--PAL---ELKASFKASTTAIKSIEFARRGNCLLVN-TG------DRLIRVYNHQ 392 (622)
Q Consensus 326 ~~~~~~~~~l~~~~-~dg~i~i~d~--~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~------d~~i~i~d~~ 392 (622)
++|+|+++++++++ .++.|++|++ .++ +.+..+..+ ..|.+++|+|++ .+++. +. +..|.+|.+.
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 99999999999998 8999999999 555 677778888 889999999964 44444 32 4568999876
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.9e-33 Score=280.90 Aligned_cols=277 Identities=15% Similarity=0.230 Sum_probs=229.0
Q ss_pred EEEEcCCCCEEEEecCCCCeEEEEEcCCC----ceEEEEeccCcceeEEEEeecCccccccceeEEEEcC-CCCEEEEee
Q psy2110 86 KCCFSGDGEYVCAGSARQHALYIWEKSVG----NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK-RGTLLAVGC 160 (622)
Q Consensus 86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~ 160 (622)
.++++|+...+++.+..+|.|+||++... ..+..+.+|.+.| ++++|+| ++++|++|+
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V-----------------~~~~~~p~~~~~l~s~s 101 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPV-----------------LDIAWCPHNDNVIASGS 101 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCE-----------------EEEEECTTCTTEEEEEE
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCE-----------------EEEEeCCCCCCEEEEEe
Confidence 58999988777654334599999999654 2345677898888 5999999 999999999
Q ss_pred CCCcEEEEecCCcc-------cccccccccCCCcccccccccceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110 161 NDGRIVLWDFLTRG-------IAKIISAHMHPEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGIAKII 232 (622)
Q Consensus 161 ~dg~i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iwd~~~~~~~~~~ 232 (622)
.||.|++|++.++. ....+..|. ..|.+++|+|++ ++|++++.|+.|++||+.+++.+..+
T Consensus 102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHT-----------KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170 (402)
T ss_dssp TTSEEEEEECCTTCCSSCBCSCSEEEECCS-----------SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCeEEEEEccCCCCccccCCceEEecCCC-----------CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence 99999999999873 344444443 358999999998 69999999999999999999999999
Q ss_pred --ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE-e-CCCC-eEEEEEeCCCCeEEEEe---eCCCcEEE
Q psy2110 233 --SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY-R-FPSP-ILKVQFHPRNDHMFLVC---PMRHAAVL 304 (622)
Q Consensus 233 --~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~-v~~~~~~~~~~~~~~~~---~~~~~i~~ 304 (622)
..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ . +... +.++.|+|++. +++++ +.++.+++
T Consensus 171 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVAL 249 (402)
T ss_dssp CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEE
T ss_pred ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEE
Confidence 889999999999999999999999999999999999998888 3 5444 89999999876 56666 68999999
Q ss_pred EEecCCce-eec-ccCCCCceEEEEEeeCCCEEEE-EecCCeEEEEeCCCccE-EEEEec--CCCCEEEEEEcCCCCEEE
Q psy2110 305 VDTDGDHQ-IVP-IDEDSDLSIVASFDRRGQHVVT-GNSKGKVLVLSCPALEL-KASFKA--STTAIKSIEFARRGNCLL 378 (622)
Q Consensus 305 ~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~-~~~~~~--~~~~i~~~~~s~~~~~l~ 378 (622)
||+++... ... ...+...+..++|+|+++++++ |+.||.|++|++.+++. +..+.. |...|.+++|+|++.+++
T Consensus 250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccce
Confidence 99987543 222 2245677899999999999975 55799999999998873 444443 458999999999999876
Q ss_pred EEeCCCcEEEEeccc
Q psy2110 379 VNTGDRLIRVYNHQE 393 (622)
Q Consensus 379 ~~~~d~~i~i~d~~~ 393 (622)
+ .++.+++|++..
T Consensus 330 s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 330 N--KCEIARFYKLHE 342 (402)
T ss_dssp G--GTEEEEEEEEET
T ss_pred e--cceeEEEEEcCC
Confidence 4 567999999873
No 115
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.3e-31 Score=302.43 Aligned_cols=376 Identities=13% Similarity=0.115 Sum_probs=274.3
Q ss_pred cceeEEEEcCCCCEEEEecCC-----CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110 82 TMWKKCCFSGDGEYVCAGSAR-----QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL 156 (622)
Q Consensus 82 ~~~~~~~~sp~~~~l~~~~~~-----~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 156 (622)
..+.+++|||||++||+++.+ +..|++|++.+++ ...+..|...+. + ....+..++|+|||+++
T Consensus 53 ~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~-------~---~~~~~~~~~~SpDg~ll 121 (1045)
T 1k32_A 53 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKST-------G---RRMFTDVAGFDPDGNLI 121 (1045)
T ss_dssp SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEE-------T---TEECSEEEEECTTCCEE
T ss_pred CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCccc-------c---cccccccccCCCCCEEE
Confidence 345689999999999988643 2479999998776 567777776550 0 00011489999999977
Q ss_pred EEeeCC------CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC------------CCeE
Q psy2110 157 AVGCND------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN------------DGRI 218 (622)
Q Consensus 157 ~s~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------------dg~i 218 (622)
++++.+ ..|.+|++.++........+ ...++|+| | ++++++. +...
T Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~--------------~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~ 185 (1045)
T 1k32_A 122 ISTDAMQPFSSMTCLYRVENDGINFVPLNLGP--------------ATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRG 185 (1045)
T ss_dssp EEECTTSSSTTCCEEEEEEGGGTEEEECCSCS--------------CSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCC
T ss_pred EEECCcCCCcccceEEEEECCCCCeEEecCCC--------------cceeeeCC-C-EEEEeccCCCccccccccCCCcC
Confidence 777754 35778888776543322211 23466999 8 8888753 2345
Q ss_pred EEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCeEEEEEeCCCCeEEEEee
Q psy2110 219 VLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT-GECEQKYRFPSPILKVQFHPRNDHMFLVCP 297 (622)
Q Consensus 219 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 297 (622)
.+|....+.....+.+|...+.++.|+++ ..+++++.++.+.||.+.. +.....+.....+..++|+|+++.+++.
T Consensus 186 ~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-- 262 (1045)
T 1k32_A 186 KIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-- 262 (1045)
T ss_dssp EEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE--
T ss_pred CEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE--
Confidence 66654443555667899999999999988 5666777788888987653 3334444444456778999999876655
Q ss_pred CCCcEEEEEecCCceeecccC-----------CCCceEEEEEe-eCCCEEEEEecCCeEEEEeCCCccEEEEEecCCC-C
Q psy2110 298 MRHAAVLVDTDGDHQIVPIDE-----------DSDLSIVASFD-RRGQHVVTGNSKGKVLVLSCPALELKASFKASTT-A 364 (622)
Q Consensus 298 ~~~~i~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~ 364 (622)
.++.+++|++... .+..+.. +...+..++|+ |+|+++++++ ++.+++|++.+++... +..|.. .
T Consensus 263 ~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~ 339 (1045)
T 1k32_A 263 KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIR 339 (1045)
T ss_dssp ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEE
T ss_pred eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcce
Confidence 4889999998433 3334333 22357899999 9999998887 7899999998877554 566667 8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEE-EEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEE
Q psy2110 365 IKSIEFARRGNCLLVNTGDRLIR-VYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIW 443 (622)
Q Consensus 365 i~~~~~s~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iw 443 (622)
+..++|+ +|+.|++++.+..+. +|++.. .....+. .....+..++|||||++|++++. ++.|++|
T Consensus 340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~----------~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~-~~~v~~~ 405 (1045)
T 1k32_A 340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRT----------GKAEKFE--ENLGNVFAMGVDRNGKFAVVAND-RFEIMTV 405 (1045)
T ss_dssp EEEECSS-SEEEEEEEETTEEEEEEEETTT----------CCEEECC--CCCCSEEEEEECTTSSEEEEEET-TSEEEEE
T ss_pred EEeeeEc-CCCeEEEEECCCceEEEEECCC----------CCceEec--CCccceeeeEECCCCCEEEEECC-CCeEEEE
Confidence 9999999 999999999888888 888763 1122222 12244567899999999999987 8899999
Q ss_pred ECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CC----------cEEEeecCCccc-----------ccccCCCCc
Q psy2110 444 EKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SG----------VVSLWAQNQVEN-----------WSAFAPDFK 501 (622)
Q Consensus 444 d~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg----------~v~iw~~~~~~~-----------~~~~s~~~~ 501 (622)
|+.+++....+.+|.+. +.+++|+|+|++|++++ ++ .|++|++.+... ..+|+|||+
T Consensus 406 d~~tg~~~~~~~~~~~~-v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~ 484 (1045)
T 1k32_A 406 DLETGKPTVIERSREAM-ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK 484 (1045)
T ss_dssp ETTTCCEEEEEECSSSC-CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSC
T ss_pred ECCCCceEEeccCCCCC-ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCC
Confidence 99999988888788776 89999999999998887 54 899999874321 127999999
Q ss_pred eecc
Q psy2110 502 ELDE 505 (622)
Q Consensus 502 ~l~~ 505 (622)
.++.
T Consensus 485 ~l~~ 488 (1045)
T 1k32_A 485 NLYY 488 (1045)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7754
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-31 Score=274.07 Aligned_cols=278 Identities=12% Similarity=0.110 Sum_probs=227.7
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eEEEecc--------------------------------------
Q psy2110 196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---IAKIISA-------------------------------------- 234 (622)
Q Consensus 196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-------------------------------------- 234 (622)
.+.+++|+++|++|+++ .++.|++||+.+++ .+..+..
T Consensus 6 p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred cEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 46789999999977665 57899999999988 5555543
Q ss_pred ----------------CCcCeeEEEEcCCCCEE-EEEeCCCcEEEEECC--CCcEEEEE---eCCCCeEEEEEeCCCCeE
Q psy2110 235 ----------------HMHPVCSISWSRNGYKI-ISASTDNNVCIWDVL--TGECEQKY---RFPSPILKVQFHPRNDHM 292 (622)
Q Consensus 235 ----------------~~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~---~~~~~v~~~~~~~~~~~~ 292 (622)
|.+.|++++|+|++++| ++++.||.|++||+. +++.+..+ .+...+.+++|+|++. +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~ 163 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT-T 163 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS-E
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC-E
Confidence 33379999999999996 888899999999999 88888777 4678999999999987 5
Q ss_pred EEEeeCCCcEEEEEecCCceee----cccCCCCceEEEEEeeC---CCEEEEEecCCeEEEEeCCCccEEEE-EecCCCC
Q psy2110 293 FLVCPMRHAAVLVDTDGDHQIV----PIDEDSDLSIVASFDRR---GQHVVTGNSKGKVLVLSCPALELKAS-FKASTTA 364 (622)
Q Consensus 293 ~~~~~~~~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~ 364 (622)
+++++.++.+++|++.+..... .+..|...+.+++|+|+ +++|++++.|+.|++||+++++.+.. +.+|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 6778889999999998765443 67788999999999999 99999999999999999999998877 5589999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecc-----------------------ccceeeeeE
Q psy2110 365 IKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-----------------------VNKTMWKKC 421 (622)
Q Consensus 365 i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~ 421 (622)
|.+++|+ ++++|++++.|+.|++||+.. ...+..+... .....+..+
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKT---------GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTT---------CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCC---------CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 9999999 999999999999999999983 2333333211 122456788
Q ss_pred EEcCCCCeEEEeeCCCCeEEEEEC--CCC---eeEEEEecCCCCceeEEEECCCCCEEEEEe--C------CcEEEeecC
Q psy2110 422 CFSGDGEYVCAGSARQHALYIWEK--SVG---NLVKILHGTKGELLLDVVWHPVRPIIASIS--S------GVVSLWAQN 488 (622)
Q Consensus 422 ~~spdg~~l~~~~~~d~~i~iwd~--~~~---~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--d------g~v~iw~~~ 488 (622)
+|+|++++|++++..++.|+||++ .++ +.+..+.+| +. |.+++|+|++ ++++++ + ..|.+|.+.
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~-v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YN-VISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SC-EEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cc-eEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 999999999999845899999999 666 777888888 44 9999999954 444443 2 347888874
No 117
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-31 Score=267.77 Aligned_cols=249 Identities=17% Similarity=0.281 Sum_probs=210.1
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEcC--CCceEEEeccCCcCeeEEEEcCC--CCEEEEEeCCCcEEEEECCCCc-
Q psy2110 195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFL--TRGIAKIISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDVLTGE- 269 (622)
Q Consensus 195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~- 269 (622)
..|.+++|+|++++|++++.||.|++|++. +++....+.+|...|++++|+++ +++|++++.||.|++||+.+++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 91 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 91 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence 359999999999999999999999999998 56677889999999999999987 9999999999999999999987
Q ss_pred -EEEEEe-CCCCeEEEEEeCCC-CeEEEEeeCCCcEEEEEecCC--ceeecccCCCCceEEEEEee-------------C
Q psy2110 270 -CEQKYR-FPSPILKVQFHPRN-DHMFLVCPMRHAAVLVDTDGD--HQIVPIDEDSDLSIVASFDR-------------R 331 (622)
Q Consensus 270 -~~~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~-------------~ 331 (622)
....+. +...|.+++|+|+. ..++++++.++.+++||++.. .....+..|...+.+++|+| +
T Consensus 92 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T 3jrp_A 92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 171 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CT
T ss_pred eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCC
Confidence 455554 78899999999983 347889999999999999876 34456678889999999999 6
Q ss_pred CCEEEEEecCCeEEEEeCCCcc----EEEEEecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecccccccCCCCCCC
Q psy2110 332 GQHVVTGNSKGKVLVLSCPALE----LKASFKASTTAIKSIEFARR---GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPE 404 (622)
Q Consensus 332 ~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 404 (622)
+.++++++.||.|++||++++. +...+..|...|.+++|+|+ +++|++++.|+.|++||+.... ...
T Consensus 172 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~ 245 (379)
T 3jrp_A 172 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ------GPW 245 (379)
T ss_dssp TCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT------SCC
T ss_pred CCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC------ccc
Confidence 9999999999999999997654 55677889999999999999 8999999999999999998411 011
Q ss_pred cceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCee
Q psy2110 405 PIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL 450 (622)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~ 450 (622)
....+........+.+++|+|+|++|++++. ||.|++|++..+..
T Consensus 246 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 246 KKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEGK 290 (379)
T ss_dssp EEEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEEETTE
T ss_pred eeeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCCCCCc
Confidence 1122222234456788999999999999997 99999999885543
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.5e-31 Score=270.52 Aligned_cols=239 Identities=13% Similarity=0.241 Sum_probs=208.1
Q ss_pred eeEEEEcCC-CCEEEEeeCCCcEEEEecCC----------cccccccccccCCCcccccccccceEEEEECCCCC-EEEE
Q psy2110 144 AVTCAFNKR-GTLLAVGCNDGRIVLWDFLT----------RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAV 211 (622)
Q Consensus 144 v~~~~~s~d-~~~l~s~~~dg~i~vw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~ 211 (622)
|++++|+|+ +.+||+++.||.|++|++.. ......+..|. ..+.+++|+|++. +|++
T Consensus 131 v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ-----------KEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS-----------SCCCCEEECTTSTTEEEE
T ss_pred EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC-----------CCeEEEEeCCCCCCeEEE
Confidence 369999997 67999999999999999986 34444444443 3478999999998 9999
Q ss_pred EeCCCeEEEEEcCCCce-------EEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCC---cEEEEEe-CCCC
Q psy2110 212 GCNDGRIVLWDFLTRGI-------AKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTG---ECEQKYR-FPSP 279 (622)
Q Consensus 212 ~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~~ 279 (622)
|+.||.|++|++.++.. ...+.+|...|.+++|+| ++..|++++.|+.|++||++++ +....+. +...
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 99999999999987322 456778999999999999 7789999999999999999987 4555554 7889
Q ss_pred eEEEEEeCCCCeEEEEeeCCCcEEEEEecC-CceeecccCCCCceEEEEEeeCCC-EEEEEecCCeEEEEeCCC------
Q psy2110 280 ILKVQFHPRNDHMFLVCPMRHAAVLVDTDG-DHQIVPIDEDSDLSIVASFDRRGQ-HVVTGNSKGKVLVLSCPA------ 351 (622)
Q Consensus 280 v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~------ 351 (622)
|.+++|+|++..++++++.++.|++||++. ...+..+..|...+.+++|+|+++ ++++++.||.|++||+..
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 999999999998999999999999999997 566778888999999999999995 689999999999999986
Q ss_pred --------ccEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeccc
Q psy2110 352 --------LELKASFKASTTAIKSIEFARRGN-CLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 352 --------~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~i~d~~~ 393 (622)
.+++..+.+|...|++++|+|+++ +|++++.|+.|++|++..
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 367888889999999999999999 899999999999999985
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.8e-31 Score=261.52 Aligned_cols=290 Identities=13% Similarity=0.149 Sum_probs=213.9
Q ss_pred EEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcC
Q psy2110 167 LWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSR 246 (622)
Q Consensus 167 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 246 (622)
+|.+.+...+.....|. ..|.+++|+|+|++|++|+.++ +++|++.+++....... ..+..+++.+
T Consensus 3 i~s~~~~~~~~~~~~h~-----------~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~ 68 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVS-----------NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLH 68 (355)
T ss_dssp ----------------C-----------CCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECT
T ss_pred cccccccCCccccccCC-----------CceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcC
Confidence 44555554544444443 3589999999999999998665 78999988766554432 3578889999
Q ss_pred CCCEE-EEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-ceeecccCCCCceE
Q psy2110 247 NGYKI-ISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-HQIVPIDEDSDLSI 324 (622)
Q Consensus 247 ~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~ 324 (622)
+++.+ ++++.|++|++||+.+++++..+.+...|.++.++++. ++++ .++.+++||+.+. +.+..+.. ...
T Consensus 69 ~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 69 RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp TSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred CCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc---CCc
Confidence 88877 46677899999999999999999999999999999863 2333 4788999999887 55555444 344
Q ss_pred EEEEeeCCCEEEE--EecCCeEEEEeCCCcc----------------EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCc-
Q psy2110 325 VASFDRRGQHVVT--GNSKGKVLVLSCPALE----------------LKASFKASTTAIKSIEFARRGNCLLVNTGDRL- 385 (622)
Q Consensus 325 ~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~- 385 (622)
.+++++ .++++ |+.+|.|++||+.+++ .+..+.+|...|++++|+|+|++|++++.|++
T Consensus 142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~ 219 (355)
T 3vu4_A 142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI 219 (355)
T ss_dssp EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE
Confidence 556666 56665 6889999999999765 26788999999999999999999999999998
Q ss_pred EEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCee--EEEE---------
Q psy2110 386 IRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL--VKIL--------- 454 (622)
Q Consensus 386 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~--~~~~--------- 454 (622)
|++||+. ....+..+....+...+.+++|+|+|++|++++. |+.|+|||+..+.. ...+
T Consensus 220 v~iwd~~---------~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
T 3vu4_A 220 IRVFKTE---------DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD-KWTLHVFEIFNDQDNKRHALKGWINMKYF 289 (355)
T ss_dssp EEEEETT---------TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET-TCEEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred EEEEECC---------CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC-CCEEEEEEccCCCCcccccccceeecccc
Confidence 9999998 3455566653223457789999999999999997 99999999976531 1111
Q ss_pred -----------ecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110 455 -----------HGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ 489 (622)
Q Consensus 455 -----------~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~ 489 (622)
..........++|+|+++.|++++ ||.+++|++..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 290 QSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred ccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 111111246799999999999999 99999999853
No 120
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=1.4e-30 Score=270.66 Aligned_cols=330 Identities=12% Similarity=0.087 Sum_probs=262.2
Q ss_pred EEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEE
Q psy2110 88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVL 167 (622)
Q Consensus 88 ~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 167 (622)
+|+|++.++++++.+ ++|.+||..+++++.++..+.. + +.++|+|||++|++++.|++|++
T Consensus 144 ~~~p~~~~~vs~~~d-~~V~v~D~~t~~~~~~i~~g~~-~-----------------~~v~~spdg~~l~v~~~d~~V~v 204 (543)
T 1nir_A 144 DLDLPNLFSVTLRDA-GQIALVDGDSKKIVKVIDTGYA-V-----------------HISRMSASGRYLLVIGRDARIDM 204 (543)
T ss_dssp CCCGGGEEEEEEGGG-TEEEEEETTTCCEEEEEECSTT-E-----------------EEEEECTTSCEEEEEETTSEEEE
T ss_pred ccCCCCEEEEEEcCC-CeEEEEECCCceEEEEEecCcc-c-----------------ceEEECCCCCEEEEECCCCeEEE
Confidence 589999888888764 9999999999999999884433 4 58999999999999999999999
Q ss_pred Eec--CCcccccccccccCCCcccccccccceEEEEECC----CCCEEEEEeC-CCeEEEEEcCCCceEEEeccC-----
Q psy2110 168 WDF--LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK----RGTLLAVGCN-DGRIVLWDFLTRGIAKIISAH----- 235 (622)
Q Consensus 168 w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~----- 235 (622)
||+ .+++.+..+... ..+..++|+| +|++|++++. +++|.+||..+++++..+..+
T Consensus 205 ~D~~~~t~~~~~~i~~g------------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~ 272 (543)
T 1nir_A 205 IDLWAKEPTKVAEIKIG------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 272 (543)
T ss_dssp EETTSSSCEEEEEEECC------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred EECcCCCCcEEEEEecC------------CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence 999 777766665532 2468899999 9999999874 899999999999998887642
Q ss_pred -----C-cCeeEEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEE--EEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEE
Q psy2110 236 -----M-HPVCSISWSRNGYK-IISASTDNNVCIWDVLTGECEQ--KYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVD 306 (622)
Q Consensus 236 -----~-~~v~~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d 306 (622)
. ..+.++.+++++.. +++...++.|.+||+.+.+.+. .+.+...+..+.|+|+++++++++..++.|.+||
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 2 26889999997765 4556678999999998876544 5556677888999999998888888899999999
Q ss_pred ecCCceeecccC----CCCceEEEEEeeC-CCEEEEEe-cCCeEEEEeCCC-------ccEEEEEecCCCCEEEEEEcCC
Q psy2110 307 TDGDHQIVPIDE----DSDLSIVASFDRR-GQHVVTGN-SKGKVLVLSCPA-------LELKASFKASTTAIKSIEFARR 373 (622)
Q Consensus 307 ~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~s~~ 373 (622)
..+++.+..+.. |......+ ++|+ +..++++. .+++|.+||+.+ +++++++..|...+..++++|+
T Consensus 353 ~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pd 431 (543)
T 1nir_A 353 SKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK 431 (543)
T ss_dssp TTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred CCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCC
Confidence 999877766553 43333232 4677 55566665 579999999988 8999999999888889999999
Q ss_pred CCEEEEEe-------CCCcEEEEecccccccCCCCCCCcc-eeeec------cccceeeeeEEEcCCCCeEEEeeC----
Q psy2110 374 GNCLLVNT-------GDRLIRVYNHQEVLNAGKDGDPEPI-QKLQD------LVNKTMWKKCCFSGDGEYVCAGSA---- 435 (622)
Q Consensus 374 ~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~spdg~~l~~~~~---- 435 (622)
+++|++++ .+++|.+||+.+. ... ..+.. ......+..+.|+|+|++|+++..
T Consensus 432 g~~l~v~~~~~~~~~~~~~v~v~d~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~ 502 (543)
T 1nir_A 432 SSHLYVDTTFNPDARISQSVAVFDLKNL---------DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKN 502 (543)
T ss_dssp CCEEEECCTTCSSHHHHTCEEEEETTCT---------TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTT
T ss_pred CCcEEEecCCCCCcccCceEEEEECCCC---------CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCC
Confidence 99999987 2679999999842 222 22211 112345667899999999987632
Q ss_pred CCCeEEEEECCCCeeEEEEecCC
Q psy2110 436 RQHALYIWEKSVGNLVKILHGTK 458 (622)
Q Consensus 436 ~d~~i~iwd~~~~~~~~~~~~~~ 458 (622)
.++.|.|||.+++++++.++.+.
T Consensus 503 ~~~~i~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 503 DSSALVVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp SCCEEEEEETTTTEEEEEECCTT
T ss_pred CCCeEEEEECCCceEEEeecCCC
Confidence 37899999999999999998654
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.1e-32 Score=274.61 Aligned_cols=273 Identities=14% Similarity=0.088 Sum_probs=185.4
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCcccc-----cccccccCCCcccccccccceEEEEECC--------CCCEEEEE
Q psy2110 146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA-----KIISAHMHPEFDGALDCISLAVTCAFNK--------RGTLLAVG 212 (622)
Q Consensus 146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~--------~g~~l~~~ 212 (622)
...+++++.+|++++.|++|+|||..++... ..+.+|. ..|.+++|+| ++++||++
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~-----------~~v~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH-----------NFVNDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS-----------SCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC-----------CceEEEEEccccccccCCCCCEEEEE
Confidence 5567778889999999999999999887543 2344444 4599999998 88999999
Q ss_pred eCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeC-C----CCeEEEEEe
Q psy2110 213 CNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKYRF-P----SPILKVQFH 286 (622)
Q Consensus 213 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~-~----~~v~~~~~~ 286 (622)
+.|++|+|||+.++..+..+..|...+.+++|+|++. +|++++.|++|++||+++++....... . ..+......
T Consensus 163 s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 163 GDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL 242 (393)
T ss_dssp ETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred ECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence 9999999999999888888888999999999999874 799999999999999999876654431 1 111111111
Q ss_pred CCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEe-eCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCE
Q psy2110 287 PRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFD-RRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAI 365 (622)
Q Consensus 287 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 365 (622)
+.. .......|...+.++.|+ ++++.+++++.|+.+++||+..++....+..|...+
T Consensus 243 ~~~----------------------~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~ 300 (393)
T 4gq1_A 243 PLV----------------------NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKL 300 (393)
T ss_dssp GGC----------------------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------
T ss_pred cce----------------------eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcc
Confidence 111 111223466677788876 799999999999999999999988888888777777
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC--CCCeEEEeeCCCCeEEEE
Q psy2110 366 KSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG--DGEYVCAGSARQHALYIW 443 (622)
Q Consensus 366 ~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~d~~i~iw 443 (622)
..+.+.|+.+.+.... ....+.|+| ++.++++|+. |+.|++|
T Consensus 301 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~sgs~-Dg~V~lw 344 (393)
T 4gq1_A 301 GPKNLLPNVQGISLFP-----------------------------------SLLGACPHPRYMDYFATAHSQ-HGLIQLI 344 (393)
T ss_dssp ---CCSCSEEEECSSC-----------------------------------CSSCCEECSSCTTEEEEEETT-TTEEEEE
T ss_pred ccEEEccccccccccC-----------------------------------cceeEEEccCCCCEEEEEECC-CCEEEEE
Confidence 7777766643221100 001123443 3445555665 9999999
Q ss_pred ECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110 444 EKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQN 488 (622)
Q Consensus 444 d~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~ 488 (622)
|+.+++.+..+.+|... |++++|+|+|++||+++++.+.+|++.
T Consensus 345 d~~~~~~~~~~~~~~~~-V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 345 NTYEKDSNSIPIQLGMP-IVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp ETTCTTCCEEEEECSSC-EEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred ECCCCcEEEEecCCCCc-EEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 99999998888888875 999999999999999997778888764
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.1e-30 Score=265.83 Aligned_cols=250 Identities=14% Similarity=0.212 Sum_probs=213.6
Q ss_pred hhhhhccccceeEEEEcCC-CCEEEEecCCCCeEEEEEcCC----------CceEEEEeccCcceeEEEEeecCcccccc
Q psy2110 74 KLQDLVNKTMWKKCCFSGD-GEYVCAGSARQHALYIWEKSV----------GNLVKILHGTKGELLLDVVEFDGALDCIS 142 (622)
Q Consensus 74 ~~~~~~~~~~~~~~~~sp~-~~~l~~~~~~~~~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 142 (622)
......+...+.+++|+|+ +.+|++++.+ |.|++|++.+ .+.+..+.+|...+
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~d-g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v--------------- 184 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPS-SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG--------------- 184 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSS-SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCC---------------
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCC-CcEEEEECCCcccccCccccCCCcEEecCCCCCe---------------
Confidence 3445567778899999997 6788888865 9999999987 67788899999888
Q ss_pred ceeEEEEcCCCC-EEEEeeCCCcEEEEecCCcccc-------cccccccCCCcccccccccceEEEEECC-CCCEEEEEe
Q psy2110 143 LAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIA-------KIISAHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGC 213 (622)
Q Consensus 143 ~v~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~ 213 (622)
++++|+|++. +|++|+.||.|++|++..+... ..+..|. ..|.+++|+| ++.+|++++
T Consensus 185 --~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-----------~~v~~v~~~p~~~~~l~s~~ 251 (430)
T 2xyi_A 185 --YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT-----------AVVEDVAWHLLHESLFGSVA 251 (430)
T ss_dssp --CCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS-----------SCEEEEEECSSCTTEEEEEE
T ss_pred --EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC-----------CCEeeeEEeCCCCCEEEEEe
Confidence 5999999998 9999999999999999874321 1222222 4589999999 678999999
Q ss_pred CCCeEEEEEcCCC---ceEEEeccCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEECCC-CcEEEEEe-CCCCeEEEEEeC
Q psy2110 214 NDGRIVLWDFLTR---GIAKIISAHMHPVCSISWSRNGY-KIISASTDNNVCIWDVLT-GECEQKYR-FPSPILKVQFHP 287 (622)
Q Consensus 214 ~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~ 287 (622)
.++.|++||+.++ +....+..|...|++++|+|++. .|++++.||.|++||+++ .+.+..+. |...|.+++|+|
T Consensus 252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence 9999999999977 56778889999999999999887 688999999999999998 45666666 889999999999
Q ss_pred CCCeEEEEeeCCCcEEEEEecC--------------CceeecccCCCCceEEEEEeeCCC-EEEEEecCCeEEEEeCCCc
Q psy2110 288 RNDHMFLVCPMRHAAVLVDTDG--------------DHQIVPIDEDSDLSIVASFDRRGQ-HVVTGNSKGKVLVLSCPAL 352 (622)
Q Consensus 288 ~~~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 352 (622)
+++.++++++.++.|++||+.. ...+.....|...+..++|+|+++ ++++++.||.|++|++...
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9998999999999999999986 255667778889999999999999 8999999999999998753
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-31 Score=257.78 Aligned_cols=273 Identities=9% Similarity=-0.006 Sum_probs=213.7
Q ss_pred EEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEE
Q psy2110 88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVL 167 (622)
Q Consensus 88 ~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 167 (622)
.+.+++.+|++|+.| |.|++||+.+++.+..+. ...+ .++.|+|+ +++++.|++|++
T Consensus 43 ~~~~d~~~l~sg~~D-g~v~iwd~~~~~~~~~~~--~~~v-----------------~~~~~~~~---~~s~s~D~~i~~ 99 (343)
T 3lrv_A 43 SMYYDKWVCMCRCED-GALHFTQLKDSKTITTIT--TPNP-----------------RTGGEHPA---IISRGPCNRLLL 99 (343)
T ss_dssp SSSEEEEEEEEEEET-TEEEEEEESSSSCEEEEE--EECC-----------------CTTCCCCS---EEEECSTTEEEE
T ss_pred hhcCCCCEEEEECCC-CcEEEEECCCCcEEEEEe--cCCc-----------------eeeeeCCc---eEEecCCCeEEE
Confidence 445678888888875 899999998888877776 2333 47778887 888899999999
Q ss_pred EecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec-cCCcCeeEEEEcC
Q psy2110 168 WDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS-AHMHPVCSISWSR 246 (622)
Q Consensus 168 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~ 246 (622)
|+... .+.+|++.+++.+..+. +|...|.+++|+|
T Consensus 100 w~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 135 (343)
T 3lrv_A 100 LYPGN--------------------------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHN 135 (343)
T ss_dssp EETTT--------------------------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC
T ss_pred EEccC--------------------------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCC
Confidence 97543 35567777777665554 7778999999999
Q ss_pred --CCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee-ecccC-CC
Q psy2110 247 --NGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI-VPIDE-DS 320 (622)
Q Consensus 247 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~ 320 (622)
++++|++++.||.|++||+++++...... +...+.+++|+|++. ++++++.|+.|++||+++.... ..+.. |.
T Consensus 136 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~ 214 (343)
T 3lrv_A 136 EVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEE 214 (343)
T ss_dssp ---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTT
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCC
Confidence 99999999999999999999999877664 456799999999887 6888899999999999998877 67777 89
Q ss_pred CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec---CCCCEE--EEEEcCCCCEEEEEeC-CCcEEEEecccc
Q psy2110 321 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA---STTAIK--SIEFARRGNCLLVNTG-DRLIRVYNHQEV 394 (622)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~--~~~~s~~~~~l~~~~~-d~~i~i~d~~~~ 394 (622)
..+.+++|+|++.+|++++ ++.|++||+++++.+..+.. |...+. +++|+|+|++|++++. |+.|++|++...
T Consensus 215 ~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 215 AKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp SCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 9999999999999999999 45999999998876554443 333343 6999999999999998 999999999731
Q ss_pred cccCCCCCCCcceeeeccccceeeeeEEEcC---CCCeEEEeeCCCCeEEEEEC
Q psy2110 395 LNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG---DGEYVCAGSARQHALYIWEK 445 (622)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~d~~i~iwd~ 445 (622)
...... ..+..++|++ +++.+++++. ++.+.++-.
T Consensus 294 ---------~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~-d~~~~~~~~ 331 (343)
T 3lrv_A 294 ---------TKNWTK------DEESALCLQSDTADFTDMDVVCG-DGGIAAILK 331 (343)
T ss_dssp ---------TCSEEE------EEEEECCC----CCCCEEEEEEE-TTEEEEEEE
T ss_pred ---------ccceEe------cCceeEecCccccccceeEEEec-CCceEEEEe
Confidence 111111 3445668888 8899999987 788877753
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-31 Score=290.37 Aligned_cols=245 Identities=20% Similarity=0.329 Sum_probs=210.3
Q ss_pred cccceeEEEEcCCCCEEEEecCCCCeEEEEEcC--CCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC--CCE
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS--VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR--GTL 155 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d--~~~ 155 (622)
+...+.+++|+|++++|++|+.+ |.|+|||+. +++.+..+.+|.+.| ++++|+|+ +++
T Consensus 8 H~~~V~~l~~s~dg~~latg~~d-g~I~vwd~~~~~~~~~~~l~~h~~~V-----------------~~l~~s~~~~~~~ 69 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPV-----------------WRVDWAHPKFGTI 69 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETT-TEEEEEEEETTEEEEEEEECCCSSCE-----------------EEEEECCTTSCSE
T ss_pred CcceeEEEEECCCCCeEEEEECC-CcEEEEecCCCCCccceeccCCcCce-----------------EEEEecCCCCCCE
Confidence 44567899999999999999975 999999998 667888899999988 59999988 999
Q ss_pred EEEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCc--eE
Q psy2110 156 LAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRG--IA 229 (622)
Q Consensus 156 l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~--~~ 229 (622)
|++|+.||.|++||+.+++ ....+..|. ..|.+++|+|+ ++++++|+.||.|++||+.++. ..
T Consensus 70 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~-----------~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHS-----------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCS-----------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred EEEEeCCCeEEEEECCCCcccccccccCCC-----------CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence 9999999999999999875 444444443 35899999999 9999999999999999998773 44
Q ss_pred EEeccCCcCeeEEEEcC-------------CCCEEEEEeCCCcEEEEECCCCc----EEEEEe-CCCCeEEEEEeCCC--
Q psy2110 230 KIISAHMHPVCSISWSR-------------NGYKIISASTDNNVCIWDVLTGE----CEQKYR-FPSPILKVQFHPRN-- 289 (622)
Q Consensus 230 ~~~~~~~~~v~~~~~s~-------------~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~-- 289 (622)
..+.+|...|.+++|+| ++.+|++++.||.|++||++++. ....+. |...|.+++|+|++
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence 56778999999999999 58999999999999999998773 444444 78899999999995
Q ss_pred CeEEEEeeCCCcEEEEEecCCc-----eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc
Q psy2110 290 DHMFLVCPMRHAAVLVDTDGDH-----QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE 353 (622)
Q Consensus 290 ~~~~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 353 (622)
..++++++.|+.+++||+++.. .......+...+.+++|+|+|+++++++.||.|++|++..+.
T Consensus 219 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 219 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 5689999999999999998763 444455678889999999999999999999999999998543
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.3e-31 Score=291.28 Aligned_cols=249 Identities=14% Similarity=0.211 Sum_probs=211.5
Q ss_pred EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecC--CcccccccccccCCCcccccccc
Q psy2110 117 VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL--TRGIAKIISAHMHPEFDGALDCI 194 (622)
Q Consensus 117 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~ 194 (622)
+..+.+|.+.| ++++|+|++++|++|+.||.|++|++. ++.....+..|.
T Consensus 2 ~~~l~gH~~~V-----------------~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~----------- 53 (753)
T 3jro_A 2 VVIANAHNELI-----------------HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE----------- 53 (753)
T ss_dssp ------CCCCE-----------------EEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCS-----------
T ss_pred eeecccCccee-----------------EEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCc-----------
Confidence 34677888888 599999999999999999999999998 445556666554
Q ss_pred cceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCC--CCEEEEEeCCCcEEEEECCCC
Q psy2110 195 SLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDVLTG 268 (622)
Q Consensus 195 ~~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~ 268 (622)
..|.+++|+|+ +++|++|+.||.|++||+.+++ ....+.+|...|++++|+|+ ++.|++++.||.|++||++++
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 35899999988 9999999999999999999887 67788899999999999999 999999999999999999887
Q ss_pred c---EEEEEeCCCCeEEEEEeCC------------CCeEEEEeeCCCcEEEEEecCC----ceeecccCCCCceEEEEEe
Q psy2110 269 E---CEQKYRFPSPILKVQFHPR------------NDHMFLVCPMRHAAVLVDTDGD----HQIVPIDEDSDLSIVASFD 329 (622)
Q Consensus 269 ~---~~~~~~~~~~v~~~~~~~~------------~~~~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~ 329 (622)
. ......+...|.+++|+|. +..++++++.++.|++||+++. .....+..|...+.+++|+
T Consensus 134 ~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (753)
T ss_dssp SCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred CCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence 3 2333348889999999995 2447889999999999999876 4556778899999999999
Q ss_pred eC---CCEEEEEecCCeEEEEeCCCcc-----EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110 330 RR---GQHVVTGNSKGKVLVLSCPALE-----LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 330 ~~---~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 393 (622)
|+ ++++++++.||.|++||+.+++ .......|...|++++|+|++++|++++.||.|++|++..
T Consensus 214 p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 214 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 99 8999999999999999998864 2333346888999999999999999999999999999984
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=9.9e-30 Score=238.56 Aligned_cols=258 Identities=12% Similarity=0.103 Sum_probs=197.1
Q ss_pred EEEEecCCCCeEEEEEcCCC---ceEEEEeccCcceeEEEEeec-Ccccc-------ccceeEEEEcCC----CCEEEEe
Q psy2110 95 YVCAGSARQHALYIWEKSVG---NLVKILHGTKGELLLDVVEFD-GALDC-------ISLAVTCAFNKR----GTLLAVG 159 (622)
Q Consensus 95 ~l~~~~~~~~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~~~-------~~~v~~~~~s~d----~~~l~s~ 159 (622)
.+++++. ..|++|+..++ ++++++.+|..+|+....... -.+-| ...|++++|+|| +++++++
T Consensus 56 ~~~~~~~--~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~ 133 (356)
T 2w18_A 56 CIITACE--DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKS 133 (356)
T ss_dssp EEEEEES--SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEE
T ss_pred EEEEecc--ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeC
Confidence 5677774 69999999999 899999999998864333221 11111 236788899999 8888887
Q ss_pred eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe--CCCeEEEEEc-CCCceEEEeccCC
Q psy2110 160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC--NDGRIVLWDF-LTRGIAKIISAHM 236 (622)
Q Consensus 160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~ 236 (622)
+. .+++|++. +|+++.+++ .++.|++|++ .+++.+..+..|.
T Consensus 134 g~--~~~v~~l~---------------------------------~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 134 GN--IKAVLGLT---------------------------------KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp EE--EEEEEEET---------------------------------TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred CC--eEEEEecC---------------------------------CCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 74 37777542 234444433 5899999999 4588888888999
Q ss_pred cCeeEEEEcC---CCCEEEEEeCCCcEEEEECCCCcEEEEEe-CC---CCeEEEEEeCCCCeE-----------EEEeeC
Q psy2110 237 HPVCSISWSR---NGYKIISASTDNNVCIWDVLTGECEQKYR-FP---SPILKVQFHPRNDHM-----------FLVCPM 298 (622)
Q Consensus 237 ~~v~~~~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~---~~v~~~~~~~~~~~~-----------~~~~~~ 298 (622)
..++.++|++ ++.+|++++.|++|+|||+.++++++.+. +. ..+.+++|+|++..+ +++++.
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 9999999999 77999999999999999999999999987 32 367788999998755 356788
Q ss_pred CCcEEEEEecCCceeecc-----cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEE-EEEEcC
Q psy2110 299 RHAAVLVDTDGDHQIVPI-----DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIK-SIEFAR 372 (622)
Q Consensus 299 ~~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~~~~s~ 372 (622)
|+++++||..++..+..+ .+|...+. ..+.++.++++++.|++|+|||+.+++++.++.+|...+. .++|+|
T Consensus 259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred CcEEEEEECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence 999999999988765443 24444433 3344488999999999999999999999999999877655 589999
Q ss_pred CCCEEEEEeCCCcEEEEec
Q psy2110 373 RGNCLLVNTGDRLIRVYNH 391 (622)
Q Consensus 373 ~~~~l~~~~~d~~i~i~d~ 391 (622)
||++|++++.|++|+|||+
T Consensus 337 DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 337 TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSSEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEECCCcEEEecC
Confidence 9999999999999999986
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=1.8e-31 Score=267.75 Aligned_cols=253 Identities=11% Similarity=0.128 Sum_probs=181.9
Q ss_pred EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEE-----EEeccCcceeEEEEeecCccccccceeEEEEcC--------C
Q psy2110 86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK-----ILHGTKGELLLDVVEFDGALDCISLAVTCAFNK--------R 152 (622)
Q Consensus 86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--------d 152 (622)
...+++++.+|++++.| ++|+|||+.+++... .+.+|.+.| .+++|+| |
T Consensus 94 ~~~~~~~~~~las~~~d-~~v~lw~~~~~~~~~~~~~~~~~gH~~~v-----------------~~v~~~p~~~~~~~~d 155 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQD-NTVRLIITKNETIITQHVLGGKSGHHNFV-----------------NDIDIADVYSADNRLA 155 (393)
T ss_dssp ---CCEEEEEEEEEETT-SCEEEEEEETTEEEEEEEECTTTSCSSCE-----------------EEEEEEEEECTTCSEE
T ss_pred eeecCCCCCEEEEEeCC-CcEEEEECCCCccceeeeecccCCCCCce-----------------EEEEEccccccccCCC
Confidence 45677788899999975 999999999886543 367899988 5999998 8
Q ss_pred CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCceEEE
Q psy2110 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKI 231 (622)
Q Consensus 153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iwd~~~~~~~~~ 231 (622)
+++||+|+.|++|+|||+.++.....+..+. ..+.+++|+|++. +|++++.|+.|++||+.+++....
T Consensus 156 ~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~-----------~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~ 224 (393)
T 4gq1_A 156 EQVIASVGDDCTLIIWRLTDEGPILAGYPLS-----------SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE 224 (393)
T ss_dssp EEEEEEEETTSEEEEEEEETTEEEEEEEECS-----------SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----
T ss_pred CCEEEEEECCCeEEEEECCCCceeeeecCCC-----------CCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccc
Confidence 8999999999999999998876666555554 3589999999875 799999999999999987654322
Q ss_pred -------------------------eccCCcCeeEEEEc-CCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEE
Q psy2110 232 -------------------------ISAHMHPVCSISWS-RNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQ 284 (622)
Q Consensus 232 -------------------------~~~~~~~v~~~~~s-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~ 284 (622)
..+|...+.++.|+ ++++.|++++.|+++++||+.+++....+. +...+..+.
T Consensus 225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence 23677889999987 799999999999999999999887766554 445555566
Q ss_pred EeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEee-CCCEEEEEecCCeEEEEeCCCccEEEEEecCCC
Q psy2110 285 FHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALELKASFKASTT 363 (622)
Q Consensus 285 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 363 (622)
+.|+.... ..+...+..+.+.+ ++.++++|+.||.|++||+.+++....+..|..
T Consensus 305 ~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~ 360 (393)
T 4gq1_A 305 LLPNVQGI------------------------SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM 360 (393)
T ss_dssp CSCSEEEE------------------------CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS
T ss_pred Eccccccc------------------------cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC
Confidence 66543210 11111122222222 445677788999999999999999888889999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 364 AIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 364 ~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
.|++++|+|+|++||+++.+| +.+|.+.
T Consensus 361 ~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 361 PIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 999999999999999998765 5666654
No 128
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1e-30 Score=257.64 Aligned_cols=267 Identities=12% Similarity=0.079 Sum_probs=211.6
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC---------CCcEE
Q psy2110 201 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL---------TGECE 271 (622)
Q Consensus 201 ~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~---------~~~~~ 271 (622)
.+.+++++|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 345678899999999999999999999888776 467888889888 9999999999999655 55655
Q ss_pred EEEe--CCCCeEEEEEeC--CCCeEEEEeeCCCcEEEEEecCCceeecc-cCCCCceEEEEEeeCCCEEEEEecCCeEEE
Q psy2110 272 QKYR--FPSPILKVQFHP--RNDHMFLVCPMRHAAVLVDTDGDHQIVPI-DEDSDLSIVASFDRRGQHVVTGNSKGKVLV 346 (622)
Q Consensus 272 ~~~~--~~~~v~~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 346 (622)
+.+. +..+|.+++|+| ++. ++++++.|+.+++||+++....... ..+...+.+++|+|++.++++|+.||.|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 5555 557899999999 776 6888999999999999988776554 334557999999999999999999999999
Q ss_pred EeCCCccEE-EEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccc-eee--eeE
Q psy2110 347 LSCPALELK-ASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK-TMW--KKC 421 (622)
Q Consensus 347 ~d~~~~~~~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ 421 (622)
||+++++.+ ..+.. |...|++++|+|++.+|++++ ++.|++||++.. ..+..+.....+ ..+ .++
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~ 266 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD---------VGTLAYPTYTIPEFKTGTVTY 266 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS---------TTCBSSCCCBC-----CCEEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC---------CcceeecccccccccccceEE
Confidence 999999987 78888 999999999999999999999 459999999842 222222211111 111 458
Q ss_pred EEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECC---CCCEEEEEe-CCcEEEeecC
Q psy2110 422 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHP---VRPIIASIS-SGVVSLWAQN 488 (622)
Q Consensus 422 ~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp---~~~~l~s~~-dg~v~iw~~~ 488 (622)
+|+|+|++|++++..++.|+||++..+...... .++..++|+| +...+++++ ||.+.++-..
T Consensus 267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 267 DIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred EECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 999999999998865789999998765433332 2378899999 888888888 9999987653
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.98 E-value=1.4e-29 Score=263.12 Aligned_cols=337 Identities=13% Similarity=0.059 Sum_probs=259.7
Q ss_pred EEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc--CC
Q psy2110 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF--LT 225 (622)
Q Consensus 148 ~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~--~~ 225 (622)
+|+|++.++++++.|++|.+||..+++.+..+.... .+..++|+|+|++|++++.++.|++||+ .+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~------------~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t 211 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY------------AVHISRMSASGRYLLVIGRDARIDMIDLWAKE 211 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST------------TEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc------------ccceEEECCCCCEEEEECCCCeEEEEECcCCC
Confidence 488999999999999999999999998887776332 2578999999999999999999999999 88
Q ss_pred CceEEEeccCCcCeeEEEEcC----CCCEEEEEeC-CCcEEEEECCCCcEEEEEeC------------CCCeEEEEEeCC
Q psy2110 226 RGIAKIISAHMHPVCSISWSR----NGYKIISAST-DNNVCIWDVLTGECEQKYRF------------PSPILKVQFHPR 288 (622)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~s~----~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~------------~~~v~~~~~~~~ 288 (622)
++.+..+.. ...+.+++|+| ||++|++++. +++|.+||..++++++.+.. ...+.++.++|+
T Consensus 212 ~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 212 PTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp CEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred CcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence 888888874 45679999999 9999999885 89999999999999888763 226889999999
Q ss_pred CCeEEEEeeCCCcEEEEEecCCceee--cccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCccEEEEEec----C
Q psy2110 289 NDHMFLVCPMRHAAVLVDTDGDHQIV--PIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALELKASFKA----S 361 (622)
Q Consensus 289 ~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~----~ 361 (622)
++.++++...++.|.+||..+...+. .+ .+...+..++|+|+|+++++++ .+++|.+||+.+++++..+.. |
T Consensus 291 ~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph 369 (543)
T 1nir_A 291 HPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 369 (543)
T ss_dssp SSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC
T ss_pred CCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC
Confidence 99999999999999999998754332 33 2455677899999999877654 588999999999999988874 5
Q ss_pred CCCEEEEEEcCC-CCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC---C
Q psy2110 362 TTAIKSIEFARR-GNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA---R 436 (622)
Q Consensus 362 ~~~i~~~~~s~~-~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~ 436 (622)
......+ ++|+ +..++++. .|++|.+||+..... .....+.++.+..+. .....+.|+|+|++|++++. +
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~--~~~~~~~v~~l~~~g--~~~~~v~~~pdg~~l~v~~~~~~~ 444 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH--PQYAWKKVAELQGQG--GGSLFIKTHPKSSHLYVDTTFNPD 444 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC--TTTBTSEEEEEECSC--SCCCCEECCTTCCEEEECCTTCSS
T ss_pred CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC--chhcCeEEEEEEcCC--CCceEEEcCCCCCcEEEecCCCCC
Confidence 4444343 4777 55566664 589999999984100 011145566665433 23356799999999999862 1
Q ss_pred ---CCeEEEEECCCCeeE-EEE--------ecCCCCceeEEEECCCCCEEEEE-----e-CCcEEEeecCCccccc----
Q psy2110 437 ---QHALYIWEKSVGNLV-KIL--------HGTKGELLLDVVWHPVRPIIASI-----S-SGVVSLWAQNQVENWS---- 494 (622)
Q Consensus 437 ---d~~i~iwd~~~~~~~-~~~--------~~~~~~~v~~v~~sp~~~~l~s~-----~-dg~v~iw~~~~~~~~~---- 494 (622)
+++|.|||+.+++.. ..+ ..+. ..+..++|+|+|+.|+++ + ++.|.|||..+.+...
T Consensus 445 ~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 445 ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA-KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp HHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC-CEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred cccCceEEEEECCCCCCCeEEeechhhcccCCCC-CceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 568999999998877 444 2333 349999999999988765 2 6999999998653321
Q ss_pred --ccCCCCceec
Q psy2110 495 --AFAPDFKELD 504 (622)
Q Consensus 495 --~~s~~~~~l~ 504 (622)
.++|.|+.-.
T Consensus 524 ~~~~~p~g~~~~ 535 (543)
T 1nir_A 524 PRLITPTGKFNV 535 (543)
T ss_dssp TTCCSEEEEEEH
T ss_pred CCccCCCeeeec
Confidence 4556666544
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=3e-29 Score=235.32 Aligned_cols=281 Identities=7% Similarity=0.051 Sum_probs=196.5
Q ss_pred eeEEEEcCCCC---EEEEeeCCCcEEEEecCCc---ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe
Q psy2110 144 AVTCAFNKRGT---LLAVGCNDGRIVLWDFLTR---GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217 (622)
Q Consensus 144 v~~~~~s~d~~---~l~s~~~dg~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 217 (622)
+.++-|-..+. .+++++. ..|++|+..++ +.+.++..+.. .|..+++.||-.-|++..- |
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~~~~~-~- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEV-----------PVLQIVPVPDVYNLVCVAL-G- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSS-----------CEEEECCCTTCCSCEEEEE-C-
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCc-----------eeEEEEEcCcccceeeeee-c-
Confidence 34666655444 6777776 68999999998 66777776653 4889999997654443321 1
Q ss_pred EEEEEcCCCceEEEeccCCcCeeEEEEcCC----CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEE
Q psy2110 218 IVLWDFLTRGIAKIISAHMHPVCSISWSRN----GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMF 293 (622)
Q Consensus 218 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 293 (622)
.-+...|++++++|| ++++++++. .+.+|++.+++.+....
T Consensus 108 ---------------~~~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~------------------ 152 (356)
T 2w18_A 108 ---------------NLEIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSG------------------ 152 (356)
T ss_dssp ---------------SSSEEEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEES------------------
T ss_pred ---------------cccccceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecc------------------
Confidence 124567899999999 999999884 47888776554433321
Q ss_pred EEeeCCCcEEEEEecC-CceeecccCCCCceEEEEEee---CCCEEEEEecCCeEEEEeCCCccEEEEEecCCC---CEE
Q psy2110 294 LVCPMRHAAVLVDTDG-DHQIVPIDEDSDLSIVASFDR---RGQHVVTGNSKGKVLVLSCPALELKASFKASTT---AIK 366 (622)
Q Consensus 294 ~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~ 366 (622)
.+.++.|++|++.. ++.+..+..|...+..++|++ ++.+|++++.|++|+|||+.++++++++.+|.. .+.
T Consensus 153 --~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~ 230 (356)
T 2w18_A 153 --TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVC 230 (356)
T ss_dssp --SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCE
T ss_pred --cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeE
Confidence 12355566666632 444555667888888999999 779999999999999999999999999986543 577
Q ss_pred EEEEcCCCCEE------------EEEeCCCcEEEEecccccccCCCCCCCcceeee--ccccc-eeeeeEEEcCCCCeEE
Q psy2110 367 SIEFARRGNCL------------LVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQ--DLVNK-TMWKKCCFSGDGEYVC 431 (622)
Q Consensus 367 ~~~~s~~~~~l------------~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~spdg~~l~ 431 (622)
+++|+|+|+++ ++++.|++|++||..+. ..+..+. ...++ ..+.+..+ ++.++|
T Consensus 231 ~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg---------k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lA 299 (356)
T 2w18_A 231 HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT---------LSVGVMLYCLPPGQAGRFLEGDV--KDHCAA 299 (356)
T ss_dssp EEEEEETTEEEEEEC------------CCEEEEEEETTTT---------EEEEEEEECCCTTCCCCEEEEEE--ETTEEE
T ss_pred EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC---------EEEEEEEeeccCCCcceeEcccc--CCCEEE
Confidence 78999999876 55778999999998832 2222221 00011 11222233 377889
Q ss_pred EeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110 432 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ 487 (622)
Q Consensus 432 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~ 487 (622)
+++. |++|+|||+.+|+++..+.+|....+..++|+|++++|++++ |++|+||++
T Consensus 300 SgS~-DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 300 AILT-SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEET-TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEcC-CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9987 999999999999999999999877455699999999999999 999999986
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=7.5e-29 Score=250.09 Aligned_cols=299 Identities=14% Similarity=0.166 Sum_probs=229.0
Q ss_pred eEEEEcCCCC-EEEEee----CCC----cEEEEec--CCccccc--ccccccCCCcccccccccceEEEEECC-------
Q psy2110 145 VTCAFNKRGT-LLAVGC----NDG----RIVLWDF--LTRGIAK--IISAHMHPEFDGALDCISLAVTCAFNK------- 204 (622)
Q Consensus 145 ~~~~~s~d~~-~l~s~~----~dg----~i~vw~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~------- 204 (622)
....|++.|. ++++|+ .+| .|++||+ .+++.+. .+..+... +..+++++
T Consensus 66 ~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~~~~~ 134 (415)
T 2hqs_A 66 QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQW-----------LRYAGHTASDEVFEK 134 (415)
T ss_dssp CHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGG-----------HHHHHHHHHHHHHHH
T ss_pred CHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhH-----------HHHHHHHHHHHHHHH
Confidence 4667888776 565776 467 8999999 8887653 24443221 22222222
Q ss_pred -------CCCEEEEEeCC------CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCC---cEEEEECCCC
Q psy2110 205 -------RGTLLAVGCND------GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDN---NVCIWDVLTG 268 (622)
Q Consensus 205 -------~g~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iwd~~~~ 268 (622)
.+..+++++.+ +.|++||+.. ...+.+..|...+.+++|+|||++|++++.++ .|++||+.++
T Consensus 135 ~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 135 LTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp HHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred HcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 25566666554 7999999974 55677888999999999999999999999875 9999999999
Q ss_pred cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCc--EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC-C--e
Q psy2110 269 ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHA--AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK-G--K 343 (622)
Q Consensus 269 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~ 343 (622)
+......+...+.+++|+|+++.++++++.++. +++||+.++.. ..+..+...+..++|+|+|++|++++.+ + .
T Consensus 214 ~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 214 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 987766688899999999999988878776654 89999987654 5566677889999999999999888764 4 7
Q ss_pred EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccccCCCCCCCcceeeeccccceeeee
Q psy2110 344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD---RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420 (622)
Q Consensus 344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (622)
|++||+.+++. ..+..+...+.+++|+|+|++|++++.+ ..|++||+.. .. ...+... ..+..
T Consensus 293 i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~---------~~-~~~l~~~---~~~~~ 358 (415)
T 2hqs_A 293 VYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---------GG-VQVLSST---FLDET 358 (415)
T ss_dssp EEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT---------CC-EEECCCS---SSCEE
T ss_pred EEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC---------CC-EEEecCC---CCcCC
Confidence 88889988764 3455667789999999999999988764 5799999873 11 1223222 25567
Q ss_pred EEEcCCCCeEEEeeCCCC--eEEEEECCCCeeEEEEecCCCCceeEEEECCCCC
Q psy2110 421 CCFSGDGEYVCAGSARQH--ALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP 472 (622)
Q Consensus 421 ~~~spdg~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 472 (622)
++|+|||++|++++.+++ .|++||+. +.....+.+|.+. |.+++|+|...
T Consensus 359 ~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~-v~~~~~~~~~~ 410 (415)
T 2hqs_A 359 PSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQ-VKFPAWSPYLH 410 (415)
T ss_dssp EEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSE-EEEEEECCCCC
T ss_pred eEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCC-CcCCccccccc
Confidence 899999999999887444 79999987 5557888888877 99999999753
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=4.1e-28 Score=265.23 Aligned_cols=341 Identities=11% Similarity=0.126 Sum_probs=243.5
Q ss_pred cceeEEEEcCCCCEEEEecCCCC-----eEEEEEcCCCceEEEEeccCcceeEEEEeecC-------ccccccceeEEEE
Q psy2110 82 TMWKKCCFSGDGEYVCAGSARQH-----ALYIWEKSVGNLVKILHGTKGELLLDVVEFDG-------ALDCISLAVTCAF 149 (622)
Q Consensus 82 ~~~~~~~~sp~~~~l~~~~~~~~-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~v~~~~~ 149 (622)
..+.+++|||||++|++++..++ .|++||+.+++....+..+...-........+ .......+.+++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 34678999999999999987346 89999999998887776654320000000000 0000012468999
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Q psy2110 150 NKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG 227 (622)
Q Consensus 150 s~d~~~l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~ 227 (622)
||||++|++++. +.|++||+.++. ....+..+. ..+..++|+|||++|++++ ++.|++||+.+++
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~-----------~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGE-----------GFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSS-----------SCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCC-----------cccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence 999999999987 899999998872 223333322 2478999999999999987 5699999999887
Q ss_pred eEEEeccCCcC----------------eeEEEEcCCCCEEEEEeCCC---------------------------------
Q psy2110 228 IAKIISAHMHP----------------VCSISWSRNGYKIISASTDN--------------------------------- 258 (622)
Q Consensus 228 ~~~~~~~~~~~----------------v~~~~~s~~~~~l~s~~~d~--------------------------------- 258 (622)
.......+... +.+++|||||++|++++.|+
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 66555444332 47899999999999987765
Q ss_pred cEEEEECCC-CcEEEEE---eCCCCeEEEEEeCCCCeEEEEee----CCCcEEEEEecCCceeecccCCCC----ceEEE
Q psy2110 259 NVCIWDVLT-GECEQKY---RFPSPILKVQFHPRNDHMFLVCP----MRHAAVLVDTDGDHQIVPIDEDSD----LSIVA 326 (622)
Q Consensus 259 ~i~iwd~~~-~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~ 326 (622)
.|++||+.+ ++..... .+...+..++| |+++.+++.+. .+..+++||+.++.....+..+.. .+..+
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 342 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL 342 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence 789999998 8765544 24567899999 99998777664 356799999988766555444332 34578
Q ss_pred EEeeCCCEEEEEecCCeEEEEeCC-CccEEEEEecCCCCEEEE-EEcCCCCEEEEEeC-CC--cEEEEecccccccCCCC
Q psy2110 327 SFDRRGQHVVTGNSKGKVLVLSCP-ALELKASFKASTTAIKSI-EFARRGNCLLVNTG-DR--LIRVYNHQEVLNAGKDG 401 (622)
Q Consensus 327 ~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~ 401 (622)
+|+|+|+++++++.+|.+.||.+. +++ ...+..+...+..+ .|+|+++.|++.+. ++ .+++|++..
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~-------- 413 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL-------- 413 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET--------
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc--------
Confidence 999999999999999877777654 345 77788888888887 59999998876554 44 899999862
Q ss_pred CCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCC---CeEEEEECCCC
Q psy2110 402 DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQ---HALYIWEKSVG 448 (622)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d---~~i~iwd~~~~ 448 (622)
.......+.. ...+..++|||||++|+...... ..+++|+...+
T Consensus 414 ~g~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 414 QGGQPQRLSK---APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp TCCCCEECCC---SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCCeeeccc---CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 1122333332 23345789999999998765422 46899987543
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=9.2e-28 Score=262.45 Aligned_cols=329 Identities=10% Similarity=0.071 Sum_probs=241.3
Q ss_pred eeEEEEcCCCCEEEEeeC-CC-----cEEEEecCCcccccccccccCCC-----------c--ccccccccceEEEEECC
Q psy2110 144 AVTCAFNKRGTLLAVGCN-DG-----RIVLWDFLTRGIAKIISAHMHPE-----------F--DGALDCISLAVTCAFNK 204 (622)
Q Consensus 144 v~~~~~s~d~~~l~s~~~-dg-----~i~vw~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~v~~~~~s~ 204 (622)
+.+++|||||++|++++. |+ .|++||+.+++....+..+.... . .........+.+++|+|
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 469999999999999998 88 89999999987665554332110 0 00000001367889999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC---
Q psy2110 205 RGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSP--- 279 (622)
Q Consensus 205 ~g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--- 279 (622)
||++|++++. +.|++||+.++. ....+..|...+.+++|||||++|++++ ++.|++||+.+++..+.......
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~ 196 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIG 196 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEE
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcccee
Confidence 9999999886 999999998873 4456777888999999999999999987 46899999999887665543222
Q ss_pred --------------eEEEEEeCCCCeEEEEeeCCC--------------------------------cEEEEEecC-Cce
Q psy2110 280 --------------ILKVQFHPRNDHMFLVCPMRH--------------------------------AAVLVDTDG-DHQ 312 (622)
Q Consensus 280 --------------v~~~~~~~~~~~~~~~~~~~~--------------------------------~i~~~d~~~-~~~ 312 (622)
+..+.|+||++.++++....+ .+++||+.+ +..
T Consensus 197 ~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 276 (741)
T 2ecf_A 197 NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT 276 (741)
T ss_dssp ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC
T ss_pred ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce
Confidence 478999999998776654332 678888877 654
Q ss_pred eeccc--CCCCceEEEEEeeCCCEEEEEec-----CCeEEEEeCCCccEEEEEecCCC----CEEEEEEcCCCCEEEEEe
Q psy2110 313 IVPID--EDSDLSIVASFDRRGQHVVTGNS-----KGKVLVLSCPALELKASFKASTT----AIKSIEFARRGNCLLVNT 381 (622)
Q Consensus 313 ~~~~~--~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~ 381 (622)
..... .+...+..++| |||++|++++. +..|++||+.+++....+..+.. .+.+++|+|||+++++++
T Consensus 277 ~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 355 (741)
T 2ecf_A 277 QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSE 355 (741)
T ss_dssp EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEEC
T ss_pred EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEec
Confidence 43322 36677889999 99999987654 56899999999988877766543 456899999999888888
Q ss_pred CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeE-EEcCCCCeEEEeeCCCC--eEEEEECCC-CeeEEEEecC
Q psy2110 382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKC-CFSGDGEYVCAGSARQH--ALYIWEKSV-GNLVKILHGT 457 (622)
Q Consensus 382 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~spdg~~l~~~~~~d~--~i~iwd~~~-~~~~~~~~~~ 457 (622)
.++.++||.++. ... ...+..+ ...+..+ .|+|||++|+..+..++ .++||++.. +.....+..
T Consensus 356 ~~g~~~l~~~~~--------~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 356 RTGFQHLYRIDS--------KGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp TTSSCEEEEECS--------SSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred CCCccEEEEEcC--------CCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 899888887652 111 3333322 2334455 69999998876665455 789998764 555667766
Q ss_pred CCCceeEEEECCCCCEEEEEe-C----CcEEEeecC
Q psy2110 458 KGELLLDVVWHPVRPIIASIS-S----GVVSLWAQN 488 (622)
Q Consensus 458 ~~~~v~~v~~sp~~~~l~s~~-d----g~v~iw~~~ 488 (622)
... +..++|+|+++.|+... + ..+++|+..
T Consensus 424 ~~~-~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 424 APG-MHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp SCS-EEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred CCC-ceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 333 88999999999887664 3 468888764
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=2.8e-27 Score=238.58 Aligned_cols=301 Identities=12% Similarity=0.106 Sum_probs=227.5
Q ss_pred ceeEEEEcCCCC-EEEEecC---CCC----eEEEEEc--CCCceE--EEEeccCcceeEEEEeecCccccccceeEEEEc
Q psy2110 83 MWKKCCFSGDGE-YVCAGSA---RQH----ALYIWEK--SVGNLV--KILHGTKGELLLDVVEFDGALDCISLAVTCAFN 150 (622)
Q Consensus 83 ~~~~~~~sp~~~-~l~~~~~---~~~----~i~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s 150 (622)
.+....|++.|. ++++|+. .+| .|++||+ .+++.+ ..+.+|...+ +.++++
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 126 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWL-----------------RYAGHT 126 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGH-----------------HHHHHH
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHH-----------------HHHHHH
Confidence 445567888875 4546652 347 8999999 999877 5588888766 244444
Q ss_pred C--------------CCCEEEEeeCC------CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEE
Q psy2110 151 K--------------RGTLLAVGCND------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLA 210 (622)
Q Consensus 151 ~--------------d~~~l~s~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 210 (622)
+ .+..++.++.+ +.|++||+.. .....+..+. ..+.+++|+|+|++|+
T Consensus 127 ~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~-----------~~v~~~~~Spdg~~la 194 (415)
T 2hqs_A 127 ASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSP-----------QPLMSPAWSPDGSKLA 194 (415)
T ss_dssp HHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEES-----------SCEEEEEECTTSSEEE
T ss_pred HHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCC-----------CcceeeEEcCCCCEEE
Confidence 3 25666666654 7999999974 3445554443 3589999999999999
Q ss_pred EEeCCC---eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEE-EEeCCCc--EEEEECCCCcEEEEEeCCCCeEEEE
Q psy2110 211 VGCNDG---RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKII-SASTDNN--VCIWDVLTGECEQKYRFPSPILKVQ 284 (622)
Q Consensus 211 ~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~ 284 (622)
+++.++ .|++||+.+++.. .+..|...+.+++|+|||++|+ +++.++. |++||+.+++......+...+.+++
T Consensus 195 ~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 195 YVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 273 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEE
T ss_pred EEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceE
Confidence 998875 9999999988765 5667888999999999999888 5655554 9999999988766556778899999
Q ss_pred EeCCCCeEEEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC---CeEEEEeCCCccEEEEEe
Q psy2110 285 FHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK---GKVLVLSCPALELKASFK 359 (622)
Q Consensus 285 ~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~ 359 (622)
|+|+++.+++++..++ .+++||+.++.. ..+..+...+..++|+|+|++|++++.+ +.|++||+.+++.. .+.
T Consensus 274 ~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 274 WFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred ECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 9999997777765555 577778876543 3344556678899999999999988764 58999999988774 455
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC
Q psy2110 360 ASTTAIKSIEFARRGNCLLVNTGDR---LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE 428 (622)
Q Consensus 360 ~~~~~i~~~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 428 (622)
.+. .+.+++|+|+|++|++++.++ .|++||+.. .....+.. ....+.+++|+|.-.
T Consensus 352 ~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g----------~~~~~l~~--~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 352 STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG----------RFKARLPA--TDGQVKFPAWSPYLH 410 (415)
T ss_dssp CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS----------CCEEECCC--SSSEEEEEEECCCCC
T ss_pred CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC----------CcEEEeeC--CCCCCcCCccccccc
Confidence 554 899999999999999988776 799999863 23333433 234567889999654
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=2.1e-27 Score=258.97 Aligned_cols=350 Identities=10% Similarity=0.092 Sum_probs=243.1
Q ss_pred eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC-
Q psy2110 84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND- 162 (622)
Q Consensus 84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d- 162 (622)
..+++|||||+++++ +. ++.|++||+.+++....+.+|.... ..|.+++|||||++|++++.+
T Consensus 19 ~~~~~~spdg~~~~~-~~-dg~i~~~d~~~g~~~~~~~~~~~~~--------------~~v~~~~~SpDg~~l~~~~~~~ 82 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQ-KGTVRLWNVETNTSTVLIEGKKIES--------------LRAIRYEISPDREYALFSYNVE 82 (723)
T ss_dssp CCCCCBSSSSCBCCC-CS-SSCEEEBCGGGCCCEEEECTTTTTT--------------TTCSEEEECTTSSEEEEEESCC
T ss_pred ccccEEcCCCcEEEE-eC-CCCEEEEECCCCcEEEEeccccccc--------------cccceEEECCCCCEEEEEecCc
Confidence 457899999997766 44 5899999999999888887776420 012599999999999999764
Q ss_pred --------CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEecc
Q psy2110 163 --------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA 234 (622)
Q Consensus 163 --------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 234 (622)
+.|++||+.+++. ..+...... ...+..++|||||+.|++++. +.|++|++.+++..+....
T Consensus 83 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~--------~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 83 PIYQHSYTGYYVLSKIPHGDP-QSLDPPEVS--------NAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp CCSSSCCCSEEEEEESSSCCC-EECCCTTCC--------SCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred cceeecceeeEEEEECCCCce-EeccCCccc--------cccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence 7888999998865 222221100 012567899999999999885 7999999998887766655
Q ss_pred CCcCe------------------eEEEEcCCCCEEEEEeCC-CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEE
Q psy2110 235 HMHPV------------------CSISWSRNGYKIISASTD-NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLV 295 (622)
Q Consensus 235 ~~~~v------------------~~~~~s~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 295 (622)
+...+ .+++|||||++|++++.+ +.+.+|++..... .....+..+.|.++|..
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~G~~---- 224 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG----SIYPTVKPYHYPKAGSE---- 224 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS----SSSCCCEEEECCBTTSC----
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC----cCCCcceeccCCCCCCC----
Confidence 44433 789999999999988765 4677777643211 12235778888887752
Q ss_pred eeCCCcEEEEEecCCceeecccCC------CCceEEEEEeeCCCEEEEEec----CCeEEEEeCCCccEEEEEec-CCCC
Q psy2110 296 CPMRHAAVLVDTDGDHQIVPIDED------SDLSIVASFDRRGQHVVTGNS----KGKVLVLSCPALELKASFKA-STTA 364 (622)
Q Consensus 296 ~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~-~~~~ 364 (622)
..+..+++||+.++.....+..+ ...+..++|+|||+++++... +..|++||+.++++...+.. +...
T Consensus 225 -~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 303 (723)
T 1xfd_A 225 -NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW 303 (723)
T ss_dssp -CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred -CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCE
Confidence 23457899999887654444433 566788999999998877643 35799999999987776654 3333
Q ss_pred E----EEEEEcCCCCEEEEE--eCCC------cEEEEec-ccccccCCCCCCCcceeeeccccceeee-eEEEcCCCCeE
Q psy2110 365 I----KSIEFARRGNCLLVN--TGDR------LIRVYNH-QEVLNAGKDGDPEPIQKLQDLVNKTMWK-KCCFSGDGEYV 430 (622)
Q Consensus 365 i----~~~~~s~~~~~l~~~--~~d~------~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l 430 (622)
+ ..++|+|||+.|++. ..++ .|++||+ .. +.......+.. ....+. .++|||||++|
T Consensus 304 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~-------~~~~~~~~l~~--~~~~~~~~~~~spdg~~l 374 (723)
T 1xfd_A 304 LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN-------SSNDNIQSITS--GDWDVTKILAYDEKGNKI 374 (723)
T ss_dssp CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC-------SSSCCCCBSCC--SSSCEEEEEEEETTTTEE
T ss_pred EeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC-------CCccceeEeec--CCeEEEeeeEEcCCCCEE
Confidence 3 378999999987764 4566 4666773 31 11000222221 112223 35899999999
Q ss_pred EEeeCCC--CeEEEEECCCC--eeEEEEec---CCCCceeEEEECCCCCEEEEEe
Q psy2110 431 CAGSARQ--HALYIWEKSVG--NLVKILHG---TKGELLLDVVWHPVRPIIASIS 478 (622)
Q Consensus 431 ~~~~~~d--~~i~iwd~~~~--~~~~~~~~---~~~~~v~~v~~sp~~~~l~s~~ 478 (622)
+..+.++ +.++||++... .....+.. |... +..++|+|++++|+...
T Consensus 375 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 375 YFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCT-YFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCC-CCEEEECTTSSEEEEEC
T ss_pred EEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCC-eEEEEECCCCCEEEEEc
Confidence 8777645 78899987642 23344443 3444 88999999999887764
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=1.3e-25 Score=220.17 Aligned_cols=288 Identities=12% Similarity=0.099 Sum_probs=214.7
Q ss_pred EEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-CCeEEEEEcCC
Q psy2110 148 AFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-DGRIVLWDFLT 225 (622)
Q Consensus 148 ~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iwd~~~ 225 (622)
.|.++++ .+++++.++.|++||..+++....+..+. ..+ .++|+|+|+++++++. ++.|.+||+.+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-----------~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~ 71 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGY-----------DFV-DTAITSDCSNVVVTSDFCQTLVQIETQL 71 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCC-----------CEE-EEEECSSSCEEEEEESTTCEEEEEECSS
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccC-----------Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence 4555555 46778889999999999988776665432 235 8999999997776665 88999999999
Q ss_pred Cce-EEEeccCCcCeeEEEEcCCCCEEEEEeCCC---cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCc
Q psy2110 226 RGI-AKIISAHMHPVCSISWSRNGYKIISASTDN---NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHA 301 (622)
Q Consensus 226 ~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 301 (622)
++. ...+..+..+..+++|+|+|++|+++..++ .|.+||+.+++.+..+........++|+|+++.++++...++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 151 (331)
T 3u4y_A 72 EPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSAN 151 (331)
T ss_dssp SSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTT
T ss_pred CceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCc
Confidence 987 777777777666699999999999555543 8999999999999988888888999999999988888888788
Q ss_pred -EEEEEecCCcee----ecccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCccE---EEEEecCCCCEEEEEEcC
Q psy2110 302 -AVLVDTDGDHQI----VPIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALEL---KASFKASTTAIKSIEFAR 372 (622)
Q Consensus 302 -i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~s~ 372 (622)
+.+|++.....+ ............++|+|+|+++++++ .++.|.+||+.+++. +..+..+ ..+..++|+|
T Consensus 152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~sp 230 (331)
T 3u4y_A 152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSR 230 (331)
T ss_dssp EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECT
T ss_pred eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECC
Confidence 999998754332 11123345578899999999765554 688999999999887 7777654 6678999999
Q ss_pred CCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeecc--ccc---eeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110 373 RGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL--VNK---TMWKKCCFSGDGEYVCAGSARQHALYIWEKS 446 (622)
Q Consensus 373 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~ 446 (622)
+|++|++++ .++.|.+||+.... ...+..+... ... .....++|+|||++|++++.+++.|.+||+.
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLSGT-------LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTTTE-------EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CCCEEEEEEcCCCEEEEEECCCCc-------eeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 999877765 47789999987321 1112222211 001 1113579999999998887768899999998
Q ss_pred CCeeEEEEec
Q psy2110 447 VGNLVKILHG 456 (622)
Q Consensus 447 ~~~~~~~~~~ 456 (622)
... +..+.+
T Consensus 304 ~~~-~~~~~~ 312 (331)
T 3u4y_A 304 GKV-VGYVAG 312 (331)
T ss_dssp SCE-EEECTT
T ss_pred CCc-ccceec
Confidence 654 333433
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=1.1e-26 Score=253.33 Aligned_cols=324 Identities=11% Similarity=0.141 Sum_probs=223.4
Q ss_pred ceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccc
Q psy2110 4 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM 83 (622)
Q Consensus 4 V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (622)
+.+++|||||+++++ +.||+|++||+.+++.. .+..... . ....
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~----------------~~~~~~~------------~-------~~~~ 62 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTST----------------VLIEGKK------------I-------ESLR 62 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE----------------EEECTTT------------T-------TTTT
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE----------------EEecccc------------c-------cccc
Confidence 578899999998877 68999999997654321 1111100 0 0013
Q ss_pred eeEEEEcCCCCEEEEecCC--------CCeEEEEEcCCCceEEEEec---cCcceeEEEEeecCccccccceeEEEEcCC
Q psy2110 84 WKKCCFSGDGEYVCAGSAR--------QHALYIWEKSVGNLVKILHG---TKGELLLDVVEFDGALDCISLAVTCAFNKR 152 (622)
Q Consensus 84 ~~~~~~sp~~~~l~~~~~~--------~~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d 152 (622)
+.+++|||||++|++++.+ ++.|++||+.+++. ..+.. |...+ ..++||||
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~-----------------~~~~~SPd 124 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKL-----------------QYAGWGPK 124 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCC-----------------SBCCBCSS
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccc-----------------cccEECCC
Confidence 4679999999999998753 26899999998876 33432 32224 48899999
Q ss_pred CCEEEEeeCCCcEEEEecCCcccccccccccCCC-ccccc------ccccceEEEEECCCCCEEEEEeCCC---------
Q psy2110 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPE-FDGAL------DCISLAVTCAFNKRGTLLAVGCNDG--------- 216 (622)
Q Consensus 153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~v~~~~~s~~g~~l~~~~~dg--------- 216 (622)
|++||+++. +.|++|++.+++.......+.... ..+.. .....+.+++|||||++|++++.++
T Consensus 125 G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 125 GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence 999999886 799999999887655443322110 00000 0001247899999999999987543
Q ss_pred -------------------------eEEEEEcCCCceEEEeccC------CcCeeEEEEcCCCCEEEEEeC----CCcEE
Q psy2110 217 -------------------------RIVLWDFLTRGIAKIISAH------MHPVCSISWSRNGYKIISAST----DNNVC 261 (622)
Q Consensus 217 -------------------------~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~----d~~i~ 261 (622)
.|++||+.+++....+..+ ...+.+++|+|||++|++... +..|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 283 (723)
T 1xfd_A 204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILT 283 (723)
T ss_dssp CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEE
T ss_pred ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEE
Confidence 7999999988866666654 678999999999998877653 35799
Q ss_pred EEECCCCcEEEEEe--CCCCe----EEEEEeCCCCeEEEE-eeCCC------cEEEEEe-cCCc--eeecccCCCCceE-
Q psy2110 262 IWDVLTGECEQKYR--FPSPI----LKVQFHPRNDHMFLV-CPMRH------AAVLVDT-DGDH--QIVPIDEDSDLSI- 324 (622)
Q Consensus 262 iwd~~~~~~~~~~~--~~~~v----~~~~~~~~~~~~~~~-~~~~~------~i~~~d~-~~~~--~~~~~~~~~~~~~- 324 (622)
+||+.++++...+. +...+ ..++|+|+|+.+++. +..++ .+++||. .+.. ....+......+.
T Consensus 284 ~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~ 363 (723)
T 1xfd_A 284 LCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK 363 (723)
T ss_dssp EEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred EEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEe
Confidence 99999998877654 23333 378999999988876 55666 4666663 3333 1444443333344
Q ss_pred EEEEeeCCCEEEEEecC---CeEEEEeCCCcc--EEEEEec---CCCCEEEEEEcCCCCEEEEEeC
Q psy2110 325 VASFDRRGQHVVTGNSK---GKVLVLSCPALE--LKASFKA---STTAIKSIEFARRGNCLLVNTG 382 (622)
Q Consensus 325 ~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~--~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~ 382 (622)
.++|+|+|+.|+..+.+ +.+++|++.... ....+.. |...+..++|+|+|++|+....
T Consensus 364 ~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred eeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 46899999999766554 788999875422 3333443 5667889999999999887654
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=2.2e-26 Score=250.02 Aligned_cols=330 Identities=12% Similarity=0.091 Sum_probs=220.9
Q ss_pred EEEEcCCCCEEEEecCCCCeEEEEEcCCCceE-EEEeccCcceeEEEEeecC-ccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110 86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLV-KILHGTKGELLLDVVEFDG-ALDCISLAVTCAFNKRGTLLAVGCNDG 163 (622)
Q Consensus 86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~s~~~dg 163 (622)
.+.|+ |+.+++++.+ + | +||+.+++.+ ..+..|..... .....++ .......|.+++|+|| +.++.+. ++
T Consensus 30 ~~~w~--g~~~~~~~~~-~-i-~~d~~tg~~~~~~l~~~~~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 30 GLQWM--GDNYVFIEGD-D-L-VFNKANGKSAQTTRFSAADLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp TCEEE--TTEEEEEETT-E-E-EEEC-------CEEEEHHHHHT-TC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCcCc--CCeEEEEeCC-c-E-EEECCCCcEeeEEeechhHhhh-hccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 46787 5566666644 5 8 9999999873 44444331100 0000000 0000123479999999 6665554 59
Q ss_pred cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-----CceEEEeccCCcC
Q psy2110 164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-----RGIAKIISAHMHP 238 (622)
Q Consensus 164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~ 238 (622)
.|++||+.+++........ ..+..++|+|||++|+++ .++.|++|++.+ ++.......+...
T Consensus 102 ~i~~~d~~~~~~~~l~~~~------------~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~ 168 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLFDTN------------EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET 168 (706)
T ss_dssp EEEEEETTTTEEEEEECCT------------TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT
T ss_pred EEEEEECCCCceEEccCCc------------ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC
Confidence 9999999887654333221 124567999999999986 679999999998 7766544444333
Q ss_pred --------------eeEEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCcEE
Q psy2110 239 --------------VCSISWSRNGYKIISAS---------------------------------TDNNVCIWDVLTGECE 271 (622)
Q Consensus 239 --------------v~~~~~s~~~~~l~s~~---------------------------------~d~~i~iwd~~~~~~~ 271 (622)
+.+++|+|||++|++++ .+..|++||+.+++..
T Consensus 169 ~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 169 LVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp EEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred eEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 48999999999999987 4467999999998876
Q ss_pred EEEe---CCCCeEEEEEeCCCCeEEEEeeCC----CcEEEEEecCCceeeccc--CCC---CceEEEEEee--CCCEEEE
Q psy2110 272 QKYR---FPSPILKVQFHPRNDHMFLVCPMR----HAAVLVDTDGDHQIVPID--EDS---DLSIVASFDR--RGQHVVT 337 (622)
Q Consensus 272 ~~~~---~~~~v~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~--~~~---~~~~~~~~~~--~~~~l~~ 337 (622)
.... +...+.+++|+|+++.++++.... ..+++||+.++.....+. .+. ..+..++|+| +|+++++
T Consensus 249 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~ 328 (706)
T 2z3z_A 249 YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ 328 (706)
T ss_dssp ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE
T ss_pred eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE
Confidence 5542 446689999999999766654432 389999998873322221 111 1235679999 9999999
Q ss_pred EecCCeEEEEeCC-CccEEEEEecCCCCEEE-EEEcCCCCEEEEEeCC-C----cEEEEecccccccCCCCCCCcceeee
Q psy2110 338 GNSKGKVLVLSCP-ALELKASFKASTTAIKS-IEFARRGNCLLVNTGD-R----LIRVYNHQEVLNAGKDGDPEPIQKLQ 410 (622)
Q Consensus 338 ~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~d-~----~i~i~d~~~~~~~~~~~~~~~~~~~~ 410 (622)
++.+|.+++|.+. ++..+..+..+...+.+ ++|+|+++.|++++.+ + .|+.|++.. + ....+.
T Consensus 329 ~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-------~---~~~~l~ 398 (706)
T 2z3z_A 329 SRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-------G---KTKDLT 398 (706)
T ss_dssp ECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-------C---CCEESC
T ss_pred EccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-------C---Cceecc
Confidence 9999988888876 67777888888777877 7999999988776654 3 466666552 1 122222
Q ss_pred ccccceeeeeEEEcCCCCeEEEeeCCC---CeEEEEECCCCe
Q psy2110 411 DLVNKTMWKKCCFSGDGEYVCAGSARQ---HALYIWEKSVGN 449 (622)
Q Consensus 411 ~~~~~~~~~~~~~spdg~~l~~~~~~d---~~i~iwd~~~~~ 449 (622)
....+..++|||||++|+....+. +.|++||+.+++
T Consensus 399 ---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 399 ---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 223456789999999998775423 569999999887
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=7.1e-25 Score=216.02 Aligned_cols=298 Identities=13% Similarity=0.094 Sum_probs=204.3
Q ss_pred EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-CeEEEEEcC--CCc--eE
Q psy2110 155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-GRIVLWDFL--TRG--IA 229 (622)
Q Consensus 155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g~i~iwd~~--~~~--~~ 229 (622)
++++++.++.|++|++........+..... ...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 77 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDV---------PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA 77 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEC---------SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEec---------CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec
Confidence 344447799999999963211111111101 1236789999999999888876 999999997 554 33
Q ss_pred EEeccCCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECC---CCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110 230 KIISAHMHPVCSISWSRNGYKIISAST-DNNVCIWDVL---TGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305 (622)
Q Consensus 230 ~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~ 305 (622)
..+..+. .+..++|+|++++|++++. ++.|.+||+. +.+....+.....+.+++|+|+++.+++++..++.+.+|
T Consensus 78 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 156 (343)
T 1ri6_A 78 AESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLF 156 (343)
T ss_dssp EEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred cccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEE
Confidence 4454443 7899999999998877765 7889999994 444555566667789999999999877777689999999
Q ss_pred EecC-Cceee----ccc-CCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCC--ccE--EEEEec---C---CCCEEEE
Q psy2110 306 DTDG-DHQIV----PID-EDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPA--LEL--KASFKA---S---TTAIKSI 368 (622)
Q Consensus 306 d~~~-~~~~~----~~~-~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~--~~~~~~---~---~~~i~~~ 368 (622)
|+.. +.... ... .....+..++|+|+++++++++ .++.|.+|++.. ++. ...+.. . ...+..+
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 9987 43221 122 2344677899999999776554 789999999953 433 333321 1 2356789
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEE--EC
Q psy2110 369 EFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIW--EK 445 (622)
Q Consensus 369 ~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iw--d~ 445 (622)
+|+|+|++|+++. .++.|++|++... .+....+..+. ....+..++|+|+|++|++++..++.|.+| |.
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~-----~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSED-----GSVLSKEGFQP---TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTT-----SCCEEEEEEEE---CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCC-----CCceEEeeeec---CCCccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 9999999887655 6899999999720 01112222222 222256789999999999988668999999 55
Q ss_pred CCCee--EEEEecCCCCceeEEEECCCCC
Q psy2110 446 SVGNL--VKILHGTKGELLLDVVWHPVRP 472 (622)
Q Consensus 446 ~~~~~--~~~~~~~~~~~v~~v~~sp~~~ 472 (622)
.+++. +..+... ....+++|.|+.+
T Consensus 309 ~~g~~~~~~~~~~g--~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 309 EQGLLHEKGRYAVG--QGPMWVVVNAHEG 335 (343)
T ss_dssp TTTEEEEEEEEECS--SSCCEEEEEEEC-
T ss_pred CCceeeEccccccC--CCCeeEEEEcccC
Confidence 56654 3344432 2277888877643
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=3.5e-24 Score=212.01 Aligned_cols=280 Identities=10% Similarity=0.131 Sum_probs=222.7
Q ss_pred cceeEEEEcCCCCEEEEecCC------CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCE
Q psy2110 82 TMWKKCCFSGDGEYVCAGSAR------QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTL 155 (622)
Q Consensus 82 ~~~~~~~~sp~~~~l~~~~~~------~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 155 (622)
..+..++|+|++++|++++.+ ++.|.+||..+++.+..+...... ..++|+|++++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~------------------~~~~~s~dg~~ 102 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKP------------------FGATINNTTQT 102 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCC------------------CSEEEETTTTE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCc------------------ceEEECCCCCE
Confidence 345679999999999887754 478999999999988888764443 38899999996
Q ss_pred EEE-eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe--CCCeEEEEEcCCCceEEEe
Q psy2110 156 LAV-GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC--NDGRIVLWDFLTRGIAKII 232 (622)
Q Consensus 156 l~s-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~iwd~~~~~~~~~~ 232 (622)
+++ ...++.|.+||..+++....+..+...... ......+.+++|+|+|+++++++ .++.|.+||+.+++....+
T Consensus 103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE--EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS--SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc--ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence 554 455799999999998877766553221100 00011367899999999887776 4788999999999998888
Q ss_pred ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-----CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEe
Q psy2110 233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF-----PSPILKVQFHPRNDHMFLVCPMRHAAVLVDT 307 (622)
Q Consensus 233 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~ 307 (622)
..+...+.+++|+|+|++|++++.++.|.+||+.+++....+.. ...+..++|+|+++.++++...++.+.+||.
T Consensus 181 ~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 260 (353)
T 3vgz_A 181 QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT 260 (353)
T ss_dssp CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 76666789999999999999999999999999999998887764 3457789999999988888877899999999
Q ss_pred cCCceeecccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q psy2110 308 DGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR 384 (622)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 384 (622)
.+.+.+..+..... ..++|+|+|+++++++ .++.|.+||..+++.+..+... ..+.+++|+|+|++|+++..++
T Consensus 261 ~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 261 RNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred CCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 88877666554332 4689999999766655 6899999999999988887754 4678999999999887776553
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=2.2e-24 Score=212.49 Aligned_cols=267 Identities=13% Similarity=0.251 Sum_probs=192.8
Q ss_pred CEEEEecCCCCeEEEEEcC-CCc--eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC-CcEEEEe
Q psy2110 94 EYVCAGSARQHALYIWEKS-VGN--LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND-GRIVLWD 169 (622)
Q Consensus 94 ~~l~~~~~~~~~i~vwd~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g~i~vw~ 169 (622)
+++++++..++.|++|++. +++ .+..+ .|...+ .+++|+|++++|++++.+ +.|++|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~-----------------~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQV-----------------QPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCC-----------------CCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCC-----------------ceEEECCCCCEEEEeecCCCeEEEEE
Confidence 4455543335999999995 342 22222 344444 489999999999988886 9999999
Q ss_pred cC--Ccccc--cccccccCCCcccccccccceEEEEECCCCCEEEEEeC-CCeEEEEEcC---CCceEEEeccCCcCeeE
Q psy2110 170 FL--TRGIA--KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-DGRIVLWDFL---TRGIAKIISAHMHPVCS 241 (622)
Q Consensus 170 ~~--~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~ 241 (622)
+. ++... ..+... ..+..++|+|+|++|++++. ++.|.+|++. +.+....+..+ ..+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~------------~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~ 133 (343)
T 1ri6_A 67 IAPDDGALTFAAESALP------------GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHS 133 (343)
T ss_dssp ECTTTCCEEEEEEEECS------------SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCC
T ss_pred ecCCCCceeeccccccC------------CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceE
Confidence 97 44432 222211 13578899999998877665 8889999994 34445555544 46889
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEECCC-CcEEEE----Ee--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC--Cc
Q psy2110 242 ISWSRNGYKIISAS-TDNNVCIWDVLT-GECEQK----YR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG--DH 311 (622)
Q Consensus 242 ~~~s~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~----~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~ 311 (622)
++|+|++++|++++ .++.|++||+.+ ++.... +. ....+..++|+|+++.+++++..++.+.+|++.. +.
T Consensus 134 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 134 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 213 (343)
T ss_dssp CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred EEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 99999999888887 789999999987 655432 22 3457889999999998888888899999999954 21
Q ss_pred e--eec---ccCC---CCceEEEEEeeCCCEEEEEe-cCCeEEEEeCC----CccEEEEEecCCCCEEEEEEcCCCCEEE
Q psy2110 312 Q--IVP---IDED---SDLSIVASFDRRGQHVVTGN-SKGKVLVLSCP----ALELKASFKASTTAIKSIEFARRGNCLL 378 (622)
Q Consensus 312 ~--~~~---~~~~---~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 378 (622)
. ... +... ...+..++|+|+|++|+++. .++.|.+|++. +.+.+..+..+.. +.+++|+|+|++|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLI 292 (343)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEE
T ss_pred EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEE
Confidence 1 111 1111 23566799999999887544 78999999998 3345555555544 88999999999998
Q ss_pred EEe-CCCcEEEEecc
Q psy2110 379 VNT-GDRLIRVYNHQ 392 (622)
Q Consensus 379 ~~~-~d~~i~i~d~~ 392 (622)
+++ .++.|.+|+++
T Consensus 293 ~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 293 AAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTTCEEEEEEEE
T ss_pred EecCCCCeEEEEEEc
Confidence 887 57999999765
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=9.4e-24 Score=208.90 Aligned_cols=267 Identities=10% Similarity=0.101 Sum_probs=217.0
Q ss_pred ceEEEEECCCCCEEEEEeC-------CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q psy2110 196 LAVTCAFNKRGTLLAVGCN-------DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLT 267 (622)
Q Consensus 196 ~v~~~~~s~~g~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~ 267 (622)
.+..++|+|+|+++++++. ++.|.+||..+++....+... ..+..++|+++|++++.++ .++.|.+||..+
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 120 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKT 120 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence 3678999999999888874 468999999999988877653 4578899999999666554 478999999999
Q ss_pred CcEEEEEeCCC----------CeEEEEEeCCCCeEEEEe-eCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEE
Q psy2110 268 GECEQKYRFPS----------PILKVQFHPRNDHMFLVC-PMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVV 336 (622)
Q Consensus 268 ~~~~~~~~~~~----------~v~~~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 336 (622)
++.+..+.... .+.+++|+|+++.++++. ..++.+.+||..+......+..+...+..++|+|+|++++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 200 (353)
T 3vgz_A 121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLY 200 (353)
T ss_dssp CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEE
T ss_pred CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEE
Confidence 99988887432 268899999999877776 4578899999998888777775566677899999999999
Q ss_pred EEecCCeEEEEeCCCccEEEEEec----CCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCCCCCCcceeeec
Q psy2110 337 TGNSKGKVLVLSCPALELKASFKA----STTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDGDPEPIQKLQD 411 (622)
Q Consensus 337 ~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 411 (622)
+++.++.|.+||+.+++.+..+.. +...+.+++|+|+++++++++. ++.|.+||+.. .+.+..+..
T Consensus 201 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~---------~~~~~~~~~ 271 (353)
T 3vgz_A 201 TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN---------GNILAKVAA 271 (353)
T ss_dssp EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT---------CCEEEEEEC
T ss_pred EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC---------CcEEEEEEc
Confidence 999999999999999998887774 5566889999999998877765 58999999973 233344432
Q ss_pred cccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110 412 LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS 478 (622)
Q Consensus 412 ~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~ 478 (622)
.. ...++|+|+|++++++...++.|.+||..+++.+..+..+. . +.+++|+|++++|+.+.
T Consensus 272 ~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 272 PE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-H-PNSLALSADGKTLYVSV 332 (353)
T ss_dssp SS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-E-EEEEEECTTSCEEEEEE
T ss_pred CC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-C-CCeEEEcCCCCEEEEEE
Confidence 21 14589999999887777668999999999999988887654 3 89999999999777665
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=3.5e-24 Score=210.00 Aligned_cols=275 Identities=14% Similarity=0.098 Sum_probs=201.8
Q ss_pred EECCCCCE-EEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcE-EEEEeCC
Q psy2110 201 AFNKRGTL-LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST-DNNVCIWDVLTGEC-EQKYRFP 277 (622)
Q Consensus 201 ~~s~~g~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~~ 277 (622)
.|.+++++ +++++.++.|.+||+.+++....+..+...+ .++|+|+|+++++++. ++.|++||+.+++. ...+...
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45555555 6677788999999999999888887766667 9999999997777766 78999999999987 6666644
Q ss_pred CCeEE-EEEeCCCCeEEEEeeCC-C--cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEE-ecCCe-EEEEeCCC
Q psy2110 278 SPILK-VQFHPRNDHMFLVCPMR-H--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTG-NSKGK-VLVLSCPA 351 (622)
Q Consensus 278 ~~v~~-~~~~~~~~~~~~~~~~~-~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~-i~i~d~~~ 351 (622)
..... ++|+|+++.++ ++..+ + .+.+||+.+...+..+..+ .....++|+|+|++++++ ..++. |.+|++..
T Consensus 83 ~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp SSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 44455 99999999766 44444 3 8999999988776665543 345899999999866554 55577 99999875
Q ss_pred ccEE----EEEecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCc---ceeeeccccceeeeeEEE
Q psy2110 352 LELK----ASFKASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEP---IQKLQDLVNKTMWKKCCF 423 (622)
Q Consensus 352 ~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 423 (622)
...+ ............++|+|+|+++++++ .++.|++||+.. ... +..+. .......++|
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~---------~~~~~~~~~~~---~~~~~~~~~~ 228 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN---------PENITLLNAVG---TNNLPGTIVV 228 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS---------TTSCEEEEEEE---CSSCCCCEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC---------Ccccceeeecc---CCCCCceEEE
Confidence 4322 12223445689999999999776665 588999999873 222 33333 2244467899
Q ss_pred cCCCCeEEEeeCCCCeEEEEECCCCee--EEEEecC----CC--CceeEEEECCCCCEEEEEe--CCcEEEeecCCc
Q psy2110 424 SGDGEYVCAGSARQHALYIWEKSVGNL--VKILHGT----KG--ELLLDVVWHPVRPIIASIS--SGVVSLWAQNQV 490 (622)
Q Consensus 424 spdg~~l~~~~~~d~~i~iwd~~~~~~--~~~~~~~----~~--~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~~~ 490 (622)
+|||++|+++...++.|.+||+.+++. +..+..+ .. .....++|+|++++|+.++ ++.|.+|++...
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 999998887766578899999999887 4444332 11 1134589999999887665 679999999743
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=9.7e-25 Score=237.08 Aligned_cols=324 Identities=11% Similarity=0.056 Sum_probs=223.7
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCcccc-cccccccCC------CcccccccccceEEEEECCCCCEEEEEeCCCeE
Q psy2110 146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA-KIISAHMHP------EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRI 218 (622)
Q Consensus 146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 218 (622)
.+.|. |..+++++.++ | +||+.+++.+ ..+..+... ...........+.+++|+|| +.++.+. ++.|
T Consensus 30 ~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i 103 (706)
T 2z3z_A 30 GLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGL 103 (706)
T ss_dssp TCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEE
T ss_pred CCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEE
Confidence 56777 66777777777 8 9999998773 333222100 00000000124789999999 6666664 5999
Q ss_pred EEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-----CcEEEEEeCCCC--------------
Q psy2110 219 VLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT-----GECEQKYRFPSP-------------- 279 (622)
Q Consensus 219 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~-------------- 279 (622)
++||+.+++... +..+...+.+++|+|||++|+++ .++.|++||+.+ ++..+.......
T Consensus 104 ~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~ 181 (706)
T 2z3z_A 104 VGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFG 181 (706)
T ss_dssp EEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTT
T ss_pred EEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcC
Confidence 999998876544 44567789999999999999996 579999999998 877665443322
Q ss_pred -eEEEEEeCCCCeEEEEee--------------------------------CCCcEEEEEecCCceeecc--cCCCCceE
Q psy2110 280 -ILKVQFHPRNDHMFLVCP--------------------------------MRHAAVLVDTDGDHQIVPI--DEDSDLSI 324 (622)
Q Consensus 280 -v~~~~~~~~~~~~~~~~~--------------------------------~~~~i~~~d~~~~~~~~~~--~~~~~~~~ 324 (622)
+.++.|+||++.++++.. .+..+++||+.++...... ..+...+.
T Consensus 182 ~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 261 (706)
T 2z3z_A 182 IEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT 261 (706)
T ss_dssp CCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE
T ss_pred CCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe
Confidence 478999999997766652 3457999999887654433 24566788
Q ss_pred EEEEeeCCCEEEEEecCC-----eEEEEeCCCccEEEEEe--cCCC---CEEEEEEcC--CCCEEEEEeCCCcEEEEecc
Q psy2110 325 VASFDRRGQHVVTGNSKG-----KVLVLSCPALELKASFK--ASTT---AIKSIEFAR--RGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 325 ~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~--~~~~---~i~~~~~s~--~~~~l~~~~~d~~i~i~d~~ 392 (622)
.++|+|+|++|++++.++ .|++||+.+++....+. .+.. .+.+++|+| +|+++++++.++.+++|.++
T Consensus 262 ~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 262 NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 999999999999987765 89999999984333332 2222 246789999 99999888889999999876
Q ss_pred cccccCCCCCCCcceeeeccccceeeee-EEEcCCCCeEEEeeCCCC----eEEEEECCCCeeEEEEecCCCCceeEEEE
Q psy2110 393 EVLNAGKDGDPEPIQKLQDLVNKTMWKK-CCFSGDGEYVCAGSARQH----ALYIWEKSVGNLVKILHGTKGELLLDVVW 467 (622)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~spdg~~l~~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v~~v~~ 467 (622)
. ....+..+... ...+.. ++|+|||+.|+.++.+++ .|+.||..+++ ...+. +... +.+++|
T Consensus 342 ~--------~~~~~~~l~~~--~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~-~~~~~~ 408 (706)
T 2z3z_A 342 T--------TGRLIRQVTKG--EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESG-MHRTQL 408 (706)
T ss_dssp T--------TSCEEEECCCS--SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSS-EEEEEE
T ss_pred C--------CCCEEEecCCC--CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCc-eEEEEE
Confidence 2 11223333222 223344 699999999887776554 78888888776 34444 4444 899999
Q ss_pred CCCCCEEEEEe-C----CcEEEeecCCc
Q psy2110 468 HPVRPIIASIS-S----GVVSLWAQNQV 490 (622)
Q Consensus 468 sp~~~~l~s~~-d----g~v~iw~~~~~ 490 (622)
+|++++|+... + +.|++|++.+.
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred CCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 99999887764 3 56999998643
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=3.7e-24 Score=205.92 Aligned_cols=250 Identities=10% Similarity=0.109 Sum_probs=194.5
Q ss_pred CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCC-ccccccccc
Q psy2110 103 QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAKIISA 181 (622)
Q Consensus 103 ~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~-~~~~~~~~~ 181 (622)
++.|++||+.+++.. .+..|...+ .+++|+|++++|++++ ++.|++||+.+ ++.......
T Consensus 21 ~~~i~~~d~~~~~~~-~~~~~~~~v-----------------~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~ 81 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMR-VVWQTPELF-----------------EAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG 81 (297)
T ss_dssp CEEEEEEETTTTEEE-EEEEESSCC-----------------EEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT
T ss_pred ceeEEEEeCCCCcee-eeccCCcce-----------------EeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc
Confidence 589999999988766 455577666 5999999999999987 78999999998 766554433
Q ss_pred ccCCCcccccccccceEEEEECCCCCEEEEEeC--CCeEEEEE--cCCCceEEEeccCCcCeeEEEEcCCCCEEE-EEeC
Q psy2110 182 HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN--DGRIVLWD--FLTRGIAKIISAHMHPVCSISWSRNGYKII-SAST 256 (622)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iwd--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~ 256 (622)
+.. ..+.+++|+|+|++|++++. ++...+|. +.++. ...+..+ ..+..++|+|++++|+ +++.
T Consensus 82 ~~~----------~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 82 FAT----------ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp TCC----------CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEE
T ss_pred ccc----------ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECC
Confidence 311 23677899999999999983 34455554 44444 4445444 3489999999999887 6778
Q ss_pred CCcEEEEEC--CCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec-CCceeecccCCCCceEEEEEeeCCC
Q psy2110 257 DNNVCIWDV--LTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD-GDHQIVPIDEDSDLSIVASFDRRGQ 333 (622)
Q Consensus 257 d~~i~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (622)
++.+++|++ .+++......+...+.+++|+|+++.+++++..++.+.+|++. .......+..+...+..++|+|+|+
T Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD 229 (297)
T ss_dssp TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS
T ss_pred CCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC
Confidence 898888885 4555555555778899999999999877777778899999987 4556666777777888999999999
Q ss_pred EEEEEecC-----------CeEEEEeCCCccE--EEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q psy2110 334 HVVTGNSK-----------GKVLVLSCPALEL--KASFKASTTAIKSIEFARRGNCLLVNTGD 383 (622)
Q Consensus 334 ~l~~~~~d-----------g~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 383 (622)
+|++++.+ +.|++||+.+++. +..+..|...+.+++|+|++++|++++.+
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 99888765 5699999988765 44455788889999999999999988765
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=1.5e-23 Score=205.85 Aligned_cols=277 Identities=11% Similarity=0.087 Sum_probs=211.3
Q ss_pred CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEE-EEeCCCeEEEEEcCCCceEEEe
Q psy2110 154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGRIVLWDFLTRGIAKII 232 (622)
Q Consensus 154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~i~iwd~~~~~~~~~~ 232 (622)
++|++++.++.|++||+.+++....+...... ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---------~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 72 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAG---------PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCT---------TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCC---------CCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeE
Confidence 47899999999999999998777665433210 0146789999998765 4555789999999999887766
Q ss_pred ccC-----CcCeeEEEEcCCCCEEEEEe------------CCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEE
Q psy2110 233 SAH-----MHPVCSISWSRNGYKIISAS------------TDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLV 295 (622)
Q Consensus 233 ~~~-----~~~v~~~~~s~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 295 (622)
... ...+.+++|+|+|++|++++ .++.|.+||+.+++....+.....+..++|+|+++.++++
T Consensus 73 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp ECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE
T ss_pred EcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe
Confidence 532 22678899999999999886 5799999999999988888877778899999999876666
Q ss_pred eeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCC------------------------eEEEEeCCC
Q psy2110 296 CPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKG------------------------KVLVLSCPA 351 (622)
Q Consensus 296 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------------------------~i~i~d~~~ 351 (622)
++.+.+||+.+......+..+... ..+.|+|+++.++..+..+ .|.+||+.+
T Consensus 153 ---~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 153 ---GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp ---SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred ---CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 688999999988766555443311 1226789988766544332 478999998
Q ss_pred ccEE-EEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeE
Q psy2110 352 LELK-ASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYV 430 (622)
Q Consensus 352 ~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 430 (622)
++.. ..+..+...+.+++|+|++++++++ ++.|++||+.. .+.+..+.. .....+++|+|+|++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~---------~~~~~~~~~---~~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 229 GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK---------NASIKRVPL---PHSYYSVNVSTDGSTV 294 (337)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT---------TEEEEEEEC---SSCCCEEEECTTSCEE
T ss_pred CCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC---------CcCcceecC---CCceeeEEECCCCCEE
Confidence 8864 2344566778899999999998888 78999999873 233333332 2234678999999999
Q ss_pred EEeeCCCCeEEEEECCCCeeEEEEecCC
Q psy2110 431 CAGSARQHALYIWEKSVGNLVKILHGTK 458 (622)
Q Consensus 431 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 458 (622)
++++. ++.|++||+.+++.+..+..+.
T Consensus 295 ~~~~~-~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 295 WLGGA-LGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEESB-SSEEEEEETTTCCEEEEEECGG
T ss_pred EEEcC-CCcEEEEECcCCcEEEEEEcCC
Confidence 98876 8999999999999988887653
No 147
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=234.71 Aligned_cols=329 Identities=11% Similarity=0.080 Sum_probs=228.2
Q ss_pred EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcc---eeEEEEeecCccccccceeEEEEcCCCCEEEEeeC-
Q psy2110 86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE---LLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN- 161 (622)
Q Consensus 86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~- 161 (622)
.++|+|||++++++. ++.|++||+.+++....+.+|... + .+++|||||++|++++.
T Consensus 20 ~~~~s~dg~~~~~~~--d~~i~~~~~~~g~~~~~~~~~~~~~~~~-----------------~~~~~SpDg~~la~~~~~ 80 (719)
T 1z68_A 20 FPNWISGQEYLHQSA--DNNIVLYNIETGQSYTILSNRTMKSVNA-----------------SNYGLSPDRQFVYLESDY 80 (719)
T ss_dssp CCEESSSSEEEEECT--TSCEEEEESSSCCEEEEECHHHHHTTTC-----------------SEEEECTTSSEEEEEEEE
T ss_pred ccEECCCCeEEEEcC--CCCEEEEEcCCCcEEEEEccccccccce-----------------eeEEECCCCCeEEEEecC
Confidence 589999997666653 489999999999988777766441 3 59999999999998876
Q ss_pred --------CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe-
Q psy2110 162 --------DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII- 232 (622)
Q Consensus 162 --------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~- 232 (622)
++.|++||+.+++.+...... ..+..++|||||+.|+++. ++.|++|++.+++..+..
T Consensus 81 ~~~~~~s~~~~i~~~d~~~g~~~~~~~l~------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~ 147 (719)
T 1z68_A 81 SKLWRYSYTATYYIYDLSNGEFVRGNELP------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITF 147 (719)
T ss_dssp EECSSSCEEEEEEEEETTTTEECCSSCCC------------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCC
T ss_pred ceeEEeecceEEEEEECCCCccccceecC------------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEec
Confidence 789999999988662111111 1356789999999999886 789999999888765433
Q ss_pred ccCCcCe-----------------eEEEEcCCCCEEEEEeCCC----------------------------------cEE
Q psy2110 233 SAHMHPV-----------------CSISWSRNGYKIISASTDN----------------------------------NVC 261 (622)
Q Consensus 233 ~~~~~~v-----------------~~~~~s~~~~~l~s~~~d~----------------------------------~i~ 261 (622)
.++...| .+++|||||++|++++.|. .|+
T Consensus 148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~ 227 (719)
T 1z68_A 148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF 227 (719)
T ss_dssp CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence 2222222 4899999999999987652 788
Q ss_pred EEECCCCcEE---EEE------eCCCCeEEEEEeCCCCeEEEEeeCC----CcEEEEE----ecCCceeecc----cCCC
Q psy2110 262 IWDVLTGECE---QKY------RFPSPILKVQFHPRNDHMFLVCPMR----HAAVLVD----TDGDHQIVPI----DEDS 320 (622)
Q Consensus 262 iwd~~~~~~~---~~~------~~~~~v~~~~~~~~~~~~~~~~~~~----~~i~~~d----~~~~~~~~~~----~~~~ 320 (622)
+||+.+++.. ... .+...+..++|+||++ ++++.... ..+.+|| ..++.....+ ..+.
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~ 306 (719)
T 1z68_A 228 IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT 306 (719)
T ss_dssp EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS
T ss_pred EEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC
Confidence 9999988752 211 1455689999999964 55553322 2488889 6665544444 3455
Q ss_pred CceE-----EEEEeeCCCEEEE--EecCC--eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-----CcE
Q psy2110 321 DLSI-----VASFDRRGQHVVT--GNSKG--KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD-----RLI 386 (622)
Q Consensus 321 ~~~~-----~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i 386 (622)
..+. .+.|+|+|+.++. ...+| .|.+|++.+++ ...+..+...+..+.++ +++.|+..+.+ +.+
T Consensus 307 ~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 307 GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 5554 7889999986654 43444 67788887776 44565666678888878 88888877765 788
Q ss_pred EEEecccccccCCCCCCCcceeeec-cc-cceeeeeEEEcCCCCeEEEeeCC--CCeEEEEECCCCeeEEEEe
Q psy2110 387 RVYNHQEVLNAGKDGDPEPIQKLQD-LV-NKTMWKKCCFSGDGEYVCAGSAR--QHALYIWEKSVGNLVKILH 455 (622)
Q Consensus 387 ~i~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~spdg~~l~~~~~~--d~~i~iwd~~~~~~~~~~~ 455 (622)
++|.+... .+.. ....+.. .. ....+..+.|+|||++++..... ...+++||+.+++.+..+.
T Consensus 385 ~l~~~~~~-----~g~~-~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 385 NIYRISIG-----SYPP-SKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp EEEEEECS-----SSSC-CEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred EEEEEeCC-----CCCC-CceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 89987620 0000 1122221 11 12334567999999988865432 2478999998888666554
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=1.1e-23 Score=206.77 Aligned_cols=269 Identities=12% Similarity=0.108 Sum_probs=206.9
Q ss_pred CEEEEecCCCCeEEEEEcCCCceEEEEeccCc--ceeEEEEeecCccccccceeEEEEcCCCCEEE-EeeCCCcEEEEec
Q psy2110 94 EYVCAGSARQHALYIWEKSVGNLVKILHGTKG--ELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGRIVLWDF 170 (622)
Q Consensus 94 ~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~vw~~ 170 (622)
++|++++.+ +.|.+||+.+++.+..+..... .+ ..++|+|++++++ +++.++.|.+||+
T Consensus 2 ~~~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~~~~~v~~~d~ 63 (337)
T 1pby_B 2 DYILAPARP-DKLVVIDTEKMAVDKVITIADAGPTP-----------------MVPMVAPGGRIAYATVNKSESLVKIDL 63 (337)
T ss_dssp EEEEEEETT-TEEEEEETTTTEEEEEEECTTCTTCC-----------------CCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred cEEEEcCCC-CeEEEEECCCCcEEEEEEcCCCCCCc-----------------cceEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 467777765 8999999999998888764431 23 4899999998664 5556789999999
Q ss_pred CCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe------------CCCeEEEEEcCCCceEEEeccCCcC
Q psy2110 171 LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC------------NDGRIVLWDFLTRGIAKIISAHMHP 238 (622)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~ 238 (622)
.+++....+........ ...+..++|+|+|++|+++. .++.|.+||+.+++....+.. ...
T Consensus 64 ~~~~~~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~ 136 (337)
T 1pby_B 64 VTGETLGRIDLSTPEER------VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQ 136 (337)
T ss_dssp TTCCEEEEEECCBTTEE------EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSS
T ss_pred CCCCeEeeEEcCCcccc------cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCC
Confidence 99877665543210000 01245789999999998886 579999999999888777765 456
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC------------------
Q psy2110 239 VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH------------------ 300 (622)
Q Consensus 239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------------ 300 (622)
+.+++|+|+|++|+++ ++.|++||+.+++....+........+.|+|++..+++++..++
T Consensus 137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 137 ITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214 (337)
T ss_dssp CCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred cceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence 7889999999988888 68999999999998887764332223478999887666554444
Q ss_pred -----cEEEEEecCCcee-ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC
Q psy2110 301 -----AAVLVDTDGDHQI-VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG 374 (622)
Q Consensus 301 -----~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~ 374 (622)
.+.+||+.+.+.. ..+..+...+..++|+|+|++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|
T Consensus 215 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg 291 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDG 291 (337)
T ss_dssp GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTS
T ss_pred cccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCC
Confidence 3688898876543 2333455567789999999999988 689999999999888877754 457899999999
Q ss_pred CEEEEEeCCCcEEEEecc
Q psy2110 375 NCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 375 ~~l~~~~~d~~i~i~d~~ 392 (622)
++|++++.++.|++||+.
T Consensus 292 ~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 292 STVWLGGALGDLAAYDAE 309 (337)
T ss_dssp CEEEEESBSSEEEEEETT
T ss_pred CEEEEEcCCCcEEEEECc
Confidence 999999889999999998
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.9e-23 Score=201.05 Aligned_cols=257 Identities=10% Similarity=0.052 Sum_probs=194.5
Q ss_pred EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceEEEeccC-
Q psy2110 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAKIISAH- 235 (622)
Q Consensus 158 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~- 235 (622)
.++.++.|++||+.+++...... +. ..+.+++|+|+|++|++++ ++.|++||+.+ ++.......+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~-~~-----------~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQ-TP-----------ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEE-ES-----------SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC
T ss_pred CCCcceeEEEEeCCCCceeeecc-CC-----------cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc
Confidence 45678999999999876553332 22 3578999999999999986 78999999999 8777666665
Q ss_pred CcCeeEEEEcCCCCEEEEEeC--CC--cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC-C
Q psy2110 236 MHPVCSISWSRNGYKIISAST--DN--NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG-D 310 (622)
Q Consensus 236 ~~~v~~~~~s~~~~~l~s~~~--d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~ 310 (622)
...+.+++|+|++++|++++. ++ .|..|+..+++ ...+.....+..++|+|+++.+++++..++.+.+|++.. .
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~ 162 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS 162 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT
T ss_pred cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCC
Confidence 367899999999999999983 33 45555555555 344455556899999999998888888899999998753 3
Q ss_pred ceeecccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCC-CccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-----
Q psy2110 311 HQIVPIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCP-ALELKASFKASTTAIKSIEFARRGNCLLVNTGD----- 383 (622)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----- 383 (622)
.....+..+...+..++|+|+|+++++++ .++.+.+|++. .+.....+..+...+.+++|+|+|++|++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 34455666777889999999999888766 58889999876 556677777888889999999999999988765
Q ss_pred ------CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCC
Q psy2110 384 ------RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQ 437 (622)
Q Consensus 384 ------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d 437 (622)
+.|++||+.. +....+..+.. ....+..++|+|+|++|++++.++
T Consensus 243 ~~~~~~~~l~~~d~~~-------~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDG-------GNVETLFDLFG--GQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CCSSEEEEEEEEETTS-------CSCEEEEEEEE--STTTSCSCCBCTTSSEEEEEEECC
T ss_pred ccccCceEEEEEecCC-------CCceeeeccCC--CCcccccceECCCCCEEEEEEecc
Confidence 5699999873 12222222222 223456679999999999888644
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=8.8e-22 Score=195.33 Aligned_cols=298 Identities=11% Similarity=0.128 Sum_probs=200.9
Q ss_pred EcCCCCEEEEee----CCCcEEEEecC--CcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC----CeE
Q psy2110 149 FNKRGTLLAVGC----NDGRIVLWDFL--TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND----GRI 218 (622)
Q Consensus 149 ~s~d~~~l~s~~----~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~i 218 (622)
..+...++++|+ .++.|.+|.+. +++.......+. ..+..++|+|+|++|++++.+ +.|
T Consensus 9 ~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~-----------~~p~~l~~spdg~~l~~~~~~~~~~~~v 77 (361)
T 3scy_A 9 TTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV-----------ANPSYLIPSADGKFVYSVNEFSKDQAAV 77 (361)
T ss_dssp GGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC-----------SCCCSEEECTTSSEEEEEECCSSTTCEE
T ss_pred hCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC-----------CCCceEEECCCCCEEEEEEccCCCCCcE
Confidence 344445666664 45689999774 443322221111 235678999999999998875 799
Q ss_pred EEEEcCC--Cce--EEEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEE----EEEeC-----------CC
Q psy2110 219 VLWDFLT--RGI--AKIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGECE----QKYRF-----------PS 278 (622)
Q Consensus 219 ~iwd~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~----~~~~~-----------~~ 278 (622)
.+|++.. ++. +.....+......+++ ++++|++++ .++.|.+|++.....+ ..+.+ ..
T Consensus 78 ~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~ 155 (361)
T 3scy_A 78 SAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMP 155 (361)
T ss_dssp EEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSC
T ss_pred EEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCC
Confidence 9999876 332 3334445566778888 888888776 5789999999754322 11111 12
Q ss_pred CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce------e-------ecccCCCCceEEEEEeeCCCEEEEEe-cCCeE
Q psy2110 279 PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ------I-------VPIDEDSDLSIVASFDRRGQHVVTGN-SKGKV 344 (622)
Q Consensus 279 ~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i 344 (622)
.+.+++|+|+++.++++...++.+.+|++..... + ............++|+|+|+++++++ .++.|
T Consensus 156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 235 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV 235 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence 3578999999998888887889999999875431 1 11223345567899999999888777 68999
Q ss_pred EEEeCCCccE--EEEEe---cCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEecccccccCCCCCCCcceeeecccccee
Q psy2110 345 LVLSCPALEL--KASFK---ASTTAIKSIEFARRGNCLLVNTGD--RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM 417 (622)
Q Consensus 345 ~i~d~~~~~~--~~~~~---~~~~~i~~~~~s~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (622)
.+|++.+++. +..+. .+......++|+|+|++|+++..+ +.|.+|++... .+....+..+.. ...
T Consensus 236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-----~g~~~~~~~~~~---g~~ 307 (361)
T 3scy_A 236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-----NGTLTKVGYQLT---GIH 307 (361)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-----TCCEEEEEEEEC---SSC
T ss_pred EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-----CCcEEEeeEecC---CCC
Confidence 9999987754 33332 233457899999999998777654 88999998620 112122222222 233
Q ss_pred eeeEEEcCCCCeEEEeeCCCCeEEEE--ECCCCeeEEEEec-CCCCceeEEEEC
Q psy2110 418 WKKCCFSGDGEYVCAGSARQHALYIW--EKSVGNLVKILHG-TKGELLLDVVWH 468 (622)
Q Consensus 418 ~~~~~~spdg~~l~~~~~~d~~i~iw--d~~~~~~~~~~~~-~~~~~v~~v~~s 468 (622)
...++|+|||++|++++..++.|.+| |..+|++...... +... +.|++|.
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~-p~~v~~~ 360 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK-PVCLKFV 360 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS-EEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC-CeEEEEc
Confidence 45789999999999998668899996 5557776544322 2233 8888885
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=6.1e-22 Score=195.47 Aligned_cols=267 Identities=11% Similarity=0.046 Sum_probs=194.2
Q ss_pred EEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCc-ceeEEEEeecCccccccceeEEEEcCCCCEEE-EeeCCCc
Q psy2110 87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKG-ELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGR 164 (622)
Q Consensus 87 ~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~ 164 (622)
++++++++++++++.+ +.|++||+.+++.+..+..+.. .. ..++|+|++++++ ++..++.
T Consensus 5 ~~~~~~~~~~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~-----------------~~~~~s~dg~~~~v~~~~~~~ 66 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYP-NNLHVVDVASDTVYKSCVMPDKFGP-----------------GTAMMAPDNRTAYVLNNHYGD 66 (349)
T ss_dssp CCCCTTCEEEEEEETT-TEEEEEETTTTEEEEEEECSSCCSS-----------------CEEEECTTSSEEEEEETTTTE
T ss_pred ccccCCCEEEEEeCCC-CeEEEEECCCCcEEEEEecCCCCCC-----------------ceeEECCCCCEEEEEeCCCCc
Confidence 5788899999988865 8999999999999888876541 22 4899999998665 5556899
Q ss_pred EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC------------CeEEEEEcCCCce---E
Q psy2110 165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND------------GRIVLWDFLTRGI---A 229 (622)
Q Consensus 165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------------g~i~iwd~~~~~~---~ 229 (622)
|.+||+.+++....+.....+... ...+..++|+|+|++|++++.+ +.|.+||+.+++. +
T Consensus 67 i~~~d~~t~~~~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 141 (349)
T 1jmx_B 67 IYGIDLDTCKNTFHANLSSVPGEV-----GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 141 (349)
T ss_dssp EEEEETTTTEEEEEEESCCSTTEE-----EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred EEEEeCCCCcEEEEEEcccccccc-----cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence 999999988766555432210000 0125678999999999998865 8999999988543 3
Q ss_pred EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-------------------------CeEEEE
Q psy2110 230 KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPS-------------------------PILKVQ 284 (622)
Q Consensus 230 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------~v~~~~ 284 (622)
..+.. ...+.+++|+|+|+ +++++ +.|.+||+.+++....+.... ....++
T Consensus 142 ~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 142 RTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp EEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred eeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 33433 34688999999999 66654 459999999999888776332 234455
Q ss_pred EeCCCCe----------EEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEee-CCCEEEEEecCCeEEEEeCCCcc
Q psy2110 285 FHPRNDH----------MFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALE 353 (622)
Q Consensus 285 ~~~~~~~----------~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~ 353 (622)
+++++.. ++......+.+.+++.. .....+..++++| ++++++++ ++.|.+||+.+++
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA---------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEE---------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEecccc---------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 6554321 11123334445555442 2445677899999 99999988 7899999999999
Q ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 354 LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 354 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
.+..+... ..+.+++|+|++++|++++.++.|++||+.
T Consensus 287 ~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 287 LIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp EEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred EEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecc
Confidence 88877644 456799999999999988889999999997
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=1.6e-21 Score=192.29 Aligned_cols=267 Identities=11% Similarity=0.151 Sum_probs=184.7
Q ss_pred CCeEEEEEcC--CCceEE-EeccCCcCeeEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEE--EEE-eCCCCeEEEEE
Q psy2110 215 DGRIVLWDFL--TRGIAK-IISAHMHPVCSISWSRNGYKIISAST---DNNVCIWDVLTGECE--QKY-RFPSPILKVQF 285 (622)
Q Consensus 215 dg~i~iwd~~--~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~--~~~-~~~~~v~~~~~ 285 (622)
++.|.+|.++ +++... ....+...+..++|+|+|+ |++++. ++.|++|++.+++.. ..+ .+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 4567777765 454432 2334556778899999999 665554 589999999877643 332 25677889999
Q ss_pred eCCCCeEEEEeeCCCcEEEEEecCC---ceeecccC---------CCCceEEEEEeeCCCEEEEEecCCeEEEEeCC-Cc
Q psy2110 286 HPRNDHMFLVCPMRHAAVLVDTDGD---HQIVPIDE---------DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP-AL 352 (622)
Q Consensus 286 ~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~ 352 (622)
+|+++.++++...++.+.+|++... ..+..+.. ....+.+++|+|+|+++++...++.|.+|++. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 9999987777778899999999632 22222221 12347789999999966666678899999998 55
Q ss_pred cEEE--EEec-CCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccccCCCCCCCcceeeecccc----ceeeeeEEEc
Q psy2110 353 ELKA--SFKA-STTAIKSIEFARRGNCLLVN-TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN----KTMWKKCCFS 424 (622)
Q Consensus 353 ~~~~--~~~~-~~~~i~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s 424 (622)
+... .+.. .......++|+|+|++|+++ ..++.|++|++... .+....+..+..... ......++|+
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 248 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-----TGAFTQLGIVKTIPADYTAHNGAAAIRLS 248 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-----TTEEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-----CCceEEeeeeeecCCCCCCCCcceeEEEC
Confidence 5332 2232 23467889999999977765 55789999998720 011111222222211 1345678999
Q ss_pred CCCCeEEEeeCCCCeEEEEECCC-C--eeEEEEecCCCCceeEEEECCCCCEEEEEe--CCcEEEeecC
Q psy2110 425 GDGEYVCAGSARQHALYIWEKSV-G--NLVKILHGTKGELLLDVVWHPVRPIIASIS--SGVVSLWAQN 488 (622)
Q Consensus 425 pdg~~l~~~~~~d~~i~iwd~~~-~--~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~ 488 (622)
|||++|+++...++.|.+|++.. + +.+..+..+... +..++|+|++++|++++ ++.|.+|+++
T Consensus 249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~-~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF-PRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC-CCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC-cCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 99999866655588999999873 2 455556655444 89999999999888887 5899999764
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=7.1e-23 Score=216.90 Aligned_cols=270 Identities=12% Similarity=0.028 Sum_probs=199.6
Q ss_pred ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccC-cceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110 81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK-GELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG 159 (622)
Q Consensus 81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 159 (622)
...+.+++|+|||++||+++..+|++.||++.+++.. .+..|. ..+ ..++|+|| ++++++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~-----------------~~~~~spd-~~l~~~ 81 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSV-----------------LDPHYGVG-RVILVR 81 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEE-----------------CEECTTCS-EEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeeccccccc-----------------ccccCCCC-eEEEEe
Confidence 3457789999999999998874699999999766554 444444 455 58999999 777777
Q ss_pred eC---CCcEEEEecCC--cccccccccccCCCcccccccccceEEEEECCCCCE-EEEEeCCCeEEEEEcCCCceEEEec
Q psy2110 160 CN---DGRIVLWDFLT--RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL-LAVGCNDGRIVLWDFLTRGIAKIIS 233 (622)
Q Consensus 160 ~~---dg~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~i~iwd~~~~~~~~~~~ 233 (622)
+. +...++|.+.. ......+.... .+...+|+|+|+. +++...++.+.+||+.+++......
T Consensus 82 ~~~~g~~~~~l~~~~~~~~g~~~~l~~~~------------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~ 149 (582)
T 3o4h_A 82 DVSKGAEQHALFKVNTSRPGEEQRLEAVK------------PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR 149 (582)
T ss_dssp ECSTTSCCEEEEEEETTSTTCCEECTTSC------------SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred ccCCCCcceEEEEEeccCCCccccccCCC------------CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec
Confidence 65 45567765543 21111221111 1335578888753 3334445556699999887665554
Q ss_pred cCCcCeeEEEEcCCCCEEEEEeCC----CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC--cEEEEEe
Q psy2110 234 AHMHPVCSISWSRNGYKIISASTD----NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH--AAVLVDT 307 (622)
Q Consensus 234 ~~~~~v~~~~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~i~~~d~ 307 (622)
.+. .+++|+|||++|++++.+ +.|++||+.+++......+...+..++|+|||+.++ ++..++ .|++||+
T Consensus 150 ~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~ 225 (582)
T 3o4h_A 150 LPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTA-GLETAREARLVTVDP 225 (582)
T ss_dssp ESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEEECT
T ss_pred CCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEE-EccCCCeeEEEEEcC
Confidence 333 889999999999988877 789999999998876666778899999999999766 667777 8999999
Q ss_pred cCCceeecccCCCCceEEEE--------EeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy2110 308 DGDHQIVPIDEDSDLSIVAS--------FDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLV 379 (622)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 379 (622)
.++... .+..+...+..++ |+|+|.++++++.+|.+++|++ ++... .....+.+++|+ +++++++
T Consensus 226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~ 298 (582)
T 3o4h_A 226 RDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTS 298 (582)
T ss_dssp TTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEE
T ss_pred CCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEE
Confidence 887766 6666666666566 9999999999999999999999 66544 344678899999 9998888
Q ss_pred EeCCCc---EEEEecc
Q psy2110 380 NTGDRL---IRVYNHQ 392 (622)
Q Consensus 380 ~~~d~~---i~i~d~~ 392 (622)
++.+.. +++|+..
T Consensus 299 ~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 299 HTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEETTEEEEEEEETTC
T ss_pred EcCCCCCCeEEEEcCC
Confidence 877644 6666654
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=1.5e-22 Score=214.36 Aligned_cols=268 Identities=12% Similarity=0.051 Sum_probs=195.9
Q ss_pred ceEEEEECCCCCEEEEEeC-CCeEEEEEcCCCceEEEeccCC-cCeeEEEEcCCCCEEEEEeC---CCcEEEEECCC---
Q psy2110 196 LAVTCAFNKRGTLLAVGCN-DGRIVLWDFLTRGIAKIISAHM-HPVCSISWSRNGYKIISAST---DNNVCIWDVLT--- 267 (622)
Q Consensus 196 ~v~~~~~s~~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~--- 267 (622)
.|.+++|+|||+.||+++. +|+++||++.+++. ..+..|. ..+..++|+|| +.+++++. +...++|.+..
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence 5899999999999999887 99999999966654 4455555 68999999999 77777765 44455654432
Q ss_pred CcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC----Ce
Q psy2110 268 GECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK----GK 343 (622)
Q Consensus 268 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~ 343 (622)
+... .+.....+...+|+|+++.+++++..++.+.+||+.++........+. ..++|+|||++|++++.+ +.
T Consensus 101 g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~ 176 (582)
T 3o4h_A 101 GEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS 176 (582)
T ss_dssp TCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE
T ss_pred Cccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE
Confidence 3322 444444566789999998877777777777799998876544333322 688999999999987776 78
Q ss_pred EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEecccccccCCCCCCCcceeeeccccc------
Q psy2110 344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR--LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK------ 415 (622)
Q Consensus 344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~------ 415 (622)
|++||+.+++.. .+..|...+..++|+|||++|+++..++ .|++||+... ... .+..+...
T Consensus 177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---------~~~-~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---------SVE-DLELPSKDFSSYRP 245 (582)
T ss_dssp EEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---------CEE-ECCCSCSHHHHHCC
T ss_pred EEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---------cEE-EccCCCcChhhhhh
Confidence 999999988765 6678888899999999999999888888 8999998731 111 22211110
Q ss_pred eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CC---cEEEeecC
Q psy2110 416 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SG---VVSLWAQN 488 (622)
Q Consensus 416 ~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg---~v~iw~~~ 488 (622)
......+|||||.++++++. ++.+++|++ |+.+. .+.+. +.+++|+ +++++++++ +. .+++|+..
T Consensus 246 ~~~~~~~~spdg~~~~~~~~-~g~~~l~~~--g~~~~---~~~~~-v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARR-EGRSAVFID--GERVE---APQGN-HGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEE-TTEEEEEET--TEEEC---CCSSE-EEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred ccccceeEcCCCcEEEEEEc-CCcEEEEEE--CCeec---cCCCc-eEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 01122349999977777776 899999999 76554 23333 8999999 999888877 53 46666654
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=2.5e-21 Score=190.94 Aligned_cols=236 Identities=10% Similarity=0.133 Sum_probs=170.4
Q ss_pred eEEEEcCCCCEEEEeeC---CCcEEEEecCCcccc--cccccccCCCcccccccccceEEEEECCCCCEEEEEe-CCCeE
Q psy2110 145 VTCAFNKRGTLLAVGCN---DGRIVLWDFLTRGIA--KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-NDGRI 218 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~---dg~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i 218 (622)
..++|+|||+ |++++. ++.|++|++.++... ..+..+. ..+..++|+|+|++|++++ .++.|
T Consensus 43 ~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~-----------~~p~~~a~spdg~~l~~~~~~~~~v 110 (347)
T 3hfq_A 43 TYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG-----------TPPAYVAVDEARQLVYSANYHKGTA 110 (347)
T ss_dssp CCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES-----------CCCSEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC-----------CCCEEEEECCCCCEEEEEeCCCCEE
Confidence 4899999999 555544 689999999766432 2211111 2356889999999888887 67999
Q ss_pred EEEEcCC-Cc--eEEEecc---------CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEE--Ee--CCCCeE
Q psy2110 219 VLWDFLT-RG--IAKIISA---------HMHPVCSISWSRNGYKIISASTDNNVCIWDVL-TGECEQK--YR--FPSPIL 281 (622)
Q Consensus 219 ~iwd~~~-~~--~~~~~~~---------~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~--~~--~~~~v~ 281 (622)
.+|++.. +. .+..+.. +...+.+++|+|+|+.+++...++.|++|++. +++.... +. ....+.
T Consensus 111 ~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 111 EVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 9999963 22 2233321 12248889999999966666668899999998 5554332 22 334678
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEEEecC--Cce--eecccCCC------CceEEEEEeeCCCEEEE-EecCCeEEEEeCC
Q psy2110 282 KVQFHPRNDHMFLVCPMRHAAVLVDTDG--DHQ--IVPIDEDS------DLSIVASFDRRGQHVVT-GNSKGKVLVLSCP 350 (622)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~--~~~~~~~~------~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~ 350 (622)
.++|+|+++.+++++..++.+.+|++.. +.. ...+.... ..+..++|+|+|++|++ ...++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999998888888899999999874 321 11222111 45778999999998754 5568999999987
Q ss_pred ---CccEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecc
Q psy2110 351 ---ALELKASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQ 392 (622)
Q Consensus 351 ---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~ 392 (622)
..+.+..+..+...+..++|+|+|++|++++. ++.|.+|+++
T Consensus 271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 33556666666667889999999999988876 4889999765
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=2.6e-22 Score=218.38 Aligned_cols=330 Identities=8% Similarity=0.021 Sum_probs=217.7
Q ss_pred eEEEEccCCcEEEeccCCCeEEEEecccccee------------------cccCceEEeecC---------CceEEEeec
Q psy2110 5 IVASFDRRGQHVVTGNSKGKVLVLSCPALELK------------------ASRGNCLLVNTG---------DRLIRVYNH 57 (622)
Q Consensus 5 ~~~~fspdg~~latg~~dg~v~vwd~~~~~~~------------------~~~~~~l~~~~~---------d~~i~~w~~ 57 (622)
..++|+|||++++++ .||+|++||+.+++.. +++|++|++++. ++.+++||+
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 367999999887775 5899999998775322 457888988876 789999998
Q ss_pred hhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEE-eccCcceeEEEEeecC
Q psy2110 58 QEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL-HGTKGELLLDVVEFDG 136 (622)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~ 136 (622)
.+..... ...+ ...+.+++|||||++||++. ++.|++|++.+++..... .++...+. .|
T Consensus 98 ~~g~~~~-------~~~l-----~~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l~~~~~~~~v~------~g 157 (719)
T 1z68_A 98 SNGEFVR-------GNEL-----PRPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQITFNGRENKIF------NG 157 (719)
T ss_dssp TTTEECC-------SSCC-----CSSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCCCCBTTTEE------ES
T ss_pred CCCcccc-------ceec-----CcccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEEecCCCcCCeE------cc
Confidence 7532200 0111 12356799999999999987 379999999988776533 23332221 01
Q ss_pred cccc------ccceeEEEEcCCCCEEEEeeCCC----------------------------------cEEEEecCCcccc
Q psy2110 137 ALDC------ISLAVTCAFNKRGTLLAVGCNDG----------------------------------RIVLWDFLTRGIA 176 (622)
Q Consensus 137 ~~~~------~~~v~~~~~s~d~~~l~s~~~dg----------------------------------~i~vw~~~~~~~~ 176 (622)
.... .....+++|||||++||+++.|. .|++||+.+++..
T Consensus 158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~ 237 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV 237 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence 1000 01114899999999999987652 7889999887643
Q ss_pred cccccccCCCcccccccccceEEEEECCCCCEEEEEeCC----CeEEEEE----cCCCceEEEe----ccCCcCee----
Q psy2110 177 KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND----GRIVLWD----FLTRGIAKII----SAHMHPVC---- 240 (622)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~v~---- 240 (622)
..+........ ......+..++|+||++++++.... ..|.+|| +.++++...+ ..|...+.
T Consensus 238 ~~~~~~~~~~~---~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 314 (719)
T 1z68_A 238 GPQEVPVPAMI---ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFV 314 (719)
T ss_dssp CCEECCCCHHH---HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSC
T ss_pred ceeEccCCccC---CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccC
Confidence 10110000000 0011357899999998877764432 2488899 7777765555 46777776
Q ss_pred -EEEEcCCCCEEEE--EeCCC--cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeC----CCcEEEEEecC--
Q psy2110 241 -SISWSRNGYKIIS--ASTDN--NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPM----RHAAVLVDTDG-- 309 (622)
Q Consensus 241 -~~~~s~~~~~l~s--~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~i~~~d~~~-- 309 (622)
.+.|+|||+.|+. ...++ .|.+||+.+++..........+..+.++ +++.+++++.. .+...+|.+..
T Consensus 315 ~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~ 393 (719)
T 1z68_A 315 STPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS 393 (719)
T ss_dssp CCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred CccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence 8999999996654 43455 5778888877744333355567788878 88877777765 57788888764
Q ss_pred Cc-eeeccc----CCCCceEEEEEeeCCCEEEEE-ecC--CeEEEEeCCCccEEEEEe
Q psy2110 310 DH-QIVPID----EDSDLSIVASFDRRGQHVVTG-NSK--GKVLVLSCPALELKASFK 359 (622)
Q Consensus 310 ~~-~~~~~~----~~~~~~~~~~~~~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~ 359 (622)
+. ....+. .+...+..+.|++++++++.. +.. ..+.+||+.+++.+..+.
T Consensus 394 g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 21 122222 245567789999999877753 322 478899998888665554
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1.9e-20 Score=185.76 Aligned_cols=273 Identities=9% Similarity=0.096 Sum_probs=186.1
Q ss_pred CCCCEEEEecCC---CCeEEEEEc--CCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC---
Q psy2110 91 GDGEYVCAGSAR---QHALYIWEK--SVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND--- 162 (622)
Q Consensus 91 p~~~~l~~~~~~---~~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d--- 162 (622)
+...++++|++. ++.|.+|.+ .+++.......+.... ..++|+|||++|++++.+
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p-----------------~~l~~spdg~~l~~~~~~~~~ 73 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANP-----------------SYLIPSADGKFVYSVNEFSKD 73 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCC-----------------CSEEECTTSSEEEEEECCSST
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCC-----------------ceEEECCCCCEEEEEEccCCC
Confidence 344556666442 367999876 4565443322233333 478999999999999876
Q ss_pred -CcEEEEecCC--cccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-CCCeEEEEEcCCCceEEEe------
Q psy2110 163 -GRIVLWDFLT--RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-NDGRIVLWDFLTRGIAKII------ 232 (622)
Q Consensus 163 -g~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iwd~~~~~~~~~~------ 232 (622)
+.|.+|++.. +............ .....+++ ++++|++++ .++.|.+|++.....+..+
T Consensus 74 ~~~v~~~~~~~~~g~~~~~~~~~~~~---------~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 142 (361)
T 3scy_A 74 QAAVSAFAFDKEKGTLHLLNTQKTMG---------ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF 142 (361)
T ss_dssp TCEEEEEEEETTTTEEEEEEEEECSS---------SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC
T ss_pred CCcEEEEEEeCCCCcEEEeeEeccCC---------CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc
Confidence 7999998876 3322111111110 13456677 788777766 5789999999754332211
Q ss_pred cc--------CCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCc-------E-------EEEEeCCCCeEEEEEeCCC
Q psy2110 233 SA--------HMHPVCSISWSRNGYKIISAST-DNNVCIWDVLTGE-------C-------EQKYRFPSPILKVQFHPRN 289 (622)
Q Consensus 233 ~~--------~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~-------~-------~~~~~~~~~v~~~~~~~~~ 289 (622)
.+ +...+.+++|+|+|++|++++. ++.|++|++.... . .........+..++|+|++
T Consensus 143 ~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg 222 (361)
T 3scy_A 143 KGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG 222 (361)
T ss_dssp CCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred cCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC
Confidence 11 1234578999999997776654 7899999887543 1 1222345678899999999
Q ss_pred CeEEEEeeCCCcEEEEEecCCce--ee---cccCCCCceEEEEEeeCCCEEEEEecC--CeEEEEeCC--Ccc--EEEEE
Q psy2110 290 DHMFLVCPMRHAAVLVDTDGDHQ--IV---PIDEDSDLSIVASFDRRGQHVVTGNSK--GKVLVLSCP--ALE--LKASF 358 (622)
Q Consensus 290 ~~~~~~~~~~~~i~~~d~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~--~~~--~~~~~ 358 (622)
+.+++++..++.+.+|++.++.. +. ....+......++|+|+|++|+++..+ +.|.+|++. +++ .+..+
T Consensus 223 ~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~ 302 (361)
T 3scy_A 223 KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ 302 (361)
T ss_dssp SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe
Confidence 98777777899999999986532 22 223334556789999999999776654 899999985 444 44445
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecc
Q psy2110 359 KASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQ 392 (622)
Q Consensus 359 ~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~ 392 (622)
.. ...+.+++|+|+|++|++++ .++.|.+|.++
T Consensus 303 ~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 303 LT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred cC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 44 45678999999999998887 57889998765
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=3.8e-21 Score=192.86 Aligned_cols=309 Identities=14% Similarity=0.087 Sum_probs=207.2
Q ss_pred EEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC-CC--cEEEEecCCcccccccccccC
Q psy2110 108 IWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN-DG--RIVLWDFLTRGIAKIISAHMH 184 (622)
Q Consensus 108 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~~~~~ 184 (622)
.++..++..+..+..|..... ...+...+|+|||++|+.++. ++ .|.+||+.+++.......+..
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~------------~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~ 81 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCH------------RNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD 81 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEE------------CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB
T ss_pred EecCCCCcceEEecCCccccc------------chhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC
Confidence 456778888888887775442 000112789999999998887 66 488889888876655443321
Q ss_pred CCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEE--EcCCCCEEEEEe-------
Q psy2110 185 PEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSIS--WSRNGYKIISAS------- 255 (622)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~s~~------- 255 (622)
.+..++|+|||+.|++++.++.|++||+.+++....+..+...+.... +++++++++...
T Consensus 82 -----------~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 150 (388)
T 3pe7_A 82 -----------NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWV 150 (388)
T ss_dssp -----------CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred -----------CccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccc
Confidence 122458999999999999999999999999987776666665554444 489999887432
Q ss_pred ---------------CCCcEEEEECCCCcEEEEEeCCCCeEEEEEeC-CCCeEEEEeeC-----CCcEEEEEecCCceee
Q psy2110 256 ---------------TDNNVCIWDVLTGECEQKYRFPSPILKVQFHP-RNDHMFLVCPM-----RHAAVLVDTDGDHQIV 314 (622)
Q Consensus 256 ---------------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~-----~~~i~~~d~~~~~~~~ 314 (622)
.+..|++||+.+++......+...+..+.|+| +++.++++... ...+.+++..+.....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~ 230 (388)
T 3pe7_A 151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK 230 (388)
T ss_dssp CCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE
T ss_pred cccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE
Confidence 34679999999998877777778899999999 99877666543 3367888876554333
Q ss_pred cccCCC-CceEEEEEeeCCCEEEEEec-CC----eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110 315 PIDEDS-DLSIVASFDRRGQHVVTGNS-KG----KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV 388 (622)
Q Consensus 315 ~~~~~~-~~~~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 388 (622)
...... ..+...+|+|+|+.|+..+. ++ .|++||+.+++........ . ... ..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~~-------------------~~ 289 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP-A-CSH-------------------LM 289 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC-C-EEE-------------------EE
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC-C-cee-------------------ee
Confidence 322222 34677899999997765433 22 3888888877642211100 0 000 01
Q ss_pred EecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEee--------CCCCeEEEEECCCCeeEEEEecCCCC
Q psy2110 389 YNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGS--------ARQHALYIWEKSVGNLVKILHGTKGE 460 (622)
Q Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~--------~~d~~i~iwd~~~~~~~~~~~~~~~~ 460 (622)
++.. ..+|+|||++|+... ..+..|++||+.+++. ..+..+...
T Consensus 290 ~~~~---------------------------~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~ 341 (388)
T 3pe7_A 290 SNYD---------------------------GSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTS 341 (388)
T ss_dssp ECTT---------------------------SSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCC
T ss_pred ecCC---------------------------CCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCc
Confidence 1111 015788888777542 2256899999998875 445544430
Q ss_pred ----------ceeEEEECCCCCEEEEEe--CCcEEEeecC
Q psy2110 461 ----------LLLDVVWHPVRPIIASIS--SGVVSLWAQN 488 (622)
Q Consensus 461 ----------~v~~v~~sp~~~~l~s~~--dg~v~iw~~~ 488 (622)
.+.+++|+|+|+.|+.++ +|...||.++
T Consensus 342 ~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 342 WKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 278899999999888776 6777777653
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1.9e-21 Score=191.98 Aligned_cols=283 Identities=10% Similarity=0.031 Sum_probs=198.2
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEE-EeCCCeEEEEEcC
Q psy2110 146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAV-GCNDGRIVLWDFL 224 (622)
Q Consensus 146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~dg~i~iwd~~ 224 (622)
.+++++++.++++++.++.|++||+.+++....+..+.. ..+..++|+|+|+++++ +..++.|.+||+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----------~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~ 73 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK----------FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 73 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC----------CSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC----------CCCceeEECCCCCEEEEEeCCCCcEEEEeCC
Confidence 567889999999999999999999999877766654320 02467899999986654 4568999999999
Q ss_pred CCceEEEeccCC------cCeeEEEEcCCCCEEEEEeCC------------CcEEEEECCCCc---EEEEEeCCCCeEEE
Q psy2110 225 TRGIAKIISAHM------HPVCSISWSRNGYKIISASTD------------NNVCIWDVLTGE---CEQKYRFPSPILKV 283 (622)
Q Consensus 225 ~~~~~~~~~~~~------~~v~~~~~s~~~~~l~s~~~d------------~~i~iwd~~~~~---~~~~~~~~~~v~~~ 283 (622)
+++....+..+. ..+.+++|+|+|++|++++.+ +.|.+||+.+++ .+..+.++..+.++
T Consensus 74 t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 153 (349)
T 1jmx_B 74 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 153 (349)
T ss_dssp TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE
T ss_pred CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccce
Confidence 998877766332 337899999999999998865 899999998844 34455566678899
Q ss_pred EEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCC------------------------ceEEEEEeeCCCEEEEEe
Q psy2110 284 QFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSD------------------------LSIVASFDRRGQHVVTGN 339 (622)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~l~~~~ 339 (622)
+|+|+++ +++. ++.+.+||..+.+....+..... ....+++++++.......
T Consensus 154 ~~s~dg~-l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 229 (349)
T 1jmx_B 154 RAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 229 (349)
T ss_dssp EECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred eECCCCc-EEEc---cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence 9999998 5553 33499999988766554433210 223345554432111100
Q ss_pred -cCCeEEEEeCCCccE-EEEEecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccce
Q psy2110 340 -SKGKVLVLSCPALEL-KASFKASTTAIKSIEFAR-RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT 416 (622)
Q Consensus 340 -~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (622)
....+..++..+++. ...+..+...+.+++|+| ++++++++ ++.|++||+.. .+.+..+.. ..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~---------~~~~~~~~~---~~ 295 (349)
T 1jmx_B 230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ---------RKLIKAANL---DH 295 (349)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT---------TEEEEEEEC---SS
T ss_pred ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc---------CeEEEEEcC---CC
Confidence 011122355555442 122334566788999999 99998888 88999999973 233333321 12
Q ss_pred eeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC
Q psy2110 417 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT 457 (622)
Q Consensus 417 ~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~ 457 (622)
....++|+|+|++|++++. ++.|++||+.+++.+..+..+
T Consensus 296 ~~~~~~~s~dg~~l~~~~~-~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 296 TYYCVAFDKKGDKLYLGGT-FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CCCEEEECSSSSCEEEESB-SSEEEEEETTTTEEEEEEECS
T ss_pred CccceEECCCCCEEEEecC-CCeEEEEeccccceeeeeecC
Confidence 3457899999999988765 799999999999998888765
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.90 E-value=6.7e-21 Score=207.16 Aligned_cols=333 Identities=11% Similarity=0.078 Sum_probs=220.5
Q ss_pred eEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC--
Q psy2110 85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND-- 162 (622)
Q Consensus 85 ~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-- 162 (622)
.+++|+|||++|+++ + +.|++||+.+++....+.+|..... ......++|||||++|+.++.+
T Consensus 20 ~~~~w~~dg~~~~~~--~-~~i~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--E-NNILVFNAEYGNSSVFLENSTFDEF------------GHSINDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CCEEECSSSEEEEEE--T-TEEEEEETTTCCEEEEECTTTTTTC------------CSCCCEEEECTTSSEEEEEEEEEE
T ss_pred cccEECCCCcEEEEc--C-CcEEEEECCCCceEEEEechhhhhh------------cccccceEECCCCCEEEEEECCee
Confidence 468999999999886 4 8999999999999888888875431 0001247899999999998876
Q ss_pred -------CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe-cc
Q psy2110 163 -------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII-SA 234 (622)
Q Consensus 163 -------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~-~~ 234 (622)
+.+.+||+.+++... +..+. ..+..++|||||+.||.+. ++.|++|++.+++..+.. .+
T Consensus 85 ~~r~~~~~~~~~~d~~~~~~~~-l~~~~-----------~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g 151 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQLIT-EERIP-----------NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTG 151 (740)
T ss_dssp CSSSCEEEEEEEEETTTTEECC-SSCCC-----------TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCC
T ss_pred eEEEccceEEEEEECCCCcEEE-cccCC-----------CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCC
Confidence 566799999987543 32221 2478999999999999885 689999999887754422 23
Q ss_pred CCcCe-----------------eEEEEcCCCCEEEEEeCCC------------------------------------cEE
Q psy2110 235 HMHPV-----------------CSISWSRNGYKIISASTDN------------------------------------NVC 261 (622)
Q Consensus 235 ~~~~v-----------------~~~~~s~~~~~l~s~~~d~------------------------------------~i~ 261 (622)
+...+ ..+.|||||++|+.++.|. .|+
T Consensus 152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~ 231 (740)
T 4a5s_A 152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF 231 (740)
T ss_dssp BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence 32222 3589999999999875321 488
Q ss_pred EEECCC---C---cEEEEEe------CCCCeEEEEEeCCCCeEEEEeeC---CCcEEEEEecCCc----eee--cc--cC
Q psy2110 262 IWDVLT---G---ECEQKYR------FPSPILKVQFHPRNDHMFLVCPM---RHAAVLVDTDGDH----QIV--PI--DE 318 (622)
Q Consensus 262 iwd~~~---~---~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~----~~~--~~--~~ 318 (622)
+||+.+ + +...... +...+..++|+|+++.+++.... +..|++||+.++. +.. .+ ..
T Consensus 232 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~ 311 (740)
T 4a5s_A 232 VVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS 311 (740)
T ss_dssp EEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC
T ss_pred EEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc
Confidence 899988 7 4433322 44568899999999855444332 2368999998875 221 11 23
Q ss_pred CCCceE-----EEEEeeCCCEEE-EEec-C--CeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-----C
Q psy2110 319 DSDLSI-----VASFDRRGQHVV-TGNS-K--GKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD-----R 384 (622)
Q Consensus 319 ~~~~~~-----~~~~~~~~~~l~-~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~ 384 (622)
+...+. ...|+|||+.++ ..+. + ..|++|++.+++... +......+..+.. ++++.|+..+.. +
T Consensus 312 ~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~ 389 (740)
T 4a5s_A 312 TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPG 389 (740)
T ss_dssp SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTT
T ss_pred CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCc
Confidence 443332 678999999877 5543 3 468889988766554 4444455665542 446666665443 3
Q ss_pred cEEEE--ecccccccCCCCCCCcceeeecc--ccceeeeeEEEcCCCCeEEEeeCC--CCeEEEEECCCCeeEEEEec
Q psy2110 385 LIRVY--NHQEVLNAGKDGDPEPIQKLQDL--VNKTMWKKCCFSGDGEYVCAGSAR--QHALYIWEKSVGNLVKILHG 456 (622)
Q Consensus 385 ~i~i~--d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~--d~~i~iwd~~~~~~~~~~~~ 456 (622)
...|| ++... .....+... ........+.|||+|++++..... -..+++++..+++.+..+..
T Consensus 390 ~~~ly~v~~~g~---------~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~~ 458 (740)
T 4a5s_A 390 GRNLYKIQLIDY---------TKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (740)
T ss_dssp CBEEEEEETTEE---------EEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred eeEEEEEECCCC---------CcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEecc
Confidence 34444 44321 111112111 012345678999999988766542 24688999888876666543
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=1.8e-21 Score=195.20 Aligned_cols=276 Identities=11% Similarity=0.042 Sum_probs=196.5
Q ss_pred EEEcCCCCEEEEecCCCC--eEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCc
Q psy2110 87 CCFSGDGEYVCAGSARQH--ALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 164 (622)
Q Consensus 87 ~~~sp~~~~l~~~~~~~~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~ 164 (622)
.+|||||++|++++..++ .|.+||+.+++......++...+ ..++|+|||+.|+.++.++.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~-----------------~~~~~spdg~~l~~~~~~~~ 103 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNT-----------------FGGFLSPDDDALFYVKDGRN 103 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCS-----------------SSCEECTTSSEEEEEETTTE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCc-----------------cceEEcCCCCEEEEEeCCCe
Confidence 689999999999887446 58889999998877776666554 26789999999999999999
Q ss_pred EEEEecCCcccccccccccCCCcccccccccceE--EEEECCCCCEEEEEe----------------------CCCeEEE
Q psy2110 165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAV--TCAFNKRGTLLAVGC----------------------NDGRIVL 220 (622)
Q Consensus 165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~g~~l~~~~----------------------~dg~i~i 220 (622)
|++||+.+++.......+.. .+. ...+++++++++... .+..|++
T Consensus 104 l~~~d~~~g~~~~~~~~~~~-----------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 104 LMRVDLATLEENVVYQVPAE-----------WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp EEEEETTTCCEEEEEECCTT-----------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred EEEEECCCCcceeeeechhh-----------cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 99999999876554443321 122 234589999887432 3467999
Q ss_pred EEcCCCceEEEeccCCcCeeEEEEcC-CCCEEEEEeCC------CcEEEEECCCCcEEEEEeCC--CCeEEEEEeCCCCe
Q psy2110 221 WDFLTRGIAKIISAHMHPVCSISWSR-NGYKIISASTD------NNVCIWDVLTGECEQKYRFP--SPILKVQFHPRNDH 291 (622)
Q Consensus 221 wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~ 291 (622)
||+.+++.. .+..+...+..++|+| ||++|+.+..+ ..|.++|+.+++........ ..+..+.|+|+|+.
T Consensus 173 ~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (388)
T 3pe7_A 173 VDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSA 251 (388)
T ss_dssp EETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSC
T ss_pred EECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCE
Confidence 999988654 4445667789999999 99999887763 37888898776655444443 24778899999998
Q ss_pred EEEEeeCCC----cEEEEEecCCcee--ecccCCCCc---eEEEEEeeCCCEEEEE---------ecCCeEEEEeCCCcc
Q psy2110 292 MFLVCPMRH----AAVLVDTDGDHQI--VPIDEDSDL---SIVASFDRRGQHVVTG---------NSKGKVLVLSCPALE 353 (622)
Q Consensus 292 ~~~~~~~~~----~i~~~d~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~l~~~---------~~dg~i~i~d~~~~~ 353 (622)
+++++..++ .+++||+.++... ..+..+... .....|+|+|+.|+.. ..+..|++||+.+++
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 866655433 3999999876532 222220000 1113689999988754 456689999998876
Q ss_pred EEEEEecCCC-----------CEEEEEEcCCCCEEEEEeC-CCcEEEEecc
Q psy2110 354 LKASFKASTT-----------AIKSIEFARRGNCLLVNTG-DRLIRVYNHQ 392 (622)
Q Consensus 354 ~~~~~~~~~~-----------~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~ 392 (622)
. ..+..+.. .+.+++|+|||++|++.+. ++...||.++
T Consensus 332 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 332 Q-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp E-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred e-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 5 44555554 5788999999999888764 6666666554
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.88 E-value=1.2e-20 Score=205.12 Aligned_cols=321 Identities=10% Similarity=0.037 Sum_probs=214.2
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC---------
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND--------- 215 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--------- 215 (622)
.+++|+|||++|+++ |++|++|++.+++....+..+...... .....++|||||++|++++.+
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFG------HSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCC------SCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhc------ccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 488999999999886 899999999999877666655432111 112357999999999998865
Q ss_pred CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCe-------------
Q psy2110 216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP--SPI------------- 280 (622)
Q Consensus 216 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~v------------- 280 (622)
+.+.+||+.+++.. .+..|...+..++|||||+.|+.+. ++.|++|++.+++..+..... ..+
T Consensus 92 ~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 92 ASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred eEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 66779999988754 4677788899999999999999985 689999999988865543211 112
Q ss_pred ----EEEEEeCCCCeEEEEeeCCC-----------------------------------cEEEEEecC---Cc--eeecc
Q psy2110 281 ----LKVQFHPRNDHMFLVCPMRH-----------------------------------AAVLVDTDG---DH--QIVPI 316 (622)
Q Consensus 281 ----~~~~~~~~~~~~~~~~~~~~-----------------------------------~i~~~d~~~---~~--~~~~~ 316 (622)
..+.|||||+.+++....+. .+++||+.+ +. ....+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 35899999998777643322 477788877 52 22222
Q ss_pred c------CCCCceEEEEEeeCCCEEEEEec----CCeEEEEeCCCcc----EE--EEE--ecCCCCEE-----EEEEcCC
Q psy2110 317 D------EDSDLSIVASFDRRGQHVVTGNS----KGKVLVLSCPALE----LK--ASF--KASTTAIK-----SIEFARR 373 (622)
Q Consensus 317 ~------~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~--~~~--~~~~~~i~-----~~~~s~~ 373 (622)
. .+...+..++|+|||+.++.... +..|.+||+.+++ +. ..+ ..+...|. .++|+||
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 2 26677889999999997665433 2379999998876 22 112 34555444 7889999
Q ss_pred CCEEE-EEeC-CC--cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCC------CCeEEEE
Q psy2110 374 GNCLL-VNTG-DR--LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR------QHALYIW 443 (622)
Q Consensus 374 ~~~l~-~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~------d~~i~iw 443 (622)
|+.|+ ..+. +| .|++|++.. .....+... ...+..+ +++|++.|+..+.. ...|+..
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~~~----------~~~~~lT~g--~~~v~~~-~~~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQIDK----------KDCTFITKG--TWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEETTC----------SSCEESCCS--SSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred CCEEEEEEEcCCCceEEEEEECCC----------CceEecccC--CEEEEEE-EEEeCCEEEEEEecCCCCCceeEEEEE
Confidence 99887 6654 44 577888762 111222211 1112222 22457777665542 2356666
Q ss_pred ECCCCeeEEEEecC---CCCceeEEEECCCCCEEEEEe-C---CcEEEeecC
Q psy2110 444 EKSVGNLVKILHGT---KGELLLDVVWHPVRPIIASIS-S---GVVSLWAQN 488 (622)
Q Consensus 444 d~~~~~~~~~~~~~---~~~~v~~v~~sp~~~~l~s~~-d---g~v~iw~~~ 488 (622)
++..+.....+... .......+.|+|++++++... . ..+.+++..
T Consensus 397 ~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 397 QLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp ETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred ECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 77655544345422 112388999999999776554 2 356666654
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=1.8e-20 Score=189.35 Aligned_cols=199 Identities=14% Similarity=0.132 Sum_probs=143.8
Q ss_pred cccceeEEEEcCCCCEEE----EecCCCCeEEEEEcCCC--------c---eEEEEeccCcceeEEEEeecCccccccce
Q psy2110 80 NKTMWKKCCFSGDGEYVC----AGSARQHALYIWEKSVG--------N---LVKILHGTKGELLLDVVEFDGALDCISLA 144 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~----~~~~~~~~i~vwd~~~~--------~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~v 144 (622)
....+.+++|+|+|++|+ +++. |+.|+|||+.++ + .+..+.+|...|
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V----------------- 152 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEY-GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMV----------------- 152 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTT-EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSE-----------------
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCC-CceEEEEEccccccCCcCCcceeeeeeccCCCCCce-----------------
Confidence 345678999999999999 5665 599999998765 2 145566787777
Q ss_pred eEEEEcCC-CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110 145 VTCAFNKR-GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF 223 (622)
Q Consensus 145 ~~~~~s~d-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~ 223 (622)
++++|+|+ +.+|++++.||+|++||+.++........|. ..|.+++|+|+|++|++|+.||.|++||+
T Consensus 153 ~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~-----------~~v~~v~wspdg~~lasgs~dg~v~iwd~ 221 (434)
T 2oit_A 153 IDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST-----------VAVTSVCWSPKGKQLAVGKQNGTVVQYLP 221 (434)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG-----------GCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred EEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC-----------CceeEEEEcCCCCEEEEEcCCCcEEEEcc
Confidence 59999998 7899999999999999999875443333322 35899999999999999999999999999
Q ss_pred CCCceEEEeccC-------CcCeeEEEEcCCCCEEEEE-eCCC------cEEEEECCCCc-----EEEEEe-C-------
Q psy2110 224 LTRGIAKIISAH-------MHPVCSISWSRNGYKIISA-STDN------NVCIWDVLTGE-----CEQKYR-F------- 276 (622)
Q Consensus 224 ~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~s~-~~d~------~i~iwd~~~~~-----~~~~~~-~------- 276 (622)
+ ++....+..| ...|.+++|++++.++++. ..+| .+++|++...+ ....+. .
T Consensus 222 ~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 300 (434)
T 2oit_A 222 T-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTE 300 (434)
T ss_dssp T-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSS
T ss_pred C-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCC
Confidence 7 5555555433 3389999999988776543 3343 38999998652 112211 1
Q ss_pred CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110 277 PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD 308 (622)
Q Consensus 277 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 308 (622)
..+...+.+.++.+.++++.+....+.++...
T Consensus 301 r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 301 RQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp SCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred cCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 12233344557777667776666666666653
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=1.3e-19 Score=179.72 Aligned_cols=275 Identities=12% Similarity=0.097 Sum_probs=187.2
Q ss_pred EEEEEeCC--CeEEEEEcC--CCceEE--Eec-cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEEeC--C
Q psy2110 208 LLAVGCND--GRIVLWDFL--TRGIAK--IIS-AHMHPVCSISWSRNGYKIISASTDNNVCIWDVL-TGECEQKYRF--P 277 (622)
Q Consensus 208 ~l~~~~~d--g~i~iwd~~--~~~~~~--~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~--~ 277 (622)
++++|+.. +.|.+|+++ +++... ... .+...+..++|+|+|++|++++.+ .|.+|++. +++......+ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35556543 568887763 454322 111 233468899999999999999887 99999997 7876554432 2
Q ss_pred CCeEEEEEeCCCCeE-EEEee-------------CCCcEEEEEecC-Cceeeccc----CCCCceEEEEEeeCCCEEEEE
Q psy2110 278 SPILKVQFHPRNDHM-FLVCP-------------MRHAAVLVDTDG-DHQIVPID----EDSDLSIVASFDRRGQHVVTG 338 (622)
Q Consensus 278 ~~v~~~~~~~~~~~~-~~~~~-------------~~~~i~~~d~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~ 338 (622)
+.+..++|+|+++.+ ++++. .++.+.+|++.. +.....+. .+...+..++|+|+|++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 345668999999863 34443 688999999974 33322222 245678899999999988876
Q ss_pred ec-CCeEEEEeCC-CccEE--EEEe--cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCCCCCCc-ceeee
Q psy2110 339 NS-KGKVLVLSCP-ALELK--ASFK--ASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDGDPEP-IQKLQ 410 (622)
Q Consensus 339 ~~-dg~i~i~d~~-~~~~~--~~~~--~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~-~~~~~ 410 (622)
.. ++.|++|++. +++.. ..+. .+...+..++|+|+|++|++++. ++.|.+|+++.. .+.... ...+.
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~~~~~~~~~~ 237 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-----THMPVYTHHSFP 237 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----TCCEEEEEEEEE
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-----CCcEEEccceEE
Confidence 54 6799999998 67653 3343 23567899999999999988775 688999987520 011000 11111
Q ss_pred ccc----cce-------eeeeEE-EcCCCCeEEEeeCCCC-----eEEEEECC-CCeeEEE---EecCCCCceeEEEECC
Q psy2110 411 DLV----NKT-------MWKKCC-FSGDGEYVCAGSARQH-----ALYIWEKS-VGNLVKI---LHGTKGELLLDVVWHP 469 (622)
Q Consensus 411 ~~~----~~~-------~~~~~~-~spdg~~l~~~~~~d~-----~i~iwd~~-~~~~~~~---~~~~~~~~v~~v~~sp 469 (622)
... .+. ....++ |+|||++|+++..... .|.+|++. +|++... +..+... +..++|+|
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~-~~~~a~sp 316 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-GHSNAVSP 316 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-TTCCCEEE
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC-cccceecC
Confidence 111 111 356789 9999999987764333 89999986 6765442 3333333 77899999
Q ss_pred ---CCCEEEEEe--CCcEEEeecCC
Q psy2110 470 ---VRPIIASIS--SGVVSLWAQNQ 489 (622)
Q Consensus 470 ---~~~~l~s~~--dg~v~iw~~~~ 489 (622)
++++|++++ ++.|++|+++.
T Consensus 317 ~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 317 CPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp CTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCcCCCEEEEEEcCCCeEEEEEEch
Confidence 899999887 48999999853
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.87 E-value=2.1e-19 Score=177.07 Aligned_cols=291 Identities=12% Similarity=0.133 Sum_probs=208.4
Q ss_pred CCCCEEEEee------CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC----------
Q psy2110 151 KRGTLLAVGC------NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN---------- 214 (622)
Q Consensus 151 ~d~~~l~s~~------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---------- 214 (622)
++++++++.. .|+.|.+||..+++.+..+.... .. .++|+|||++++++..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~------------~p-~i~~spdg~~lyv~~~~~~~~~~g~~ 79 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAF------------NG-HVQVSNDGKKIYTMTTYHERITRGKR 79 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCE------------EE-EEEECTTSSEEEEEEEEETTSSSSCE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCC------------CC-ceEECCCCCEEEEEEecccccccCCC
Confidence 3566666553 36799999999887766554331 23 7899999999998863
Q ss_pred CCeEEEEEcCCCceEEEeccC------CcCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEE-EeCCCCeEEEEE
Q psy2110 215 DGRIVLWDFLTRGIAKIISAH------MHPVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQK-YRFPSPILKVQF 285 (622)
Q Consensus 215 dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~ 285 (622)
++.|.+||..+++.+..+... ......++++|||++|+++.. +++|.+||+.+++.+.. +.... ...+.+
T Consensus 80 ~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~ 158 (361)
T 2oiz_A 80 SDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIP 158 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEE
T ss_pred CCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEE
Confidence 567999999998888777632 245678999999999998874 57899999999998887 66443 233667
Q ss_pred eCCCCeEEEEeeCCCcEEEEEecCC-cee------ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc--EEE
Q psy2110 286 HPRNDHMFLVCPMRHAAVLVDTDGD-HQI------VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE--LKA 356 (622)
Q Consensus 286 ~~~~~~~~~~~~~~~~i~~~d~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~ 356 (622)
.|++...+++.+.++.+.+++.... ... ..+......+ .+.+++++..++..+.++.+.++|+.... ...
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG 237 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence 8887667788888999999988653 222 1122222222 23446778788878888999999987554 222
Q ss_pred EEecC----------CCCEEEEEEcCCCCEEEEEeC-----------CCcEEEEecccccccCCCCCCCcceeeeccccc
Q psy2110 357 SFKAS----------TTAIKSIEFARRGNCLLVNTG-----------DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK 415 (622)
Q Consensus 357 ~~~~~----------~~~i~~~~~s~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (622)
.+... ......++|+|+++.++++.. .+.|.+||+. ..+.+..+....
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~---------t~~~v~~i~~~~-- 306 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK---------TKQRVARIPGRD-- 306 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT---------TTEEEEEEECTT--
T ss_pred cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC---------CCcEEEEEecCC--
Confidence 22210 011123789999888877643 3479999988 334555554332
Q ss_pred eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC--eeEEEEecCCCCceeEEEECCCCC
Q psy2110 416 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG--NLVKILHGTKGELLLDVVWHPVRP 472 (622)
Q Consensus 416 ~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~v~~sp~~~ 472 (622)
...++|+|||++|++++. +.|.+||..++ +.++.+...... ...++++|+|.
T Consensus 307 --p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~-P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 --ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEA-SLQVQFHPVGG 360 (361)
T ss_dssp --CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSS-EEEEEECCCSC
T ss_pred --eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCC-cEEEEecCCCC
Confidence 577899999999988773 89999999999 988887555444 88999999985
No 166
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=1.1e-19 Score=183.48 Aligned_cols=294 Identities=12% Similarity=0.071 Sum_probs=188.1
Q ss_pred eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE----Ee
Q psy2110 84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA----VG 159 (622)
Q Consensus 84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~----s~ 159 (622)
...+++++++.++++++.+ + +++|+............+...+. .......+.....|++++|+|++++|+ +|
T Consensus 39 ~n~lavs~~~~~l~~~~~d-g-v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGAS-G-LQIFPTKNLLIQNKPGDDPNKIV--DKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CBCEEEETTTTEEEEEETT-E-EEEEEHHHHCCCCCTTCCTTCEE--ECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred ccEEEEecCCCEEEEECCC-E-EEEEEchHhhhhcccccCccccc--ccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 4578999999999998864 4 88987642111000000000000 000000011122357999999999999 78
Q ss_pred eCCCcEEEEecCCc-----cc------ccccccccCCCcccccccccceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCc
Q psy2110 160 CNDGRIVLWDFLTR-----GI------AKIISAHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDFLTRG 227 (622)
Q Consensus 160 ~~dg~i~vw~~~~~-----~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iwd~~~~~ 227 (622)
+.|+.|+|||+.++ +. ...+..|. ..|.+++|+|+ +++|++++.||.|++||+.++.
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-----------~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~ 183 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG-----------GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG-----------GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCC-----------CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence 89999999998765 11 11222222 46899999998 8899999999999999999987
Q ss_pred eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-C-------CCCeEEEEEeCCCCeEEEEeeCC
Q psy2110 228 IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-F-------PSPILKVQFHPRNDHMFLVCPMR 299 (622)
Q Consensus 228 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~-------~~~v~~~~~~~~~~~~~~~~~~~ 299 (622)
......+|...|++++|+|+|++|++|+.||.|++||++ ++....+. + ...+.+++|++++..+++....+
T Consensus 184 ~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 184 KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 777777889999999999999999999999999999998 66555554 1 12789999999876555555555
Q ss_pred C------cEEEEEecCCc-----eeeccc-------CCCCceEEEEEeeCCCEEEEEec-CCeEEEEeCCCc--cE-EEE
Q psy2110 300 H------AAVLVDTDGDH-----QIVPID-------EDSDLSIVASFDRRGQHVVTGNS-KGKVLVLSCPAL--EL-KAS 357 (622)
Q Consensus 300 ~------~i~~~d~~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~-~~~ 357 (622)
+ .+++|+++... ....+. ........+.+-++.+++++++. .+.|.++..... .. ...
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~ 342 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL 342 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence 3 38899997542 111111 12222233444467777766554 344555553221 11 111
Q ss_pred Ee------------cCCCCEEEEEEc---------------CCCCEEEEEeCCCcEEEEeccc
Q psy2110 358 FK------------ASTTAIKSIEFA---------------RRGNCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 358 ~~------------~~~~~i~~~~~s---------------~~~~~l~~~~~d~~i~i~d~~~ 393 (622)
+. .......++++. |-...|.+-+.+|.+..|.+-.
T Consensus 343 ~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 343 LEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp ECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 11 112223344442 1235678888999999998763
No 167
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.87 E-value=5.4e-18 Score=175.23 Aligned_cols=333 Identities=14% Similarity=0.095 Sum_probs=237.2
Q ss_pred CCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEec
Q psy2110 91 GDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF 170 (622)
Q Consensus 91 p~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 170 (622)
|.+.++++.. +++.|.++|..+++.+.++...... +.+.|+|||+++++++.|+.|.+||+
T Consensus 165 ~~~~~~V~~~-~~~~V~viD~~t~~v~~~i~~g~~p------------------~~v~~SpDGr~lyv~~~dg~V~viD~ 225 (567)
T 1qks_A 165 LENLFSVTLR-DAGQIALIDGSTYEIKTVLDTGYAV------------------HISRLSASGRYLFVIGRDGKVNMIDL 225 (567)
T ss_dssp GGGEEEEEET-TTTEEEEEETTTCCEEEEEECSSCE------------------EEEEECTTSCEEEEEETTSEEEEEET
T ss_pred CCceEEEEeC-CCCeEEEEECCCCeEEEEEeCCCCc------------------cceEECCCCCEEEEEcCCCeEEEEEC
Confidence 3333444444 5699999999999999888754432 48999999999999999999999999
Q ss_pred C--CcccccccccccCCCcccccccccceEEEEEC----CCCCEEEEEeC-CCeEEEEEcCCCceEEEeccC--------
Q psy2110 171 L--TRGIAKIISAHMHPEFDGALDCISLAVTCAFN----KRGTLLAVGCN-DGRIVLWDFLTRGIAKIISAH-------- 235 (622)
Q Consensus 171 ~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-------- 235 (622)
. +++.+..+.... ....++|+ |||++++++.. .+.+.++|..+.+.+..+...
T Consensus 226 ~~~t~~~v~~i~~G~------------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~ 293 (567)
T 1qks_A 226 WMKEPTTVAEIKIGS------------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 293 (567)
T ss_dssp TSSSCCEEEEEECCS------------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred CCCCCcEeEEEecCC------------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccc
Confidence 5 665555544322 34688999 69998887765 589999999999888776522
Q ss_pred ---CcCeeEEEEcCCCCEEEE-EeCCCcEEEEECCCCcEEE--EEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC
Q psy2110 236 ---MHPVCSISWSRNGYKIIS-ASTDNNVCIWDVLTGECEQ--KYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG 309 (622)
Q Consensus 236 ---~~~v~~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 309 (622)
...+..+..++++..++. ....|.|.++|..+.+... .+........+.|+|+++++++++..++.|.++|+.+
T Consensus 294 ~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 294 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred ccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 125778889988665544 4456899999998765433 3345556778999999999989888899999999998
Q ss_pred CceeecccC-----CCCceEEEEEeeCCCEE-EEEe-cCCeEEEEeCCC-------ccEEEEEecCCCCEEEEEEcCCCC
Q psy2110 310 DHQIVPIDE-----DSDLSIVASFDRRGQHV-VTGN-SKGKVLVLSCPA-------LELKASFKASTTAIKSIEFARRGN 375 (622)
Q Consensus 310 ~~~~~~~~~-----~~~~~~~~~~~~~~~~l-~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~ 375 (622)
.+.+..+.. |...-.. .++|++..+ +++. .++.|.++|..+ .+.+.++......-..+..+|+++
T Consensus 374 ~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~ 452 (567)
T 1qks_A 374 GKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQ 452 (567)
T ss_dssp TEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCS
T ss_pred CcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCC
Confidence 876544433 2211111 257875554 4443 468999999987 678888886544434577899999
Q ss_pred EEEEEeC-------CCcEEEEecccccccCCCCCCCcceeeec-----c-ccceeeeeEEEcCCCCeEEEeeC----CCC
Q psy2110 376 CLLVNTG-------DRLIRVYNHQEVLNAGKDGDPEPIQKLQD-----L-VNKTMWKKCCFSGDGEYVCAGSA----RQH 438 (622)
Q Consensus 376 ~l~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~spdg~~l~~~~~----~d~ 438 (622)
+|.+... ...|.++|+.+....+ ....+..+.. . .....+..+.|+|+|+++..+.. .++
T Consensus 453 ~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~ 529 (567)
T 1qks_A 453 YLYVDATLNPEAEISGSVAVFDIKAMTGDG---SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQES 529 (567)
T ss_dssp EEEEECTTCSSHHHHTCEEEEEGGGCCCSS---SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCC
T ss_pred eEEEecCCCCCcccCceEEEEECCcccccc---cCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCC
Confidence 9988763 3589999998531100 0111122211 1 12334567899999999887632 368
Q ss_pred eEEEEECCCCeeEEEEecCC
Q psy2110 439 ALYIWEKSVGNLVKILHGTK 458 (622)
Q Consensus 439 ~i~iwd~~~~~~~~~~~~~~ 458 (622)
.|.|+|.++++++..++...
T Consensus 530 ~i~v~D~~t~~~~~~i~~~~ 549 (567)
T 1qks_A 530 ALVVVDDKTLELKHVIKDER 549 (567)
T ss_dssp EEEEEETTTTEEEEEECCTT
T ss_pred cEEEEECCCceEEEEeCCCc
Confidence 99999999999998887643
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.87 E-value=2e-20 Score=188.17 Aligned_cols=308 Identities=13% Similarity=0.021 Sum_probs=201.9
Q ss_pred EEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCccccccccccc
Q psy2110 107 YIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND---GRIVLWDFLTRGIAKIISAHM 183 (622)
Q Consensus 107 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~ 183 (622)
..+|..+++.+..+..+..... ...+..++|+|||++|+..... ..|.+|++.+++.........
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~------------~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~ 80 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICH------------RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG 80 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEE------------CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC
T ss_pred eeecCCCCcceEEEecCCCCcc------------ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC
Confidence 3457778887777766543310 0112478999999998877543 468888988876543322211
Q ss_pred CCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeE-------------------EEE
Q psy2110 184 HPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCS-------------------ISW 244 (622)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------~~~ 244 (622)
. ....+.|+|||++|++++.++.|++|++.+++.......+...... +.|
T Consensus 81 ~-----------~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 149 (396)
T 3c5m_A 81 D-----------NTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDW 149 (396)
T ss_dssp B-----------CTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred C-----------ccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccccccccccc
Confidence 0 1123589999999999999999999999988766555544432222 346
Q ss_pred cCCCCEEEEE-----eCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeC-CCCeEEEEeeCC-----CcEEEEEecCCcee
Q psy2110 245 SRNGYKIISA-----STDNNVCIWDVLTGECEQKYRFPSPILKVQFHP-RNDHMFLVCPMR-----HAAVLVDTDGDHQI 313 (622)
Q Consensus 245 s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~-----~~i~~~d~~~~~~~ 313 (622)
+|+++.++.+ ..+..|++||+.+++..........+..+.|+| ++..++++.... ..+.++++.+....
T Consensus 150 spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (396)
T 3c5m_A 150 QPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR 229 (396)
T ss_dssp CCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE
T ss_pred CCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee
Confidence 7777766554 355689999999998877777778899999999 777666655322 36888888665433
Q ss_pred ecccCC-CCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCccEEEEEecCCCCEEEEEEcC-CCCEEEEEe-----
Q psy2110 314 VPIDED-SDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALELKASFKASTTAIKSIEFAR-RGNCLLVNT----- 381 (622)
Q Consensus 314 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----- 381 (622)
...... ...+..++|+|+|++|+.++.+ +.|++||+.+++........ ... +.|+| +|+++++++
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~ 306 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPV 306 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC--
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcce
Confidence 322221 2356778999999987776543 45999999888754433222 233 89999 999888765
Q ss_pred -----------CCCcEEEEecccccccCCCCCCCcceeeeccccce---------eeeeEEEcCCCCeEEEeeCCCC--e
Q psy2110 382 -----------GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT---------MWKKCCFSGDGEYVCAGSARQH--A 439 (622)
Q Consensus 382 -----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~spdg~~l~~~~~~d~--~ 439 (622)
.+..|++||+... . ...+....... ....++|+|||++|+..+..++ .
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~-------~---~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~ 376 (396)
T 3c5m_A 307 DVADADSYNIENDPFLYVLNTKAK-------S---AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPA 376 (396)
T ss_dssp --------CCCCCCEEEEEETTTT-------B---CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred eeccccccccCCCCcEEEEecccC-------c---eEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCce
Confidence 2467999998731 1 12222211100 1234689999999988776444 4
Q ss_pred EEEEECCCCee
Q psy2110 440 LYIWEKSVGNL 450 (622)
Q Consensus 440 i~iwd~~~~~~ 450 (622)
|+++++.+++.
T Consensus 377 l~~~~~~~~~~ 387 (396)
T 3c5m_A 377 IYIADVPESYK 387 (396)
T ss_dssp EEEEECCTTCC
T ss_pred EEEEEEccccc
Confidence 56666666554
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=1.9e-19 Score=178.46 Aligned_cols=237 Identities=10% Similarity=0.068 Sum_probs=170.9
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecC-CcccccccccccCCCcccccccccceEEEEECCCCCE--EEEEe--------
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFL-TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL--LAVGC-------- 213 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~~~-------- 213 (622)
..++|+|+|++|++++.+ .|.+|++. +++.......... + .+..++|+|+|++ ++++.
T Consensus 43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~----g------~~~~~~~spdg~~l~~~~~~~~~~~~~~ 111 (365)
T 1jof_A 43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG----G------HPRANDADTNTRAIFLLAAKQPPYAVYA 111 (365)
T ss_dssp SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC----S------SGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC----C------CCccEEECCCCCEEEEEEecCCcceecc
Confidence 489999999999999887 99999997 6654432221100 0 1234689999994 44543
Q ss_pred -----CCCeEEEEEcC-CCceEEEec----cCCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECC-CCcEE--EEEe---C
Q psy2110 214 -----NDGRIVLWDFL-TRGIAKIIS----AHMHPVCSISWSRNGYKIISAST-DNNVCIWDVL-TGECE--QKYR---F 276 (622)
Q Consensus 214 -----~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~-~~~~~--~~~~---~ 276 (622)
.++.+.+|++. +++....+. .+...+.+++|+|||++|+++.. ++.|++|++. +++.. ..+. +
T Consensus 112 ~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T 1jof_A 112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred ceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence 68999999997 465544443 24567899999999998887764 6799999998 77653 2333 2
Q ss_pred CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC--Cce------eecccCC----CC------ceEEEE-EeeCCCEEEE
Q psy2110 277 PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG--DHQ------IVPIDED----SD------LSIVAS-FDRRGQHVVT 337 (622)
Q Consensus 277 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~------~~~~~~~----~~------~~~~~~-~~~~~~~l~~ 337 (622)
...+..++|+|+++.++++...++.+.+|++.. +.. +..+... .. .+..++ |+|+|++|++
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 567899999999998777777788999998753 332 1122211 21 477899 9999999887
Q ss_pred EecCC------eEEEEeCC-CccEEE---EEecCCCCEEEEEEcC---CCCEEEEEeCC-CcEEEEecc
Q psy2110 338 GNSKG------KVLVLSCP-ALELKA---SFKASTTAIKSIEFAR---RGNCLLVNTGD-RLIRVYNHQ 392 (622)
Q Consensus 338 ~~~dg------~i~i~d~~-~~~~~~---~~~~~~~~i~~~~~s~---~~~~l~~~~~d-~~i~i~d~~ 392 (622)
++.+. .|.+|++. +++... ....+......++|+| +|++|++++.+ +.|.+|+++
T Consensus 272 ~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred ECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 76432 89999986 666543 2333455567899999 89999998864 899999987
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.86 E-value=3.1e-19 Score=175.92 Aligned_cols=262 Identities=15% Similarity=0.184 Sum_probs=191.2
Q ss_pred EEEEcCCCCEEEEecC---------CCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110 86 KCCFSGDGEYVCAGSA---------RQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL 156 (622)
Q Consensus 86 ~~~~sp~~~~l~~~~~---------~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 156 (622)
.++|||||++|+++.. .++.|.+||..+++.+..+....... ........++|+|||++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~-----------~~g~~p~~i~~spdg~~l 122 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV-----------QGLNYDGLFRQTTDGKFI 122 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC-----------CBCCCGGGEEECTTSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc-----------ccCCCcceEEECCCCCEE
Confidence 6899999999998752 23689999999999988876442110 000112478999999999
Q ss_pred EEeeC--CCcEEEEecCCcccccc-cccccCCCcccccccccceEEEEECCCC-CEEEEEeCCCeEEEEEcCC-CceEE-
Q psy2110 157 AVGCN--DGRIVLWDFLTRGIAKI-ISAHMHPEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLT-RGIAK- 230 (622)
Q Consensus 157 ~s~~~--dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iwd~~~-~~~~~- 230 (622)
+++.. +++|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.||.+.+|++.. ++...
T Consensus 123 ~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-------------~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~ 189 (361)
T 2oiz_A 123 VLQNASPATSIGIVDVAKGDYVEDVTAAAG-------------CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ 189 (361)
T ss_dssp EEEEESSSEEEEEEETTTTEEEEEEGGGTT-------------EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred EEECCCCCCeEEEEECCCCcEEEEEecCCC-------------cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence 98874 57899999999877655 43221 1234567765 5777888899999998865 44431
Q ss_pred -----EeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEEeC-----------CCCeEEEEEeCCCCeE
Q psy2110 231 -----IISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC--EQKYRF-----------PSPILKVQFHPRNDHM 292 (622)
Q Consensus 231 -----~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~-----------~~~v~~~~~~~~~~~~ 292 (622)
.+..+..++ .+.+++++..++..+.++.|.++|+..... ...+.. +.....++++|+++.+
T Consensus 190 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l 268 (361)
T 2oiz_A 190 SRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM 268 (361)
T ss_dssp EECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE
T ss_pred ccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE
Confidence 122222222 233467787888888899999999976542 222221 1122237899999888
Q ss_pred EEEeeC----------CCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc--cEEEEEec
Q psy2110 293 FLVCPM----------RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL--ELKASFKA 360 (622)
Q Consensus 293 ~~~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~ 360 (622)
+++... ...+.+||+.+.+.+..+..+. ...++|+|+|++|++++. +.|.+||..++ +.+.++..
T Consensus 269 yv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~ 345 (361)
T 2oiz_A 269 YVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG 345 (361)
T ss_dssp EEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred EEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence 777651 3479999999999888888776 889999999999999887 99999999999 99988877
Q ss_pred CCCCEEEEEEcCCCC
Q psy2110 361 STTAIKSIEFARRGN 375 (622)
Q Consensus 361 ~~~~i~~~~~s~~~~ 375 (622)
.......++++|+|+
T Consensus 346 ~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 346 AAEASLQVQFHPVGG 360 (361)
T ss_dssp SCSSEEEEEECCCSC
T ss_pred CCCCcEEEEecCCCC
Confidence 777788999999986
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=1.8e-19 Score=181.06 Aligned_cols=275 Identities=12% Similarity=0.058 Sum_probs=185.8
Q ss_pred eEEEEECCCCCEEEEEeCC---CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110 197 AVTCAFNKRGTLLAVGCND---GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK 273 (622)
Q Consensus 197 v~~~~~s~~g~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 273 (622)
+..++|+|||++|+..... ..|.+|++.+++.......+......+.|+|||++|+.++.++.|++||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 3456899999998877543 4688889888775544333333333488999999999999999999999999887776
Q ss_pred EeCCCC-eEE-------------------EEEeCCCCeEEEEe----eCCCcEEEEEecCCceeecccCCCCceEEEEEe
Q psy2110 274 YRFPSP-ILK-------------------VQFHPRNDHMFLVC----PMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFD 329 (622)
Q Consensus 274 ~~~~~~-v~~-------------------~~~~~~~~~~~~~~----~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 329 (622)
...+.. ... +.|+|+++.+++.. ..+..+++||+.++...... .+...+..+.|+
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s 196 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR 196 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence 663332 111 24567776544433 45667899999876544333 345667889999
Q ss_pred e-CCCEEEEEecC------CeEEEEeCCCccEEEEEecC-CCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecccccc
Q psy2110 330 R-RGQHVVTGNSK------GKVLVLSCPALELKASFKAS-TTAIKSIEFARRGNCLLVNTGD-----RLIRVYNHQEVLN 396 (622)
Q Consensus 330 ~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~~~ 396 (622)
| +++.|+..+.+ ..|.+|++..++........ ...+..++|+|+|++|++++.+ +.|++||+..
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~--- 273 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET--- 273 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT---
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC---
Confidence 9 78877665543 36889998766543332211 2357889999999988877543 4499999873
Q ss_pred cCCCCCCCcceeeeccccceeeeeEEEcC-CCCeEEEeeC---------------CCCeEEEEECCCCeeEEEEecCCCC
Q psy2110 397 AGKDGDPEPIQKLQDLVNKTMWKKCCFSG-DGEYVCAGSA---------------RQHALYIWEKSVGNLVKILHGTKGE 460 (622)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~---------------~d~~i~iwd~~~~~~~~~~~~~~~~ 460 (622)
+....+..+. . .. +.|+| ||+++++++. .+..|++||+.+++.. .+..+...
T Consensus 274 ----g~~~~l~~~~---~---~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~ 341 (396)
T 3c5m_A 274 ----LENEEVMVMP---P---CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTS 341 (396)
T ss_dssp ----CCEEEEEECC---S---EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCC
T ss_pred ----CCeEEeeeCC---C---CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCc
Confidence 1111111111 1 12 78999 9998887542 2468999999888753 44444431
Q ss_pred ----------ceeEEEECCCCCEEEEEe--CCcEEEeec
Q psy2110 461 ----------LLLDVVWHPVRPIIASIS--SGVVSLWAQ 487 (622)
Q Consensus 461 ----------~v~~v~~sp~~~~l~s~~--dg~v~iw~~ 487 (622)
.+..++|+|+++.|++++ ++...||.+
T Consensus 342 ~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 342 WDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 156789999999888776 566666665
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.82 E-value=7.6e-17 Score=166.68 Aligned_cols=321 Identities=12% Similarity=0.048 Sum_probs=218.4
Q ss_pred ceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcC--CCceEE
Q psy2110 41 NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS--VGNLVK 118 (622)
Q Consensus 41 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~--~~~~~~ 118 (622)
.++++...++.|.++|..+. +.+..+.....+..+.|||||+++++++. ++.|.+||+. +++.+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~------------~v~~~i~~g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY------------EIKTVLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC------------CEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEE
T ss_pred eEEEEeCCCCeEEEEECCCC------------eEEEEEeCCCCccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEeE
Confidence 34555556667777776431 11222222333457899999999999885 4899999995 888888
Q ss_pred EEeccCcceeEEEEeecCccccccceeEEEEc----CCCCEEEEeeC-CCcEEEEecCCcccccccccccCCCccccccc
Q psy2110 119 ILHGTKGELLLDVVEFDGALDCISLAVTCAFN----KRGTLLAVGCN-DGRIVLWDFLTRGIAKIISAHMHPEFDGALDC 193 (622)
Q Consensus 119 ~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s----~d~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (622)
.+.....+ ..++|+ |||+++++++. +++|.++|..+.+.+..+..............
T Consensus 235 ~i~~G~~P------------------~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p 296 (567)
T 1qks_A 235 EIKIGSEA------------------RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP 296 (567)
T ss_dssp EEECCSEE------------------EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEES
T ss_pred EEecCCCC------------------ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccC
Confidence 77765444 489999 69998887765 58999999988887776553211000000001
Q ss_pred ccceEEEEECCCCCEEEE-EeCCCeEEEEEcCCCceE--EEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCc
Q psy2110 194 ISLAVTCAFNKRGTLLAV-GCNDGRIVLWDFLTRGIA--KIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGE 269 (622)
Q Consensus 194 ~~~v~~~~~s~~g~~l~~-~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~ 269 (622)
...+..+.+++++..+++ ....|.|.++|..+.+.. ..+ ........+.|+|+|++|+++. .++.|.++|+.+++
T Consensus 297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 124677888888765544 455699999998765432 222 2334567889999999987776 46889999999999
Q ss_pred EEEEEeC-C---CCeEEEE-EeCCCCeEEEEee-CCCcEEEEEecC-------CceeecccCCCCceEEEEEeeCCCEEE
Q psy2110 270 CEQKYRF-P---SPILKVQ-FHPRNDHMFLVCP-MRHAAVLVDTDG-------DHQIVPIDEDSDLSIVASFDRRGQHVV 336 (622)
Q Consensus 270 ~~~~~~~-~---~~v~~~~-~~~~~~~~~~~~~-~~~~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 336 (622)
....+.. . .+-..+. ++|++..+++++. .++.|.++|... .+.+..+.........+..+|++++++
T Consensus 376 l~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~ 455 (567)
T 1qks_A 376 LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 455 (567)
T ss_dssp EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred EEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEE
Confidence 8877664 2 1112233 5887666666654 468999999987 345555554444434577899999999
Q ss_pred EEec-------CCeEEEEeCCCc-----c-EEEEEe--------cCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEe
Q psy2110 337 TGNS-------KGKVLVLSCPAL-----E-LKASFK--------ASTTAIKSIEFARRGNCLLVNT-----GDRLIRVYN 390 (622)
Q Consensus 337 ~~~~-------dg~i~i~d~~~~-----~-~~~~~~--------~~~~~i~~~~~s~~~~~l~~~~-----~d~~i~i~d 390 (622)
+... .++|.++|+.+. . ....+. .....+..+.|+|+|+++.++. .++.|.|+|
T Consensus 456 v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 456 VDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp EECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred EecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 8763 358999998876 2 223332 1245788999999999888763 268899999
Q ss_pred ccc
Q psy2110 391 HQE 393 (622)
Q Consensus 391 ~~~ 393 (622)
..+
T Consensus 536 ~~t 538 (567)
T 1qks_A 536 DKT 538 (567)
T ss_dssp TTT
T ss_pred CCC
Confidence 873
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.81 E-value=2.3e-17 Score=161.37 Aligned_cols=266 Identities=13% Similarity=0.084 Sum_probs=194.6
Q ss_pred eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110 84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG 163 (622)
Q Consensus 84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 163 (622)
+.+++|++++..++..+.+ +.++.| .++....+..+.... .+++|+++|++++++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~~g~l~~~~~~~~ 66 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISE-SELQTI---TAEPWLEISKKGLQL-----------------EGLNFDRQGQLFLLDVFEG 66 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCG-GGSCEE---ECEEEEEEESSCCCE-----------------EEEEECTTSCEEEEETTTC
T ss_pred cceeeecCCccceeEEeec-ccCccc---ccceeEEEeccCccc-----------------cCcEECCCCCEEEEECCCC
Confidence 4568899998887776544 788888 455666666665554 4899999999888888889
Q ss_pred cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC----CeEEEEEcCCCceEEEec--cCCc
Q psy2110 164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND----GRIVLWDFLTRGIAKIIS--AHMH 237 (622)
Q Consensus 164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~ 237 (622)
.|.+||..+++......... ..+.+++++++|+++++...+ +.|.+||..++.....+. .+..
T Consensus 67 ~i~~~d~~~~~~~~~~~~~~-----------~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 135 (333)
T 2dg1_A 67 NIFKINPETKEIKRPFVSHK-----------ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY 135 (333)
T ss_dssp EEEEECTTTCCEEEEEECSS-----------SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred EEEEEeCCCCcEEEEeeCCC-----------CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence 99999998876544321111 347899999999988777666 689999988776553433 2445
Q ss_pred CeeEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-
Q psy2110 238 PVCSISWSRNGYKIISAST------DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD- 310 (622)
Q Consensus 238 ~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~- 310 (622)
.+.+++++|+|+.+++... .+.|..+|..+++..........+..++|+|+++.++++...++.+.+|+....
T Consensus 136 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g 215 (333)
T 2dg1_A 136 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG 215 (333)
T ss_dssp CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC
Confidence 7899999999987776653 356777777666655444444567899999999877777777889999999642
Q ss_pred ceee--------cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCC------CEEEEEEcCCCCE
Q psy2110 311 HQIV--------PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTT------AIKSIEFARRGNC 376 (622)
Q Consensus 311 ~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~i~~~~~s~~~~~ 376 (622)
.... .+.. ...+..++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+|+++.
T Consensus 216 ~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~ 293 (333)
T 2dg1_A 216 VTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ 293 (333)
T ss_dssp SSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred cCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCE
Confidence 2111 1111 135678999999998888777889999998 5777777765433 6889999999887
Q ss_pred EEEEeCC
Q psy2110 377 LLVNTGD 383 (622)
Q Consensus 377 l~~~~~d 383 (622)
|++++.+
T Consensus 294 L~v~~~~ 300 (333)
T 2dg1_A 294 LIICSND 300 (333)
T ss_dssp EEEEEEC
T ss_pred EEEEeCc
Confidence 7766654
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=1.8e-18 Score=186.17 Aligned_cols=299 Identities=7% Similarity=-0.022 Sum_probs=191.7
Q ss_pred eEEEEcCCCCEEEEe--eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEE--CCCCCE-EEEEeC-CCeE
Q psy2110 145 VTCAFNKRGTLLAVG--CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAF--NKRGTL-LAVGCN-DGRI 218 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~-l~~~~~-dg~i 218 (622)
..++|+++.-++++. +.++...||....+.....+..+..... ........ ....| ||||+. |+.++. +..|
T Consensus 27 ~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~-~~~~~~~SPDg~~~la~~~~~~~~l 104 (662)
T 3azo_A 27 ACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVR-NRVFEYSG-FPWAGVPRPAGGPLLVFTHFGDQRL 104 (662)
T ss_dssp EEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBC-CCGGGTCC-CCEEEECCSSSSCEEEEEBTTTCCE
T ss_pred ceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCcccc-ccccccCC-ccceeeeecCCCeEEEEEECCCCeE
Confidence 589999887666666 5588999998654444444443321100 00000000 12344 499998 776654 4556
Q ss_pred EEEEcC--CCceEEEecc-----CCcCeeEEEEcCCCCEEEEEeCC----------CcEEEEECCC------CcEEEEE-
Q psy2110 219 VLWDFL--TRGIAKIISA-----HMHPVCSISWSRNGYKIISASTD----------NNVCIWDVLT------GECEQKY- 274 (622)
Q Consensus 219 ~iwd~~--~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~d----------~~i~iwd~~~------~~~~~~~- 274 (622)
+++++. .......+.. |...+.+++|+|||+.|++++.+ ..|++||+.+ ++.....
T Consensus 105 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 184 (662)
T 3azo_A 105 YAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD 184 (662)
T ss_dssp EEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC
T ss_pred EEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe
Confidence 666654 2044555665 67788999999999999998876 5899999998 6665555
Q ss_pred eCCCCeEEEEEeCCCCeEEEEeeCC-------CcEEEEEec-CC---ceeecccCCCCceEEEEEeeCCCEEEEEecCC-
Q psy2110 275 RFPSPILKVQFHPRNDHMFLVCPMR-------HAAVLVDTD-GD---HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKG- 342 (622)
Q Consensus 275 ~~~~~v~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg- 342 (622)
.+...+..++|+|||+.++++.... ..|++||+. ++ ........+...+..+.|+|||++++++..++
T Consensus 185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~ 264 (662)
T 3azo_A 185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW 264 (662)
T ss_dssp SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC
Confidence 4556778899999999877666443 479999998 45 33333334467788999999999888888887
Q ss_pred -eEEEEeCCCccEEEEEecCCCC--------EEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc
Q psy2110 343 -KVLVLSCPALELKASFKASTTA--------IKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV 413 (622)
Q Consensus 343 -~i~i~d~~~~~~~~~~~~~~~~--------i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 413 (622)
.|++||+.+++.......+... +..++|+|+++++++++. +.++||.++. ....+..+..+.
T Consensus 265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~--------~~~~~~~l~~~~ 335 (662)
T 3azo_A 265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDP--------ESGELVDAAGPW 335 (662)
T ss_dssp CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEET--------TTTEEEECCSSC
T ss_pred eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEEC--------CCCcEEEecCCC
Confidence 7777887777655443333222 567899999999999988 9999995541 111233333321
Q ss_pred cceeeeeEEEcCCCCeEEEe-eCCCC--eEEEEECCCCeeEEEEecC
Q psy2110 414 NKTMWKKCCFSGDGEYVCAG-SARQH--ALYIWEKSVGNLVKILHGT 457 (622)
Q Consensus 414 ~~~~~~~~~~spdg~~l~~~-~~~d~--~i~iwd~~~~~~~~~~~~~ 457 (622)
..+..+ ++++++.++.. +..+. .|+++|+.+++.......+
T Consensus 336 --~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~ 379 (662)
T 3azo_A 336 --TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARH 379 (662)
T ss_dssp --CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCC
T ss_pred --CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCC
Confidence 223333 15555544432 22232 5777788788754443333
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=8.4e-18 Score=181.02 Aligned_cols=294 Identities=10% Similarity=-0.024 Sum_probs=190.6
Q ss_pred cccceeEEEEcCCCCEEEEec-CCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEc--CCCCE-
Q psy2110 80 NKTMWKKCCFSGDGEYVCAGS-ARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFN--KRGTL- 155 (622)
Q Consensus 80 ~~~~~~~~~~sp~~~~l~~~~-~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s--~d~~~- 155 (622)
+...+..++|++++.+++... ..++...||....+.....+..|...+......+.+ ....|+ |||++
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSG--------FPWAGVPRPAGGPL 93 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCC--------CCEEEECCSSSSCE
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCC--------ccceeeeecCCCeE
Confidence 344566889998876666661 224789999976566666777666443100000000 034454 99998
Q ss_pred EEEeeC-CCcEEEEecC--C-cccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC----------CeEEEE
Q psy2110 156 LAVGCN-DGRIVLWDFL--T-RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND----------GRIVLW 221 (622)
Q Consensus 156 l~s~~~-dg~i~vw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----------g~i~iw 221 (622)
|+.++. +..|.+|++. . +. ...+...... .....+..++|+|||+.|++++.+ ..|++|
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAV------GGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCS------TTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCC-CEeccCCccC------CCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 776654 4566666665 2 33 3333321100 001246789999999999988876 589999
Q ss_pred EcCC------CceEEEec-cCCcCeeEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---cEEEEEe-CCCCeE
Q psy2110 222 DFLT------RGIAKIIS-AHMHPVCSISWSRNGYKIISASTD--------NNVCIWDVL-TG---ECEQKYR-FPSPIL 281 (622)
Q Consensus 222 d~~~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d--------~~i~iwd~~-~~---~~~~~~~-~~~~v~ 281 (622)
++.+ ++. ..+. .+...+..++|||||++|+.++.+ ..|++||+. ++ +...... +...+.
T Consensus 167 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~ 245 (662)
T 3azo_A 167 PLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA 245 (662)
T ss_dssp ETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred ECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence 9987 544 4555 666788899999999999988755 379999998 57 4444444 467899
Q ss_pred EEEEeCCCCeEEEEeeCCC--cEEEEEecCCceeecccCCCCc--------eEEEEEeeCCCEEEEEecCCeEEEE--eC
Q psy2110 282 KVQFHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDL--------SIVASFDRRGQHVVTGNSKGKVLVL--SC 349 (622)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~dg~i~i~--d~ 349 (622)
.+.|+|+++ +++++..++ .+++|++.++........+... +..++|+++++++++++. +.+++| |+
T Consensus 246 ~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~ 323 (662)
T 3azo_A 246 QAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDP 323 (662)
T ss_dssp EEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEET
T ss_pred ceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEEC
Confidence 999999999 777777777 5556665455433333222221 456888999999999988 888888 65
Q ss_pred CCccEEEEEecCCCCEEEE-EEcCCCCEEEEEeCCCc--EEEEecc
Q psy2110 350 PALELKASFKASTTAIKSI-EFARRGNCLLVNTGDRL--IRVYNHQ 392 (622)
Q Consensus 350 ~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~d~~--i~i~d~~ 392 (622)
.+++ +..+..+...+..+ +++.+.-.+++++.+.. |+++|+.
T Consensus 324 ~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~ 368 (662)
T 3azo_A 324 ESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTV 368 (662)
T ss_dssp TTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETT
T ss_pred CCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECC
Confidence 5555 67777777777777 44433333334455544 4445544
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=4.3e-17 Score=160.47 Aligned_cols=258 Identities=13% Similarity=0.085 Sum_probs=177.8
Q ss_pred eeEEEEcCCCCEEEEecC--------CCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCE
Q psy2110 84 WKKCCFSGDGEYVCAGSA--------RQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTL 155 (622)
Q Consensus 84 ~~~~~~sp~~~~l~~~~~--------~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 155 (622)
+...++ ||++|+.... .++.|.+|++.+++... + ..+ ..++|||||++
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~-----------------~~~~~SpDg~~ 72 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENA-----------------TMPRISPDGKK 72 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESC-----------------EEEEECTTSSE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccC-----------------CCeEECCCCCE
Confidence 345677 8998887531 13679999998877543 3 223 48999999999
Q ss_pred EEEeeCC---C--cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC---------------
Q psy2110 156 LAVGCND---G--RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND--------------- 215 (622)
Q Consensus 156 l~s~~~d---g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--------------- 215 (622)
|+.++.+ + .|.+|++.+++........ . +..++|+|||+.|+.++.+
T Consensus 73 la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~------------~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~ 139 (347)
T 2gop_A 73 IAFMRANEEKKVSEIWVADLETLSSKKILEAK------------N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA 139 (347)
T ss_dssp EEEEEEETTTTEEEEEEEETTTTEEEEEEEES------------E-EEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred EEEEEeccCCCcceEEEEECCCCceEEEEcCC------------C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence 9987754 3 3777788776544332221 2 6789999999999887642
Q ss_pred ------------CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCC-------cEEEEECCCCcEEEEEeC
Q psy2110 216 ------------GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDN-------NVCIWDVLTGECEQKYRF 276 (622)
Q Consensus 216 ------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~ 276 (622)
..|++|++.+++.+..+.. . .+..++|+||| .++++..+. ...||.+.+++.......
T Consensus 140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~ 216 (347)
T 2gop_A 140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK 216 (347)
T ss_dssp C---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE
T ss_pred eecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC
Confidence 5689999988877455554 3 78899999999 777776542 334444436655444444
Q ss_pred CCCeEEEEEeCCCCeEEEEeeCC-------CcEEEEEecCCceeecccCCCCceEE-EEEeeCCCEEEEEecCCeEEEEe
Q psy2110 277 PSPILKVQFHPRNDHMFLVCPMR-------HAAVLVDTDGDHQIVPIDEDSDLSIV-ASFDRRGQHVVTGNSKGKVLVLS 348 (622)
Q Consensus 277 ~~~v~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~i~d 348 (622)
..+..+ +|+|+.+++.+... ..+++|| ++........+...+.. +.|+ ++ ++++++.++.+++|
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~- 288 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY- 288 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-
Confidence 444444 99999877766443 4677777 44444444455666775 8899 88 88899999999999
Q ss_pred CCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcE-EEEecc
Q psy2110 349 CPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLI-RVYNHQ 392 (622)
Q Consensus 349 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i-~i~d~~ 392 (622)
+.+++... +..+...|.+++|+| ..+++++.++.. .+|.++
T Consensus 289 ~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 289 IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EESSSEEE-EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 87666543 444577899999999 667777766654 666653
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=6.3e-17 Score=157.64 Aligned_cols=241 Identities=12% Similarity=0.129 Sum_probs=184.4
Q ss_pred cceeEEEEcCCCCEEEEeeCC------------------------CcEEEEecCCcccccccccccCCCcccccccccce
Q psy2110 142 SLAVTCAFNKRGTLLAVGCND------------------------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLA 197 (622)
Q Consensus 142 ~~v~~~~~s~d~~~l~s~~~d------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 197 (622)
..+.+++++|+|+++++...+ +.|.+||..+++....+.... ....
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~----------~~~p 93 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL----------FYLP 93 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT----------CSSE
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc----------cCCc
Confidence 445799999999999888777 479999998887655443211 1246
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCc-eEEEe---------ccCCcCeeEEEEcC-CCCEEEEEe-CCCcEEEEEC
Q psy2110 198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRG-IAKII---------SAHMHPVCSISWSR-NGYKIISAS-TDNNVCIWDV 265 (622)
Q Consensus 198 ~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~s~-~~~~l~s~~-~d~~i~iwd~ 265 (622)
..++++++|+++++...++.|++|+..... .+..+ ..+......++++| ++..+++.+ .++.|++|+
T Consensus 94 ~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~- 172 (329)
T 3fvz_A 94 HGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS- 172 (329)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred eEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence 889999999988888888999999976442 44444 24445789999999 788777776 689999999
Q ss_pred CCCcEEEEEeCC-----------CCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc--cCCCCceEEEEEee--
Q psy2110 266 LTGECEQKYRFP-----------SPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI--DEDSDLSIVASFDR-- 330 (622)
Q Consensus 266 ~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~-- 330 (622)
.+++.+..+... .....++++|++..++++...++.|++|+..++..+..+ ..+...+..++++|
T Consensus 173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~ 252 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGF 252 (329)
T ss_dssp TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTE
T ss_pred CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCE
Confidence 567777766421 237899999997778888889999999999866665555 34456677888888
Q ss_pred ----CCCEEEEEecCCeEEEEeCCCccEEEEEe---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110 331 ----RGQHVVTGNSKGKVLVLSCPALELKASFK---ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 331 ----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 393 (622)
+|+.+++...+..|++|+..+++.+..+. .+.....+++++|+|..+++...++.|++|++..
T Consensus 253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 33333333345589999999999998874 5667789999999997777778899999999873
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=2e-16 Score=154.03 Aligned_cols=241 Identities=9% Similarity=0.111 Sum_probs=178.3
Q ss_pred CcCeeEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCcEEEEEeC--CCCeEEEEEeCCC
Q psy2110 236 MHPVCSISWSRNGYKIISASTD------------------------NNVCIWDVLTGECEQKYRF--PSPILKVQFHPRN 289 (622)
Q Consensus 236 ~~~v~~~~~s~~~~~l~s~~~d------------------------~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~ 289 (622)
-+.+.+++++++|+.+++...+ +.|.+||..+++....+.. -..+..++++|++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3578999999999988887776 4799999999998876652 3478899999998
Q ss_pred CeEEEEeeCCCcEEEEEecCCc-eeecc---------cCCCCceEEEEEee-CCCEEEEEe-cCCeEEEEeCCCccEEEE
Q psy2110 290 DHMFLVCPMRHAAVLVDTDGDH-QIVPI---------DEDSDLSIVASFDR-RGQHVVTGN-SKGKVLVLSCPALELKAS 357 (622)
Q Consensus 290 ~~~~~~~~~~~~i~~~d~~~~~-~~~~~---------~~~~~~~~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~ 357 (622)
. ++++...++.|++|+..... .+..+ ..+......++++| ++.++++.+ .++.|++|+ .+++.+..
T Consensus 103 ~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 103 N-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp C-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred C-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 8 77888888999999986542 33333 23344678999999 788888876 689999999 66777777
Q ss_pred EecCC----------CCEEEEEEcCC-CCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC-
Q psy2110 358 FKAST----------TAIKSIEFARR-GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG- 425 (622)
Q Consensus 358 ~~~~~----------~~i~~~~~s~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp- 425 (622)
+.... ....+++++|+ +.++++...++.|++|+... ...+..+...........++|+|
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~---------G~~~~~~~~~~~~~~~~~~~~~pg 251 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT---------KEFVREIKHASFGRNVFAISYIPG 251 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT---------CCEEEEECCTTTTTCEEEEEEETT
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC---------CcEEEEEeccccCCCcceeeecCC
Confidence 65322 33789999998 66666667788999999872 23444443333333445678888
Q ss_pred -----CCCeEEEeeCCCCeEEEEECCCCeeEEEEe---cCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110 426 -----DGEYVCAGSARQHALYIWEKSVGNLVKILH---GTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ 489 (622)
Q Consensus 426 -----dg~~l~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~ 489 (622)
+|+..++.. .+..|++|+..+++.+..+. ++... +..++++|+|.++++.. ++.|++|++.+
T Consensus 252 ~~~~~~g~~~v~~~-~~~~v~~~~~~~g~~~~~~~~~~~~~~~-p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQ-EPVQGFVMNFSSGEIIDVFKPVRKHFDM-PHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECCCCTTCS-CCCCEEEEETTTCCEEEEECCSSSCCSS-EEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEeCCCEEeccC-CCcEEEEEEcCCCeEEEEEcCCCCccCC-eeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 333222222 25689999999999988874 45554 89999999997667666 89999999853
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.78 E-value=2.9e-16 Score=152.63 Aligned_cols=282 Identities=12% Similarity=0.065 Sum_probs=197.1
Q ss_pred CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCee
Q psy2110 161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVC 240 (622)
Q Consensus 161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 240 (622)
.++.|.+||..+++....+.........+ .....+++. +++++++...++.|.+||..+++.+..+.. .....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg-----~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~ 87 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLG-----DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPR 87 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCB-----SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccC-----ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCc
Confidence 47899999999987665442110000000 124566664 345555666679999999999999888853 46788
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCCC------CeEEEEEeCCCCeEEEEee-CCCcEEEEEecCCce
Q psy2110 241 SISWSRNGYKIISAS-TDNNVCIWDVLTGECEQKYRFPS------PILKVQFHPRNDHMFLVCP-MRHAAVLVDTDGDHQ 312 (622)
Q Consensus 241 ~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~ 312 (622)
.++++++++ ++.+. .++.|.+||..+++....+.... ....+++ ++..++++.. .++.|.++|..+...
T Consensus 88 ~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~ 164 (328)
T 3dsm_A 88 YIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV 164 (328)
T ss_dssp EEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE
T ss_pred EEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE
Confidence 999999884 55554 78999999999999888887554 5667777 4555666655 488999999998876
Q ss_pred eecccCCCCceEEEEEeeCCCEEEEEecC----------CeEEEEeCCCccEEEEEecC-CCCEEEEEEcCCCCEEEEEe
Q psy2110 313 IVPIDEDSDLSIVASFDRRGQHVVTGNSK----------GKVLVLSCPALELKASFKAS-TTAIKSIEFARRGNCLLVNT 381 (622)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~ 381 (622)
...+... .....++++++|+++++...+ +.|.++|..+++....+... ......++|+|++++|+++.
T Consensus 165 ~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 165 VDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred EEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 6655543 234578899999877776654 78999999999888777643 24678999999999888876
Q ss_pred CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEee----CCCCeEEEEECCCCeeEEEEecC
Q psy2110 382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGS----ARQHALYIWEKSVGNLVKILHGT 457 (622)
Q Consensus 382 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~----~~d~~i~iwd~~~~~~~~~~~~~ 457 (622)
. .|.+||....... ....+.. .......++++|++..|.++. ..++.|.+||.. |+.+..+...
T Consensus 244 ~--~v~~~d~~t~~~~-------~~~~~~~--~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G 311 (328)
T 3dsm_A 244 N--DIWRMPVEADRVP-------VRPFLEF--RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG 311 (328)
T ss_dssp S--SEEEEETTCSSCC-------SSCSBCC--CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE
T ss_pred c--EEEEEECCCCcee-------eeeeecC--CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec
Confidence 5 8999998732110 0001110 123345689999655555554 347899999998 9988888653
Q ss_pred CCCceeEEEE
Q psy2110 458 KGELLLDVVW 467 (622)
Q Consensus 458 ~~~~v~~v~~ 467 (622)
.. ...++|
T Consensus 312 ~~--P~~~~~ 319 (328)
T 3dsm_A 312 II--PGAFCW 319 (328)
T ss_dssp ES--EEEEEE
T ss_pred cC--cceEEE
Confidence 32 566666
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.77 E-value=2.2e-16 Score=155.38 Aligned_cols=255 Identities=11% Similarity=0.102 Sum_probs=174.8
Q ss_pred ceEEEEECCCCCEEEEEe---------CCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC---C--cEE
Q psy2110 196 LAVTCAFNKRGTLLAVGC---------NDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD---N--NVC 261 (622)
Q Consensus 196 ~v~~~~~s~~g~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~--~i~ 261 (622)
.+..+++ ||+.++... .++.|.+|++.+++.. .+ ..+..++|+|||++|+.++.+ + .|+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 4667777 898887653 2567999999887654 33 568899999999999988754 2 488
Q ss_pred EEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeC--------------------------CCcEEEEEecCCceeec
Q psy2110 262 IWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPM--------------------------RHAAVLVDTDGDHQIVP 315 (622)
Q Consensus 262 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------------------~~~i~~~d~~~~~~~~~ 315 (622)
+|++.+++......... +..+.|+|+++.+++++.. ...+++|++.++..+..
T Consensus 89 ~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 167 (347)
T 2gop_A 89 VADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE 167 (347)
T ss_dssp EEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE
T ss_pred EEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee
Confidence 88999888777776555 9999999999987777643 25688899987765333
Q ss_pred ccCCCCceEEEEEeeCCCEEEEEecCC---------eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC---
Q psy2110 316 IDEDSDLSIVASFDRRGQHVVTGNSKG---------KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD--- 383 (622)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--- 383 (622)
+.. . .+..++|+|+| +++++..++ .|.++| +++. ..+..+ ..+..+ +|+|++|++++.+
T Consensus 168 l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 168 FEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred ecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence 333 3 67789999999 777775432 455556 5543 334434 455544 9999999888754
Q ss_pred -----CcEEEEecccccccCCCCCCCcceeeeccccceeeee-EEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC
Q psy2110 384 -----RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK-CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT 457 (622)
Q Consensus 384 -----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~ 457 (622)
..|++|| .. ....+... ....+.. +.|+ || ++++++. ++.++|| +.+++....+ .+
T Consensus 239 ~~~~~~~l~~~d-~~-----------~~~~l~~~-~~~~~~~~~~~s-dg-~~~~~~~-~~~~~l~-~~~g~~~~~~-~~ 300 (347)
T 2gop_A 239 YMSEHNKLYIYD-GK-----------EVMGILDE-VDRGVGQAKIKD-GK-VYFTLFE-EGSVNLY-IWDGEIKPIA-KG 300 (347)
T ss_dssp CCCSSCEEEEEC-SS-----------CEEESSTT-CCSEEEEEEEET-TE-EEEEEEE-TTEEEEE-EESSSEEEEE-CS
T ss_pred CccccceEEEEC-CC-----------ceEecccc-CCcccCCccEEc-Cc-EEEEEec-CCcEEEE-EcCCceEEEe-cC
Confidence 3577777 31 11111111 1223443 7899 88 7777776 8899999 8777654444 44
Q ss_pred CCCceeEEEECCCCCEEEEEe-CCcE-EEeecC
Q psy2110 458 KGELLLDVVWHPVRPIIASIS-SGVV-SLWAQN 488 (622)
Q Consensus 458 ~~~~v~~v~~sp~~~~l~s~~-dg~v-~iw~~~ 488 (622)
.+. |.+++|+| .++++++ ++.. .||.++
T Consensus 301 ~~~-v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 301 RHW-IMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp SSE-EEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CCe-EEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 444 99999999 6666666 5554 777664
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=1.5e-15 Score=144.91 Aligned_cols=240 Identities=10% Similarity=0.125 Sum_probs=174.2
Q ss_pred cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-------CCCeEEEEEeCCCCeEEEEeeC-CCcEEEE
Q psy2110 234 AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF-------PSPILKVQFHPRNDHMFLVCPM-RHAAVLV 305 (622)
Q Consensus 234 ~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~-~~~i~~~ 305 (622)
++-..+.+++++++++.+++...++.|.+||.. ++....+.. ...+..+++.+.+..++++... ++.+.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888888999999987 666666542 1467889995434445665543 7889999
Q ss_pred EecCCceeeccc-CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe--cCCCCEEEEEEcCCCCEEEEEeC
Q psy2110 306 DTDGDHQIVPID-EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--ASTTAIKSIEFARRGNCLLVNTG 382 (622)
Q Consensus 306 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~ 382 (622)
+. .+..+..+. .+...+..++++++|+++++...++.|.+|+. +++.+..+. .+...+.+++++++|+.+++.+.
T Consensus 106 d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred CC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 94 444444333 23456788999999998888778899999995 466666664 34457899999999997777777
Q ss_pred CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC-eEEEEECCCCeeEEEEecCCC-C
Q psy2110 383 DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH-ALYIWEKSVGNLVKILHGTKG-E 460 (622)
Q Consensus 383 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~-~i~iwd~~~~~~~~~~~~~~~-~ 460 (622)
++.|++|+... ..+..+...........++++++|+++++... ++ .|++|+. +++.+..+..+.. .
T Consensus 184 ~~~i~~~~~~g----------~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~ 251 (286)
T 1q7f_A 184 AHCVKVFNYEG----------QYLRQIGGEGITNYPIGVGINSNGEILIADNH-NNFNLTIFTQ-DGQLISALESKVKHA 251 (286)
T ss_dssp GTEEEEEETTC----------CEEEEESCTTTSCSEEEEEECTTCCEEEEECS-SSCEEEEECT-TSCEEEEEEESSCCS
T ss_pred CCEEEEEcCCC----------CEEEEEccCCccCCCcEEEECCCCCEEEEeCC-CCEEEEEECC-CCCEEEEEcccCCCC
Confidence 89999999752 22223322111133467899999988877765 54 9999995 5677777765432 2
Q ss_pred ceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110 461 LLLDVVWHPVRPIIASISSGVVSLWAQN 488 (622)
Q Consensus 461 ~v~~v~~sp~~~~l~s~~dg~v~iw~~~ 488 (622)
.+.+++++|+++++++..+++|++|++.
T Consensus 252 ~~~~i~~~~~g~l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 252 QCFDVALMDDGSVVLASKDYRLYIYRYV 279 (286)
T ss_dssp CEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred cceeEEECCCCcEEEECCCCeEEEEEcc
Confidence 2779999999987777449999999974
No 182
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=1.3e-15 Score=145.28 Aligned_cols=236 Identities=14% Similarity=0.194 Sum_probs=174.7
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec------cCCcCeeEEEE-cCCCCEEEEEeC-CCcEEEEECCC
Q psy2110 196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS------AHMHPVCSISW-SRNGYKIISAST-DNNVCIWDVLT 267 (622)
Q Consensus 196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~-s~~~~~l~s~~~-d~~i~iwd~~~ 267 (622)
.+.+++++++|+++++...++.|.+|+.. ++.+..+. ++...+..+++ .++++.+++... ++.|++|| .+
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~ 108 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QY 108 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TT
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CC
Confidence 46889999999988888889999999976 55555553 23457889999 467765555533 78999999 66
Q ss_pred CcEEEEEeC--CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc--CCCCceEEEEEeeCCCEEEEEecCCe
Q psy2110 268 GECEQKYRF--PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID--EDSDLSIVASFDRRGQHVVTGNSKGK 343 (622)
Q Consensus 268 ~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~ 343 (622)
++.+..+.. ...+..++++|++. ++++...++.+.+|+.... ....+. .+...+..++++++|+++++...++.
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred CcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCC-EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 777776652 35689999999986 6777777889999996543 333332 34456789999999998888788899
Q ss_pred EEEEeCCCccEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCC-cEEEEecccccccCCCCCCCcceeeeccccceeeee
Q psy2110 344 VLVLSCPALELKASFKAS--TTAIKSIEFARRGNCLLVNTGDR-LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420 (622)
Q Consensus 344 i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (622)
|++|+. +++.+..+..+ ...+.+++++++|+++++...++ .|++|+... ..+..+...........
T Consensus 187 i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g----------~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 187 VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG----------QLISALESKVKHAQCFD 255 (286)
T ss_dssp EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS----------CEEEEEEESSCCSCEEE
T ss_pred EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC----------CEEEEEcccCCCCccee
Confidence 999997 45666666543 36789999999999888877775 999998652 23344433322233467
Q ss_pred EEEcCCCCeEEEeeCCCCeEEEEECCCC
Q psy2110 421 CCFSGDGEYVCAGSARQHALYIWEKSVG 448 (622)
Q Consensus 421 ~~~spdg~~l~~~~~~d~~i~iwd~~~~ 448 (622)
++++|+|+++++ +. ++.|++|++...
T Consensus 256 i~~~~~g~l~vs-~~-~~~v~v~~~~~~ 281 (286)
T 1q7f_A 256 VALMDDGSVVLA-SK-DYRLYIYRYVQL 281 (286)
T ss_dssp EEEETTTEEEEE-ET-TTEEEEEECSCC
T ss_pred EEECCCCcEEEE-CC-CCeEEEEEcccc
Confidence 899999987766 55 889999997654
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=8.4e-16 Score=150.26 Aligned_cols=267 Identities=14% Similarity=0.108 Sum_probs=189.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE-e
Q psy2110 197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY-R 275 (622)
Q Consensus 197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~ 275 (622)
+.+++|++++..++..+.++.++.| .++....+..+...+.+++|+++|+.++++..++.|.+||..+++..... .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 84 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS 84 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC
T ss_pred cceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC
Confidence 5667888888777776778888888 34556667777778899999999997778888899999999988876655 3
Q ss_pred CCCCeEEEEEeCCCCeEEEEeeCC----CcEEEEEecCCceeecc--cCCCCceEEEEEeeCCCEEEEEec------CCe
Q psy2110 276 FPSPILKVQFHPRNDHMFLVCPMR----HAAVLVDTDGDHQIVPI--DEDSDLSIVASFDRRGQHVVTGNS------KGK 343 (622)
Q Consensus 276 ~~~~v~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~------dg~ 343 (622)
....+.+++++|++. ++++...+ +.+.+||..+......+ ......+..++++|+|+++++... .+.
T Consensus 85 ~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 85 HKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG 163 (333)
T ss_dssp SSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred CCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence 567899999999986 55555444 58999998776543222 223456888999999988877653 356
Q ss_pred EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccccCCCCCCCcceee-----ecccccee
Q psy2110 344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN-TGDRLIRVYNHQEVLNAGKDGDPEPIQKL-----QDLVNKTM 417 (622)
Q Consensus 344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 417 (622)
|..++..+++.... ......+..++|+|+++.|+++ +.++.|++|++.. ....+..+ ........
T Consensus 164 l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~--------~g~~~~~~~~~~~~~~~~~~~ 234 (333)
T 2dg1_A 164 VYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALED--------DGVTIQPFGATIPYYFTGHEG 234 (333)
T ss_dssp EEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT--------TSSSEEEEEEEEEEECCSSSE
T ss_pred EEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC--------CCcCcccccceEEEecCCCCC
Confidence 77788766554432 2233457899999999866555 4578999999862 01111111 01111124
Q ss_pred eeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCC-----ceeEEEECCCCCEEEEEe
Q psy2110 418 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE-----LLLDVVWHPVRPIIASIS 478 (622)
Q Consensus 418 ~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~v~~v~~sp~~~~l~s~~ 478 (622)
...++++++|++.++... ++.|++||. .++.+..+..+... .+.+++|+|++..|+.++
T Consensus 235 ~~~i~~d~~G~l~v~~~~-~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 235 PDSCCIDSDDNLYVAMYG-QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp EEEEEEBTTCCEEEEEET-TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CCceEECCCCCEEEEEcC-CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence 457899999997777665 788999998 57777777655320 389999999987776555
No 184
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.75 E-value=1.4e-15 Score=147.09 Aligned_cols=294 Identities=12% Similarity=0.093 Sum_probs=203.2
Q ss_pred EEEEcCCCCEEEEeeC-----CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-------
Q psy2110 146 TCAFNKRGTLLAVGCN-----DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC------- 213 (622)
Q Consensus 146 ~~~~s~d~~~l~s~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------- 213 (622)
.....|+++.+++... ++.|.+.|..+++.+..+..... .. ++++|||++++++.
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~------------P~-va~spDG~~lyVan~~~~r~~ 103 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL------------PN-PVVADDGSFIAHASTVFSRIA 103 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS------------CE-EEECTTSSCEEEEEEEEEETT
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC------------Cc-EEECCCCCEEEEEcccccccc
Confidence 3456799998888765 67999999999988877765432 23 89999999888775
Q ss_pred ---CCCeEEEEEcCCCceEEEeccCC-------cCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEEeCCCCeE
Q psy2110 214 ---NDGRIVLWDFLTRGIAKIISAHM-------HPVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQKYRFPSPIL 281 (622)
Q Consensus 214 ---~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~v~ 281 (622)
.++.|.+||..+++.+..+.-.. .....++|+|||++++++.. ++.|.++|+.+++.+..+..++.
T Consensus 104 ~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-- 181 (386)
T 3sjl_D 104 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-- 181 (386)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--
T ss_pred cCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--
Confidence 35789999999999888775321 24567999999999998874 68999999999999999876542
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEEEecC-Cceee----cccCCCCce-EEEEEe-eCCCEEEEEecCCeEEEEeCCCcc-
Q psy2110 282 KVQFHPRNDHMFLVCPMRHAAVLVDTDG-DHQIV----PIDEDSDLS-IVASFD-RRGQHVVTGNSKGKVLVLSCPALE- 353 (622)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~----~~~~~~~~~-~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~- 353 (622)
....|.+...+++.+.||.+.+.++.. ++... .+......+ ....|. ++|++++ .+.+|.|++.|+.+..
T Consensus 182 -~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~ 259 (386)
T 3sjl_D 182 -YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA 259 (386)
T ss_dssp -EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC
T ss_pred -ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc
Confidence 223354544555666677777777765 22211 111111112 123554 5775555 5568999999997654
Q ss_pred -EEEEEe----------cCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccccCCCCCCCcceeeecc
Q psy2110 354 -LKASFK----------ASTTAIKSIEFARRGNCLLVNTG----------DRLIRVYNHQEVLNAGKDGDPEPIQKLQDL 412 (622)
Q Consensus 354 -~~~~~~----------~~~~~i~~~~~s~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 412 (622)
....+. ........++++++++.+++... .+.|.++|+. ..+.+..+..
T Consensus 260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~---------t~kv~~~i~v- 329 (386)
T 3sjl_D 260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK---------TGERLAKFEM- 329 (386)
T ss_dssp EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT---------TCCEEEEEEE-
T ss_pred eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC---------CCeEEEEEEC-
Confidence 332222 01123345778999998888653 2568899988 3444555442
Q ss_pred ccceeeeeEEEcCCCC-eEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110 413 VNKTMWKKCCFSGDGE-YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPV 470 (622)
Q Consensus 413 ~~~~~~~~~~~spdg~-~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~ 470 (622)
......++|++|++ +|+++...++.|.++|..+++.++.+..... .+.|.+++|
T Consensus 330 --g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~--p~~l~~s~d 384 (386)
T 3sjl_D 330 --GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH--GPQVITTAD 384 (386)
T ss_dssp --EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS--SCCEEEECC
T ss_pred --CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC--CceeEECCc
Confidence 23456789999997 6777665588999999999999999876543 566777776
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=7.1e-16 Score=166.86 Aligned_cols=236 Identities=9% Similarity=-0.006 Sum_probs=171.1
Q ss_pred eEEEEcCCCCEEEEeeCCC-----cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe--
Q psy2110 145 VTCAFNKRGTLLAVGCNDG-----RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR-- 217 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-- 217 (622)
..++|||||++||.++.++ .|++||+.+++........ ..+..++|+|||+.|++++.++.
T Consensus 128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~------------~~~~~~~wspDg~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER------------VKFSCMAWTHDGKGMFYNAYPQQDG 195 (710)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE------------ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC------------cccceEEEEeCCCEEEEEEECCccc
Confidence 5899999999998776543 8999999998765432211 11356899999999999887765
Q ss_pred --------------EEEEEcCCCceE--EEe--ccCCcCeeEEEEcCCCCEEEEEeC-----CCcEEEEECCC------C
Q psy2110 218 --------------IVLWDFLTRGIA--KII--SAHMHPVCSISWSRNGYKIISAST-----DNNVCIWDVLT------G 268 (622)
Q Consensus 218 --------------i~iwd~~~~~~~--~~~--~~~~~~v~~~~~s~~~~~l~s~~~-----d~~i~iwd~~~------~ 268 (622)
|++|++.+++.. ..+ ..|...+..+.|+|||++|+.++. +..|++||+.+ +
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 999999887632 222 234556789999999999988765 56899999986 5
Q ss_pred --cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC---CcEEEEEecCCc--eeecccCCC--CceEEEEEeeCCCEEEEEe
Q psy2110 269 --ECEQKYRFPSPILKVQFHPRNDHMFLVCPMR---HAAVLVDTDGDH--QIVPIDEDS--DLSIVASFDRRGQHVVTGN 339 (622)
Q Consensus 269 --~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 339 (622)
.......+...+.. .|+|+++.+++.+..+ ..+.+|++.+.. ....+..+. ..+..+++++++.++++..
T Consensus 276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence 23333334444443 5889999887776544 368899987653 123333333 3577788887777888888
Q ss_pred cCC--eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe----CCCcEEEEeccc
Q psy2110 340 SKG--KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT----GDRLIRVYNHQE 393 (622)
Q Consensus 340 ~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~d~~i~i~d~~~ 393 (622)
.++ .|.+|++.+++.+..+..+...+..+.++|+++.++... ..+.|++||+.+
T Consensus 355 ~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 355 HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 887 466778877888888888878889999999998766542 247899999873
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.74 E-value=2.2e-15 Score=163.08 Aligned_cols=276 Identities=10% Similarity=0.025 Sum_probs=188.2
Q ss_pred CCCCEEEEEeCCC-----eEEEEEcCCCceEEEec------cCCcCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCC
Q psy2110 204 KRGTLLAVGCNDG-----RIVLWDFLTRGIAKIIS------AHMHPVCSISWSRNGYKIISASTDN-----NVCIWDVLT 267 (622)
Q Consensus 204 ~~g~~l~~~~~dg-----~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~ 267 (622)
|+|++++....++ .+.+.+...++....+. +|...+..++|||||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8898887665332 33444433444332221 3444688999999999998876543 899999999
Q ss_pred CcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC---------------cEEEEEecCCc----eeecccCCCCceEEEEE
Q psy2110 268 GECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH---------------AAVLVDTDGDH----QIVPIDEDSDLSIVASF 328 (622)
Q Consensus 268 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~i~~~d~~~~~----~~~~~~~~~~~~~~~~~ 328 (622)
++..........+..++|+||++.++++..... .|++|++.++. .+.....+...+..+.|
T Consensus 161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~ 240 (710)
T 2xdw_A 161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL 240 (710)
T ss_dssp TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence 988765433334678999999998777654332 39999998764 22233334556778999
Q ss_pred eeCCCEEEEEec-----CCeEEEEeCCC------cc-EEEEEecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEecc
Q psy2110 329 DRRGQHVVTGNS-----KGKVLVLSCPA------LE-LKASFKASTTAIKSIEFARRGNCLLVNTGD----RLIRVYNHQ 392 (622)
Q Consensus 329 ~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----~~i~i~d~~ 392 (622)
+|+|++|+..+. +..|++||+.+ +. ....+..+...+.. .|+|+|+.|+..+.. +.|.+|++.
T Consensus 241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 319 (710)
T 2xdw_A 241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT 319 (710)
T ss_dssp CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 999999988765 56899999876 43 35556666666655 488999988877653 359999987
Q ss_pred cccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC--eEEEEECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110 393 EVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH--ALYIWEKSVGNLVKILHGTKGELLLDVVWHPV 470 (622)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~ 470 (622)
.. .....+.+..+.....+..++|++++.++++... ++ .|++|++.+|+.+..+..+.+. +..++++|+
T Consensus 320 ~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~-~g~~~l~~~~~~~g~~~~~l~~~~~~-v~~~~~s~d 390 (710)
T 2xdw_A 320 DP-------EESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH-DVKNTLQLHDLATGALLKIFPLEVGS-VVGYSGQKK 390 (710)
T ss_dssp SC-------CGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE-TTEEEEEEEETTTCCEEEEECCCSSE-EEEEECCTT
T ss_pred CC-------CcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE-CCEEEEEEEECCCCCEEEecCCCCce-EEEEecCCC
Confidence 31 1112233333322234566788877777777765 65 4777888788888888877555 899999999
Q ss_pred CCEEEEE-e----CCcEEEeecCC
Q psy2110 471 RPIIASI-S----SGVVSLWAQNQ 489 (622)
Q Consensus 471 ~~~l~s~-~----dg~v~iw~~~~ 489 (622)
++.|+.. + .+++++|++.+
T Consensus 391 ~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 391 DTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp CSEEEEEEECSSCCCEEEEEETTS
T ss_pred CCEEEEEEeCCCCCCEEEEEECCC
Confidence 9866533 2 37899999854
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.74 E-value=2.8e-16 Score=169.56 Aligned_cols=275 Identities=12% Similarity=-0.010 Sum_probs=186.6
Q ss_pred EEcCCCCEEEEecCCCC----eEEEEEcCCCceEEEEe------ccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110 88 CFSGDGEYVCAGSARQH----ALYIWEKSVGNLVKILH------GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157 (622)
Q Consensus 88 ~~sp~~~~l~~~~~~~~----~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 157 (622)
..+|+|++++....+.+ .|.+.+...++....+. +|...+ .+++|||||++||
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~-----------------~~~~~SPDG~~la 136 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSL-----------------GTWAVSWDGKKVA 136 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEE-----------------EEEEECTTSSEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEE-----------------EEEEECCCCCEEE
Confidence 34589999988765432 34444444444333332 232223 5899999999998
Q ss_pred -----EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe-------------EE
Q psy2110 158 -----VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR-------------IV 219 (622)
Q Consensus 158 -----s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-------------i~ 219 (622)
.|+.+..|++||+.+++.+... +... .....++|+|||+.|++++.+.. |+
T Consensus 137 ~~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~~---------~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 137 FAQKPNAADEAVLHVIDVDSGEWSKVD--VIEG---------GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp EEEEETTCSCCEEEEEETTTCCBCSSC--CBSC---------CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred EEECCCCCceEEEEEEECCCCCCcCCc--ccCc---------ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence 4445578999999998764110 1100 01146799999999999988765 99
Q ss_pred EEEcCCCc----eEEEeccCCcCeeEEEEcCCCCEEEEEeCCC----cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCe
Q psy2110 220 LWDFLTRG----IAKIISAHMHPVCSISWSRNGYKIISASTDN----NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDH 291 (622)
Q Consensus 220 iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 291 (622)
+|++.++. .+.....|...+.++.|+|||++|+.++.++ .|++|+..+++......+...+....+ +++.
T Consensus 206 ~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~- 283 (695)
T 2bkl_A 206 YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR- 283 (695)
T ss_dssp EEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-
T ss_pred EEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-
Confidence 99998876 3333334556789999999999998887666 688887766766665555556666666 6666
Q ss_pred EEEEee---CCCcEEEEEecCCce---eecccCC-CCceEEEEEeeCCCEEEEEecCCeEEEEeCC-CccEEEEEecC-C
Q psy2110 292 MFLVCP---MRHAAVLVDTDGDHQ---IVPIDED-SDLSIVASFDRRGQHVVTGNSKGKVLVLSCP-ALELKASFKAS-T 362 (622)
Q Consensus 292 ~~~~~~---~~~~i~~~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~-~ 362 (622)
+++.+. .++.+.+||+.+... ...+..+ ...+..++++ ++.++++...++..++|.+. +++....+..+ .
T Consensus 284 l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~ 362 (695)
T 2bkl_A 284 FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGV 362 (695)
T ss_dssp EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSS
T ss_pred EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCC
Confidence 666655 357899999876542 2222222 4456777887 67788888889887777554 45666666655 5
Q ss_pred CCEEEEEEcCCCCEEEEEeC----CCcEEEEeccc
Q psy2110 363 TAIKSIEFARRGNCLLVNTG----DRLIRVYNHQE 393 (622)
Q Consensus 363 ~~i~~~~~s~~~~~l~~~~~----d~~i~i~d~~~ 393 (622)
..+..++++|+++.++.... .+.|++||+.+
T Consensus 363 ~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 363 GAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp SEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 67788899999987775432 46899999873
No 188
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.73 E-value=5.2e-14 Score=138.47 Aligned_cols=276 Identities=13% Similarity=0.065 Sum_probs=191.9
Q ss_pred EcCCCCEEEEeeC--CC---cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe----------
Q psy2110 149 FNKRGTLLAVGCN--DG---RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC---------- 213 (622)
Q Consensus 149 ~s~d~~~l~s~~~--dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---------- 213 (622)
..|++++++++.. .. +|.+||..+++.+..+.... .. .++++|||++|+++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~------------~p-~i~~spDg~~lyv~n~~~~~~~rg~ 94 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF------------LP-NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC------------CC-CeEECCCCCEEEEEeccccccccCC
Confidence 4477877777653 22 88999999988765554322 12 789999999999886
Q ss_pred CCCeEEEEEcCCCceEEEeccC-------CcCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEE-EeCCCCeEEE
Q psy2110 214 NDGRIVLWDFLTRGIAKIISAH-------MHPVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQK-YRFPSPILKV 283 (622)
Q Consensus 214 ~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~v~~~ 283 (622)
.++.|.+||..+.+.+..+... ......+.|+|||++|+++.. ++.|.++| .+++.+.. +..+.. +
T Consensus 95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~ 170 (373)
T 2mad_H 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---Y 170 (373)
T ss_pred CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---E
Confidence 3678999999988877766432 123458999999999998874 47899999 99998888 765443 5
Q ss_pred EEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc-----CCCC-ceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc--EE
Q psy2110 284 QFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID-----EDSD-LSIVASFDRRGQHVVTGNSKGKVLVLSCPALE--LK 355 (622)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~ 355 (622)
.+.|+++..+++...++.+.+++. +.+...... .... ......+.+++..++..+..+.+.+.|+.... .+
T Consensus 171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~ 249 (373)
T 2mad_H 171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK 249 (373)
T ss_pred EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe
Confidence 566777777788888999999999 655442211 1111 12234567776665555577899999987553 22
Q ss_pred EEEec----------CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccccCCCCCCCcceeeeccccc
Q psy2110 356 ASFKA----------STTAIKSIEFARRGNCLLVNTG----------DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK 415 (622)
Q Consensus 356 ~~~~~----------~~~~i~~~~~s~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (622)
..+.. .......++++|+++.++++.. .+.|.++|.. ..+.+..+...
T Consensus 250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~---------t~~vv~~i~~g--- 317 (373)
T 2mad_H 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL---------VGQTSSQISLG--- 317 (373)
T ss_pred eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC---------CCEEEEEEECC---
Confidence 33321 1122445789999998887653 3579999987 33444444321
Q ss_pred eeeeeEEEcCCCC-eEEEeeCCCCeEEEEECCCCeeEEEE
Q psy2110 416 TMWKKCCFSGDGE-YVCAGSARQHALYIWEKSVGNLVKIL 454 (622)
Q Consensus 416 ~~~~~~~~spdg~-~l~~~~~~d~~i~iwd~~~~~~~~~~ 454 (622)
.....++|+|||+ +++++...++.|.++|..+++.++.+
T Consensus 318 ~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 318 HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 1345789999999 66666645789999999999998874
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.72 E-value=7.8e-15 Score=142.53 Aligned_cols=252 Identities=14% Similarity=0.084 Sum_probs=174.3
Q ss_pred eEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCc
Q psy2110 85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 164 (622)
Q Consensus 85 ~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~ 164 (622)
..+++.. ++..++.. .++.|.+||..+++.+.++.....+ ..+++++++++.++...++.
T Consensus 47 ~~i~~~~-~~lyv~~~-~~~~v~viD~~t~~~~~~i~~~~~p------------------~~i~~~~~g~lyv~~~~~~~ 106 (328)
T 3dsm_A 47 QSMVIRD-GIGWIVVN-NSHVIFAIDINTFKEVGRITGFTSP------------------RYIHFLSDEKAYVTQIWDYR 106 (328)
T ss_dssp EEEEEET-TEEEEEEG-GGTEEEEEETTTCCEEEEEECCSSE------------------EEEEEEETTEEEEEEBSCSE
T ss_pred eEEEEEC-CEEEEEEc-CCCEEEEEECcccEEEEEcCCCCCC------------------cEEEEeCCCeEEEEECCCCe
Confidence 3566643 33333333 3589999999999998888644332 48999999854444447899
Q ss_pred EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe--CCCeEEEEEcCCCceEEEeccCCcCeeEE
Q psy2110 165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC--NDGRIVLWDFLTRGIAKIISAHMHPVCSI 242 (622)
Q Consensus 165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 242 (622)
|.+||..+++....+...... +.. .....+++ ++..|+++. .++.|.++|+.+++....+... .....+
T Consensus 107 v~~iD~~t~~~~~~i~~g~~~---~~~---~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i 177 (328)
T 3dsm_A 107 IFIINPKTYEITGYIECPDMD---MES---GSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSL 177 (328)
T ss_dssp EEEEETTTTEEEEEEECTTCC---TTT---CBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCC
T ss_pred EEEEECCCCeEEEEEEcCCcc---ccC---CCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccce
Confidence 999999998776655433200 000 01234556 344555554 4889999999999888777653 345789
Q ss_pred EEcCCCCEEEEEeCC----------CcEEEEECCCCcEEEEEeC--CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC
Q psy2110 243 SWSRNGYKIISASTD----------NNVCIWDVLTGECEQKYRF--PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD 310 (622)
Q Consensus 243 ~~s~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 310 (622)
+++++|++++++..+ +.|.++|..+++....+.. ......++++|+++.++++.. .+.++|..+.
T Consensus 178 ~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~ 254 (328)
T 3dsm_A 178 VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEAD 254 (328)
T ss_dssp EECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCS
T ss_pred EEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCC
Confidence 999999877666554 7899999999998877774 347899999999987766544 8999999776
Q ss_pred ceeec--ccCCCCceEEEEEee-CCCEEEEE----ecCCeEEEEeCCCccEEEEEecCCCCEEEEEE
Q psy2110 311 HQIVP--IDEDSDLSIVASFDR-RGQHVVTG----NSKGKVLVLSCPALELKASFKASTTAIKSIEF 370 (622)
Q Consensus 311 ~~~~~--~~~~~~~~~~~~~~~-~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 370 (622)
..... +.........++++| ++..+++. ..++.|.+||.. ++.+.++... ..-..++|
T Consensus 255 ~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 255 RVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp SCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred ceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 54321 122245678899999 45555555 567899999988 8888877643 22244554
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=6.1e-15 Score=141.42 Aligned_cols=228 Identities=12% Similarity=0.035 Sum_probs=167.5
Q ss_pred eEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110 145 VTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF 223 (622)
Q Consensus 145 ~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~ 223 (622)
.+++|+|+++ +++++..++.|..|+..++ ...+..+. ..+.+++++++|+++++...++.|.+||.
T Consensus 31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~-----------~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS-----------HHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSC-----------SSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred cCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCC-----------CCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 5899999998 7788888999999998876 33333221 24789999999998877777789999999
Q ss_pred CCCceEEEeccC----CcCeeEEEEcCCCCEEEEEe-----------------CCCcEEEEECCCCcEEEEEeCCCCeEE
Q psy2110 224 LTRGIAKIISAH----MHPVCSISWSRNGYKIISAS-----------------TDNNVCIWDVLTGECEQKYRFPSPILK 282 (622)
Q Consensus 224 ~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~v~~ 282 (622)
.+++........ ...+..++++++|+++++.+ ..+.|..++.. ++.............
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG 176 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence 887755443221 23467899999999888732 13456666655 555544455667889
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEEEec-CCce---eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEE
Q psy2110 283 VQFHPRNDHMFLVCPMRHAAVLVDTD-GDHQ---IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF 358 (622)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 358 (622)
++|+|+++.+ ++...++.+++|++. .+.. ...+..+...+..++++++|+++++. ++.|.+|+.. ++.+..+
T Consensus 177 i~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 177 LAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV 252 (296)
T ss_dssp EEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred EEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE
Confidence 9999999977 888888999999996 3222 12223344456678999999876665 7889999986 7888888
Q ss_pred ecCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEecc
Q psy2110 359 KASTTAIKSIEF-ARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 359 ~~~~~~i~~~~~-s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
..+.. +++++| +|+++.|++++.++ +..++..
T Consensus 253 ~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~ 285 (296)
T 3e5z_A 253 LTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETN 285 (296)
T ss_dssp ECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred ECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence 87777 899999 68999899888763 3344443
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.71 E-value=1.2e-13 Score=135.96 Aligned_cols=273 Identities=10% Similarity=0.036 Sum_probs=190.7
Q ss_pred ECCCCCEEEEEeC--CC---eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q psy2110 202 FNKRGTLLAVGCN--DG---RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS----------TDNNVCIWDVL 266 (622)
Q Consensus 202 ~s~~g~~l~~~~~--dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd~~ 266 (622)
..|+++++++... .. .|.++|..+++.+..+.....+ .++++|||++++.+. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777777653 22 7899999999988888765444 999999999999886 35789999999
Q ss_pred CCcEEEEEeCC--------CCeEEEEEeCCCCeEEEEeeC-CCcEEEEEecCCceeec-ccCCCCceEEEEEeeCC-CEE
Q psy2110 267 TGECEQKYRFP--------SPILKVQFHPRNDHMFLVCPM-RHAAVLVDTDGDHQIVP-IDEDSDLSIVASFDRRG-QHV 335 (622)
Q Consensus 267 ~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~l 335 (622)
+.+.+..+... .....+.++|++++++++... ++.+.++| .+.+.+.. +.... ++.+.+++ +.+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTF 180 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceE
Confidence 99888877643 235689999999988777654 68899999 88877666 54322 23445555 455
Q ss_pred EEEecCCeEEEEeCCCccEEEEEe-----cCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceee
Q psy2110 336 VTGNSKGKVLVLSCPALELKASFK-----ASTTA-IKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKL 409 (622)
Q Consensus 336 ~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~-i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 409 (622)
++.+.||.+.+++. +++...... ....+ .....+.+++..++..+..+.+.+.|+... ....+..+
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~-------~~~v~~~~ 252 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA-------GATNKAPI 252 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC-------cceEeeee
Confidence 66778999999999 887664322 11122 123456777666666667888999998631 11111111
Q ss_pred ecc--------ccceeeeeEEEcCCCCeEEEeeCC---------CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC
Q psy2110 410 QDL--------VNKTMWKKCCFSGDGEYVCAGSAR---------QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP 472 (622)
Q Consensus 410 ~~~--------~~~~~~~~~~~spdg~~l~~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 472 (622)
... ........++++||++.++++... .+.|.++|..+++.+..+.... . ...++|+||++
T Consensus 253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~-p~~i~~s~Dg~ 330 (373)
T 2mad_H 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-D-VDAISVAQDGG 330 (373)
T ss_pred eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-C-cCeEEECCCCC
Confidence 100 001112336899999988776431 3579999999999999986544 2 78999999999
Q ss_pred -EEEEEe--CCcEEEeecCCcc
Q psy2110 473 -IIASIS--SGVVSLWAQNQVE 491 (622)
Q Consensus 473 -~l~s~~--dg~v~iw~~~~~~ 491 (622)
+++++. ++.|.++|+.+.+
T Consensus 331 ~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 331 PDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred eEEEEEcCCCCeEEEEECCCCC
Confidence 777765 7999999997544
No 192
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=2.3e-13 Score=130.48 Aligned_cols=272 Identities=8% Similarity=0.019 Sum_probs=190.6
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE-eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110 196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI-ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274 (622)
Q Consensus 196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 274 (622)
.+.++++.++|+++++...++.|.+|+.. ++.... +..+...+.+++++++|..+++...++.|..||.. ++. ..+
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~ 92 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEY 92 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEE
Confidence 47899999999988776667899999987 544332 22345678999999999877777667889999976 443 333
Q ss_pred e---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110 275 R---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA 351 (622)
Q Consensus 275 ~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 351 (622)
. ....+..+++.+++. ++++...++.+..+|................+..++++++|+.+++...++.|..||. +
T Consensus 93 ~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~ 170 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S 170 (299)
T ss_dssp ECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred eCCCcCCCceeeEECCCCC-EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence 3 345788999999875 5666666788999988333322233334556789999999988887777789999998 6
Q ss_pred ccEEEE-EecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeE
Q psy2110 352 LELKAS-FKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYV 430 (622)
Q Consensus 352 ~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 430 (622)
++.... +......+.+++++++|+.+++...++.|.+|+... .+..+........+..++++++|+..
T Consensus 171 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----------~~~~~~~~~~~~~~~~i~~~~~g~l~ 239 (299)
T 2z2n_A 171 GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSG-----------EITEFKIPTPNARPHAITAGAGIDLW 239 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-----------CEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCC-----------cEEEEECCCCCCCceeEEECCCCCEE
Confidence 665442 233456688999999999766666678899998731 11222212223445678999999866
Q ss_pred EEeeCCCCeEEEEECCCCeeEEEEe--cCCCCceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110 431 CAGSARQHALYIWEKSVGNLVKILH--GTKGELLLDVVWHPVRPIIASISSGVVSLWAQN 488 (622)
Q Consensus 431 ~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~ 488 (622)
++... ++.|.+|+. +++. ..+. .+... +.++++ +++.+.++...+.+..+++.
T Consensus 240 v~~~~-~~~i~~~d~-~g~~-~~~~~~~~~~~-~~~i~~-~~g~l~v~~~~~~l~~~~~~ 294 (299)
T 2z2n_A 240 FTEWG-ANKIGRLTS-NNII-EEYPIQIKSAE-PHGICF-DGETIWFAMECDKIGKLTLI 294 (299)
T ss_dssp EEETT-TTEEEEEET-TTEE-EEEECSSSSCC-EEEEEE-CSSCEEEEETTTEEEEEEEC
T ss_pred EeccC-CceEEEECC-CCce-EEEeCCCCCCc-cceEEe-cCCCEEEEecCCcEEEEEcC
Confidence 55544 778999998 4653 3332 33333 899999 88887777655666666653
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.71 E-value=1.5e-14 Score=139.90 Aligned_cols=277 Identities=11% Similarity=0.074 Sum_probs=197.0
Q ss_pred EEECCCCCEEEEEeC-----CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe----------CCCcEEEEE
Q psy2110 200 CAFNKRGTLLAVGCN-----DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS----------TDNNVCIWD 264 (622)
Q Consensus 200 ~~~s~~g~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd 264 (622)
....|+++.+++... ++.|.++|..+++.+..+.....+ .++++|||++++++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 355789999888865 579999999999999888865555 499999999888775 357899999
Q ss_pred CCCCcEEEEEeCC--------CCeEEEEEeCCCCeEEEEee-CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEE
Q psy2110 265 VLTGECEQKYRFP--------SPILKVQFHPRNDHMFLVCP-MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHV 335 (622)
Q Consensus 265 ~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 335 (622)
..+.+.+..+..+ .....+.++|+|++++++.. .++.+.++|+.+.+.+..+..... ...+....+.+
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCcee
Confidence 9999999888643 24667999999998877765 378999999999988777754321 23344455677
Q ss_pred EEEecCCeEEEEeCCC-ccEEEEEecC----CCCEE-EEEEc-CCCCEEEEEeCCCcEEEEecccccccCCCCCCCccee
Q psy2110 336 VTGNSKGKVLVLSCPA-LELKASFKAS----TTAIK-SIEFA-RRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK 408 (622)
Q Consensus 336 ~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~i~-~~~~s-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 408 (622)
++.+.||.+.+.++.+ ++.......+ ...+. ...|. ++|+ ++..+.++.|++.|+... ....+..
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~~vs~~g~V~v~d~~~~-------~~~v~~~ 264 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDLSSG-------DAKFLPA 264 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEECTTS-------SCEECCC
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc-EEEEeCCCEEEEEECCCC-------cceeecc
Confidence 7888899999999876 5543322111 11221 24564 6775 444666899999998631 1111222
Q ss_pred ee--------ccccceeeeeEEEcCCCCeEEEeeCC---------CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCC
Q psy2110 409 LQ--------DLVNKTMWKKCCFSGDGEYVCAGSAR---------QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVR 471 (622)
Q Consensus 409 ~~--------~~~~~~~~~~~~~spdg~~l~~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~ 471 (622)
+. .......+..++++++++.++..... .+.|.++|+.+++.++.+.... .+..++++|++
T Consensus 265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~ 342 (386)
T 3sjl_D 265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDE 342 (386)
T ss_dssp EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSS
T ss_pred eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCC
Confidence 21 00111223347889999988876421 2579999999999999887544 28899999999
Q ss_pred C-EEEEEe--CCcEEEeecCCcc
Q psy2110 472 P-IIASIS--SGVVSLWAQNQVE 491 (622)
Q Consensus 472 ~-~l~s~~--dg~v~iw~~~~~~ 491 (622)
+ +|+++. ++.|.++|..+..
T Consensus 343 ~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 343 KPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp SCEEEEEETTTTEEEEEETTTCC
T ss_pred CeEEEEEcCCCCeEEEEECCCCc
Confidence 7 666654 8999999986543
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=1.7e-13 Score=131.39 Aligned_cols=275 Identities=9% Similarity=-0.019 Sum_probs=188.3
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL 224 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~ 224 (622)
.++++.++|+++++...++.|.+|+.. +... .+..... ...+..++++++|+++++...++.|..|+..
T Consensus 18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~---------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTP---------DAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSST---------TCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred cceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcc---------cCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 699999999987776667899999987 5432 2221110 1347889999999988877768889999976
Q ss_pred CCceE-EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCc
Q psy2110 225 TRGIA-KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHA 301 (622)
Q Consensus 225 ~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~ 301 (622)
++.. ..+......+.++++.++|+.+++...++.|.+||. +++...... ....+..+++.+++. ++++...++.
T Consensus 87 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~ 163 (299)
T 2z2n_A 87 -GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNA 163 (299)
T ss_dssp -SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTE
T ss_pred -CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeCCCCE
Confidence 3322 222234567899999999987777777789999998 565543322 345688999999885 5666666788
Q ss_pred EEEEEecCCcee-ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEE-EecCCCCEEEEEEcCCCCEEEE
Q psy2110 302 AVLVDTDGDHQI-VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKAS-FKASTTAIKSIEFARRGNCLLV 379 (622)
Q Consensus 302 i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~ 379 (622)
+..+|. ++... .........+..++++++|+++++...++.|.+|+. +++.... +..+...+.+++++++|+.+++
T Consensus 164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence 999998 43332 223334456778999999997777767889999998 6664432 2334567899999999996666
Q ss_pred EeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe
Q psy2110 380 NTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN 449 (622)
Q Consensus 380 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~ 449 (622)
...++.|.+|+... .+..+........+.++++ ++|++.++.. .+.|..++..+++
T Consensus 242 ~~~~~~i~~~d~~g-----------~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~--~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 242 EWGANKIGRLTSNN-----------IIEEYPIQIKSAEPHGICF-DGETIWFAME--CDKIGKLTLIKDN 297 (299)
T ss_dssp ETTTTEEEEEETTT-----------EEEEEECSSSSCCEEEEEE-CSSCEEEEET--TTEEEEEEEC---
T ss_pred ccCCceEEEECCCC-----------ceEEEeCCCCCCccceEEe-cCCCEEEEec--CCcEEEEEcCccc
Confidence 55778999998741 1222221112234567788 8888776654 4567777766543
No 195
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=1.3e-14 Score=138.99 Aligned_cols=233 Identities=11% Similarity=0.060 Sum_probs=168.0
Q ss_pred ceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110 196 LAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274 (622)
Q Consensus 196 ~v~~~~~s~~g~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 274 (622)
...+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++++|+++++...++.|.+||..+++.....
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~ 106 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA 106 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe
Confidence 467899999998 7778888999999999877 5666667788999999999998777766789999999888865543
Q ss_pred eC-----CCCeEEEEEeCCCCeEEEE----ee-------------CCCcEEEEEecCCceeecccCCCCceEEEEEeeCC
Q psy2110 275 RF-----PSPILKVQFHPRNDHMFLV----CP-------------MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG 332 (622)
Q Consensus 275 ~~-----~~~v~~~~~~~~~~~~~~~----~~-------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (622)
.. ...+..++++|+|. ++++ +. ..+.+..++.. .....+..+......++|+|+|
T Consensus 107 ~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~~~~gi~~s~dg 183 (296)
T 3e5z_A 107 DSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRVKPNGLAFLPSG 183 (296)
T ss_dssp CEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCSSEEEEEECTTS
T ss_pred eccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCCCCCccEEECCCC
Confidence 31 23466799999987 4554 22 12345555544 3333444555667889999999
Q ss_pred CEEEEEecCCeEEEEeCC-CccE---EEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCccee
Q psy2110 333 QHVVTGNSKGKVLVLSCP-ALEL---KASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK 408 (622)
Q Consensus 333 ~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 408 (622)
+.+++.+.++.|.+|++. +++. ...+..+...+.+++++++|+++++. ++.|.+|+... ..+..
T Consensus 184 ~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g----------~~~~~ 251 (296)
T 3e5z_A 184 NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG----------DELGR 251 (296)
T ss_dssp CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS----------CEEEE
T ss_pred CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC----------CEEEE
Confidence 999777778999999986 5554 33333345567789999999866555 78899998752 23334
Q ss_pred eeccccceeeeeEEE-cCCCCeEEEeeCCCCeEEEEECCCCee
Q psy2110 409 LQDLVNKTMWKKCCF-SGDGEYVCAGSARQHALYIWEKSVGNL 450 (622)
Q Consensus 409 ~~~~~~~~~~~~~~~-spdg~~l~~~~~~d~~i~iwd~~~~~~ 450 (622)
+..... +.+++| +|+++.|++++. + .++-++..+.++
T Consensus 252 ~~~~~~---~~~~~f~~~d~~~L~v~t~-~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 252 VLTPQT---TSNLCFGGPEGRTLYMTVS-T-EFWSIETNVRGL 289 (296)
T ss_dssp EECSSC---CCEEEEESTTSCEEEEEET-T-EEEEEECSCCBC
T ss_pred EECCCC---ceeEEEECCCCCEEEEEcC-C-eEEEEEcccccc
Confidence 433222 567889 689999988885 4 577777776654
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.69 E-value=1.7e-14 Score=135.77 Aligned_cols=214 Identities=13% Similarity=0.086 Sum_probs=166.1
Q ss_pred CCCEEEEecCCCCeEEEEEcCCCceEEEEeccC-cceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEec
Q psy2110 92 DGEYVCAGSARQHALYIWEKSVGNLVKILHGTK-GELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF 170 (622)
Q Consensus 92 ~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 170 (622)
.++.|++++.+ +.|.+||.++|+.+..+..+. ..+ +++.++|+|++|++ .++.|..||.
T Consensus 4 ~~~~lv~~~~~-~~v~~~d~~tG~~~w~~~~~~~~~~-----------------~~~~~~pdG~ilvs--~~~~V~~~d~ 63 (276)
T 3no2_A 4 PQHLLVGGSGW-NKIAIINKDTKEIVWEYPLEKGWEC-----------------NSVAATKAGEILFS--YSKGAKMITR 63 (276)
T ss_dssp CCEEEEECTTC-SEEEEEETTTTEEEEEEECCTTCCC-----------------CEEEECTTSCEEEE--CBSEEEEECT
T ss_pred CCcEEEeeCCC-CEEEEEECCCCeEEEEeCCCccCCC-----------------cCeEECCCCCEEEe--CCCCEEEECC
Confidence 45778888865 999999999999999998876 233 58999999998883 4678999998
Q ss_pred CCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-CCeEEEEEcCCCceEEEec------cCCcCeeEEE
Q psy2110 171 LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-DGRIVLWDFLTRGIAKIIS------AHMHPVCSIS 243 (622)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~ 243 (622)
+|+.+..+..... ..+.++.+.++|+++++.+. ++.+..++. +++.+..+. .+......++
T Consensus 64 -~G~~~W~~~~~~~----------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 64 -DGRELWNIAAPAG----------CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp -TSCEEEEEECCTT----------CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred -CCCEEEEEcCCCC----------ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence 7887777765321 13678899999999999887 777877775 677766654 2223456678
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC----
Q psy2110 244 WSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED---- 319 (622)
Q Consensus 244 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---- 319 (622)
+.++|+++++...++.|..||.. |+.+..+.....+.++...+++. +++++..++.+..+|..+++.+..+...
T Consensus 132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~ 209 (276)
T 3no2_A 132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVNANDIEG 209 (276)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEEGGGSBS
T ss_pred ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC
Confidence 89999999999999999999988 99999998766777888888876 5666777778999999888777666432
Q ss_pred --CCceEEEEEeeCCCEEEEEe
Q psy2110 320 --SDLSIVASFDRRGQHVVTGN 339 (622)
Q Consensus 320 --~~~~~~~~~~~~~~~l~~~~ 339 (622)
...+..++..++|..+++..
T Consensus 210 ~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 210 VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CCCSEEEEEEECTTSCEEEEEE
T ss_pred ccccccccceEcCCCCEEEEec
Confidence 12356777888888877763
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=4.1e-15 Score=160.36 Aligned_cols=275 Identities=8% Similarity=-0.015 Sum_probs=176.9
Q ss_pred CCCCCEEEEEeCCC---e--EEEEEcCCCceEEEec------cCCcCeeEEEEcCCCCEEEEE-----eCCCcEEEEECC
Q psy2110 203 NKRGTLLAVGCNDG---R--IVLWDFLTRGIAKIIS------AHMHPVCSISWSRNGYKIISA-----STDNNVCIWDVL 266 (622)
Q Consensus 203 s~~g~~l~~~~~dg---~--i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s~-----~~d~~i~iwd~~ 266 (622)
+|+|++++....++ . |.+.+...+.....+. +|...+.+++|||||++|+.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47899888776543 2 3444444444333332 355578999999999999844 334689999999
Q ss_pred CCcEE-EEEeCCCCeEEEEEeCCCCeEEEEeeCC------------CcEEEEEecCCc----eeecccCCCCceEEEEEe
Q psy2110 267 TGECE-QKYRFPSPILKVQFHPRNDHMFLVCPMR------------HAAVLVDTDGDH----QIVPIDEDSDLSIVASFD 329 (622)
Q Consensus 267 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~------------~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~ 329 (622)
+++.+ ...........++|+||++.++++.... ..|++|++.++. .+.....+...+..+.|+
T Consensus 156 tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S 235 (695)
T 2bkl_A 156 SGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS 235 (695)
T ss_dssp TCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred CCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence 99864 1111112226899999999766655432 239999998765 333334455678899999
Q ss_pred eCCCEEEEEecCC----eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEecccccccCCCC
Q psy2110 330 RRGQHVVTGNSKG----KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG----DRLIRVYNHQEVLNAGKDG 401 (622)
Q Consensus 330 ~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~ 401 (622)
|+|++|+..+.++ .|++++..+++. ..+..+...+....+ ++|. |+..+. ++.|.+|++...
T Consensus 236 pDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~------- 305 (695)
T 2bkl_A 236 RDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP------- 305 (695)
T ss_dssp TTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC-------
T ss_pred CCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC-------
Confidence 9999998877665 778887666554 344455555666666 5666 555443 578999998731
Q ss_pred CCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC-CCeeEEEEecCCCCceeEEEECCCCCEEEEEe--
Q psy2110 402 DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS-VGNLVKILHGTKGELLLDVVWHPVRPIIASIS-- 478 (622)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-- 478 (622)
.......+........+..++|+ ++.++++... ++..+||.+. +++....+..+....+..++++|+++.|+...
T Consensus 306 ~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss 383 (695)
T 2bkl_A 306 ARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK-DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS 383 (695)
T ss_dssp SGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE-TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred CccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence 11112333222223345567777 6666666665 7777776544 46666667666333488899999998665332
Q ss_pred ---CCcEEEeecCC
Q psy2110 479 ---SGVVSLWAQNQ 489 (622)
Q Consensus 479 ---dg~v~iw~~~~ 489 (622)
.++|++|++.+
T Consensus 384 ~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 384 FTTPRQIYKTSVST 397 (695)
T ss_dssp TTEEEEEEEEETTT
T ss_pred CCCCCEEEEEECCC
Confidence 37899999864
No 198
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.67 E-value=3.7e-14 Score=139.87 Aligned_cols=276 Identities=15% Similarity=0.128 Sum_probs=195.1
Q ss_pred CCCCEEEEeeCC-----CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe----------CC
Q psy2110 151 KRGTLLAVGCND-----GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC----------ND 215 (622)
Q Consensus 151 ~d~~~l~s~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----------~d 215 (622)
++++.++++... +.|.++|..+++.+..+..... . .++++|||++|+++. .+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~------------P-gia~SpDgk~lyVan~~~~~~~~G~~~ 148 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL------------P-HPVAAEDGSFFAQASTVFERIARGKRT 148 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS------------C-EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC------------C-ceEECCCCCEEEEEeccccccccCCCC
Confidence 567766666542 6999999999988877765431 2 789999999888876 36
Q ss_pred CeEEEEEcCCCceEEEeccC-------CcCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEEeCCCCeEEEEEe
Q psy2110 216 GRIVLWDFLTRGIAKIISAH-------MHPVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQKYRFPSPILKVQFH 286 (622)
Q Consensus 216 g~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 286 (622)
+.|.++|..+++.+..+.-. ......+.++|||++++.+.. ++.|.+.|+.+++.+..+..... ....
T Consensus 149 ~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~ 225 (426)
T 3c75_H 149 DYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIF 225 (426)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEE
T ss_pred CEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeec
Confidence 78999999999988777521 134567899999999999874 57899999999999998886442 3445
Q ss_pred CCCCeEEEEeeCCCcEEEEEecCCceee----cccCCCCc-eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEE--EEEe
Q psy2110 287 PRNDHMFLVCPMRHAAVLVDTDGDHQIV----PIDEDSDL-SIVASFDRRGQHVVTGNSKGKVLVLSCPALELK--ASFK 359 (622)
Q Consensus 287 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~ 359 (622)
|++...+++.+.++.+.+.+....+... .+...... ...+.+++++..++..+..+.+.+.|....... ..+.
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~ 305 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIE 305 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEE
T ss_pred cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeee
Confidence 6555566667777877777774433321 11111111 123567899888887788899999998655422 1111
Q ss_pred c----------CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccccCCCCCCCcceeeeccccceeee
Q psy2110 360 A----------STTAIKSIEFARRGNCLLVNTG----------DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWK 419 (622)
Q Consensus 360 ~----------~~~~i~~~~~s~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (622)
. .......++++|+++++++... ++.|.++|.. ..+.+..+... ....
T Consensus 306 ~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~---------T~kvv~~I~vg---~~P~ 373 (426)
T 3c75_H 306 ALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE---------TGERINKIELG---HEID 373 (426)
T ss_dssp SSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT---------TCCEEEEEEEE---EEEC
T ss_pred eccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC---------CCeEEEEEECC---CCcC
Confidence 0 0111223689999988777642 3579999988 34455555322 2346
Q ss_pred eEEEcCCCC-eEEEeeCCCCeEEEEECCCCeeEEEE
Q psy2110 420 KCCFSGDGE-YVCAGSARQHALYIWEKSVGNLVKIL 454 (622)
Q Consensus 420 ~~~~spdg~-~l~~~~~~d~~i~iwd~~~~~~~~~~ 454 (622)
.+.|+|||+ ++++....++.|.++|+.+++.++.+
T Consensus 374 gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 374 SINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred eEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 789999999 88888755899999999999999887
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=2.4e-14 Score=135.22 Aligned_cols=236 Identities=11% Similarity=0.058 Sum_probs=167.3
Q ss_pred eEEEEcCCCCEEE-EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110 145 VTCAFNKRGTLLA-VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF 223 (622)
Q Consensus 145 ~~~~~s~d~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~ 223 (622)
.+++++++|++++ +.+.++.|.+|+..++......... ...+.+++++++|+++++.. ++.|.+|+.
T Consensus 27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~ 94 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-----------LYQPQGLAVDGAGTVYVTDF-NNRVVTLAA 94 (270)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCS-----------CCSCCCEEECTTCCEEEEET-TTEEEEECT
T ss_pred cceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCC-----------cCCcceeEECCCCCEEEEcC-CCEEEEEeC
Confidence 5999999999777 5467889999987654322111111 02356789999999666655 889999998
Q ss_pred CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110 224 LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAA 302 (622)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i 302 (622)
...............+.+++++++|+.+++...++.|.+|+..+........ ....+..+++++++. ++++...++.+
T Consensus 95 ~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i 173 (270)
T 1rwi_B 95 GSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRV 173 (270)
T ss_dssp TCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEE
T ss_pred CCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEECCCCEE
Confidence 7654432222333578999999999877777777899999866554433222 224678899999886 67777778899
Q ss_pred EEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC
Q psy2110 303 VLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG 382 (622)
Q Consensus 303 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 382 (622)
.+|+...................++++++|..+++...++.|.+|+............+...+.+++++++|+.+++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence 99998776554433333366788999999987777777889999998765443322233357899999999998788888
Q ss_pred CCcEEEEeccc
Q psy2110 383 DRLIRVYNHQE 393 (622)
Q Consensus 383 d~~i~i~d~~~ 393 (622)
++.|++|++..
T Consensus 254 ~~~v~~~~~~~ 264 (270)
T 1rwi_B 254 NDRVVKLTSLE 264 (270)
T ss_dssp GTEEEEECCCG
T ss_pred CCEEEEEcCCC
Confidence 99999999874
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.66 E-value=3.2e-14 Score=134.34 Aligned_cols=239 Identities=10% Similarity=0.013 Sum_probs=165.3
Q ss_pred ceEEEEECCCCCEEE-EEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110 196 LAVTCAFNKRGTLLA-VGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274 (622)
Q Consensus 196 ~v~~~~~s~~g~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 274 (622)
...+++++++|++++ +...++.|.+|+..+.........+...+.+++++++|+.+++.. ++.|.+||..+.... .+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 467899999999776 446788999998765543322223345688999999998655555 889999998765543 23
Q ss_pred e--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc
Q psy2110 275 R--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL 352 (622)
Q Consensus 275 ~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 352 (622)
. ....+..+++.+++. ++++...++.+.+|+..+................++++++|+++++...++.|.+|+....
T Consensus 103 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred ecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 2 225688999999886 6666667788999876554433322233345678999999997777777889999998876
Q ss_pred cEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE
Q psy2110 353 ELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA 432 (622)
Q Consensus 353 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 432 (622)
........+...+.+++++++|..+++...++.|.+|+.... ...... .........++++++|+++++
T Consensus 182 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~----------~~~~~~-~~~~~~p~~i~~~~~g~l~v~ 250 (270)
T 1rwi_B 182 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST----------TSTVLP-FTGLNTPLAVAVDSDRTVYVA 250 (270)
T ss_dssp CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS----------CCEECC-CCSCSCEEEEEECTTCCEEEE
T ss_pred ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC----------cceeec-cCCCCCceeEEECCCCCEEEE
Confidence 655433344467899999999977777667889999998631 111111 111133467899999986666
Q ss_pred eeCCCCeEEEEECCCCe
Q psy2110 433 GSARQHALYIWEKSVGN 449 (622)
Q Consensus 433 ~~~~d~~i~iwd~~~~~ 449 (622)
... ++.|+++++...+
T Consensus 251 ~~~-~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 251 DRG-NDRVVKLTSLEHH 266 (270)
T ss_dssp EGG-GTEEEEECCCGGG
T ss_pred ECC-CCEEEEEcCCCcc
Confidence 665 8899999987654
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.65 E-value=5.9e-14 Score=138.44 Aligned_cols=275 Identities=11% Similarity=0.057 Sum_probs=194.7
Q ss_pred CCCCEEEEEeCC-----CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe----------CCCcEEEEECCCC
Q psy2110 204 KRGTLLAVGCND-----GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS----------TDNNVCIWDVLTG 268 (622)
Q Consensus 204 ~~g~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~ 268 (622)
++++.+++.... +.|.++|..+++.+..+.....+ .++++|||++|+.+. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 567777666543 69999999999999988866566 899999999888876 3678999999999
Q ss_pred cEEEEEeCC--------CCeEEEEEeCCCCeEEEEeeC-CCcEEEEEecCCceeecccCCCCceEEEEEeeCC-CEEEEE
Q psy2110 269 ECEQKYRFP--------SPILKVQFHPRNDHMFLVCPM-RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG-QHVVTG 338 (622)
Q Consensus 269 ~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 338 (622)
+.+..+... .....+.++|++++++++... ++.+.++|+.+.+.+..+..... ....|++ +.+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence 999888643 345678999999987777654 68899999999887776654321 2233433 566667
Q ss_pred ecCCeEEEEeCCCccEEEEE----ecCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec--
Q psy2110 339 NSKGKVLVLSCPALELKASF----KASTTAI-KSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD-- 411 (622)
Q Consensus 339 ~~dg~i~i~d~~~~~~~~~~----~~~~~~i-~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-- 411 (622)
+.||.+.+.+..+++..... .....++ ..+.+.+++..++..+..+.|.+.|+..... ..+..+..
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-------~v~~~~~~~~ 308 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-------TFRAPIEALT 308 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-------EECCCEESSC
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-------EEeeeeeecc
Confidence 77888888887666554321 1111111 2356899999888888889999999863110 00111100
Q ss_pred ----c--ccceeeeeEEEcCCCCeEEEeeC---------CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-EEE
Q psy2110 412 ----L--VNKTMWKKCCFSGDGEYVCAGSA---------RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-IIA 475 (622)
Q Consensus 412 ----~--~~~~~~~~~~~spdg~~l~~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~ 475 (622)
. ........++++|+++.+++... ..+.|.++|..+.+.++.+..... ...++|+|+++ +++
T Consensus 309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~--P~gia~spDg~~~ly 386 (426)
T 3c75_H 309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE--IDSINVSQDAEPLLY 386 (426)
T ss_dssp TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE--ECEEEECCSSSCEEE
T ss_pred ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC--cCeEEEccCCCEEEE
Confidence 0 00011123689999998777642 134799999999999999875442 88999999999 888
Q ss_pred EEe--CCcEEEeecCCcccc
Q psy2110 476 SIS--SGVVSLWAQNQVENW 493 (622)
Q Consensus 476 s~~--dg~v~iw~~~~~~~~ 493 (622)
++. ++.|.++|+.+....
T Consensus 387 v~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 387 ALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEETTTTEEEEEETTTCCEE
T ss_pred EEcCCCCeEEEEECCCCCEE
Confidence 776 799999999765433
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.64 E-value=2.4e-13 Score=131.42 Aligned_cols=238 Identities=13% Similarity=0.125 Sum_probs=170.7
Q ss_pred eEEEEcCCCCEEEE-------eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC-CCEEEEEeCCC
Q psy2110 145 VTCAFNKRGTLLAV-------GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGCNDG 216 (622)
Q Consensus 145 ~~~~~s~d~~~l~s-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg 216 (622)
.+++|++++.++++ +..++.|.+|+..+++........ ..+ ....+..++++++ |+++++. ..+
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----~~~---~~~~~~~i~~~~~~g~l~v~~-~~~ 92 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE----VNG---YGGIPAGCQCDRDANQLFVAD-MRL 92 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE----ETT---EECCEEEEEECSSSSEEEEEE-TTT
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecc----cCC---CCCCCceEEEecCCCcEEEEE-CCC
Confidence 58999999988887 677899999998777653221100 000 0124788999999 7655544 455
Q ss_pred eEEEEEcCCCceEEE-ecc----CCcCeeEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCcEEEEEeC
Q psy2110 217 RIVLWDFLTRGIAKI-ISA----HMHPVCSISWSRNGYKIISASTD---------------NNVCIWDVLTGECEQKYRF 276 (622)
Q Consensus 217 ~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~ 276 (622)
.|.+|+.. ++.... ... ....+.+++++++|+.+++...+ +.|..|+.. ++.......
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~ 170 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA 170 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC
Confidence 79999987 665433 221 12458899999999877776554 567778766 665554444
Q ss_pred CCCeEEEEEe----CCCCeEEEEeeCCCcEEEEEec-CCc-----eeecccCCC-CceEEEEEeeCCCEEEEEecCCeEE
Q psy2110 277 PSPILKVQFH----PRNDHMFLVCPMRHAAVLVDTD-GDH-----QIVPIDEDS-DLSIVASFDRRGQHVVTGNSKGKVL 345 (622)
Q Consensus 277 ~~~v~~~~~~----~~~~~~~~~~~~~~~i~~~d~~-~~~-----~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~ 345 (622)
......++++ |+++.++++...++.+.+|+.. .+. ....+..+. .....++++++|+++++...++.|.
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 4557889999 9988777777778999999986 332 222333333 5677899999999888887888999
Q ss_pred EEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecc
Q psy2110 346 VLSCPALELKASFKASTTAIKSIEFARRGNCLLVN-TGDRLIRVYNHQ 392 (622)
Q Consensus 346 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~i~d~~ 392 (622)
+||..+++.+..+..+...+.+++|+++++.|+++ ..++.|..|++.
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 99998788777777777889999999999966555 456789999886
No 203
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=1.4e-13 Score=129.52 Aligned_cols=213 Identities=11% Similarity=0.071 Sum_probs=168.5
Q ss_pred CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110 152 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI 231 (622)
Q Consensus 152 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~ 231 (622)
.+++|++++.++.|.+||.++|+.+..+..+.. ..+.+++++|+|++++ +.++.|+.||. +++.+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~----------~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~ 70 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG----------WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN 70 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT----------CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc----------CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE
Confidence 467899999999999999999998887765431 1256789999999888 34778999998 8999988
Q ss_pred eccCC-cCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEEeCC-------CCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110 232 ISAHM-HPVCSISWSRNGYKIISAST-DNNVCIWDVLTGECEQKYRFP-------SPILKVQFHPRNDHMFLVCPMRHAA 302 (622)
Q Consensus 232 ~~~~~-~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~i 302 (622)
+..+. ..+.++.+.++|+.+++.+. ++.|..+|. +|+.+..+... .....+.+.+++. ++++...++.+
T Consensus 71 ~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v 148 (276)
T 3no2_A 71 IAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEV 148 (276)
T ss_dssp EECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEE
T ss_pred EcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEE
Confidence 88653 57889999999999999887 778888885 68877776522 1344567788887 56777889999
Q ss_pred EEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC------CCEEEEEEcCCCCE
Q psy2110 303 VLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST------TAIKSIEFARRGNC 376 (622)
Q Consensus 303 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~i~~~~~s~~~~~ 376 (622)
..||.. ++.+..+... .....+...++|+.++++..++.|..+|..+++.+.++..+. ..+.+++..++|..
T Consensus 149 ~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 149 REIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp EEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred EEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 999988 7777766654 334567788999999999888899999999999999887432 23788888999998
Q ss_pred EEEEe
Q psy2110 377 LLVNT 381 (622)
Q Consensus 377 l~~~~ 381 (622)
+++..
T Consensus 227 ~v~~~ 231 (276)
T 3no2_A 227 YICNW 231 (276)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 77764
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.64 E-value=3.1e-12 Score=122.63 Aligned_cols=272 Identities=10% Similarity=0.036 Sum_probs=187.4
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL 224 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~ 224 (622)
.++++.++|++.++...++.|.+|+.. ++... +..... ...+..+++.++|+++++...++.|..||..
T Consensus 23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~---------~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTP---------DAKVMCLIVSSLGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSST---------TCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred ceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCC---------CCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 699999999988877778999999987 54332 211110 1347889999999988777667889999987
Q ss_pred CCceEE-EeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-Ee-CCCCeEEEEEeCCCCeEEEEeeCCCc
Q psy2110 225 TRGIAK-IISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK-YR-FPSPILKVQFHPRNDHMFLVCPMRHA 301 (622)
Q Consensus 225 ~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~~~~~~ 301 (622)
++... .+......+.++++.++|+.+++...++.|..+|.. ++.... +. ....+..+++.+++. ++++...++.
T Consensus 92 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~ 168 (300)
T 2qc5_A 92 -GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNS 168 (300)
T ss_dssp -SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTE
T ss_pred -CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCe
Confidence 55432 222244678999999999877777667899999987 655432 22 345788999999887 6666666788
Q ss_pred EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEE-EecCCCCEEEEEEcCCCCEEEEE
Q psy2110 302 AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKAS-FKASTTAIKSIEFARRGNCLLVN 380 (622)
Q Consensus 302 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~ 380 (622)
+..++................+..++++++|..+++....+.|.+|+. +++.... +..+...+.+++++++|+.+++.
T Consensus 169 i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 169 IGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp EEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 999988433222223334456788999999988777767788999998 5554432 33345678999999999866666
Q ss_pred eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110 381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEK 445 (622)
Q Consensus 381 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~ 445 (622)
..++.|..|+... .+..+..........+++++++|++.++.. . .|..++.
T Consensus 248 ~~~~~i~~~~~~g-----------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~--~-~i~~~~p 298 (300)
T 2qc5_A 248 WGANQIGRITNDN-----------TIQEYQLQTENAEPHGITFGKDGSVWFALK--C-KIGKLNL 298 (300)
T ss_dssp TTTTEEEEECTTS-----------CEEEEECCSTTCCCCCEEECTTSCEEEECS--S-EEEEEEE
T ss_pred cCCCeEEEECCCC-----------cEEEEECCccCCccceeEeCCCCCEEEEcc--C-ceEEeCC
Confidence 5678899998742 112222111223346789999998555443 4 6777664
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=4.3e-12 Score=121.64 Aligned_cols=272 Identities=10% Similarity=0.018 Sum_probs=186.7
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE-EeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110 196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK-IISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274 (622)
Q Consensus 196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 274 (622)
.+.++++.++|++.++...++.|.+|+.. ++... .+..+...+.++++.++|+.+++...++.|..||.. ++.. .+
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~ 97 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY 97 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee
Confidence 46889999999988877778999999987 55433 223334678999999999877776667889999988 6553 33
Q ss_pred e---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110 275 R---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA 351 (622)
Q Consensus 275 ~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 351 (622)
. ....+..+++.+++. ++++...++.+..++...................++++++|+.+++...++.|..++. +
T Consensus 98 ~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred cCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 3 236788999999876 5666666778888888733222233334566788999999997776666788999998 5
Q ss_pred ccEEEE-EecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeE
Q psy2110 352 LELKAS-FKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYV 430 (622)
Q Consensus 352 ~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 430 (622)
++.... ...+...+.+++++++|+.+++....+.|.+|+... ....+...........++++++|++.
T Consensus 176 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-----------~~~~~~~~~~~~~~~~i~~d~~g~l~ 244 (300)
T 2qc5_A 176 GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-----------EISEYDIPTPNARPHAITAGKNSEIW 244 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-----------CEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-----------cEEEEECCCCCCCceEEEECCCCCEE
Confidence 554432 223445788999999998666666677899998741 11112111122344678999999866
Q ss_pred EEeeCCCCeEEEEECCCCeeEEE-EecCCCCceeEEEECCCCCEEEEEeCCcEEEeec
Q psy2110 431 CAGSARQHALYIWEKSVGNLVKI-LHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQ 487 (622)
Q Consensus 431 ~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~ 487 (622)
++... ++.|..|+. +++.... +...... +.++++.++|.+.++... .|..+++
T Consensus 245 v~~~~-~~~i~~~~~-~g~~~~~~~~~~~~~-~~~i~~~~~g~l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 245 FTEWG-ANQIGRITN-DNTIQEYQLQTENAE-PHGITFGKDGSVWFALKC-KIGKLNL 298 (300)
T ss_dssp EEETT-TTEEEEECT-TSCEEEEECCSTTCC-CCCEEECTTSCEEEECSS-EEEEEEE
T ss_pred EeccC-CCeEEEECC-CCcEEEEECCccCCc-cceeEeCCCCCEEEEccC-ceEEeCC
Confidence 55543 688999998 4554322 2222333 889999999986665443 5555554
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.63 E-value=3.3e-14 Score=154.39 Aligned_cols=234 Identities=12% Similarity=0.012 Sum_probs=159.9
Q ss_pred eEEEEcCCCCEEEEeeCC-----CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe--
Q psy2110 145 VTCAFNKRGTLLAVGCND-----GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR-- 217 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-- 217 (622)
..++|||||++||.++.+ ..|++||+.+++.+.... .. ..+..++|+|| +.|+.++.++.
T Consensus 166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~-----------~~~~~~~wspD-~~l~~~~~~~~~~ 232 (741)
T 1yr2_A 166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KW-----------VKFSGLAWLGN-DALLYSRFAEPKE 232 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EE-----------EESCCCEESTT-SEEEEEECCCC--
T ss_pred EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CC-----------ceeccEEEECC-CEEEEEEecCccc
Confidence 589999999999887654 469999999987643211 10 01246799999 98988876553
Q ss_pred ------------EEEEEcCCCce--EEEec--cCCcCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCCC--c-EEEE
Q psy2110 218 ------------IVLWDFLTRGI--AKIIS--AHMHPVCSISWSRNGYKIISASTDN-----NVCIWDVLTG--E-CEQK 273 (622)
Q Consensus 218 ------------i~iwd~~~~~~--~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~--~-~~~~ 273 (622)
|++|++.++.. ...+. .+...+.++.|||||++|+..+.++ .|++||+.++ + ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 312 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL 312 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence 88999877652 22222 3334588999999999998877543 7999999887 4 3444
Q ss_pred EeCCCCeEEEEEeCCCCeEEEEeeC---CCcEEEEEecCC--ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEe
Q psy2110 274 YRFPSPILKVQFHPRNDHMFLVCPM---RHAAVLVDTDGD--HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS 348 (622)
Q Consensus 274 ~~~~~~v~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 348 (622)
......+... ++|+++.+++.+.. +..+.+|++.+. .....+..+...+..+.++ ++.++++...++..++|.
T Consensus 313 ~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 313 IPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred cCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 4444444444 35888877776643 446899998774 2233334444455566776 566778888888766665
Q ss_pred CC-CccEEEEEec-CCCCEEEEEEcCCCCEEEEEe----CCCcEEEEeccc
Q psy2110 349 CP-ALELKASFKA-STTAIKSIEFARRGNCLLVNT----GDRLIRVYNHQE 393 (622)
Q Consensus 349 ~~-~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~----~d~~i~i~d~~~ 393 (622)
+. +++....+.. ....+..+.++|+++.|+... ..+.|++||+.+
T Consensus 391 ~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 391 FDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 43 4566666664 356788999999988666442 247899999874
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.60 E-value=1.4e-13 Score=149.55 Aligned_cols=274 Identities=12% Similarity=0.002 Sum_probs=173.2
Q ss_pred CCCCCEEEEEeCCCe---EEEEEcC-----CCceEEEe------ccCCcCeeEEEEcCCCCEEEEEeCC-----CcEEEE
Q psy2110 203 NKRGTLLAVGCNDGR---IVLWDFL-----TRGIAKII------SAHMHPVCSISWSRNGYKIISASTD-----NNVCIW 263 (622)
Q Consensus 203 s~~g~~l~~~~~dg~---i~iwd~~-----~~~~~~~~------~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~iw 263 (622)
+|+|++++....++. -.+|... .+.....+ .+|...+..++|||||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489998887665432 4555443 33332222 2233468899999999999887654 359999
Q ss_pred ECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC-------------cEEEEEecCCc----eeecccCCCCceEEE
Q psy2110 264 DVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH-------------AAVLVDTDGDH----QIVPIDEDSDLSIVA 326 (622)
Q Consensus 264 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------------~i~~~d~~~~~----~~~~~~~~~~~~~~~ 326 (622)
|+.+++.+........+..++|+|| +.++++..... .+++|++.+.. .+.....+...+..+
T Consensus 195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9999987654322222357899999 87776654332 48889987654 222223333457889
Q ss_pred EEeeCCCEEEEEecCC-----eEEEEeCCCc--cEEEEEecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeccccc
Q psy2110 327 SFDRRGQHVVTGNSKG-----KVLVLSCPAL--ELKASFKASTTAIKSIEFARRGNCLLVNTGD----RLIRVYNHQEVL 395 (622)
Q Consensus 327 ~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----~~i~i~d~~~~~ 395 (622)
.|+|||++|+..+.++ .|++||+.++ +....+..+...+.... +|+|+.|++.+.+ +.|.+|++...
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~- 351 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS- 351 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS-
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC-
Confidence 9999999998877543 8999999876 31445555555555553 4899988888763 45999998731
Q ss_pred ccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC-CCeeEEEEecCCCCceeEEEECCCCCEE
Q psy2110 396 NAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS-VGNLVKILHGTKGELLLDVVWHPVRPII 474 (622)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l 474 (622)
. .....+.... ...+..++|+ ++.++++... ++..+||.+. +++....+..+....+..++++|+++.|
T Consensus 352 ------~-~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l 421 (741)
T 1yr2_A 352 ------T-PRFDTVVPES-KDNLESVGIA-GNRLFASYIH-DAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHA 421 (741)
T ss_dssp ------S-CEEEEEECCC-SSEEEEEEEE-BTEEEEEEEE-TTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCE
T ss_pred ------c-cccEEEecCC-CCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEE
Confidence 0 1122222111 1224456666 4555555554 7766665443 4666677765433348899999998855
Q ss_pred EEE-e----CCcEEEeecCC
Q psy2110 475 ASI-S----SGVVSLWAQNQ 489 (622)
Q Consensus 475 ~s~-~----dg~v~iw~~~~ 489 (622)
+.. + .++|++|++.+
T Consensus 422 ~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 422 YLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEEEEETTEEEEEEEEETTT
T ss_pred EEEEcCCCCCCEEEEEECCC
Confidence 532 2 37899999864
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.58 E-value=1.4e-12 Score=130.26 Aligned_cols=234 Identities=11% Similarity=0.036 Sum_probs=169.3
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC--eEE
Q psy2110 142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG--RIV 219 (622)
Q Consensus 142 ~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg--~i~ 219 (622)
..+..++|+++++++++...++.|++||..++.......... ... ++|+++++.|+++..++ .|.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~------------~~~-ia~~~~g~~l~~~d~~~~~~I~ 197 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK------------GGK-PAVTKDKQRVYSIGWEGTHTVY 197 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC------------BCB-CEECTTSSEEEEEBSSTTCEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC------------CCc-eeEecCCCcEEEEecCCCceEE
Confidence 355799999999988877778999999998775554433211 123 79999999998888765 788
Q ss_pred EEEcCCCceEEEe----ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE----EeCC-CC--eEEEEEeCC
Q psy2110 220 LWDFLTRGIAKII----SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK----YRFP-SP--ILKVQFHPR 288 (622)
Q Consensus 220 iwd~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~-~~--v~~~~~~~~ 288 (622)
+++...+.....+ ......+.+++++|++..|+.+..++.|+.||..++..... .... .. ...++|+|+
T Consensus 198 ~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 198 VYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp EEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred EEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCC
Confidence 8988766544444 22456678999999555666677788999999987764332 1111 11 129999998
Q ss_pred CCeEEEEeeCCCcEEEEEecCCceeecccCC---------------CCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCc
Q psy2110 289 NDHMFLVCPMRHAAVLVDTDGDHQIVPIDED---------------SDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPAL 352 (622)
Q Consensus 289 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~ 352 (622)
+..++++....+.|+.|+....... +..+ -.....++++++|+++++-. .++.|+.|++.++
T Consensus 278 ~g~lyv~d~~~~~I~~~~~~g~~~~--~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 278 DSNFYMSDQNLSSVYKITPDGECEW--FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp TTEEEEEETTTTEEEEECTTCCEEE--EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred CCEEEEEeCCCCEEEEEecCCCEEE--EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 7778888888889999987654221 1111 23467899999999888877 8899999998777
Q ss_pred cEEEEEecC---------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy2110 353 ELKASFKAS---------------TTAIKSIEFARRGNCLLVNTGDRLIRVYNH 391 (622)
Q Consensus 353 ~~~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~ 391 (622)
+. ..+.++ -.....++++++|.++++-..++.|+.+++
T Consensus 356 ~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 356 YV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 64 334333 245789999999887777777888888765
No 209
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.57 E-value=3.1e-13 Score=131.17 Aligned_cols=268 Identities=10% Similarity=-0.013 Sum_probs=183.9
Q ss_pred cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe----------CCCeEEEEEcCCCceEEEec
Q psy2110 164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC----------NDGRIVLWDFLTRGIAKIIS 233 (622)
Q Consensus 164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----------~dg~i~iwd~~~~~~~~~~~ 233 (622)
+|.++|..+++.+..+..... . .++++|||++++++. .++.|.+||+.+++.+..+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~------------P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~ 113 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL------------S-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE 113 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT------------C-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCC------------C-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence 788999999988887765532 2 689999999998886 36889999999999998886
Q ss_pred cC-------CcCeeEEEEcCCCCEEEEEeC--CCcEEE--EECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110 234 AH-------MHPVCSISWSRNGYKIISAST--DNNVCI--WDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAA 302 (622)
Q Consensus 234 ~~-------~~~v~~~~~s~~~~~l~s~~~--d~~i~i--wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i 302 (622)
.+ ......++++|||++++++.. ...+.+ +|+.+ +..+..... +.+.|++...+++.+.++.+
T Consensus 114 v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~ 187 (368)
T 1mda_H 114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASL 187 (368)
T ss_dssp ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSC
T ss_pred CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCE
Confidence 43 124568999999999998875 356888 99877 455553332 23457777777777788888
Q ss_pred EEEEecC----Cceee-----cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc--EEEEEecC----------
Q psy2110 303 VLVDTDG----DHQIV-----PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE--LKASFKAS---------- 361 (622)
Q Consensus 303 ~~~d~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~---------- 361 (622)
.+.++.. ...+. .+....... . .+++..++..+. +.+.+.|..+.. .+..+...
T Consensus 188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~ 262 (368)
T 1mda_H 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR 262 (368)
T ss_dssp EEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred EEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc
Confidence 8888876 22221 111122222 3 566666666666 899999986543 22222110
Q ss_pred CCCEEEEEEcCCCCEEEEEeC---------CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE
Q psy2110 362 TTAIKSIEFARRGNCLLVNTG---------DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA 432 (622)
Q Consensus 362 ~~~i~~~~~s~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 432 (622)
......++++|+++.++++.. ++.+.++|+.+ .+.+..+.. ......++|+|||+++++
T Consensus 263 p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t---------~~vv~~i~v---g~~p~gi~~s~Dg~~l~v 330 (368)
T 1mda_H 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV---------GQTSGPISN---GHDSDAIIAAQDGASDNY 330 (368)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS---------CCEEECCEE---EEEECEEEECCSSSCEEE
T ss_pred cCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC---------CeEEEEEEC---CCCcceEEECCCCCEEEE
Confidence 011122689999998887643 23566999883 334444432 223567899999996655
Q ss_pred eeC-CCCeEEEEECCCCeeEEEEecCCCCceeEEEECC
Q psy2110 433 GSA-RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHP 469 (622)
Q Consensus 433 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp 469 (622)
+.. .++.|.++|+.+++.++.+..... ...+++++
T Consensus 331 a~~~~~~~VsVID~~t~kvv~~I~vg~~--P~~i~~~~ 366 (368)
T 1mda_H 331 ANSAGTEVLDIYDAASDQDQSSVELDKG--PESLSVQN 366 (368)
T ss_dssp EEETTTTEEEEEESSSCEEEEECCCCSC--CCEEECCC
T ss_pred EccCCCCeEEEEECCCCcEEEEEECCCC--CCEEEeec
Confidence 554 488999999999999999986654 56777665
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=3.2e-12 Score=123.53 Aligned_cols=242 Identities=13% Similarity=0.100 Sum_probs=164.7
Q ss_pred CCcCeeEEEEcCCCCEEEE-------EeCCCcEEEEECCCCcEEEEEe-----CCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110 235 HMHPVCSISWSRNGYKIIS-------ASTDNNVCIWDVLTGECEQKYR-----FPSPILKVQFHPRNDHMFLVCPMRHAA 302 (622)
Q Consensus 235 ~~~~v~~~~~s~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~i 302 (622)
.-....+++|+++++.+++ ...++.|.+||..+++...... +...+.++++++++..++++.. ...+
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3345689999999987777 4667899999988887654332 3356889999998333444443 4478
Q ss_pred EEEEecCCceeec-ccC----CCCceEEEEEeeCCCEEEEEecC---------------CeEEEEeCCCccEEEEEecCC
Q psy2110 303 VLVDTDGDHQIVP-IDE----DSDLSIVASFDRRGQHVVTGNSK---------------GKVLVLSCPALELKASFKAST 362 (622)
Q Consensus 303 ~~~d~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~ 362 (622)
.+||.. +..... ... ....+..++++++|+++++...+ +.|..|+.. ++..... .+.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCC
Confidence 889987 443222 111 12346789999999888877655 578888876 5544332 333
Q ss_pred CCEEEEEEc----CCCCEEEEE-eCCCcEEEEecccccccCCCCCCCcceeeeccccc--eeeeeEEEcCCCCeEEEeeC
Q psy2110 363 TAIKSIEFA----RRGNCLLVN-TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK--TMWKKCCFSGDGEYVCAGSA 435 (622)
Q Consensus 363 ~~i~~~~~s----~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~ 435 (622)
.....++|+ |+++.|+++ ..++.|.+|++.. .+.......+...... .....++++++|++.++...
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~------~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG------PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE------TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC------CCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 456889999 999766655 4578999999762 0000111111111111 23456899999988877665
Q ss_pred CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe--CCcEEEeecC
Q psy2110 436 RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS--SGVVSLWAQN 488 (622)
Q Consensus 436 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~ 488 (622)
++.|++||..+++.+..+..+... +.+++|+|+++.|+.++ ++.|..|++.
T Consensus 246 -~~~i~~~d~~~g~~~~~~~~~~~~-~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 246 -SSHIEVFGPDGGQPKMRIRCPFEK-PSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp -TTEEEEECTTCBSCSEEEECSSSC-EEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred -CCEEEEEcCCCCcEeEEEeCCCCC-ceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 778999999878877777766554 99999999999665554 6789999875
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.56 E-value=3.2e-12 Score=122.29 Aligned_cols=223 Identities=10% Similarity=0.163 Sum_probs=158.8
Q ss_pred eEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110 145 VTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF 223 (622)
Q Consensus 145 ~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~ 223 (622)
.+..|+|++. ++++...++.|..|+..++... .+... ..+.+++++++|+++++ . ++.|.+||.
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~------------~~~~~i~~~~dG~l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMD------------APVSSVALRQSGGYVAT-I-GTKFCALNW 80 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECS------------SCEEEEEEBTTSSEEEE-E-TTEEEEEET
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCC------------CceEEEEECCCCCEEEE-E-CCeEEEEEC
Confidence 4889999654 5666667889999999876542 22111 24789999999995554 4 568999999
Q ss_pred CCCceEEEecc----CCcCeeEEEEcCCCCEEEEEeCC---------CcEEEEECC-CCcEEEEEeCCCCeEEEEEeCCC
Q psy2110 224 LTRGIAKIISA----HMHPVCSISWSRNGYKIISASTD---------NNVCIWDVL-TGECEQKYRFPSPILKVQFHPRN 289 (622)
Q Consensus 224 ~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d---------~~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~ 289 (622)
.+++....... ....++.++++++|+++++.... ..-.+|.+. .++.............++|+|++
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTS
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCC
Confidence 88765433321 22457899999999966654321 223444443 24444444444556889999999
Q ss_pred CeEEEEeeCCCcEEEEEec--CCc-----eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC
Q psy2110 290 DHMFLVCPMRHAAVLVDTD--GDH-----QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST 362 (622)
Q Consensus 290 ~~~~~~~~~~~~i~~~d~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 362 (622)
+.++++.+..+.|..|++. ++. ....+.........++++++|++.++....+.|..||..+++.+..+..+.
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 9888888888999999984 332 122233334567789999999888887778899999999999999998887
Q ss_pred CCEEEEEEc-CCCCEEEEEeC
Q psy2110 363 TAIKSIEFA-RRGNCLLVNTG 382 (622)
Q Consensus 363 ~~i~~~~~s-~~~~~l~~~~~ 382 (622)
..+++++|. |+++.|++++.
T Consensus 241 ~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 241 DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SBEEEEEEESGGGCEEEEEEB
T ss_pred CCceEEEEeCCCCCEEEEEcC
Confidence 889999998 88887776654
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.53 E-value=1.8e-12 Score=126.73 Aligned_cols=266 Identities=12% Similarity=0.115 Sum_probs=170.7
Q ss_pred ceEEEEECCCCCEEEEEeC--CCeEEEEEcCCCceEEEec-------cCCcCeeEEEEcCCCCEEEEEeC-----CCcEE
Q psy2110 196 LAVTCAFNKRGTLLAVGCN--DGRIVLWDFLTRGIAKIIS-------AHMHPVCSISWSRNGYKIISAST-----DNNVC 261 (622)
Q Consensus 196 ~v~~~~~s~~g~~l~~~~~--dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~-----d~~i~ 261 (622)
.+..++++++|+++++... ++.++||.+.+++. ..+. .|...+.+++++++++++++-.. ++.|.
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 3688999999998888642 34355665555543 3221 34567899999999875555433 47899
Q ss_pred EEECCCCcEEEEEeCC-------CCeEEEEEeCCCCeEEEEee---CCCcEEEEEecCCceeecccCCCCceE-EEEEee
Q psy2110 262 IWDVLTGECEQKYRFP-------SPILKVQFHPRNDHMFLVCP---MRHAAVLVDTDGDHQIVPIDEDSDLSI-VASFDR 330 (622)
Q Consensus 262 iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~ 330 (622)
+||+.+++.+..+..+ ..+..+++++++..++++.. .++.+.+||+.++.....+..|..... ...+..
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence 9999999988777643 24688999987766777766 678999999987765554443321110 133456
Q ss_pred CCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEecccccccCCCCCCCcceee
Q psy2110 331 RGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR-LIRVYNHQEVLNAGKDGDPEPIQKL 409 (622)
Q Consensus 331 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~ 409 (622)
+|..+.+...+|.+..|. ..+..|+|+|+|+.|+++...+ .|+.++...... ...........+
T Consensus 177 ~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 241 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSN-LQLTDAELGSKI 241 (343)
T ss_dssp TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTC-TTCCHHHHHTTC
T ss_pred CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcC-CCCChhhhhcce
Confidence 777777777777765553 2467899999999898887665 455554331110 000000000001
Q ss_pred eccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110 410 QDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS 478 (622)
Q Consensus 410 ~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~ 478 (622)
...........++++++|+++++... ++.|.+||..+|+............+.+++|.+++.++++.+
T Consensus 242 ~~~g~~g~pdgia~d~~G~l~va~~~-~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 242 ERYSEKPICDGISIDKDHNIYVGDLA-HSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEEECCSCSCEEECTTCCEEEEEGG-GTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred EecccCCCCceEEECCCCCEEEEccC-CCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 10001112346899999988877775 889999998667754444433223389999999988777765
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.53 E-value=1.5e-11 Score=122.65 Aligned_cols=237 Identities=8% Similarity=-0.039 Sum_probs=158.9
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC-cEEEEEecCCceeec
Q psy2110 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH-AAVLVDTDGDHQIVP 315 (622)
Q Consensus 237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~ 315 (622)
.....++|+++++.+++...++.|++||..+++............ ++|+|+++.++++....+ .+.+++.........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 467899999999877777677899999999888776665444444 999999986655554443 788888876543222
Q ss_pred c----cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEE----EecCCCCE--EEEEEcCC-CCEEEEEeCCC
Q psy2110 316 I----DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKAS----FKASTTAI--KSIEFARR-GNCLLVNTGDR 384 (622)
Q Consensus 316 ~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~i--~~~~~s~~-~~~l~~~~~d~ 384 (622)
+ .........++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+ +.++++...++
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 2 21345567889999555566677788999999987764322 12222222 39999996 55555556678
Q ss_pred cEEEEecccccccCCCCCCCcceeeeccc-------------cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeE
Q psy2110 385 LIRVYNHQEVLNAGKDGDPEPIQKLQDLV-------------NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV 451 (622)
Q Consensus 385 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~ 451 (622)
.|+.|+.... +..+.+.. .-.....++++|+|+++++-...++.|+.|++.+|+.
T Consensus 290 ~I~~~~~~g~-----------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v- 357 (409)
T 3hrp_A 290 SVYKITPDGE-----------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV- 357 (409)
T ss_dssp EEEEECTTCC-----------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-
T ss_pred EEEEEecCCC-----------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-
Confidence 8999987631 11111110 0012357899999996655550388999999888874
Q ss_pred EEEecC---------------CCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110 452 KILHGT---------------KGELLLDVVWHPVRPIIASIS-SGVVSLWAQ 487 (622)
Q Consensus 452 ~~~~~~---------------~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~ 487 (622)
..+.++ ... +..++++|++.++++-. ++.|+.+++
T Consensus 358 ~~~~g~~~~~g~~~g~~~~~~~~~-P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 STVAGQVDVASQIDGTPLEATFNY-PYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEECTTCBSCCCBSTTTCCBSS-EEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCCCcCCCChhceEeCC-ceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 444443 123 88999999977666665 788887764
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.52 E-value=2.1e-11 Score=118.10 Aligned_cols=220 Identities=11% Similarity=0.005 Sum_probs=155.1
Q ss_pred eEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110 145 VTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF 223 (622)
Q Consensus 145 ~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~ 223 (622)
.+..|+|++. ++++...++.|..|+..+++.. .+... ..+.+++++++|+++++. . ..|.+||.
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~------------~~v~~i~~~~dg~l~v~~-~-~gl~~~d~ 116 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALP------------FMGSALAKISDSKQLIAS-D-DGLFLRDT 116 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECS------------SCEEEEEEEETTEEEEEE-T-TEEEEEET
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECC------------CcceEEEEeCCCeEEEEE-C-CCEEEEEC
Confidence 3788999754 5566667889999998876432 22111 247889999999877654 3 45999998
Q ss_pred CCCceEEEecc----CCcCeeEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEE
Q psy2110 224 LTRGIAKIISA----HMHPVCSISWSRNGYKIISAST------DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMF 293 (622)
Q Consensus 224 ~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 293 (622)
.+++....... ....+..++++++|+++++... .+.|..++ +++.............++|+|+++.++
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 117 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGY 194 (326)
T ss_dssp TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEE
T ss_pred CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEE
Confidence 88775433221 1246889999999987665532 24566666 565544333334577899999999888
Q ss_pred EEeeCCCcEEEEEec--CC-c-----eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCE
Q psy2110 294 LVCPMRHAAVLVDTD--GD-H-----QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAI 365 (622)
Q Consensus 294 ~~~~~~~~i~~~d~~--~~-~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 365 (622)
++...++.|.+|+.. ++ . ....+.........++++++|.++++...++.|.+|+. +++.+..+..+...+
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~ 273 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQT 273 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBE
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCc
Confidence 877778899999985 33 2 12222223455678899999988777767788999998 677788888777789
Q ss_pred EEEEEc-CCCCEEEEEeC
Q psy2110 366 KSIEFA-RRGNCLLVNTG 382 (622)
Q Consensus 366 ~~~~~s-~~~~~l~~~~~ 382 (622)
++++|+ ++++.|++++.
T Consensus 274 ~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 274 TCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEEESTTSCEEEEEEB
T ss_pred EEEEEecCCCCEEEEEec
Confidence 999998 88887766654
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.50 E-value=4e-11 Score=114.61 Aligned_cols=232 Identities=9% Similarity=0.119 Sum_probs=154.5
Q ss_pred cCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce
Q psy2110 234 AHMHPVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ 312 (622)
Q Consensus 234 ~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 312 (622)
.+..-..+..|++++. .+++...++.|..||..+++. ..+.....+.+++++++++ ++++. +..+.+||..++..
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGG-YVATI--GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCC-EEEEE--CCeEEEEECCCCcE
Confidence 3344556889999655 455555678999999988765 4566778899999999998 44433 56899999876643
Q ss_pred eecccC----CCCceEEEEEeeCCCEEEEEec-----------CCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEE
Q psy2110 313 IVPIDE----DSDLSIVASFDRRGQHVVTGNS-----------KGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCL 377 (622)
Q Consensus 313 ~~~~~~----~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 377 (622)
...... ....+..++++++|+++++... .+.|+.++.. ++... +.......+.++|+|+++.|
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEE
Confidence 222111 1234678999999997765432 2345555543 33332 33333456899999999977
Q ss_pred EEE-eCCCcEEEEecccccccCCCCCCCcceeeeccc-cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe
Q psy2110 378 LVN-TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH 455 (622)
Q Consensus 378 ~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~ 455 (622)
+++ +.++.|.+|++... .+.....+.+.... .......++++++|++.++... ++.|.+||..+|+.+..+.
T Consensus 164 yv~~~~~~~i~~~~~d~~-----~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQ-----TGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-GGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp EEEEGGGTEEEEEEECTT-----TCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-TTEEEEECTTTCCEEEEEE
T ss_pred EEecCCCCcEEEEeccCC-----CCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-CCEEEEEcCCCceEEEEEE
Confidence 655 55788999987410 11111111121111 1123457899999987766664 7889999999999999998
Q ss_pred cCCCCceeEEEEC-CCCCEEEEEe
Q psy2110 456 GTKGELLLDVVWH-PVRPIIASIS 478 (622)
Q Consensus 456 ~~~~~~v~~v~~s-p~~~~l~s~~ 478 (622)
.+... +++++|. |+++.|+.++
T Consensus 238 ~p~~~-~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 238 LPVDK-TTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp CSSSB-EEEEEEESGGGCEEEEEE
T ss_pred CCCCC-ceEEEEeCCCCCEEEEEc
Confidence 87655 9999998 8888766554
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.48 E-value=1.2e-11 Score=133.08 Aligned_cols=240 Identities=9% Similarity=0.052 Sum_probs=160.1
Q ss_pred ceeEEEEcCCCCEEEEecCC----CCeEEEEEcCCCceEEE-EeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110 83 MWKKCCFSGDGEYVCAGSAR----QHALYIWEKSVGNLVKI-LHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157 (622)
Q Consensus 83 ~~~~~~~sp~~~~l~~~~~~----~~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 157 (622)
.+..++|||||++||.+... ...|++||+.+|+.+.. +.+. .. ..++|+ |++.|+
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~-----------------~~~~Ws-Dg~~l~ 189 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KF-----------------SGISWL-GNEGFF 189 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ES-----------------CCCEEE-TTTEEE
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--ee-----------------ccEEEe-CCCEEE
Confidence 45578999999999964422 25799999999986543 1111 01 367899 999999
Q ss_pred EeeCCCc-------------EEEEecCCccccc--cccccc-CCCcccccccccceEEEEECCCCCEEEEEeC----CCe
Q psy2110 158 VGCNDGR-------------IVLWDFLTRGIAK--IISAHM-HPEFDGALDCISLAVTCAFNKRGTLLAVGCN----DGR 217 (622)
Q Consensus 158 s~~~dg~-------------i~vw~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----dg~ 217 (622)
.++.+.. |++|++.++.... .+.... .. .....+.|+|||++|+.... ...
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~---------~~~~~~~~SpDg~~l~~~~~~~~~~~~ 260 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH---------HRYVGATVTEDDRFLLISAANSTSGNR 260 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC---------CSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC---------eEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence 8887743 9999988764321 111111 01 23567899999998866543 358
Q ss_pred EEEEEcCCCc-eEEEeccCCcCeeEEEEcCCCCEEEEEeC-C---CcEEEEECCCCcE---EEEEeCCCCeEEEEEeCCC
Q psy2110 218 IVLWDFLTRG-IAKIISAHMHPVCSISWSRNGYKIISAST-D---NNVCIWDVLTGEC---EQKYRFPSPILKVQFHPRN 289 (622)
Q Consensus 218 i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d---~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~ 289 (622)
|+++++.++. ....+..+....... |+++|..|+..+. + +.|..+|+.++.. ...+.+...+. .|++++
T Consensus 261 i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g 337 (693)
T 3iuj_A 261 LYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGS 337 (693)
T ss_dssp EEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEET
T ss_pred EEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEEC
Confidence 9999998764 455666666666555 6677776665544 2 5799999988754 33444555554 899999
Q ss_pred CeEEEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC----CeEEEEeCCCccE
Q psy2110 290 DHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK----GKVLVLSCPALEL 354 (622)
Q Consensus 290 ~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~ 354 (622)
+.+++....++ .+++|++.+.............+..+.++++++.++....+ +.++.||+.+++.
T Consensus 338 ~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 338 GYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 98888777776 57778776543322212233456667778888777665544 7899999987764
No 217
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.48 E-value=1.5e-08 Score=110.88 Aligned_cols=427 Identities=10% Similarity=0.060 Sum_probs=254.1
Q ss_pred CcceEEEEccCCcEEEeccCCCeEEEEeccccceec-----------------ccCceEEeecCCceEEEeechhhhhcC
Q psy2110 2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA-----------------SRGNCLLVNTGDRLIRVYNHQEVLNAG 64 (622)
Q Consensus 2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~-----------------~~~~~l~~~~~d~~i~~w~~~~~~~~~ 64 (622)
..|.++...++|.+.+. +.+| +..||..+.++.. .....+.+++.. -+..|+......
T Consensus 88 n~I~~i~~d~~g~lWig-T~~G-l~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~~-gl~~~~~~~~~~-- 162 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWIG-TRDG-LSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPE-GLIMFDIKESKF-- 162 (795)
T ss_dssp SCEEEEEECTTSCEEEE-ESSC-EEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEETT-EEEEEETTTTEE--
T ss_pred cceeEEEECCCCCEEEE-eCCc-hheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEECC-ceEEEECCCCEE--
Confidence 46889999999976654 4445 7888876543220 112223334443 366676543111
Q ss_pred CCCCCccchhhhhhccccc-eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEe-ccCcceeEEEEeecCcccccc
Q psy2110 65 KDGDPEPIQKLQDLVNKTM-WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH-GTKGELLLDVVEFDGALDCIS 142 (622)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~-~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 142 (622)
..+........ +.++...+++...+ ++.. +.|..|+..+++...... .+...
T Consensus 163 --------~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~-~Gl~~~~~~~~~~~~~~~~~~~~~---------------- 216 (795)
T 4a2l_A 163 --------IDDSFSTAMHKTIASTLYRQGDQIYI-GTST-DGLYTYSITQKTFEKVIPILGTKQ---------------- 216 (795)
T ss_dssp --------ECSSSCHHHHTCCEEEEEEETTEEEE-EESS-SCEEEEETTTCCEEECC----CCC----------------
T ss_pred --------EeccCCCCCCcceEEEEECCCCCEEE-EECC-CCEEEEeCCCCeEEEecCCCCCCe----------------
Confidence 00000000112 56788888887665 4432 468899987766543211 11122
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110 143 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD 222 (622)
Q Consensus 143 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd 222 (622)
|.++...+++.+.+ |+.++-+.+|+..+++..........+ ..+ ....|.++...++|.+.+ |+.+ -|.+|+
T Consensus 217 -i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~---~~l-~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~ 288 (795)
T 4a2l_A 217 -IQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNP---KSI-SSNYIRSLAMDSQNRLWI-GTFN-DLNIYH 288 (795)
T ss_dssp -EEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCT---TSC-SCSBEEEEEECTTSCEEE-EESS-CEEEEE
T ss_pred -eEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCc---ccc-CCCeEEEEEEcCCCCEEE-EeCC-hhheEc
Confidence 35777777776554 444445888998765433221111000 000 113588999999888654 4445 588999
Q ss_pred cCCCceEEEecc-------CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------CCCCeEEEEEeCC
Q psy2110 223 FLTRGIAKIISA-------HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-------FPSPILKVQFHPR 288 (622)
Q Consensus 223 ~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~ 288 (622)
..++........ ....|.++...++|. |..|+.++-|..|+..++....... ....|.++...++
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~ 367 (795)
T 4a2l_A 289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKD 367 (795)
T ss_dssp TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTT
T ss_pred CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCC
Confidence 877654433211 235799999998886 5667777779999876654332211 1345888888887
Q ss_pred CCeEEEEeeCCCcEEEEEecCCceeeccc--------CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-
Q psy2110 289 NDHMFLVCPMRHAAVLVDTDGDHQIVPID--------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK- 359 (622)
Q Consensus 289 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~- 359 (622)
+. +.+|+.++.+..++..+........ .....|.++..+++|+.|.+|+.++-|..||..+++...-..
T Consensus 368 g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~ 445 (795)
T 4a2l_A 368 KN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR 445 (795)
T ss_dssp SC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred CC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence 76 4556777778888877653322111 124568888888888856677776779999988776443221
Q ss_pred ---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec-----cccceeeeeEEEcCCCCeEE
Q psy2110 360 ---ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD-----LVNKTMWKKCCFSGDGEYVC 431 (622)
Q Consensus 360 ---~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~spdg~~l~ 431 (622)
.....|.++...++|+..+ ++. +-|.+|+.... ....+.. ......+.++...++|++.+
T Consensus 446 ~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 446 NSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQR----------SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp TSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTT----------EEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred CCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCC----------eEEEccccccccccCCceEEEEEECCCCCEEE
Confidence 2346799999998888544 444 45888887631 1111111 11224466788888888665
Q ss_pred EeeCCCCeEEEEECCCCeeEEEEec------CCCCceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110 432 AGSARQHALYIWEKSVGNLVKILHG------TKGELLLDVVWHPVRPIIASISSGVVSLWAQN 488 (622)
Q Consensus 432 ~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~ 488 (622)
... +| |+.|+..+++. .+.. -....|.++...++|.+.++... -+..|+..
T Consensus 514 gt~--~G-l~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~ 570 (795)
T 4a2l_A 514 GGE--EG-LSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEK 570 (795)
T ss_dssp EES--SC-EEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred EeC--Cc-eEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCC
Confidence 443 33 88999877765 3321 11223899999999986655444 57777764
No 218
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.47 E-value=2.8e-11 Score=128.78 Aligned_cols=308 Identities=13% Similarity=0.114 Sum_probs=196.1
Q ss_pred CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII 232 (622)
Q Consensus 153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~ 232 (622)
+..|++++.++.|..+|..+|+.+-.+.............+......+++ ++..|++++.++.|..+|..+++.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 45677777788999999999987766654322110000000000011222 3567888889999999999999999887
Q ss_pred ccC-C----cCee-EEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCCCe--------------------
Q psy2110 233 SAH-M----HPVC-SISWSRNGYKIISAST------DNNVCIWDVLTGECEQKYRFPSPI-------------------- 280 (622)
Q Consensus 233 ~~~-~----~~v~-~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v-------------------- 280 (622)
..+ . ..+. .... .+..++.++. ++.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 754 2 1121 1111 2345555543 689999999999998887632111
Q ss_pred -------------EEEEEeCCCCeEEEEeeCC------------------CcEEEEEecCCceeecccCCC---------
Q psy2110 281 -------------LKVQFHPRNDHMFLVCPMR------------------HAAVLVDTDGDHQIVPIDEDS--------- 320 (622)
Q Consensus 281 -------------~~~~~~~~~~~~~~~~~~~------------------~~i~~~d~~~~~~~~~~~~~~--------- 320 (622)
..++++|++..+++..... +.+..+|..+++.+..+....
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 2467888877555443221 248889999888776654321
Q ss_pred CceEEEEEeeCC---CEEEEEecCCeEEEEeCCCccEEEEEecCCC-----------CE---------------------
Q psy2110 321 DLSIVASFDRRG---QHVVTGNSKGKVLVLSCPALELKASFKASTT-----------AI--------------------- 365 (622)
Q Consensus 321 ~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~i--------------------- 365 (622)
.....+....+| ..++.++.+|.++++|..+++++..+..... .+
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 112233344577 6889999999999999999999877653211 11
Q ss_pred ---EEEEEcCCCCEEEEEeCC-------------------------------------------CcEEEEecccccccCC
Q psy2110 366 ---KSIEFARRGNCLLVNTGD-------------------------------------------RLIRVYNHQEVLNAGK 399 (622)
Q Consensus 366 ---~~~~~s~~~~~l~~~~~d-------------------------------------------~~i~i~d~~~~~~~~~ 399 (622)
..++++|++.++++...+ +.|..||+.+
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t------ 466 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA------ 466 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT------
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC------
Confidence 156889998888776532 5677777762
Q ss_pred CCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEE
Q psy2110 400 DGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASI 477 (622)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 477 (622)
.+.+-.+... .......++.++..++.++. ++.+++||..+|+.+..+....+....-+.|.++|+.++..
T Consensus 467 ---G~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~-dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 467 ---QKAAWSVEHV---SPWNGGTLTTAGNVVFQGTA-DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp ---TEEEEEEEES---SSCCCCEEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ---CcEEeecCCC---CCCcCcceEeCCCEEEEECC-CCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 2222222211 11223356678888888876 99999999999999999886554324456777888754443
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.46 E-value=5.2e-12 Score=135.74 Aligned_cols=234 Identities=8% Similarity=0.024 Sum_probs=157.9
Q ss_pred ceeEEEEcCCCCEEEEe-----eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC-
Q psy2110 143 LAVTCAFNKRGTLLAVG-----CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG- 216 (622)
Q Consensus 143 ~v~~~~~s~d~~~l~s~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg- 216 (622)
.+..++|||||++||.+ +....|++||+.+++.+.... .. .....++|+ ||+.|+.++.+.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~-----------~k~~~~~Ws-Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KD-----------VKFSGISWL-GNEGFFYSSYDKP 196 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EE-----------EESCCCEEE-TTTEEEEEESSCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CC-----------ceeccEEEe-CCCEEEEEEecCc
Confidence 34688999999998843 333579999999987543211 00 002456899 999999888774
Q ss_pred ------------eEEEEEcCCCce----EEEecc-CCcCeeEEEEcCCCCEEEEEeC----CCcEEEEECCCC--cEEEE
Q psy2110 217 ------------RIVLWDFLTRGI----AKIISA-HMHPVCSISWSRNGYKIISAST----DNNVCIWDVLTG--ECEQK 273 (622)
Q Consensus 217 ------------~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~s~~~~~l~s~~~----d~~i~iwd~~~~--~~~~~ 273 (622)
.|++|++.++.. +..... |.....++.|+|||++|+.... .+.|+++|+.++ +....
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 399999987653 222233 4455788999999998865443 248999999876 33433
Q ss_pred EeCCCCeEEEEEeCCCCeEEEEeeCC---CcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecCC---eEE
Q psy2110 274 YRFPSPILKVQFHPRNDHMFLVCPMR---HAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSKG---KVL 345 (622)
Q Consensus 274 ~~~~~~v~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~ 345 (622)
.......... +++++..+++.+..+ ..|..+++.+... ...+..+...+. .|++++++|+....++ .|+
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence 3344444444 777788777776554 5788888876543 233444444444 8999999887765543 689
Q ss_pred EEeCCCccEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeccc
Q psy2110 346 VLSCPALELKASFK-ASTTAIKSIEFARRGNCLLVNTGD----RLIRVYNHQE 393 (622)
Q Consensus 346 i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d----~~i~i~d~~~ 393 (622)
+|++..+ ....+. .....+..+.++++++.|+....+ +.|+.||+..
T Consensus 354 ~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 354 QFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred EEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 9998754 444444 344567788888888877766544 7899999863
No 220
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.45 E-value=2.3e-10 Score=113.56 Aligned_cols=304 Identities=9% Similarity=-0.001 Sum_probs=190.2
Q ss_pred CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccce-EEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLA-VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI 231 (622)
Q Consensus 153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~ 231 (622)
+..|++++.++.|..+|..+|+.+-............. ....+ ..+.. ++..+++++.++.|..+|..+++.+..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSK--EPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSC--CCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccc--cCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 56788888889999999999887655543221100000 00111 12222 356788888899999999999998877
Q ss_pred eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeE------EEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110 232 ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPIL------KVQFHPRNDHMFLVCPMRHAAVLV 305 (622)
Q Consensus 232 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~~~~~~~~~~~~~i~~~ 305 (622)
.............. +..++.++.++.|..+|..+++.+..+....++. ..... +. .++++..++.+..+
T Consensus 129 ~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~-~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 129 TKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FG-AAVVGGDNGRVSAV 203 (376)
T ss_dssp EECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TT-EEEECCTTTEEEEE
T ss_pred EeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CC-EEEEEcCCCEEEEE
Confidence 76543322222232 4478888889999999999999888877544332 22222 22 46677788999999
Q ss_pred EecCCceeecccCCCCc----------e-EEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC
Q psy2110 306 DTDGDHQIVPIDEDSDL----------S-IVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG 374 (622)
Q Consensus 306 d~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~ 374 (622)
|..+++.+......... + .... ..+..+++++.++.+..+|..+++.+..... .....+.. ++
T Consensus 204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~ 277 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV--VVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DG 277 (376)
T ss_dssp ETTTCCEEEEEECCC-----------CCCCCCE--EETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ET
T ss_pred ECCCCcEEEEEecccCCCCcccccccccCCCcE--EECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--EC
Confidence 99888766554432110 0 0111 1356778888899999999999998876553 23444444 35
Q ss_pred CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEE
Q psy2110 375 NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL 454 (622)
Q Consensus 375 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~ 454 (622)
..+++++.++.|..+|..+. +.......... ........ .+..|++++. +|.|+++|..+|+.+...
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG---------~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~-~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGG---------VTLWTQSDLLH-RLLTSPVL--YNGNLVVGDS-EGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp TEEEEEETTCCEEEEETTTC---------CEEEEECTTTT-SCCCCCEE--ETTEEEEECT-TSEEEEEETTTCCEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCC---------cEEEeecccCC-CcccCCEE--ECCEEEEEeC-CCeEEEEECCCCcEEEEE
Confidence 67888888999999998732 22222221111 11111222 3567777776 889999999999988877
Q ss_pred ecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110 455 HGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA 486 (622)
Q Consensus 455 ~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~ 486 (622)
..........+... +..|+.++ +|.|+.|+
T Consensus 345 ~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 345 KVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred ecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 65333312222222 44566666 89998886
No 221
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.45 E-value=4.4e-08 Score=107.20 Aligned_cols=436 Identities=10% Similarity=0.105 Sum_probs=255.9
Q ss_pred ceEEEEccCCcEEEeccCCCeEEEEecccccee---------------cccCceEEeecCCceEEEeechhhhhcCCCCC
Q psy2110 4 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGD 68 (622)
Q Consensus 4 V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 68 (622)
|.++...++|++.+ |+.++-|..|+....++. ......+.+++.++-+..|+............
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~ 253 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHS 253 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecC
Confidence 78888888987766 444445778886554322 11123344444333366677643211100000
Q ss_pred CccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEE
Q psy2110 69 PEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCA 148 (622)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~ 148 (622)
... ........+.++...++|...+.. . +-|.+|+..+++...........- .-....|.++.
T Consensus 254 ~~~----~~~l~~~~i~~i~~d~~g~lWigt-~--~Gl~~~~~~~~~~~~~~~~~~~~~----------~l~~~~i~~i~ 316 (795)
T 4a2l_A 254 PSN----PKSISSNYIRSLAMDSQNRLWIGT-F--NDLNIYHEGTDSFASYSSNPVENG----------SLSQRSVRSIF 316 (795)
T ss_dssp TTC----TTSCSCSBEEEEEECTTSCEEEEE-S--SCEEEEETTTTEEEEECCCTTSTT----------SCSSSCEEEEE
T ss_pred CCC----ccccCCCeEEEEEEcCCCCEEEEe-C--ChhheEcCCCCeEEEEecCCCCCC----------CCCCCcEEEEE
Confidence 000 001123457788888888766544 3 258899988776543322111000 00112347888
Q ss_pred EcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Q psy2110 149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI 228 (622)
Q Consensus 149 ~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~ 228 (622)
..++|. |..|+.++-|..|+..++........... ..+ ....|.++...++|++. .|+.++-|..|+..++..
T Consensus 317 ~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~----~~l-~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~ 389 (795)
T 4a2l_A 317 MDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYK----NSL-SDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRF 389 (795)
T ss_dssp ECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTS----SSC-SCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCE
T ss_pred EeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCC----CCC-CCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcE
Confidence 888886 55566777799998766543221111100 011 12358899999988754 577777799999877655
Q ss_pred EEEecc--------CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----CCCCeEEEEEeCCCCeEEEE
Q psy2110 229 AKIISA--------HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-----FPSPILKVQFHPRNDHMFLV 295 (622)
Q Consensus 229 ~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~ 295 (622)
...... ....|.++...++|+.|..|+.++-|.+||..+++...... ....|.++...+++. +. .
T Consensus 390 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lw-i 467 (795)
T 4a2l_A 390 TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LW-L 467 (795)
T ss_dssp EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EE-E
T ss_pred EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EE-E
Confidence 433211 23578999998888857777777779999998877544322 235688888888776 33 3
Q ss_pred eeCCCcEEEEEecCCceeeccc------CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-------cCC
Q psy2110 296 CPMRHAAVLVDTDGDHQIVPID------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-------AST 362 (622)
Q Consensus 296 ~~~~~~i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~ 362 (622)
++. +.+.+++..+........ .....+.++..+++|...+.. ..| +..|+..+++. .+. ...
T Consensus 468 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~--~~~~~~~~~~l~~ 542 (795)
T 4a2l_A 468 GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EEG-LSVFKQEGLDI--QKASILPVSNVTK 542 (795)
T ss_dssp EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SSC-EEEEEEETTEE--EECCCSCSCGGGG
T ss_pred Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-CCc-eEEEeCCCCeE--EEecCCCCCCCCC
Confidence 334 458888877654322211 123567888888888766654 444 88899877655 332 234
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec--cccceeeeeEEEcCCCCeEEEeeCCCCeE
Q psy2110 363 TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD--LVNKTMWKKCCFSGDGEYVCAGSARQHAL 440 (622)
Q Consensus 363 ~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~d~~i 440 (622)
..|.++...++|+..+ ++.. -|..||... ..+..+.. ......+.++...++|++.+++. . -|
T Consensus 543 ~~i~~i~~d~~g~lWi-gT~~-Gl~~~d~~~----------~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--~-Gl 607 (795)
T 4a2l_A 543 LFTNCIYEASNGIIWV-GTRE-GFYCFNEKD----------KQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--R-GI 607 (795)
T ss_dssp SCEEEEEECTTSCEEE-EESS-CEEEEETTT----------TEEEEECGGGTCSCSCEEEEEECTTSCEEEEET--T-EE
T ss_pred CeeEEEEECCCCCEEE-EeCC-CceeECCCC----------CcEEEeCCCCCCchhheEEEEECCCCCEEEEcC--C-ce
Confidence 5789999999998554 4444 577888652 12222211 11223456778888888666553 4 48
Q ss_pred EEEECCCCeeEEEEecCCC---Cce--eEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110 441 YIWEKSVGNLVKILHGTKG---ELL--LDVVWHPVRPIIASISSGVVSLWAQN 488 (622)
Q Consensus 441 ~iwd~~~~~~~~~~~~~~~---~~v--~~v~~sp~~~~l~s~~dg~v~iw~~~ 488 (622)
..|+..+++ +..+....+ ..+ .++...++|.+.+.+.+|. ..+++.
T Consensus 608 ~~~~~~~~~-~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl-~~~~p~ 658 (795)
T 4a2l_A 608 SCFNPETEK-FRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGI-TTFRPE 658 (795)
T ss_dssp EEEETTTTE-EEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTEE-EEECGG
T ss_pred EEEcCCCCc-EEEcCCcCCCccccCccCceeECCCCeEEEecCCce-EEEcHH
Confidence 889988765 344443322 112 4667788888777665774 444543
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.44 E-value=7.1e-11 Score=113.34 Aligned_cols=240 Identities=11% Similarity=0.078 Sum_probs=157.3
Q ss_pred eEEEeccCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEE
Q psy2110 228 IAKIISAHMHPVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVD 306 (622)
Q Consensus 228 ~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d 306 (622)
.+..+..+.....++.|+++|+ .+++...++.|..|+. +++..........+..++++++++ ++++...++.|.+|+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEEC
Confidence 3444555556678899999998 4556666789999998 555433334667789999999987 555555567888888
Q ss_pred ecCCceeecc--cC-CCCceEEEEEeeCCCEEEE----Eec-------------CCeEEEEeCCCccEEEEEecCCCCEE
Q psy2110 307 TDGDHQIVPI--DE-DSDLSIVASFDRRGQHVVT----GNS-------------KGKVLVLSCPALELKASFKASTTAIK 366 (622)
Q Consensus 307 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~i~ 366 (622)
.......... .. ....+..++++++|+++++ |.. .+.|..||..+++..... .....+
T Consensus 114 ~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 114 ADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp TTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred CCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 7532111110 11 1123557899999998886 332 356888888767654433 335568
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeE
Q psy2110 367 SIEFARRGNCLLVNTGD------RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHAL 440 (622)
Q Consensus 367 ~~~~s~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i 440 (622)
.++|+|+++.|+++... +.|++|++.... ......+... .......++++++|++.+ +.. + .|
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-------l~~~~~~~~~-~~~~pdgi~~d~~G~lwv-~~~-~-gv 260 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-------LHDRRHFASV-PDGLPDGFCVDRGGWLWS-SSG-T-GV 260 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-------EEEEEEEECC-SSSCCCSEEECTTSCEEE-CCS-S-EE
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-------ccCCeEEEEC-CCCCCCeEEECCCCCEEE-ecC-C-cE
Confidence 89999999988887665 689999986310 0001111111 111224579999999544 443 4 49
Q ss_pred EEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEEe
Q psy2110 441 YIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLW 485 (622)
Q Consensus 441 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw 485 (622)
++|+. .++.+..+..+. . +.+++|+|+++.|+.++.+.++.+
T Consensus 261 ~~~~~-~g~~~~~~~~~~-~-~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 261 CVFDS-DGQLLGHIPTPG-T-ASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEECT-TSCEEEEEECSS-C-CCEEEECTTSCEEEEEETTEEEEE
T ss_pred EEECC-CCCEEEEEECCC-c-eeEEEEeCCCCEEEEEcCCeEEEE
Confidence 99998 577788887665 3 899999999998887774444433
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.44 E-value=5.9e-11 Score=126.54 Aligned_cols=308 Identities=14% Similarity=0.153 Sum_probs=192.0
Q ss_pred CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII 232 (622)
Q Consensus 153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~ 232 (622)
+..|++++.++.|..+|..+|+.+-.+.............|......+++ .+..+++++.++.|..+|..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 55777777889999999999988776654322111000000000011122 3567888889999999999999998777
Q ss_pred ccC--CcCeeEEEEcC---CCCEEEEEe------CCCcEEEEECCCCcEEEEEeC-C-CC--------------------
Q psy2110 233 SAH--MHPVCSISWSR---NGYKIISAS------TDNNVCIWDVLTGECEQKYRF-P-SP-------------------- 279 (622)
Q Consensus 233 ~~~--~~~v~~~~~s~---~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~-~-~~-------------------- 279 (622)
... ......+..+| ++ .++.++ .++.|+.||..+|+.+..+.. + .+
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 642 11111111122 44 444443 368999999999999877752 1 00
Q ss_pred ----------eEEEEEeCCCCeEEEEeeCCC-------------------cEEEEEecCCceeecccCC--C-------C
Q psy2110 280 ----------ILKVQFHPRNDHMFLVCPMRH-------------------AAVLVDTDGDHQIVPIDED--S-------D 321 (622)
Q Consensus 280 ----------v~~~~~~~~~~~~~~~~~~~~-------------------~i~~~d~~~~~~~~~~~~~--~-------~ 321 (622)
...+++.|+... ++++..++ .+..+|..+++.+..+... . .
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNL-LYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeecCCCCccccceeEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 124678887764 45555443 4899999998887665432 1 1
Q ss_pred ceEEEEEeeCCC---EEEEEecCCeEEEEeCCCccEEEEEecCCC-----------------------------------
Q psy2110 322 LSIVASFDRRGQ---HVVTGNSKGKVLVLSCPALELKASFKASTT----------------------------------- 363 (622)
Q Consensus 322 ~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------------------------------- 363 (622)
.........+|+ .++.++.+|.++++|..+|+++........
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 122222334565 788899999999999999998854432110
Q ss_pred ----CEEEEEEcCCCCEEEEEeCC---------------------------------------------CcEEEEecccc
Q psy2110 364 ----AIKSIEFARRGNCLLVNTGD---------------------------------------------RLIRVYNHQEV 394 (622)
Q Consensus 364 ----~i~~~~~s~~~~~l~~~~~d---------------------------------------------~~i~i~d~~~~ 394 (622)
.-..++++|+..++++.+.+ +.|+.||+.+
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t- 464 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK- 464 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-
Confidence 01136888988887776433 4566666652
Q ss_pred cccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-E
Q psy2110 395 LNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-I 473 (622)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~ 473 (622)
.+.+-.+... ..+....++..|.+|+.++. |+.|+.||.++|+.+..++.+.+....-+.|..+|+ +
T Consensus 465 --------G~~~W~~~~~---~~~~~g~~~tagglvf~gt~-dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 465 --------QQAAWEVPYV---TIFNGGTLSTAGNLVFEGSA-DGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp --------TEEEEEEEES---SSCCCCEEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred --------CCeEeEccCC---CCccCccceECCCEEEEECC-CCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 2222222211 11122356667888888886 999999999999999988866543234577888887 4
Q ss_pred EEEE
Q psy2110 474 IASI 477 (622)
Q Consensus 474 l~s~ 477 (622)
+++.
T Consensus 533 v~~~ 536 (689)
T 1yiq_A 533 VTFM 536 (689)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.44 E-value=7.2e-10 Score=109.90 Aligned_cols=305 Identities=8% Similarity=0.004 Sum_probs=187.0
Q ss_pred CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCC
Q psy2110 93 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT 172 (622)
Q Consensus 93 ~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 172 (622)
+..|++++.+ +.|..+|..+|+.+........... . ..+... .......++..+++++.++.|..+|..+
T Consensus 53 ~~~v~~~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~------~--~~~~~~-~~~~~~~~~~~v~v~~~~g~l~a~d~~t 122 (376)
T 3q7m_A 53 DNVVYAADRA-GLVKALNADDGKEIWSVSLAEKDGW------F--SKEPAL-LSGGVTVSGGHVYIGSEKAQVYALNTSD 122 (376)
T ss_dssp TTEEEEECTT-SEEEEEETTTCCEEEEEECCC---C------C--SCCCCC-EEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred CCEEEEEcCC-CeEEEEEccCCceeeeecCcccccc------c--cccCcc-cccCceEeCCEEEEEcCCCEEEEEECCC
Confidence 5566666654 8999999999999877665321100 0 000000 0111222456788888899999999999
Q ss_pred cccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe-----eEEEEcCC
Q psy2110 173 RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV-----CSISWSRN 247 (622)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~s~~ 247 (622)
|+.+......... ....... +..+++++.++.|..+|..+++.+.......... ......
T Consensus 123 G~~~W~~~~~~~~-----------~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-- 187 (376)
T 3q7m_A 123 GTVAWQTKVAGEA-----------LSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-- 187 (376)
T ss_dssp CCEEEEEECSSCC-----------CSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--
T ss_pred CCEEEEEeCCCce-----------EcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--
Confidence 9876555433211 0001111 4577888889999999999999887766432211 122222
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCe------------EEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110 248 GYKIISASTDNNVCIWDVLTGECEQKYRFPSPI------------LKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP 315 (622)
Q Consensus 248 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v------------~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 315 (622)
+..++.+..++.|..+|..+++.+.......+. ...... +. .+++++.++.+..+|..+++.+..
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~-~v~~~~~~g~l~~~d~~tG~~~w~ 264 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NG-VVFALAYNGNLTALDLRSGQIMWK 264 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--TT-EEEEECTTSCEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--CC-EEEEEecCcEEEEEECCCCcEEee
Confidence 446788888999999999999988777643211 111111 22 466667788999999988877655
Q ss_pred ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccc
Q psy2110 316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEV 394 (622)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 394 (622)
.... ....+. .++..+++++.++.+..+|..+++.+..... ....+..+.. .+..|++++.+|.|+++|..+
T Consensus 265 ~~~~--~~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t- 337 (376)
T 3q7m_A 265 RELG--SVNDFI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVED- 337 (376)
T ss_dssp ECCC--CEEEEE--EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTT-
T ss_pred ccCC--CCCCce--EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCC-
Confidence 4432 223333 3467888888999999999999998877662 2222333333 246788899999999999873
Q ss_pred cccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEE
Q psy2110 395 LNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWE 444 (622)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd 444 (622)
.+.+........ ........ .+..|+.++. +|.|+.|+
T Consensus 338 --------G~~~~~~~~~~~-~~~~~~~~--~~~~l~v~~~-~G~l~~~~ 375 (376)
T 3q7m_A 338 --------GRFVAQQKVDSS-GFQTEPVA--ADGKLLIQAK-DGTVYSIT 375 (376)
T ss_dssp --------CCEEEEEECCTT-CBCSCCEE--ETTEEEEEBT-TSCEEEEE
T ss_pred --------CcEEEEEecCCC-cceeCCEE--ECCEEEEEeC-CCEEEEEe
Confidence 223322222111 11111122 2456667775 78898886
No 225
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.44 E-value=7.5e-12 Score=125.98 Aligned_cols=312 Identities=9% Similarity=-0.004 Sum_probs=201.4
Q ss_pred EEEEeeCCCcEEEEecCCcccccccccccCCCc---------------------------cc--ccccccceEEEEECC-
Q psy2110 155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEF---------------------------DG--ALDCISLAVTCAFNK- 204 (622)
Q Consensus 155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---------------------------~~--~~~~~~~v~~~~~s~- 204 (622)
.+.+|+..|.++|+-+.+++.+..+........ .+ .+. .........|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~-~gd~hh~~~s~t 95 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHD-NGDLHHVHMSFT 95 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCC-CCCBCCEEEEEE
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecc-cCCCCccccCCC
Confidence 356788899999998888776655433211100 01 010 01111234444
Q ss_pred ----CCCEEEEEeC-CCeEEEEEcCCCceEEEecc-CCcCeeEEEE-c-CCCCEEEEEeC------------------CC
Q psy2110 205 ----RGTLLAVGCN-DGRIVLWDFLTRGIAKIISA-HMHPVCSISW-S-RNGYKIISAST------------------DN 258 (622)
Q Consensus 205 ----~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~-s-~~~~~l~s~~~------------------d~ 258 (622)
||++|++... ++.|.+.|+.+.++.+.+.- .......+++ + |+++++++++. ++
T Consensus 96 ~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 96 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 8888877665 56799999999998875442 2245788888 5 89999988852 35
Q ss_pred cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC--------------cEEEEEecCCceeecccCCCCceE
Q psy2110 259 NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH--------------AAVLVDTDGDHQIVPIDEDSDLSI 324 (622)
Q Consensus 259 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------------~i~~~d~~~~~~~~~~~~~~~~~~ 324 (622)
.+.++|..+.+...++........++++|+++++++++.... .+.+.+.....
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~------------- 242 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE------------- 242 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH-------------
T ss_pred eEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee-------------
Confidence 799999999999999886557788999999998777775542 24444432211
Q ss_pred EEEEeeCCCEEEEEecCCeEEEEeCCC--ccE-EEEEecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCC
Q psy2110 325 VASFDRRGQHVVTGNSKGKVLVLSCPA--LEL-KASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKD 400 (622)
Q Consensus 325 ~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~ 400 (622)
.+.++|++... +.|.+.|.++ ++. +..+... ....++.++|||+++++++. +.+|.++|+....... .
T Consensus 243 --~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~-~ 314 (595)
T 1fwx_A 243 --KAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF-Y 314 (595)
T ss_dssp --HHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH-H
T ss_pred --EeccCCCeeEE----CcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc-c
Confidence 12244554443 4599999998 555 5555533 34468999999999888764 7889999998532100 0
Q ss_pred CCCCcce-eeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC----------CeeEEEEecCCCCc----eeEE
Q psy2110 401 GDPEPIQ-KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV----------GNLVKILHGTKGEL----LLDV 465 (622)
Q Consensus 401 ~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~----v~~v 465 (622)
+...+-. ..........-..++|+|+| ++.+...-+++|.+||+.. .+.+..+..|.... -..+
T Consensus 315 ~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~ 393 (595)
T 1fwx_A 315 ENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGE 393 (595)
T ss_dssp SCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTT
T ss_pred cccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccce
Confidence 0000000 11111222333567999999 7777766699999999877 56777777665310 1223
Q ss_pred EECCCCCEEEEEe--C-CcE-----------EEeecCC
Q psy2110 466 VWHPVRPIIASIS--S-GVV-----------SLWAQNQ 489 (622)
Q Consensus 466 ~~sp~~~~l~s~~--d-g~v-----------~iw~~~~ 489 (622)
..+|||++|+++. . ..+ +++++.+
T Consensus 394 t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~ 431 (595)
T 1fwx_A 394 TLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG 431 (595)
T ss_dssp STTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred EeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence 5689999999886 3 334 8888864
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.43 E-value=4.6e-12 Score=122.98 Aligned_cols=252 Identities=10% Similarity=-0.053 Sum_probs=169.6
Q ss_pred eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe----------CCCcEEEEECCCCcEEEEEeCC--------C
Q psy2110 217 RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS----------TDNNVCIWDVLTGECEQKYRFP--------S 278 (622)
Q Consensus 217 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~--------~ 278 (622)
.|.++|..+++.+.++.....+ .+.++||+++++++. .++.|.+||+.+++.+..+..+ .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999998866566 799999999998886 3678999999999999998743 3
Q ss_pred CeEEEEEeCCCCeEEEEeeC-CCcEEE--EEecCCceeecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCC---
Q psy2110 279 PILKVQFHPRNDHMFLVCPM-RHAAVL--VDTDGDHQIVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPA--- 351 (622)
Q Consensus 279 ~v~~~~~~~~~~~~~~~~~~-~~~i~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~--- 351 (622)
....++++|++++++++... ...+.+ +|..+ +..+..... ..+.|++ ..+++.+.||.+.+.++.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 46789999999987777654 466777 78766 222221111 1123444 3445566788888888876
Q ss_pred --ccEEEE----EecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecc------c--ccee
Q psy2110 352 --LELKAS----FKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL------V--NKTM 417 (622)
Q Consensus 352 --~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~--~~~~ 417 (622)
++.... +.....+. . ++++..++..+. +.|.+.|.... ....+..+... . ....
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~-------~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAA-------GATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSS-------CCEEECCCCSSCTHHHHTTEEECS
T ss_pred cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCC-------cceEEEEEEeccccccccccccCc
Confidence 433211 11122333 3 666676777766 89999998621 10111111100 0 0011
Q ss_pred eeeEEEcCCCCeEEEeeC---C-----CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-EEEEEe--CCcEEEee
Q psy2110 418 WKKCCFSGDGEYVCAGSA---R-----QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-IIASIS--SGVVSLWA 486 (622)
Q Consensus 418 ~~~~~~spdg~~l~~~~~---~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~--dg~v~iw~ 486 (622)
...++|+|||+.++.+.. . +..+.++|+.+++.++.+..... ...++|+|+++ ++++.. ++.|.++|
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~--p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD--SDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE--ECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC--cceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 122689999998887543 1 13466999999999988876542 88999999997 455554 79999999
Q ss_pred cCCcc
Q psy2110 487 QNQVE 491 (622)
Q Consensus 487 ~~~~~ 491 (622)
+.+.+
T Consensus 344 ~~t~k 348 (368)
T 1mda_H 344 AASDQ 348 (368)
T ss_dssp SSSCE
T ss_pred CCCCc
Confidence 97543
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=5.1e-11 Score=114.35 Aligned_cols=222 Identities=11% Similarity=0.046 Sum_probs=151.4
Q ss_pred eEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110 145 VTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF 223 (622)
Q Consensus 145 ~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~ 223 (622)
....|+|+++ ++++...++.|..|+. +++ ...+.... ..+..++++++|+++++...++.|.+|+.
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~-----------~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDAT-----------AFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESC-----------SCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCC-----------CccceeeECCCCCEEEEECCCCEEEEECC
Confidence 4889999998 5667777889999987 443 22232221 24688999999997766666688999997
Q ss_pred CCCceEEEecc----CCcCeeEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCcEEEEEeCCCCeEE
Q psy2110 224 LTRGIAKIISA----HMHPVCSISWSRNGYKIIS----AST-------------DNNVCIWDVLTGECEQKYRFPSPILK 282 (622)
Q Consensus 224 ~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~v~~ 282 (622)
. ++....... ....++.++++++|+.+++ |.. .+.|..||..+++..... .......
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~g 192 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNG 192 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcc
Confidence 5 543322211 1134678999999997776 321 246888888777665544 3445678
Q ss_pred EEEeCCCCeEEEEeeC-----CCcEEEEEecCCce---eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE
Q psy2110 283 VQFHPRNDHMFLVCPM-----RHAAVLVDTDGDHQ---IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL 354 (622)
Q Consensus 283 ~~~~~~~~~~~~~~~~-----~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 354 (622)
++|+|+++.++++... .+.|..|++..... .............++++++|++.+ ++.+ .|.+|+. +++.
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~ 269 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQL 269 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCE
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCE
Confidence 9999999877666554 37899999875431 011111233345688999998544 4444 4999997 5777
Q ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy2110 355 KASFKASTTAIKSIEFARRGNCLLVNTGDRL 385 (622)
Q Consensus 355 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 385 (622)
+..+..+. .+.+++|+++++.|.+++.++.
T Consensus 270 ~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 270 LGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred EEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 77777665 5889999999998888887643
No 228
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=8.2e-12 Score=122.06 Aligned_cols=276 Identities=12% Similarity=0.069 Sum_probs=174.0
Q ss_pred ceeEEEEcCCCCEEEEecC-CCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110 83 MWKKCCFSGDGEYVCAGSA-RQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN 161 (622)
Q Consensus 83 ~~~~~~~sp~~~~l~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 161 (622)
.+..++++|+|+.+++... +++.++||.+.+++. ..+..... ........+..++++++++++++-..
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~----------~~~~~~~~p~gv~~d~~g~L~v~D~g 86 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSG----------NAIITFDTVLGIKSDGNGIVWMLDNG 86 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCS----------SCCCCCSCEEEEEECSSSEEEEEECH
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCccc----------CcccceeEeeEEEEcCCCcEEEEcCC
Confidence 4567999999999888532 223356666654542 22221100 00112234579999999986665443
Q ss_pred -----CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEE-EEe---CCCeEEEEEcCCCceEEEe
Q psy2110 162 -----DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLA-VGC---NDGRIVLWDFLTRGIAKII 232 (622)
Q Consensus 162 -----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~---~dg~i~iwd~~~~~~~~~~ 232 (622)
++.|.+||+.+++.+..+....... .....+..+++++++..++ +.. .++.|.+||+.+++..+.+
T Consensus 87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~-----~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPIT-----LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp HHHTSCCEEEEEETTTTEEEEEEECCTTTS-----CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred CCcCCCCeEEEEECCCCeEEEEEECChhhc-----ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 5789999999887666554321110 0112357889998655554 444 5789999999988877777
Q ss_pred ccCCcCee-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC--
Q psy2110 233 SAHMHPVC-SISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG-- 309 (622)
Q Consensus 233 ~~~~~~v~-~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-- 309 (622)
.+|..... ...+..+|..+.+.+.++.++.|. ..+..++|+|+++.++++......++.++...
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~ 228 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLS 228 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHT
T ss_pred cCCCcccccccceeECCEEEEeccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhc
Confidence 65432111 134455777777777888876663 24678999999987766666555666666421
Q ss_pred -Cc----e-ee--cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec-CCCCEEEEEEcCCCCEEEEE
Q psy2110 310 -DH----Q-IV--PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA-STTAIKSIEFARRGNCLLVN 380 (622)
Q Consensus 310 -~~----~-~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~ 380 (622)
.. . .. ....+......++++++|.++++...++.|.+||..+++....... +.....+++|.++++++++.
T Consensus 229 ~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 229 NLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp CTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred CCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEe
Confidence 10 0 00 0111223455689999999999988899999999856664433332 24568899999999877777
Q ss_pred eCCCcEE
Q psy2110 381 TGDRLIR 387 (622)
Q Consensus 381 ~~d~~i~ 387 (622)
+..+.+.
T Consensus 309 ~~~~~~~ 315 (343)
T 2qe8_A 309 NQLHHSA 315 (343)
T ss_dssp CCGGGSG
T ss_pred Ccccccc
Confidence 6554443
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.43 E-value=2.2e-10 Score=121.83 Aligned_cols=312 Identities=13% Similarity=0.099 Sum_probs=199.0
Q ss_pred CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccc-cceeEEEEcCCCCEEEEeeCCCcEEEEecC
Q psy2110 93 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCI-SLAVTCAFNKRGTLLAVGCNDGRIVLWDFL 171 (622)
Q Consensus 93 ~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 171 (622)
+..|++++.+ +.|+.+|..+|+.+..+........ ....|. .....+++ ++..|++++.|+.|..+|..
T Consensus 77 ~g~vyv~~~~-~~v~AlD~~tG~~~W~~~~~~~~~~-------~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~ 146 (677)
T 1kb0_A 77 DGIMYVSASW-SVVHAIDTRTGNRIWTYDPQIDRST-------GFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAA 146 (677)
T ss_dssp TTEEEEECGG-GCEEEEETTTTEEEEEECCCCCGGG-------GGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred CCEEEEECCC-CeEEEEECCCCcEEEEEcCCCCccc-------cccccccCCCCCceE--ECCEEEEEcCCCEEEEEECC
Confidence 4455555544 8999999999999988875432110 000000 00012233 46688888999999999999
Q ss_pred CcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC------CCeEEEEEcCCCceEEEeccCCcC-------
Q psy2110 172 TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN------DGRIVLWDFLTRGIAKIISAHMHP------- 238 (622)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------- 238 (622)
+|+.+-.+...........+.. ..+ . .+..+++++. ++.|+.+|..+++.+..+......
T Consensus 147 tG~~~W~~~~~~~~~~~~~~~~-~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~ 219 (677)
T 1kb0_A 147 TGKEVWHQNTFEGQKGSLTITG-APR----V--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFED 219 (677)
T ss_dssp TCCEEEEEETTTTCCSSCBCCS-CCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSS
T ss_pred CCCEEeeecCCcCcCcCccccc-CcE----E--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccc
Confidence 9988776654311000000000 011 1 1345555543 689999999999998777532211
Q ss_pred -------------------------eeEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCcEEEEE
Q psy2110 239 -------------------------VCSISWSRNGYKIISASTDN-------------------NVCIWDVLTGECEQKY 274 (622)
Q Consensus 239 -------------------------v~~~~~s~~~~~l~s~~~d~-------------------~i~iwd~~~~~~~~~~ 274 (622)
...+++++++..++.+..++ .|..+|..+|+.+..+
T Consensus 220 ~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~ 299 (677)
T 1kb0_A 220 ESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY 299 (677)
T ss_dssp HHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred cccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE
Confidence 13578888888888887654 4999999999998887
Q ss_pred eCC----------CCeEEEEEeCCCC--eEEEEeeCCCcEEEEEecCCceeecccCCC-----------Cce--------
Q psy2110 275 RFP----------SPILKVQFHPRND--HMFLVCPMRHAAVLVDTDGDHQIVPIDEDS-----------DLS-------- 323 (622)
Q Consensus 275 ~~~----------~~v~~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------~~~-------- 323 (622)
+.. ....-+....+|+ .+++.++.++.++++|..+++.+....... ..+
T Consensus 300 ~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 379 (677)
T 1kb0_A 300 QETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDG 379 (677)
T ss_dssp ESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCT
T ss_pred ecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcC
Confidence 621 1222233334563 578888999999999999887765443211 000
Q ss_pred ----------------EEEEEeeCCCEEEEEecC-------------------------------------------CeE
Q psy2110 324 ----------------IVASFDRRGQHVVTGNSK-------------------------------------------GKV 344 (622)
Q Consensus 324 ----------------~~~~~~~~~~~l~~~~~d-------------------------------------------g~i 344 (622)
..++++|++.++++...+ |.|
T Consensus 380 ~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l 459 (677)
T 1kb0_A 380 SKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRL 459 (677)
T ss_dssp TSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEE
T ss_pred CCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEE
Confidence 146789988888775431 789
Q ss_pred EEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEc
Q psy2110 345 LVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFS 424 (622)
Q Consensus 345 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 424 (622)
..||+.+++.+.++... ..+.+..+...+..+++++.|+.+++||.. ..+.+..+..... ....-+.|+
T Consensus 460 ~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~---------tG~~lw~~~~~~~-~~~~p~~y~ 528 (677)
T 1kb0_A 460 LAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAA---------TGEKLWEAPTGTG-VVAAPSTYM 528 (677)
T ss_dssp EEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETT---------TCCEEEEEECSSC-CCSCCEEEE
T ss_pred EEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECC---------CCceeeeeeCCCC-cccCCEEEE
Confidence 99999999988887643 334445566778888889999999999998 3455555543221 111235677
Q ss_pred CCCCeEEE
Q psy2110 425 GDGEYVCA 432 (622)
Q Consensus 425 pdg~~l~~ 432 (622)
.+|+.+++
T Consensus 529 ~~G~~~v~ 536 (677)
T 1kb0_A 529 VDGRQYVS 536 (677)
T ss_dssp ETTEEEEE
T ss_pred eCCEEEEE
Confidence 88865443
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.42 E-value=7.3e-11 Score=114.62 Aligned_cols=233 Identities=12% Similarity=0.132 Sum_probs=159.7
Q ss_pred EEc--CCCCEEEEecCCCCeEEEEEcCCC----ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110 88 CFS--GDGEYVCAGSARQHALYIWEKSVG----NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN 161 (622)
Q Consensus 88 ~~s--p~~~~l~~~~~~~~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 161 (622)
.++ +++++|++.+..++.|+|+|+.+. +..+++... .+. ........+.+..+|+| +++++..
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~--~~~--------~~~g~s~Ph~~~~~pdG-i~Vs~~g 156 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPE--EVK--------KVSGYSRLHTVHCGPDA-IYISALG 156 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHH--HHH--------HHHCEEEEEEEEECSSC-EEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechh--hcc--------cccCCCcccceeECCCe-EEEEcCC
Confidence 446 889999988877899999999765 555555310 000 00001122578889999 7776655
Q ss_pred C------CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-------------------CCC
Q psy2110 162 D------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-------------------NDG 216 (622)
Q Consensus 162 d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------------------~dg 216 (622)
+ |.|.+.|..+++.+..+.....+. .....+.|+|+++.+++.. ...
T Consensus 157 ~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~--------~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d 228 (462)
T 2ece_A 157 NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQ--------YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGN 228 (462)
T ss_dssp ETTSCSCCEEEEECTTTCCEEEECCSBCTTC--------CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCC
T ss_pred CcCCCCCCeEEEEECCCCeEEEEEccCCCCc--------cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCC
Confidence 5 789999999998888776442221 1234578899999888874 368
Q ss_pred eEEEEEcCCCceEEEeccC-C-cCeeEEEE--cCCCCEEEEEe------CCCcEEEEECCCCcE--EEEEe--C------
Q psy2110 217 RIVLWDFLTRGIAKIISAH-M-HPVCSISW--SRNGYKIISAS------TDNNVCIWDVLTGEC--EQKYR--F------ 276 (622)
Q Consensus 217 ~i~iwd~~~~~~~~~~~~~-~-~~v~~~~~--s~~~~~l~s~~------~d~~i~iwd~~~~~~--~~~~~--~------ 276 (622)
+|.+||+.+++.+.++... . .....+.| +|++++++.++ .+++|.+|....++. .+.+. .
T Consensus 229 ~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~ 308 (462)
T 2ece_A 229 RIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGN 308 (462)
T ss_dssp EEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSS
T ss_pred EEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccc
Confidence 9999999998888777643 1 23455656 99999888776 456888877655532 12211 0
Q ss_pred -----------CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC---ceeecccCCC--------------CceEEEEE
Q psy2110 277 -----------PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD---HQIVPIDEDS--------------DLSIVASF 328 (622)
Q Consensus 277 -----------~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~--------------~~~~~~~~ 328 (622)
......+.+++|++.++++.-..+.|.+||+... +.+..+.... ..-..+.+
T Consensus 309 lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l 388 (462)
T 2ece_A 309 LPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI 388 (462)
T ss_dssp CCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE
T ss_pred ccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEE
Confidence 2446789999999999999988999999998632 2232222210 12467889
Q ss_pred eeCCCEEEEEe
Q psy2110 329 DRRGQHVVTGN 339 (622)
Q Consensus 329 ~~~~~~l~~~~ 339 (622)
+|+|++|++++
T Consensus 389 SpDGk~LyVaN 399 (462)
T 2ece_A 389 SRDGRRVYVTN 399 (462)
T ss_dssp CTTSSEEEEEC
T ss_pred cCCCCEEEEEc
Confidence 99999999987
No 231
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=1.5e-11 Score=119.61 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=125.6
Q ss_pred ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc---------eEE-EEeccCcceeEEEEeecCccccccceeEEEEcCC
Q psy2110 83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN---------LVK-ILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR 152 (622)
Q Consensus 83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d 152 (622)
.+..+++++...++++|+.+ .+++|+++... ... ....+.. + +.++| |
T Consensus 39 ~~nlLais~~~gll~a~~~~--~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V-----------------~~l~f--d 96 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS--KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-V-----------------IFVCF--H 96 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT--EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-E-----------------EEEEE--E
T ss_pred cccEEEEcCCCCEEEEeCCC--EEEEEEhhHhhhhhccccccccceEEeeCCC-e-----------------eEEEE--C
Confidence 45679999999999999864 67779975433 000 1111222 3 69999 8
Q ss_pred CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII 232 (622)
Q Consensus 153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~ 232 (622)
+++|+++ .++.|++||+.+.........+. ..+..+.+.+. .+++++.||.+.+||+.++....
T Consensus 97 ~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~-----------~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-- 160 (388)
T 1xip_A 97 GDQVLVS-TRNALYSLDLEELSEFRTVTSFE-----------KPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-- 160 (388)
T ss_dssp TTEEEEE-ESSEEEEEESSSTTCEEEEEECS-----------SCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE--
T ss_pred CCEEEEE-cCCcEEEEEchhhhccCccceee-----------cceeeEEecCC--CEEEEECCCCEEEEEccCCcccc--
Confidence 9999999 88999999998765433333222 12556666554 38888999999999999877643
Q ss_pred ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEE------e----CCCCeEEEEEeCCCCeEEEE
Q psy2110 233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC--EQKY------R----FPSPILKVQFHPRNDHMFLV 295 (622)
Q Consensus 233 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~------~----~~~~v~~~~~~~~~~~~~~~ 295 (622)
+...|++++|||+| ++.|..||++++|+...++. ...+ . +...|.+++|.+++..+++.
T Consensus 161 --~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 161 --LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp --EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred --ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 44689999999999 77899999999999888776 5556 2 46779999999987755443
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.39 E-value=1.8e-10 Score=122.89 Aligned_cols=321 Identities=11% Similarity=0.061 Sum_probs=192.7
Q ss_pred cCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEE
Q psy2110 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK 118 (622)
Q Consensus 39 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~ 118 (622)
.+..+++++.++.+..+|..+....-......................+++ ++..|++++.+ +.|+.+|..+|+.+.
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~d-g~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLD-GRLEAIDAKTGQRAW 145 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTT-SEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccC-CEEEEEECCCCCEee
Confidence 466677777778888888764432211111000000000000000001122 35567777755 899999999999998
Q ss_pred EEecc-CcceeEEEEeecCccccccceeEEEEcC---CCCEEEEee-----CCCcEEEEecCCccccccccccc-CCCcc
Q psy2110 119 ILHGT-KGELLLDVVEFDGALDCISLAVTCAFNK---RGTLLAVGC-----NDGRIVLWDFLTRGIAKIISAHM-HPEFD 188 (622)
Q Consensus 119 ~~~~~-~~~v~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~s~~-----~dg~i~vw~~~~~~~~~~~~~~~-~~~~~ 188 (622)
.+... ..... ..+..+| ++..++..+ .+|.|+.||..+|+.+-.+.... .+...
T Consensus 146 ~~~~~~~~~~~----------------~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~ 209 (689)
T 1yiq_A 146 SVDTRADHKRS----------------YTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLP 209 (689)
T ss_dssp EEECCSCTTSC----------------CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred eecCcCCCCCC----------------ccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccc
Confidence 87653 11000 0111122 444443322 36899999999998776654211 00000
Q ss_pred ---ccc----------------ccccceEEEEECCCCCEEEEEeCCCe-------------------EEEEEcCCCceEE
Q psy2110 189 ---GAL----------------DCISLAVTCAFNKRGTLLAVGCNDGR-------------------IVLWDFLTRGIAK 230 (622)
Q Consensus 189 ---~~~----------------~~~~~v~~~~~s~~g~~l~~~~~dg~-------------------i~iwd~~~~~~~~ 230 (622)
..+ ........++++|++.+++++..++. |..+|..+++.+.
T Consensus 210 ~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W 289 (689)
T 1yiq_A 210 PEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVW 289 (689)
T ss_dssp CCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEE
T ss_pred cccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeE
Confidence 000 00011125788999899999887763 9999999999988
Q ss_pred Eecc--CC-------cCeeEEEEcCCCC---EEEEEeCCCcEEEEECCCCcEEEEEeCCC--C-----------------
Q psy2110 231 IISA--HM-------HPVCSISWSRNGY---KIISASTDNNVCIWDVLTGECEQKYRFPS--P----------------- 279 (622)
Q Consensus 231 ~~~~--~~-------~~v~~~~~s~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~----------------- 279 (622)
.++. |. .+........+|+ .++.++.+|.++++|..+|+.+....... .
T Consensus 290 ~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~ 369 (689)
T 1yiq_A 290 HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEEN 369 (689)
T ss_dssp EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHH
T ss_pred eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhh
Confidence 7764 21 1111222223565 78889999999999999999885544221 0
Q ss_pred ---------------------eEEEEEeCCCCeEEEEee-----------------------------------------
Q psy2110 280 ---------------------ILKVQFHPRNDHMFLVCP----------------------------------------- 297 (622)
Q Consensus 280 ---------------------v~~~~~~~~~~~~~~~~~----------------------------------------- 297 (622)
-..++++|+...+++...
T Consensus 370 ~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~ 449 (689)
T 1yiq_A 370 AAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEM 449 (689)
T ss_dssp HCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHH
T ss_pred ccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCC
Confidence 112678887765444321
Q ss_pred ---CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCC-EEEEEEcCC
Q psy2110 298 ---MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTA-IKSIEFARR 373 (622)
Q Consensus 298 ---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~s~~ 373 (622)
.++.+..||+.+++.+.....+... ....+...+..++.++.||.++.||.++++.+.+++..... ..-+.|..+
T Consensus 450 ~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~ 528 (689)
T 1yiq_A 450 AKSWSGKLIAWDPVKQQAAWEVPYVTIF-NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVD 528 (689)
T ss_dssp HTTCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CCCcceeEEEEECCCCCeEeEccCCCCc-cCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEEC
Confidence 1367999999998877766554432 22356677889999999999999999999999988855332 244667778
Q ss_pred CCEEEE
Q psy2110 374 GNCLLV 379 (622)
Q Consensus 374 ~~~l~~ 379 (622)
|+..++
T Consensus 529 G~qyv~ 534 (689)
T 1yiq_A 529 GEQYVT 534 (689)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 874443
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.39 E-value=4.6e-10 Score=109.05 Aligned_cols=224 Identities=8% Similarity=0.004 Sum_probs=153.1
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCC----cEEEEEe--------CCCCeEEEEEeCCCCeEEEEeeCC------CcEEEEE
Q psy2110 246 RNGYKIISAS-TDNNVCIWDVLTG----ECEQKYR--------FPSPILKVQFHPRNDHMFLVCPMR------HAAVLVD 306 (622)
Q Consensus 246 ~~~~~l~s~~-~d~~i~iwd~~~~----~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~------~~i~~~d 306 (622)
.++++|+..+ .++.|.++|+.+. +..+.++ .......+..+|++ +++++..+ +.+.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 7788776654 5688999999755 6666663 11245567888998 55655444 7899999
Q ss_pred ecCCceeecccCCC---CceEEEEEeeCCCEEEEEe-------------------cCCeEEEEeCCCccEEEEEecCC--
Q psy2110 307 TDGDHQIVPIDEDS---DLSIVASFDRRGQHVVTGN-------------------SKGKVLVLSCPALELKASFKAST-- 362 (622)
Q Consensus 307 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~-- 362 (622)
..+.+.+..+.... ..-+.+.|+|+++.+++.. ...+|.+||+.+++.+.++....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 99888887776332 2344588899999888874 36799999999998888887531
Q ss_pred CCEEEEEE--cCCCCEEEEEe------CCCcEEEEecccccccCCCCCCCcceeee--c---------cc----c-ceee
Q psy2110 363 TAIKSIEF--ARRGNCLLVNT------GDRLIRVYNHQEVLNAGKDGDPEPIQKLQ--D---------LV----N-KTMW 418 (622)
Q Consensus 363 ~~i~~~~~--s~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--~---------~~----~-~~~~ 418 (622)
.....+.| +|+++++.+++ .+++|.+|..+. +.....+.+. . .. . ....
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-------g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-------GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-------TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-------CceeEEEEEeCCCccccccccccccccccCCCce
Confidence 23445656 99999888876 456787766542 1111111110 0 00 0 1234
Q ss_pred eeEEEcCCCCeEEEeeCCCCeEEEEECCC---CeeEEEEecCC---------CC----ceeEEEECCCCCEEEEEe
Q psy2110 419 KKCCFSGDGEYVCAGSARQHALYIWEKSV---GNLVKILHGTK---------GE----LLLDVVWHPVRPIIASIS 478 (622)
Q Consensus 419 ~~~~~spdg~~l~~~~~~d~~i~iwd~~~---~~~~~~~~~~~---------~~----~v~~v~~sp~~~~l~s~~ 478 (622)
..+.+||||++|.++....+.|.+||+.. .+++..+.... +. ....++++|+|++|+.+.
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 57899999999999988889999999853 35555554320 00 158899999999888774
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.38 E-value=1.6e-11 Score=119.45 Aligned_cols=299 Identities=12% Similarity=0.087 Sum_probs=191.4
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q psy2110 146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT 225 (622)
Q Consensus 146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~ 225 (622)
++.+..++ .|..++.++.|..|| .+++......... ..+.++...++|. |.+++.+ +..+|. +
T Consensus 24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~-----------~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~ 86 (330)
T 3hxj_A 24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGE-----------IIECRPSIGKDGT-IYFGSDK--VYAINP-D 86 (330)
T ss_dssp CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGG-----------EEEECCEETTTTE-ECCSSCE--EEEECC-C
T ss_pred CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCC-----------CcccceEEecCCc-EEEecCc--EEEECC-C
Confidence 34444555 466677788899999 7776654433221 2346667777775 4445444 888885 5
Q ss_pred CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCeEEEEEeCCCCeEEEEeeCCCcEEE
Q psy2110 226 RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF-PSPILKVQFHPRNDHMFLVCPMRHAAVL 304 (622)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~i~~ 304 (622)
++....+...........+. +..|+.++.++.|..+|.. ++....... ...+.++...+++. +.+++.++.+..
T Consensus 87 g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~ 161 (330)
T 3hxj_A 87 GTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYA 161 (330)
T ss_dssp GGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEE
T ss_pred CcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEE
Confidence 55544443333333333343 4567888888999999988 777666653 33455666666665 555677789999
Q ss_pred EEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q psy2110 305 VDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR 384 (622)
Q Consensus 305 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 384 (622)
+|.. +............+..+...+++..++. + +.|..+| .+++.+..+......+.++...++|. |.+++.++
T Consensus 162 ~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~ 235 (330)
T 3hxj_A 162 INPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDG 235 (330)
T ss_dssp ECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTT
T ss_pred ECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCC
Confidence 9988 6555555544555666777777775554 4 6799999 78887777776667788889988876 56677778
Q ss_pred cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeE
Q psy2110 385 LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLD 464 (622)
Q Consensus 385 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 464 (622)
.|..++... ..+..+... ......+.+.++|. |..++. ++.|+.+|. +++.+..+...... +.+
T Consensus 236 gl~~~~~~g----------~~~~~~~~~--~~~~~~~~~~~~g~-l~v~t~-~ggl~~~d~-~g~~~~~~~~~~~~-~~~ 299 (330)
T 3hxj_A 236 HLYAINPDG----------TEKWRFKTG--KRIESSPVIGNTDT-IYFGSY-DGHLYAINP-DGTEKWNFETGSWI-IAT 299 (330)
T ss_dssp EEEEECTTS----------CEEEEEECS--SCCCSCCEECTTSC-EEEECT-TCEEEEECT-TSCEEEEEECSSCC-CSC
T ss_pred eEEEECCCC----------CEeEEeeCC--CCccccceEcCCCe-EEEecC-CCCEEEECC-CCcEEEEEEcCCcc-ccc
Confidence 888887431 222222211 11122345565665 555665 778999996 67777776654443 778
Q ss_pred EEECCCCCEEEEEeCCcEEEeecC
Q psy2110 465 VVWHPVRPIIASISSGVVSLWAQN 488 (622)
Q Consensus 465 v~~sp~~~~l~s~~dg~v~iw~~~ 488 (622)
+...+++.+.+.+.+|.+++....
T Consensus 300 ~~~d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 300 PVIDENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp CEECTTCCEEEECTTSCEEEEEC-
T ss_pred eEEcCCCEEEEEcCCCeEEEEecc
Confidence 888888887665559999887653
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.38 E-value=3.3e-11 Score=121.31 Aligned_cols=244 Identities=11% Similarity=0.030 Sum_probs=172.5
Q ss_pred CCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEE-c-CCCCEEEEee--------
Q psy2110 91 GDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAF-N-KRGTLLAVGC-------- 160 (622)
Q Consensus 91 p~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~-s-~d~~~l~s~~-------- 160 (622)
+||++|.....+++.|.+.|+.+.++...+.-..+.- +..+++ + |+++++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~----------------phg~~~~~~p~~~~v~~~~~~~~p~~~ 162 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKG----------------IHGLRPQKWPRSNYVFCNGEDETPLVN 162 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCS----------------EEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCC----------------CcceeeeecCCCcEEEEecccccccCC
Confidence 4899999888777899999999999888664332211 147787 5 8999998885
Q ss_pred ----------CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC--------------
Q psy2110 161 ----------NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG-------------- 216 (622)
Q Consensus 161 ----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-------------- 216 (622)
.++.+.+.|..+.+....+.....+ ..++++|+|+++++.+.+.
T Consensus 163 dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~p------------d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 163 DGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNL------------DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp SSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCC------------CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred CCcccccccccCceEEEEECCCCeEEEEEEeCCCc------------cceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 2457889999887766665532222 3468999999999988653
Q ss_pred -eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCC--CcE-EEEEeCCCCeEEEEEeCCCCeE
Q psy2110 217 -RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT--GEC-EQKYRFPSPILKVQFHPRNDHM 292 (622)
Q Consensus 217 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~--~~~-~~~~~~~~~v~~~~~~~~~~~~ 292 (622)
.|.+.+..... .+.++|++... +.|.+.|..+ ++. +..+.......++.++|||+++
T Consensus 231 d~v~V~~~~~~~---------------~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v 291 (595)
T 1fwx_A 231 DHIVVFNIAEIE---------------KAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHL 291 (595)
T ss_dssp EEEEEEEHHHHH---------------HHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEE
T ss_pred ceEEEeecccee---------------EeccCCCeeEE----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEE
Confidence 23444432211 12234443332 5699999998 655 6777766778889999999999
Q ss_pred EEEeeCCCcEEEEEecCCc------------eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC---------
Q psy2110 293 FLVCPMRHAAVLVDTDGDH------------QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA--------- 351 (622)
Q Consensus 293 ~~~~~~~~~i~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------- 351 (622)
++++..+..+.++|+.+.. ..... .-......++|+++|...++.-.+++|.+||+..
T Consensus 292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~ 370 (595)
T 1fwx_A 292 CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEK 370 (595)
T ss_dssp EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred EEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence 9999999999999998642 12222 2334567889999994444566789999999876
Q ss_pred -ccEEEEEecCCCCE-----EEEEEcCCCCEEEEEeC
Q psy2110 352 -LELKASFKASTTAI-----KSIEFARRGNCLLVNTG 382 (622)
Q Consensus 352 -~~~~~~~~~~~~~i-----~~~~~s~~~~~l~~~~~ 382 (622)
.+.+.++..|..+- .++.++|||++|++...
T Consensus 371 ~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 371 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred cceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 56778887765432 12245799999999864
No 236
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.37 E-value=2e-09 Score=104.09 Aligned_cols=226 Identities=11% Similarity=0.010 Sum_probs=148.4
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110 238 PVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316 (622)
Q Consensus 238 ~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 316 (622)
-..++.|++++. .+++...++.|..||..+++.. .+.....+.++.++|++.. +++. ...+.+||..++......
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l-~v~~--~~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQ-LIAS--DDGLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEE-EEEE--TTEEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeE-EEEE--CCCEEEEECCCCcEEEEe
Confidence 346788999755 4555556789999999887643 4556678999999999874 3333 345889998766533221
Q ss_pred cC----CCCceEEEEEeeCCCEEEEEec------CCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCc
Q psy2110 317 DE----DSDLSIVASFDRRGQHVVTGNS------KGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT-GDRL 385 (622)
Q Consensus 317 ~~----~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~ 385 (622)
.. ....+..++++++|+++++... .+.|..++ +++... +..+......++|+|+++.|+++. .++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 11 1235778999999997765542 25677777 454433 333334577999999999776654 5688
Q ss_pred EEEEecc--cccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCcee
Q psy2110 386 IRVYNHQ--EVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLL 463 (622)
Q Consensus 386 i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 463 (622)
|.+|++. .... ......+..+.. .......++++++|++.++... ++.|++|+. +++.+..+..+... ++
T Consensus 203 I~~~d~~~~~Gl~---~~~~~~~~~~~~--~~~~p~gi~~d~~G~lwva~~~-~~~v~~~d~-~g~~~~~i~~~~~~-~~ 274 (326)
T 2ghs_A 203 LMRVPLDARTGLP---TGKAEVFIDSTG--IKGGMDGSVCDAEGHIWNARWG-EGAVDRYDT-DGNHIARYEVPGKQ-TT 274 (326)
T ss_dssp EEEEEBCTTTCCB---SSCCEEEEECTT--SSSEEEEEEECTTSCEEEEEET-TTEEEEECT-TCCEEEEEECSCSB-EE
T ss_pred EEEEEcccccCCc---ccCceEEEECCC--CCCCCCeeEECCCCCEEEEEeC-CCEEEEECC-CCCEEEEEECCCCC-cE
Confidence 9999975 2100 001111111111 1123356899999987776654 678999998 67777888776655 99
Q ss_pred EEEEC-CCCCEEEEEe
Q psy2110 464 DVVWH-PVRPIIASIS 478 (622)
Q Consensus 464 ~v~~s-p~~~~l~s~~ 478 (622)
+++|+ |++..|+.++
T Consensus 275 ~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 275 CPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEEEESTTSCEEEEEE
T ss_pred EEEEecCCCCEEEEEe
Confidence 99998 8888765554
No 237
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.36 E-value=2.5e-11 Score=117.97 Aligned_cols=179 Identities=8% Similarity=0.068 Sum_probs=134.6
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccc-cccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110 144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI-ISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD 222 (622)
Q Consensus 144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd 222 (622)
+..+++++...++++|+.+ .+++|++.+.+.... -.....+ ........ |+.++| ++++|+++ .++.|++||
T Consensus 40 ~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~--~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTF--KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCC--SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccc--eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 3689999999999999987 566798765431100 0000000 00111123 899999 99999999 789999999
Q ss_pred cCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110 223 FLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAA 302 (622)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i 302 (622)
+.+.........|..++.++.+.+.. ++++..||.|.+||+.++.... +...|.+++|+|+| ++.+..++.+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG---~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ---LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE---EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc---eEEEEcCCcE
Confidence 98877666777788889988887653 8889999999999999887654 34689999999999 5678889999
Q ss_pred EEEEecCCce--eecc------c---CCCCceEEEEEeeCCCEEEE
Q psy2110 303 VLVDTDGDHQ--IVPI------D---EDSDLSIVASFDRRGQHVVT 337 (622)
Q Consensus 303 ~~~d~~~~~~--~~~~------~---~~~~~~~~~~~~~~~~~l~~ 337 (622)
++|+...... ...+ . .|...+.++.|.+++.++++
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999887663 3333 2 36788999999999988876
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.34 E-value=4.2e-09 Score=98.71 Aligned_cols=250 Identities=10% Similarity=0.035 Sum_probs=162.0
Q ss_pred CEEEEEeCCCeEEEEEcCCCceE-----EEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEeC-CCC
Q psy2110 207 TLLAVGCNDGRIVLWDFLTRGIA-----KIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGECEQKYRF-PSP 279 (622)
Q Consensus 207 ~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~-~~~ 279 (622)
.+|+.+.. +.|+.+++...... ..+......+.+++|++++..|+.+. ..+.|..+++........+.. ...
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555543 47888888754321 12222234578999999776666555 467899999987655444432 257
Q ss_pred eEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec---CCeEEEEeCCCccEEE
Q psy2110 280 ILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS---KGKVLVLSCPALELKA 356 (622)
Q Consensus 280 v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~ 356 (622)
...+++++++..++++....+.|.++++..................++++|++..|+.+.. .+.|..+++.... ..
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence 8899999988888888888889999998754332222222245678999997666655543 3688888876432 22
Q ss_pred EE-ecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEee
Q psy2110 357 SF-KASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGS 434 (622)
Q Consensus 357 ~~-~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 434 (622)
.+ ...-.....+++++++..|.++. ..+.|.++++... .....+... . ....+++ ++.+|+.+.
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---------~~~~~~~~~-~--~P~gi~~--d~~~lyva~ 225 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---------GRRKVLEGL-Q--YPFAVTS--YGKNLYYTD 225 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---------EEEEEEECC-C--SEEEEEE--ETTEEEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---------ceEEEecCC-C--CceEEEE--eCCEEEEEE
Confidence 22 23334678999999887776664 4678999998731 111111111 1 1123444 466777776
Q ss_pred CCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC
Q psy2110 435 ARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP 472 (622)
Q Consensus 435 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 472 (622)
...+.|+++|..+++.+..+..........+++.|++.
T Consensus 226 ~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 226 WKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 65789999999999988888654322267888888865
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.32 E-value=2.7e-10 Score=110.75 Aligned_cols=299 Identities=11% Similarity=0.083 Sum_probs=189.0
Q ss_pred EEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEE
Q psy2110 87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIV 166 (622)
Q Consensus 87 ~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~ 166 (622)
..+..++. |.+++.+ +.|..|| .+++.+..+..+...+ .++...+++. |..++.+ |.
T Consensus 25 ~~~d~~g~-l~v~t~~-~~l~~~d-~~g~~~~~~~~~~~~~-----------------~~~~~~~~g~-l~v~t~~--l~ 81 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSN-KNLYAIN-TDGSVKWFFKSGEIIE-----------------CRPSIGKDGT-IYFGSDK--VY 81 (330)
T ss_dssp CEECTTSC-EECSSTT-TTTEEEC-TTSCEEESSCGGGEEE-----------------ECCEETTTTE-ECCSSCE--EE
T ss_pred ceEccCCe-EEEEcCC-CEEEEEC-CCCcEEEEEecCCCcc-----------------cceEEecCCc-EEEecCc--EE
Confidence 45555665 4455544 7899999 8888766554433322 4666777775 4445444 88
Q ss_pred EEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcC
Q psy2110 167 LWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSR 246 (622)
Q Consensus 167 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 246 (622)
.+|. +++....+...... .....+. +..+.+++.++.+..+|.. ++.......+...+.++...+
T Consensus 82 ~~d~-~g~~~~~~~~~~~~-----------~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~ 146 (330)
T 3hxj_A 82 AINP-DGTEKWRFDTKKAI-----------VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE 146 (330)
T ss_dssp EECC-CGGGGGGSCC----------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT
T ss_pred EECC-CCcEEEEEECCCCc-----------ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC
Confidence 8885 55554443322110 1112222 4567788888999999988 777766666666677778877
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEE
Q psy2110 247 NGYKIISASTDNNVCIWDVLTGECEQKYRF-PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIV 325 (622)
Q Consensus 247 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 325 (622)
++. |+.++.++.|..+|.. ++....+.. ...+.++...+++. ++ +++ +.+..+| .++............+.+
T Consensus 147 ~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~ 219 (330)
T 3hxj_A 147 DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTR 219 (330)
T ss_dssp TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EE-EES--SSEEEEC-TTSCEEEEECCSSCCCSC
T ss_pred CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EE-EEe--CEEEEEC-CCCcEEEEEccCCcceec
Confidence 776 6667778999999998 877766663 34456666766665 33 333 7888898 665555555555566777
Q ss_pred EEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCc
Q psy2110 326 ASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEP 405 (622)
Q Consensus 326 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 405 (622)
+..+++|. |.+++.++.+..++ .+++.+..+......+.++.+.+++. |.+++.++.|..+|... ..
T Consensus 220 ~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g----------~~ 286 (330)
T 3hxj_A 220 PAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINPDG----------TE 286 (330)
T ss_dssp CEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECTTS----------CE
T ss_pred eEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECCCC----------cE
Confidence 77887775 45566677888887 46666666665555555666766665 77788888899988531 12
Q ss_pred ceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC
Q psy2110 406 IQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV 447 (622)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~ 447 (622)
+..+.. ....+.++...++|++. .++. +|.+++.....
T Consensus 287 ~~~~~~--~~~~~~~~~~d~~g~l~-~gt~-~G~~~~~~~~~ 324 (330)
T 3hxj_A 287 KWNFET--GSWIIATPVIDENGTIY-FGTR-NGKFYALFNLE 324 (330)
T ss_dssp EEEEEC--SSCCCSCCEECTTCCEE-EECT-TSCEEEEEC--
T ss_pred EEEEEc--CCccccceEEcCCCEEE-EEcC-CCeEEEEeccc
Confidence 222221 22334456777787755 4554 78888877543
No 240
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=3.6e-07 Score=99.73 Aligned_cols=449 Identities=11% Similarity=0.048 Sum_probs=243.9
Q ss_pred cceEEEEccCCcEEEeccCCCeEEEEecccccee---------------------cccCceEEeecCCceEEEeechhhh
Q psy2110 3 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------------ASRGNCLLVNTGDRLIRVYNHQEVL 61 (622)
Q Consensus 3 ~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------------~~~~~~l~~~~~d~~i~~w~~~~~~ 61 (622)
.|.++...++|.+.+ |..++-|..++....++. ......|.+++.. -+.+|+.....
T Consensus 164 ~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~ 241 (781)
T 3v9f_A 164 QTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTET 241 (781)
T ss_dssp CEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTE
T ss_pred ceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCc
Confidence 477888888887666 444445777776553221 0112233344444 46667754321
Q ss_pred hcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccc
Q psy2110 62 NAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCI 141 (622)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 141 (622)
.......... ........+.++...++|.+.+ |+.. +-|.+++..++........+-..+. .......-..
T Consensus 242 ~~~~~~~~~~----~~~l~~~~i~~i~~d~~g~lWi-gt~~-~Gl~~~~~~~~~~~~~~~~~f~~~~---~~~~~~~l~~ 312 (781)
T 3v9f_A 242 FTNFHNNPGN----IHGALSSYIFSIKQLKDNKLWI-ATEL-NGIMILDLQQNQFLLPEQIRFEFIR---EGDNNYSLSN 312 (781)
T ss_dssp EEC---------------CCCCEEEEEECTTSEEEE-EESS-SCEEEEETTCC---------CEEEC---BCSSTTSBSS
T ss_pred EEEEEcCCCc----cccccCceEEEEEECCCCCEEE-EeCC-CCeEEECCCCCeeeeeecccccccc---CCCCCCCCCC
Confidence 1000000000 0011234567888888887655 4432 5688899876654322110000000 0000000012
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEE
Q psy2110 142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW 221 (622)
Q Consensus 142 ~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 221 (622)
..|.++...++|. |-.|+.++-|..++...+........... .....+ ....|.++...++|++. .|+.++-|..|
T Consensus 313 ~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~-~~~~~l-~~~~v~~i~~d~~g~lW-igt~~~Gl~~~ 388 (781)
T 3v9f_A 313 ASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ-MNESSL-SNKVVSSVCDDGQGKLW-IGTDGGGINVF 388 (781)
T ss_dssp SCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----C-CCSSCC-SSSCEEEEEECTTSCEE-EEEBSSCEEEE
T ss_pred CeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccc-cccCCC-CCcceEEEEEcCCCCEE-EEeCCCcEEEE
Confidence 2356888888886 55666667788888766533221110000 000000 11358888888888754 56656668889
Q ss_pred EcCCCceEEEe---ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCeEEEEEeCCCCeEEEE
Q psy2110 222 DFLTRGIAKII---SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR---FPSPILKVQFHPRNDHMFLV 295 (622)
Q Consensus 222 d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~ 295 (622)
+..++...... ......|.++...++|. |..|+.++-|..++..+++...... ....|.++...+++. +..
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lwi 465 (781)
T 3v9f_A 389 ENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK--IWI 465 (781)
T ss_dssp ETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE--EEE
T ss_pred ECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC--EEE
Confidence 87654332211 12346789999888876 4556666779999988776543221 235688888877765 333
Q ss_pred eeCCCcEEEEEecCCceeecccC-----CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec----CCCCEE
Q psy2110 296 CPMRHAAVLVDTDGDHQIVPIDE-----DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA----STTAIK 366 (622)
Q Consensus 296 ~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~ 366 (622)
++. +.+..++..+......... ....+.++..+++|.+.+.....| +..|+..+++.. .+.. ....|.
T Consensus 466 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~ 542 (781)
T 3v9f_A 466 GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTIN 542 (781)
T ss_dssp EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEE
T ss_pred EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeE
Confidence 444 5688888876433221111 135688888888887665443355 888998766533 3321 245689
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec--cccceeeeeEEEcCCCCeEEEeeCCCCeEEEEE
Q psy2110 367 SIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD--LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWE 444 (622)
Q Consensus 367 ~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd 444 (622)
++...++|... .++.+|.|..||... ..+..+.. ......+.++...++|++.+++. +| |..++
T Consensus 543 ~i~~d~~g~lW-i~T~~Glv~~~d~~~----------~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~--~G-l~~~~ 608 (781)
T 3v9f_A 543 QIYRSSKGQMW-LATGEGLVCFPSARN----------FDYQVFQRKEGLPNTHIRAISEDKNGNIWASTN--TG-ISCYI 608 (781)
T ss_dssp EEEECTTSCEE-EEETTEEEEESCTTT----------CCCEEECGGGTCSCCCCCEEEECSSSCEEEECS--SC-EEEEE
T ss_pred EEEECCCCCEE-EEECCCceEEECCCC----------CcEEEccccCCCCCceEEEEEECCCCCEEEEcC--Cc-eEEEE
Confidence 99999998854 445566558887753 11222221 11223356778888888665543 44 78888
Q ss_pred CCCCeeEEEEecCCC---C--ceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110 445 KSVGNLVKILHGTKG---E--LLLDVVWHPVRPIIASISSGVVSLWAQN 488 (622)
Q Consensus 445 ~~~~~~~~~~~~~~~---~--~v~~v~~sp~~~~l~s~~dg~v~iw~~~ 488 (622)
..+++. ..+....+ . ...++...++|.+++.+.+| +..+++.
T Consensus 609 ~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G-l~~f~p~ 655 (781)
T 3v9f_A 609 TSKKCF-YTYDHSNNIPQGSFISGCVTKDHNGLIYFGSING-LCFFNPD 655 (781)
T ss_dssp TTTTEE-EEECGGGTCCSSCEEEEEEEECTTSCEEEEETTE-EEEECSC
T ss_pred CCCCce-EEecccCCccccccccCceEECCCCEEEEECCCc-eEEEChh
Confidence 876653 44432221 1 13466778888877766677 4455654
No 241
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=1.1e-06 Score=96.05 Aligned_cols=444 Identities=8% Similarity=-0.017 Sum_probs=247.7
Q ss_pred CcceEEEEccCCcEEEeccCCCeEEEEeccccceec---------------------cc--CceEEeecCCceEEEeech
Q psy2110 2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA---------------------SR--GNCLLVNTGDRLIRVYNHQ 58 (622)
Q Consensus 2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~---------------------~~--~~~l~~~~~d~~i~~w~~~ 58 (622)
..|.++...++|..|-.|+.++-+..||..+.++.. .. ...+-+++..+-+..++..
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~ 145 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIA 145 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETT
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECC
Confidence 358899999988823345666468888876543221 01 2233334423335555543
Q ss_pred hhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCcc
Q psy2110 59 EVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGAL 138 (622)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 138 (622)
........... ... .....+.++...++|.+.+. +.. +-|..||..+++............ .
T Consensus 146 ~~~~~~~~~~~-----~~~-l~~~~i~~i~~d~~g~lwig-t~~-~Gl~~~~~~~~~~~~~~~~~~~~~----------~ 207 (781)
T 3v9f_A 146 TGKFTHYNKST-----VPA-LPSEQTWTATEAEDGKLYIG-HVE-GGLSILSLNDKSVKHFVHDPQNPN----------S 207 (781)
T ss_dssp TTEEEEESTTT-----CTT-CSCCCEEEEEEEETTEEEEE-ETT-TEEEEEETTTTEEEEECC-----------------
T ss_pred CCeEEeeccCc-----ccC-CCccceEEEEECCCCCEEEE-ecC-CCeEEEcCCCCceEeeecCCCCcc----------c
Confidence 21110000000 000 11234567777777776654 333 468899987765433211111000 0
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeE
Q psy2110 139 DCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRI 218 (622)
Q Consensus 139 ~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 218 (622)
-....|.++...+++.+.+. +.+ -+.+||..+++..........+ .......|.++...++|.+ ..|+..+-|
T Consensus 208 l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~----~~l~~~~i~~i~~d~~g~l-Wigt~~~Gl 280 (781)
T 3v9f_A 208 LPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNI----HGALSSYIFSIKQLKDNKL-WIATELNGI 280 (781)
T ss_dssp -CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC---------------CCCCEEEEEECTTSEE-EEEESSSCE
T ss_pred CCCCceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCcc----ccccCceEEEEEECCCCCE-EEEeCCCCe
Confidence 00122468888888875554 444 6888997765433221111000 0001135888888888864 456665668
Q ss_pred EEEEcCCCceEEEec--------------cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---------
Q psy2110 219 VLWDFLTRGIAKIIS--------------AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--------- 275 (622)
Q Consensus 219 ~iwd~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------- 275 (622)
.+++..++....... -....|.++...++|. |..|+.++-|..++..++.......
T Consensus 281 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 359 (781)
T 3v9f_A 281 MILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESS 359 (781)
T ss_dssp EEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSC
T ss_pred EEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCC
Confidence 889987665332111 1245789999988886 5667667779999887665433211
Q ss_pred -CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc---cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110 276 -FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI---DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA 351 (622)
Q Consensus 276 -~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 351 (622)
....|.++...+++. +.+++.++.+..++..+....... ......|.++..+++|.+.+ |+.++-+..++..+
T Consensus 360 l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~ 436 (781)
T 3v9f_A 360 LSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRL 436 (781)
T ss_dssp CSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSS
T ss_pred CCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCC
Confidence 234688888887775 445565666888887643222111 12345678888887776555 66666699999877
Q ss_pred ccEEEEEe--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecc----ccceeeeeEEEcC
Q psy2110 352 LELKASFK--ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL----VNKTMWKKCCFSG 425 (622)
Q Consensus 352 ~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~sp 425 (622)
++...... .....|.++...++|. |.+++. +-|.+|+.... ....+... .....+.+++..+
T Consensus 437 ~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~i~~d~ 504 (781)
T 3v9f_A 437 KKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASK----------KVIHHYDTSNSQLLENFVRSIAQDS 504 (781)
T ss_dssp CEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSS----------SCCEEECTTTSSCSCSCEEEEEECT
T ss_pred CcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCC----------eEEecccCcccccccceeEEEEEcC
Confidence 65433221 2346799999988887 445555 56888887631 11111111 1124466788888
Q ss_pred CCCeEEEeeCCCCeEEEEECCCCeeEEEEecC---CCCceeEEEECCCCCEEEEEeCCcEEEeecCC
Q psy2110 426 DGEYVCAGSARQHALYIWEKSVGNLVKILHGT---KGELLLDVVWHPVRPIIASISSGVVSLWAQNQ 489 (622)
Q Consensus 426 dg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~~ 489 (622)
+|++.+.... +| |+.|+..+++. ..+... ....|.++...++|.+.++...|.+..|+..+
T Consensus 505 ~g~lWigt~~-~G-l~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 505 EGRFWIGTFG-GG-VGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARN 568 (781)
T ss_dssp TCCEEEEESS-SC-EEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTT
T ss_pred CCCEEEEEcC-CC-EEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCC
Confidence 8886655442 34 88899876654 333321 12238899999998866655566558887753
No 242
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.23 E-value=2.1e-08 Score=104.26 Aligned_cols=309 Identities=10% Similarity=0.036 Sum_probs=181.2
Q ss_pred CCEEEEeeC-CCcEEEEec-CCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE
Q psy2110 153 GTLLAVGCN-DGRIVLWDF-LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK 230 (622)
Q Consensus 153 ~~~l~s~~~-dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~ 230 (622)
+..+++++. ++.|.-+|. .+|+.+-.+.............|......+++ .+..+++++.++.+..+|..+++.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666666 788999999 88887765543321100000000000011122 35678888889999999999999887
Q ss_pred EeccCCc----Cee-EEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCCCe-------------------
Q psy2110 231 IISAHMH----PVC-SISWSRNGYKIISAST------DNNVCIWDVLTGECEQKYRFPSPI------------------- 280 (622)
Q Consensus 231 ~~~~~~~----~v~-~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v------------------- 280 (622)
....... .+. +.... ++ .++.++. ++.|..+|..+|+.+..+....+.
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6653210 121 11111 34 5555554 789999999999998887643221
Q ss_pred --------------------EEEEEeCCCCeEEEEeeC-----------C----CcEEEEEecCCceeecccCCC-----
Q psy2110 281 --------------------LKVQFHPRNDHMFLVCPM-----------R----HAAVLVDTDGDHQIVPIDEDS----- 320 (622)
Q Consensus 281 --------------------~~~~~~~~~~~~~~~~~~-----------~----~~i~~~d~~~~~~~~~~~~~~----- 320 (622)
..+++.+....+++..+. + +.+..+|..+++.+..+....
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 124566665544444321 1 358889998887776554321
Q ss_pred ----CceEEEEEeeCCC---EEEEEecCCeEEEEeCCCccEEEEEecCC-------------CCE---------------
Q psy2110 321 ----DLSIVASFDRRGQ---HVVTGNSKGKVLVLSCPALELKASFKAST-------------TAI--------------- 365 (622)
Q Consensus 321 ----~~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~i--------------- 365 (622)
.....+....+|+ .++.++.+|.++++|..+++.+..+.... .++
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 377 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN 377 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceE
Confidence 1111122334674 57788899999999999999887765322 111
Q ss_pred -----------EEEEEcCCCCEEEEEeC-------------------------------------CCcEEEEeccccccc
Q psy2110 366 -----------KSIEFARRGNCLLVNTG-------------------------------------DRLIRVYNHQEVLNA 397 (622)
Q Consensus 366 -----------~~~~~s~~~~~l~~~~~-------------------------------------d~~i~i~d~~~~~~~ 397 (622)
..++++|+..+|++.+. ++.|..||+.+
T Consensus 378 ~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t---- 453 (571)
T 2ad6_A 378 ICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT---- 453 (571)
T ss_dssp ESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT----
T ss_pred ECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC----
Confidence 24578888777777643 35566666652
Q ss_pred CCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEE
Q psy2110 398 GKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASI 477 (622)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 477 (622)
.+.+-++.... ......+...+..++.++. ++.|+.+|.++|+.+..+.......-.-+.+..+++.++.+
T Consensus 454 -----G~~~W~~~~~~---~~~~~~~~t~gg~v~~g~~-dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 454 -----GKAKWTKWEKF---AAWGGTLYTKGGLVWYATL-DGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp -----CCEEEEEEESS---CCCSBCEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred -----CCEEEEecCCC---CccceeEEECCCEEEEEcC-CCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEE
Confidence 22222222111 1111122334667777776 89999999999999988875543212224455666654444
Q ss_pred e
Q psy2110 478 S 478 (622)
Q Consensus 478 ~ 478 (622)
.
T Consensus 525 ~ 525 (571)
T 2ad6_A 525 M 525 (571)
T ss_dssp E
T ss_pred E
Confidence 3
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.21 E-value=3.1e-09 Score=97.21 Aligned_cols=194 Identities=9% Similarity=0.007 Sum_probs=141.3
Q ss_pred eEEEEcCCCCEEEEec-CCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE-eeCC
Q psy2110 85 KKCCFSGDGEYVCAGS-ARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV-GCND 162 (622)
Q Consensus 85 ~~~~~sp~~~~l~~~~-~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~~~d 162 (622)
..++|+|++...++.+ ..++.|.++|+.+++.+..+.-.....- ..+++. +..|+. .-.+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fg----------------eGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFG----------------EGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCE----------------EEEEEE--TTEEEEEETTC
T ss_pred ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcce----------------EEEEEe--CCEEEEEEecC
Confidence 4689999875555544 2347999999999999988764332220 144444 545544 4467
Q ss_pred CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC-----c
Q psy2110 163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM-----H 237 (622)
Q Consensus 163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~ 237 (622)
+.+.++|..+++.+..+... .+. ...+++||+.|+++..++.|.++|..+.+....+.-.. .
T Consensus 86 ~~v~viD~~t~~v~~~i~~g-~~~------------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~ 152 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ-MKD------------GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVI 152 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC-SSS------------CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred CEEEEEECCCCcEEEEEECC-CCC------------eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccc
Confidence 89999999998888776543 111 12355678877777778999999999988887776321 2
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--------------CCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110 238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP--------------SPILKVQFHPRNDHMFLVCPMRHAAV 303 (622)
Q Consensus 238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~~~~~~~~~i~ 303 (622)
.++.+.|. +|...+....++.|.+.|..+++.+..+... .....++|+|+++.+++++.....++
T Consensus 153 ~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~ 231 (266)
T 2iwa_A 153 RLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF 231 (266)
T ss_dssp CEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred cceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence 46788888 6754444445789999999999999998753 35689999999999999999999999
Q ss_pred EEEecCC
Q psy2110 304 LVDTDGD 310 (622)
Q Consensus 304 ~~d~~~~ 310 (622)
..++...
T Consensus 232 ~i~l~~~ 238 (266)
T 2iwa_A 232 EIKLHLV 238 (266)
T ss_dssp EEEEEEC
T ss_pred EEEEecc
Confidence 9888653
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.20 E-value=6e-08 Score=90.80 Aligned_cols=217 Identities=9% Similarity=0.003 Sum_probs=141.7
Q ss_pred eEEEEcCCCCEEEEe-eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEE-eCCCeEEEEE
Q psy2110 145 VTCAFNKRGTLLAVG-CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWD 222 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~iwd 222 (622)
..++|++++..|+.+ ..++.|..++...+.....+... ......+++++++..|+.+ ...+.|.+++
T Consensus 39 ~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-----------~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~ 107 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-----------LGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-----------CCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC-----------CCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence 589999976655554 45688999998765432222111 0236789999976655555 4567899999
Q ss_pred cCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeC
Q psy2110 223 FLTRGIAKIISAHMHPVCSISWSRNGYKIISAST---DNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPM 298 (622)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~ 298 (622)
+........+.........++++|++..|+.+.. .+.|..+++.......... .......+++++++..++++...
T Consensus 108 ~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 108 MDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred cCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECC
Confidence 8654332223222246789999997666666654 3678888876433222222 23467899999998888888888
Q ss_pred CCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCccEEEEEecCC-CCEEEEEEcCCCC
Q psy2110 299 RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALELKASFKAST-TAIKSIEFARRGN 375 (622)
Q Consensus 299 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~ 375 (622)
.+.|..++............ ......++.. +..++.+. ..+.|..+|..+++.+..+.... .....+++.|++.
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 89999999875433322222 2333455554 45555544 56899999999999888886443 2466788888764
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.20 E-value=8.5e-09 Score=94.29 Aligned_cols=206 Identities=9% Similarity=0.086 Sum_probs=143.4
Q ss_pred eEEEeccCCc--CeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110 228 IAKIISAHMH--PVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV 303 (622)
Q Consensus 228 ~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~ 303 (622)
.+.++. |.. ....+.|++++..+++.+. ++.|+++|+.+++.+..+..+.......+..+++.++++.-.++.+.
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~ 89 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGF 89 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEE
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEE
Confidence 444553 433 3579999998754444443 57999999999999998875544333334444667888888899999
Q ss_pred EEEecCCceeecccCC-CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-----CCEEEEEEcCCCCEE
Q psy2110 304 LVDTDGDHQIVPIDED-SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-----TAIKSIEFARRGNCL 377 (622)
Q Consensus 304 ~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l 377 (622)
++|..+.+.+..+... .. ...++++|+.++++..++.|.++|..+.+.+..+.... ..++.+.|. +|..+
T Consensus 90 viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ly 165 (266)
T 2iwa_A 90 IYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVW 165 (266)
T ss_dssp EEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence 9999988877776543 22 23466788888777788999999999999888877322 246788888 67544
Q ss_pred EEEeCCCcEEEEecccccccCCCCCCCcceeeecc--c---------cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110 378 LVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL--V---------NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS 446 (622)
Q Consensus 378 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~ 446 (622)
+....++.|.+.|..+ .+.+..+... . .......++|+|+++.+++++.....|++.++.
T Consensus 166 vn~~~~~~V~vID~~t---------g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 166 ANIWQTDCIARISAKD---------GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEETTSSEEEEEETTT---------CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EecCCCCeEEEEECCC---------CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 4444578999999983 3344444321 0 112346789999998877776657788888865
Q ss_pred C
Q psy2110 447 V 447 (622)
Q Consensus 447 ~ 447 (622)
.
T Consensus 237 ~ 237 (266)
T 2iwa_A 237 L 237 (266)
T ss_dssp E
T ss_pred c
Confidence 4
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.18 E-value=2.7e-08 Score=105.79 Aligned_cols=308 Identities=14% Similarity=0.154 Sum_probs=184.7
Q ss_pred CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII 232 (622)
Q Consensus 153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~ 232 (622)
+..|++++.++.|..+|..+|+.+-.+.............+......+++ .+..+++++.++.|..+|..+++.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 45677777788999999999988766654322111000000000011122 2457888888999999999999998877
Q ss_pred ccCC----cCee-EEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCC--CC--------------------
Q psy2110 233 SAHM----HPVC-SISWSRNGYKIISAST------DNNVCIWDVLTGECEQKYRFP--SP-------------------- 279 (622)
Q Consensus 233 ~~~~----~~v~-~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~--~~-------------------- 279 (622)
.... ..+. ..... ++ .++.+.. ++.|+.+|..+|+.+..+... .+
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 6421 1111 11111 34 4555433 589999999999998887631 11
Q ss_pred ----------eEEEEEeCCCCeEEEEeeCCC-------------------cEEEEEecCCceeecccCC--C-------C
Q psy2110 280 ----------ILKVQFHPRNDHMFLVCPMRH-------------------AAVLVDTDGDHQIVPIDED--S-------D 321 (622)
Q Consensus 280 ----------v~~~~~~~~~~~~~~~~~~~~-------------------~i~~~d~~~~~~~~~~~~~--~-------~ 321 (622)
...+++.|+... ++++..++ .+..+|..+++.+..+... . .
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDL-LYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeeCCCCccccceEEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 113677777664 44444443 4888999888877665532 1 1
Q ss_pred ceEEEEEeeCCC---EEEEEecCCeEEEEeCCCccEEEEEecCCC------------CE---------------------
Q psy2110 322 LSIVASFDRRGQ---HVVTGNSKGKVLVLSCPALELKASFKASTT------------AI--------------------- 365 (622)
Q Consensus 322 ~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------~i--------------------- 365 (622)
......+..+|+ .++.++.+|.++++|..+|+++........ ++
T Consensus 301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~ 380 (668)
T 1kv9_A 301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA 380 (668)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccc
Confidence 222233344665 688899999999999999998855442210 00
Q ss_pred ---EEEEEcCCCCEEEEEe------------------------------------CCCcEEEEecccccccCCCCCCCcc
Q psy2110 366 ---KSIEFARRGNCLLVNT------------------------------------GDRLIRVYNHQEVLNAGKDGDPEPI 406 (622)
Q Consensus 366 ---~~~~~s~~~~~l~~~~------------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~ 406 (622)
..++++|+...+++.. .++.|..||+.+ .+.+
T Consensus 381 ~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t---------G~~~ 451 (668)
T 1kv9_A 381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK---------QKAA 451 (668)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT---------TEEE
T ss_pred cCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC---------CcEE
Confidence 1257777766665432 125566677652 2222
Q ss_pred eeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-EEEEEe
Q psy2110 407 QKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-IIASIS 478 (622)
Q Consensus 407 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~ 478 (622)
-..... .......+...|.+|++++. ++.|+.||..+|+.+..+....+-.-.-+.+..+|+ +++.+.
T Consensus 452 W~~~~~---~~~~~~~~~t~gg~vf~g~~-dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 452 WKVPYP---THWNGGTLSTAGNLVFQGTA-AGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEEES---SSCCCCEEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEccCC---CCCcCceeEeCCCEEEEECC-cccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 222211 11112244557788888876 999999999999999888765432113345555666 444443
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.16 E-value=3e-08 Score=102.89 Aligned_cols=306 Identities=11% Similarity=0.079 Sum_probs=177.4
Q ss_pred CCEEEEeeC-CCcEEEEec-CCcccccccccccCCCcccccccccceEEEEECCCCCE----EEEEeCCCeEEEEEcCCC
Q psy2110 153 GTLLAVGCN-DGRIVLWDF-LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL----LAVGCNDGRIVLWDFLTR 226 (622)
Q Consensus 153 ~~~l~s~~~-dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~----l~~~~~dg~i~iwd~~~~ 226 (622)
+..|++++. ++.|.-+|. .+|+.+-.+.............|......++++|.+.. |++++.++.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446666666 788999999 88887766544322110000000000122455443334 788888999999999999
Q ss_pred ceEEEeccCCc----Cee-EEEEcCCCCEEEEEe------CCCcEEEEECCCCcEEEEEeCCCCe---------------
Q psy2110 227 GIAKIISAHMH----PVC-SISWSRNGYKIISAS------TDNNVCIWDVLTGECEQKYRFPSPI--------------- 280 (622)
Q Consensus 227 ~~~~~~~~~~~----~v~-~~~~s~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~v--------------- 280 (622)
+.+........ .+. ..... ++ .++.++ .++.|+.+|..+|+.+-.+....+.
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 98877653220 121 11121 44 455554 3789999999999998887743322
Q ss_pred ------------------------EEEEEeCCCCeEEEEeeC---------------CCcEEEEEecCCceeecccCCCC
Q psy2110 281 ------------------------LKVQFHPRNDHMFLVCPM---------------RHAAVLVDTDGDHQIVPIDEDSD 321 (622)
Q Consensus 281 ------------------------~~~~~~~~~~~~~~~~~~---------------~~~i~~~d~~~~~~~~~~~~~~~ 321 (622)
..+++.+....+++..+. ...+..+|..+++.+..+.....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 124555665544443332 14788899998877765543221
Q ss_pred ---------ceEEEEEe-eCC---CEEEEEecCCeEEEEeCCCccEEEEEecCC-------------CCE----------
Q psy2110 322 ---------LSIVASFD-RRG---QHVVTGNSKGKVLVLSCPALELKASFKAST-------------TAI---------- 365 (622)
Q Consensus 322 ---------~~~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~i---------- 365 (622)
...-+... .+| +.++.++.+|.++++|..+++++....... .++
T Consensus 300 d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 379 (599)
T 1w6s_A 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD 379 (599)
T ss_dssp CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCC
Confidence 11112222 467 467778999999999999999887765221 111
Q ss_pred ----------------EEEEEcCCCCEEEEEeCC---------------------------------------CcEEEEe
Q psy2110 366 ----------------KSIEFARRGNCLLVNTGD---------------------------------------RLIRVYN 390 (622)
Q Consensus 366 ----------------~~~~~s~~~~~l~~~~~d---------------------------------------~~i~i~d 390 (622)
..++++|+..++++...+ +.|..||
T Consensus 380 ~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D 459 (599)
T 1w6s_A 380 HLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN 459 (599)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred CCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEE
Confidence 245778877776665432 3344444
Q ss_pred cccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110 391 HQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPV 470 (622)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~ 470 (622)
+.+ .+.+-..... .....-.+...|..|+.++. |+.|+.||.++|+.+-.++...+....-+.|..+
T Consensus 460 ~~t---------G~~~W~~~~~---~~~~~g~~~tagg~vf~gt~-dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~ 526 (599)
T 1w6s_A 460 AIT---------GDYKWEKMER---FAVWGGTMATAGDLVFYGTL-DGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHK 526 (599)
T ss_dssp TTT---------CCEEEEEEES---SCCCSBCEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CCC---------CCEEeEecCC---CCccCcceEecCCEEEEECC-CCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeC
Confidence 431 1111111100 00000112235677777776 8999999999999998887654332233555556
Q ss_pred CCE
Q psy2110 471 RPI 473 (622)
Q Consensus 471 ~~~ 473 (622)
|+.
T Consensus 527 G~q 529 (599)
T 1w6s_A 527 GTQ 529 (599)
T ss_dssp TEE
T ss_pred CEE
Confidence 653
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=6e-08 Score=103.12 Aligned_cols=282 Identities=12% Similarity=0.073 Sum_probs=176.8
Q ss_pred CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCC
Q psy2110 93 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT 172 (622)
Q Consensus 93 ~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 172 (622)
+..|++++.+ +.|+.+|..+|+.+..+........ .....|......+++ .+..|++++.|+.|..+|..+
T Consensus 66 ~g~vyv~~~~-~~v~AlD~~tG~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t 136 (668)
T 1kv9_A 66 DGVIYTSMSW-SRVIAVDAASGKELWRYDPEVAKVK------ARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKT 136 (668)
T ss_dssp TTEEEEEEGG-GEEEEEETTTCCEEEEECCCCCGGG------GGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTT
T ss_pred CCEEEEECCC-CeEEEEECCCChhceEECCCCCccc------cccccccCCccceEE--ECCEEEEEcCCCEEEEEECCC
Confidence 4455555544 8999999999999988865432210 000000000012222 355788888899999999999
Q ss_pred cccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC------CCeEEEEEcCCCceEEEeccCC----------
Q psy2110 173 RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN------DGRIVLWDFLTRGIAKIISAHM---------- 236 (622)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~---------- 236 (622)
|+.+-.+........ ..... ..+ +. + ..++++.. +|.|+.+|..+++.+..+....
T Consensus 137 G~~~W~~~~~~~~~~-~~~~~-~P~----v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~ 208 (668)
T 1kv9_A 137 GKAIWSQQTTDPAKP-YSITG-APR----VV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHP 208 (668)
T ss_dssp CCEEEEEECSCTTSS-CBCCS-CCE----EE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH
T ss_pred CCEeeeeccCCCCCc-ceecC-CCE----EE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccc
Confidence 988766654211100 00000 011 11 3 34555543 5899999999999988775210
Q ss_pred ---------------------cCeeEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCcEEEEEeC
Q psy2110 237 ---------------------HPVCSISWSRNGYKIISASTDN-------------------NVCIWDVLTGECEQKYRF 276 (622)
Q Consensus 237 ---------------------~~v~~~~~s~~~~~l~s~~~d~-------------------~i~iwd~~~~~~~~~~~~ 276 (622)
.....+++.++...++.+..++ .|..+|..+|+.+..++.
T Consensus 209 ~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~ 288 (668)
T 1kv9_A 209 ELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV 288 (668)
T ss_dssp HHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred ccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec
Confidence 0112468888888888887665 399999999999888773
Q ss_pred C----------CCeEEEEEeCCCC--eEEEEeeCCCcEEEEEecCCceeecccCCC------------Cc----------
Q psy2110 277 P----------SPILKVQFHPRND--HMFLVCPMRHAAVLVDTDGDHQIVPIDEDS------------DL---------- 322 (622)
Q Consensus 277 ~----------~~v~~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------~~---------- 322 (622)
. .+.....+..+++ .+++.++.++.++++|..+++.+....... ..
T Consensus 289 ~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 368 (668)
T 1kv9_A 289 TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEK 368 (668)
T ss_dssp STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSS
T ss_pred CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccC
Confidence 2 2333333333553 368888899999999998887663221110 00
Q ss_pred --------------eEEEEEeeCCCEEEEEe------------------------------------cCCeEEEEeCCCc
Q psy2110 323 --------------SIVASFDRRGQHVVTGN------------------------------------SKGKVLVLSCPAL 352 (622)
Q Consensus 323 --------------~~~~~~~~~~~~l~~~~------------------------------------~dg~i~i~d~~~~ 352 (622)
-..++++|+...+++.. .+|.|..||+.++
T Consensus 369 ~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG 448 (668)
T 1kv9_A 369 EPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ 448 (668)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT
T ss_pred CeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC
Confidence 01257788776665421 2378999999999
Q ss_pred cEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 353 ELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 353 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
+.+.+...+. ......+...+.++++++.|+.|+.||..
T Consensus 449 ~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 449 KAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred cEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhh
Confidence 9888776543 23333444567788899999999999988
No 249
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.15 E-value=1.3e-05 Score=83.80 Aligned_cols=430 Identities=8% Similarity=-0.038 Sum_probs=229.2
Q ss_pred cceEEEEccCCcEEE-eccCCCeEEEEeccccc---eec--------------ccCceEEeecCCceEEEeechhhhhcC
Q psy2110 3 LSIVASFDRRGQHVV-TGNSKGKVLVLSCPALE---LKA--------------SRGNCLLVNTGDRLIRVYNHQEVLNAG 64 (622)
Q Consensus 3 ~V~~~~fspdg~~la-tg~~dg~v~vwd~~~~~---~~~--------------~~~~~l~~~~~d~~i~~w~~~~~~~~~ 64 (622)
.+.+++|++.+..|. +=...+.|..++..... ... ..+++.++-...+.|.+.+..+...
T Consensus 41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-- 118 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-- 118 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE--
Confidence 457899998666555 43446788888876542 110 1234445555667777777653211
Q ss_pred CCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCC-CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccc
Q psy2110 65 KDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR-QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISL 143 (622)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 143 (622)
+.+. ...-.....+++.|.+.+|..+... .+.|...+++...........- ..
T Consensus 119 --------~~l~-~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~-----------------~~ 172 (619)
T 3s94_A 119 --------KVLF-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI-----------------YW 172 (619)
T ss_dssp --------EEEE-CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC-----------------SS
T ss_pred --------EEEE-eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC-----------------CC
Confidence 0110 0112234568999876666555422 2566666665322222222111 12
Q ss_pred eeEEEEcCCCCEEEEee-CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110 144 AVTCAFNKRGTLLAVGC-NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD 222 (622)
Q Consensus 144 v~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd 222 (622)
...+++++++..|+.+. ..+.|...++............. .....+++..+ .+.++-...+.|...|
T Consensus 173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~-----------~~P~gi~~~~~-~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL-----------PHPFALTLFED-ILYWTDWSTHSILACN 240 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------------CCCEEESSS-EEEEECTTTCSEEEEE
T ss_pred CcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCC-----------CCceEEEEeCC-EEEEecCCCCEEEEEE
Confidence 25899999877666554 45678888876533222221110 11235566554 3333333467788888
Q ss_pred cCCCceEEEeccCC-------------------------cCeeEEEE-----------cC-------CC--------CEE
Q psy2110 223 FLTRGIAKIISAHM-------------------------HPVCSISW-----------SR-------NG--------YKI 251 (622)
Q Consensus 223 ~~~~~~~~~~~~~~-------------------------~~v~~~~~-----------s~-------~~--------~~l 251 (622)
..+++....+.... +....+++ .| |+ .+|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 76654332221100 01111111 11 11 123
Q ss_pred EEEeCCCcEEEEECCCCcEEE-EEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEE
Q psy2110 252 ISASTDNNVCIWDVLTGECEQ-KYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASF 328 (622)
Q Consensus 252 ~s~~~d~~i~iwd~~~~~~~~-~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 328 (622)
+.+. .+.|+..++....... .+. .-..+.+++|.+.+..++++-...+.|+.+++........+...-.....+++
T Consensus 321 l~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv 399 (619)
T 3s94_A 321 LLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399 (619)
T ss_dssp EEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence 3332 3456666766543211 111 22457789999988878888777888998888764333333333345668899
Q ss_pred eeCCC-EEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecccccccCCCCCCCc
Q psy2110 329 DRRGQ-HVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG--DRLIRVYNHQEVLNAGKDGDPEP 405 (622)
Q Consensus 329 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~ 405 (622)
+..+. .+++-...+.|.+.++........+...-...++|++.|...+|..+.. ...|...+++. ..
T Consensus 400 D~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG--------~~-- 469 (619)
T 3s94_A 400 DWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG--------SD-- 469 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS--------CS--
T ss_pred ecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC--------Cc--
Confidence 87554 5555556789999998754433333334456789999997555555543 35676666652 11
Q ss_pred ceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe--CCcEE
Q psy2110 406 IQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS--SGVVS 483 (622)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--dg~v~ 483 (622)
...+.. ..-.....++++++++.|+.+....+.|..+++........+.+.... ...++...+ .|+.+. .+.|.
T Consensus 470 ~~~l~~-~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~-P~glav~~~--~ly~tD~~~~~I~ 545 (619)
T 3s94_A 470 RVVLVN-TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPH-IFGFTLLGD--YVYWTDWQRRSIE 545 (619)
T ss_dssp CEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCS-SCCEEEETT--EEEEECTTSSCEE
T ss_pred cEEEEe-CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCC-cEEEEEECC--EEEEeecCCCeEE
Confidence 111111 011223568999988888888776788999998654433333332222 445665433 555555 45555
Q ss_pred Eeec
Q psy2110 484 LWAQ 487 (622)
Q Consensus 484 iw~~ 487 (622)
.-+.
T Consensus 546 ~~~k 549 (619)
T 3s94_A 546 RVHK 549 (619)
T ss_dssp EEES
T ss_pred EEEc
Confidence 4444
No 250
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.12 E-value=1.1e-10 Score=115.07 Aligned_cols=205 Identities=11% Similarity=0.099 Sum_probs=114.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCC-ceE-
Q psy2110 247 NGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSD-LSI- 324 (622)
Q Consensus 247 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~- 324 (622)
++..+++++.|+.|+.||..+|+.+..+.. ..+.+..+..++. ++++++.++.++.||..+++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999988876 5555555555554 566778899999999987766544433211 000
Q ss_pred EEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCC
Q psy2110 325 VASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPE 404 (622)
Q Consensus 325 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 404 (622)
...+. .+..+++++.++.++.||..+|+.+..+..+. ...++|++..+++++.++.|+.||..+ .+
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~t---------G~ 151 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKT---------RE 151 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSS---------SS
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCC---------CC
Confidence 01111 34567888889999999999999888776553 234567888899999999999999873 22
Q ss_pred cceeeeccccceeeeeEEEcCCC---CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCE
Q psy2110 405 PIQKLQDLVNKTMWKKCCFSGDG---EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPI 473 (622)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~spdg---~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 473 (622)
.+..+... .....++++++ ..+++++. ++.|+.||..+|+.+-.+.... ..+....+++++..
T Consensus 152 ~~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~-dg~v~a~d~~tG~~~W~~~~~~-pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 152 LRWNATYF----DYAASLPEDDVDYKMSHFVSNG-DGLVVTVDSESGDVLWIQNYAS-PVVAFYVWQREGLR 217 (369)
T ss_dssp CCCEEEEE----EECCBCCCCCTTCCCCEEEEET-SCEEEEECTTTCCEEEEEECSS-CEEEEEECTTSSCE
T ss_pred EEEeEecc----cccCccccCCccccceEEEECC-CCEEEEEECCCCcEEEEecCCC-ceEEEEEecCCceE
Confidence 22222211 11223444432 45666776 8999999999999887766433 22344556666653
No 251
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.11 E-value=1.7e-11 Score=120.84 Aligned_cols=204 Identities=14% Similarity=0.075 Sum_probs=114.7
Q ss_pred CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110 152 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI 231 (622)
Q Consensus 152 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~ 231 (622)
++.++++++.||.|+.||..+|+.+..+.. .. +.+..+..++..+++++.++.|+.||..+++.+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~-----------~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~ 74 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DP-----------VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK 74 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CC-----------SCCCC-----CCEEECTTTCCEEEC-----CCSEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CC-----------ceecceEcCCCEEEEeCCCCEEEEEECCCCceeee
Confidence 577899999999999999999988776654 11 12223445677787778999999999999988766
Q ss_pred eccCCcC-ee-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC
Q psy2110 232 ISAHMHP-VC-SISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG 309 (622)
Q Consensus 232 ~~~~~~~-v~-~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 309 (622)
+..+... +. +..+. ++..+++++.++.|+.||..+|+.+..+..... ..++|++. .+++++.++.++.||.++
T Consensus 75 ~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~-~v~~~~~dg~v~a~d~~t 149 (369)
T 2hz6_A 75 LPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTS-LLYLGRTEYTITMYDTKT 149 (369)
T ss_dssp CSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSS
T ss_pred eeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCC-EEEEEecCCEEEEEECCC
Confidence 6543211 11 11111 345678888899999999999998877764432 34556554 566777889999999988
Q ss_pred CceeecccCCCCceEEEEEeeCC---CEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCC
Q psy2110 310 DHQIVPIDEDSDLSIVASFDRRG---QHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGN 375 (622)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 375 (622)
++.+..+.... ....+++.+. ..+++++.+|.++.||..+++.+.++......+....++++|.
T Consensus 150 G~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 150 RELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp SSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred CCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 76654433211 1112233322 5677788999999999999998887774433333334455554
No 252
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.07 E-value=3.1e-05 Score=81.09 Aligned_cols=427 Identities=9% Similarity=-0.010 Sum_probs=232.5
Q ss_pred cceEEEEccCCcEE-EeccCCCeEEEEecccccee----------------cccCceEEeecCCceEEEeechhhhhcCC
Q psy2110 3 LSIVASFDRRGQHV-VTGNSKGKVLVLSCPALELK----------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGK 65 (622)
Q Consensus 3 ~V~~~~fspdg~~l-atg~~dg~v~vwd~~~~~~~----------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 65 (622)
.+.+++|++++..| .+-..++.|..++....... ...+++..+-...+.|.+.++.+...
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--- 114 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--- 114 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC---
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE---
Confidence 45689999865555 45456788888887653211 01233444555566677766643211
Q ss_pred CCCCccchhhhhhccccceeEEEEcCCCCEEEEecC-CCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccce
Q psy2110 66 DGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA-RQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLA 144 (622)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v 144 (622)
..+. ...-.....+++.|...+|..... ..+.|...++...........- . ..
T Consensus 115 -------~~l~-~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~-~-----------------~P 168 (628)
T 4a0p_A 115 -------QVLV-WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNV-G-----------------RA 168 (628)
T ss_dssp -------EEEE-CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSC-S-----------------SE
T ss_pred -------EEEE-eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCC-C-----------------Cc
Confidence 0110 012233467999986666655442 1367877777644333323221 1 22
Q ss_pred eEEEEcCCCCEEEEee-CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110 145 VTCAFNKRGTLLAVGC-NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF 223 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~ 223 (622)
..+++++++..|+.+. ..+.|...++..... ..+.... .....+++.. +.++++-...+.|...|.
T Consensus 169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l-----------~~P~glav~~-~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDL-----------PHPFGLTQYQ-DYIYWTDWSRRSIERANK 235 (628)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECC-----------SCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred ceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccC-----------CCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence 5999999877776664 457888888865433 2222111 1245666654 344444445778888886
Q ss_pred CCCceEEEeccCC------------------------cCeeEEEE----------c-------CCC-------CEEEEEe
Q psy2110 224 LTRGIAKIISAHM------------------------HPVCSISW----------S-------RNG-------YKIISAS 255 (622)
Q Consensus 224 ~~~~~~~~~~~~~------------------------~~v~~~~~----------s-------~~~-------~~l~s~~ 255 (622)
.+++....+.... +....++. . +|+ .+|+.+.
T Consensus 236 ~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~ 315 (628)
T 4a0p_A 236 TSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ 315 (628)
T ss_dssp TTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE
T ss_pred CCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec
Confidence 6654332221110 01111111 1 111 1222222
Q ss_pred CCCcEEEEECCCCcE-EEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC------CCCceEEE
Q psy2110 256 TDNNVCIWDVLTGEC-EQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE------DSDLSIVA 326 (622)
Q Consensus 256 ~d~~i~iwd~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~ 326 (622)
...|+-..+..... ...+. .-..+.++.|.+.+..++.+-...+.|+.+++........+.. .......+
T Consensus 316 -~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~gl 394 (628)
T 4a0p_A 316 -KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDL 394 (628)
T ss_dssp -TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEE
T ss_pred -cceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceE
Confidence 23344333332211 01111 2245788999998888888877788888888765432222221 23457789
Q ss_pred EEeeCCCEEE-EEecCCeEEEEeCCCccEEEEE-ecCCCCEEEEEEcCC-CCEEEEEeCCC--cEEEEecccccccCCCC
Q psy2110 327 SFDRRGQHVV-TGNSKGKVLVLSCPALELKASF-KASTTAIKSIEFARR-GNCLLVNTGDR--LIRVYNHQEVLNAGKDG 401 (622)
Q Consensus 327 ~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~s~~-~~~l~~~~~d~--~i~i~d~~~~~~~~~~~ 401 (622)
+++..++.|+ +-+..+.|.+.++. ++....+ ...-...++|++.|. |.++.+-.... .|...+++.
T Consensus 395 AvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG-------- 465 (628)
T 4a0p_A 395 SIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG-------- 465 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS--------
T ss_pred EeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC--------
Confidence 9998866554 55667889999986 4544443 334566899999994 54444433222 566666552
Q ss_pred CCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe-cCCCCceeEEEECCCCCEEEEEe--
Q psy2110 402 DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH-GTKGELLLDVVWHPVRPIIASIS-- 478 (622)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~~-- 478 (622)
. ....+... .-.....++++++++.|+.+....+.|...++... ..+.+. ..... ...++... ..|+.+.
T Consensus 466 ~--~~~~l~~~-~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~-~r~~~~~~~~~~-P~glav~~--~~ly~tD~~ 538 (628)
T 4a0p_A 466 T--EREVLFFS-GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA-NRIVLEDSNILQ-PVGLTVFE--NWLYWIDKQ 538 (628)
T ss_dssp C--SCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSC-EEEEEEET--TEEEEEETT
T ss_pred C--CcEEEEec-cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC-ceEEEEcCCCCC-cEEEEEEC--CEEEEEECC
Confidence 1 11111110 11122568999998888888776789999998644 344444 33333 67777654 3444444
Q ss_pred CCcEEEeecC
Q psy2110 479 SGVVSLWAQN 488 (622)
Q Consensus 479 dg~v~iw~~~ 488 (622)
.+.|...+..
T Consensus 539 ~~~i~~~~k~ 548 (628)
T 4a0p_A 539 QQMIEKIDMT 548 (628)
T ss_dssp TTEEEEEETT
T ss_pred CCeEEEEECc
Confidence 4556555543
No 253
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.04 E-value=3.8e-05 Score=80.37 Aligned_cols=366 Identities=9% Similarity=-0.062 Sum_probs=193.2
Q ss_pred ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCce-EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE-Eee
Q psy2110 83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL-VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGC 160 (622)
Q Consensus 83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~ 160 (622)
....++|++.+..|..+....+.|..+++..... ...+...... +..+++.+.+..|+ +-.
T Consensus 41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~-----------------P~GlAvD~~~~~ly~~d~ 103 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLS-----------------PDGLACDWLGEKLYWTDS 103 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSC-----------------EEEEEEETTTTEEEEEET
T ss_pred ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCC-----------------cCeEEEEecCCEEEEEeC
Confidence 3457899998887777665557898888875432 2222221112 24899998665555 445
Q ss_pred CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC--CCeEEEEEcCCCceEEEeccCCcC
Q psy2110 161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN--DGRIVLWDFLTRGIAKIISAHMHP 238 (622)
Q Consensus 161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~ 238 (622)
..+.|.+.++........+.... .....+++.|.+..|+.+.. .+.|...++............-..
T Consensus 104 ~~~~I~v~~~dG~~~~~l~~~~l-----------~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~ 172 (619)
T 3s94_A 104 ETNRIEVSNLDGSLRKVLFWQEL-----------DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW 172 (619)
T ss_dssp TTTEEEEEETTSCSCEEEECSSC-----------SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSS
T ss_pred CCCEEEEEECCCCCEEEEEeCCC-----------CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCC
Confidence 67889999987543222221111 12467899997666666553 356777776543333333333456
Q ss_pred eeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec-
Q psy2110 239 VCSISWSRNGYKIISAST-DNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP- 315 (622)
Q Consensus 239 v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~- 315 (622)
.+.|++++++..|+.+.. .+.|...|+.......... ......++++..+ .++++-...+.|...|..++.....
T Consensus 173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred CcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEE
Confidence 789999987777766643 4678888876533222111 0111123333322 3333333344444444322110000
Q ss_pred --------------------------------------------------------------------------------
Q psy2110 316 -------------------------------------------------------------------------------- 315 (622)
Q Consensus 316 -------------------------------------------------------------------------------- 315 (622)
T Consensus 251 ~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~ 330 (619)
T 3s94_A 251 HSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRR 330 (619)
T ss_dssp CSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEE
T ss_pred ecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEE
Confidence
Q ss_pred ------------cc-CCCCceEEEEEeeCCCEEEEE-ecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE-
Q psy2110 316 ------------ID-EDSDLSIVASFDRRGQHVVTG-NSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN- 380 (622)
Q Consensus 316 ------------~~-~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~- 380 (622)
+. ..-.....++|++.+..|+.+ ...+.|+.+++........+...-....++++.+.+..|+.+
T Consensus 331 i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD 410 (619)
T 3s94_A 331 ISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 410 (619)
T ss_dssp EESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred EecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEe
Confidence 00 001112344454433333322 234455555554322222222222456688888755545544
Q ss_pred eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC-CCCeEEEEECCCCeeEEEEecCCC
Q psy2110 381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA-RQHALYIWEKSVGNLVKILHGTKG 459 (622)
Q Consensus 381 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 459 (622)
+..+.|.+.++.. . ....+... .-.....+++.|...+|+.+.. ..+.|+..++............-.
T Consensus 411 ~~~~~I~v~~~~G--------~--~~~~l~~~-~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~ 479 (619)
T 3s94_A 411 TGTDRIEVTRLNG--------T--MRKILISE-DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLG 479 (619)
T ss_dssp TTTTEEEEEETTS--------C--SCEEEECT-TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred CCCCcEEEEeCCC--------C--eEEEEEEC-CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCC
Confidence 5567898888873 1 11122111 1122357899997656655543 236787777764333322333333
Q ss_pred CceeEEEECCCCCEEEEEe--CCcEEEeecCCc
Q psy2110 460 ELLLDVVWHPVRPIIASIS--SGVVSLWAQNQV 490 (622)
Q Consensus 460 ~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~~~ 490 (622)
. .+.++++++...|+.+. .+.|...++++.
T Consensus 480 ~-P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 480 W-PNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp C-EEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred C-CeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 3 88999999888888776 577888888654
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.04 E-value=4.7e-07 Score=94.22 Aligned_cols=307 Identities=12% Similarity=0.130 Sum_probs=177.9
Q ss_pred CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII 232 (622)
Q Consensus 153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~ 232 (622)
+..+++++.++.|.-+|..+|+.+-.+......... ..|......+++ .+..+++++.++.|..+|..+++.+...
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~--~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIR--PCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCC--CSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccc--cccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence 335555555445888999999877666543321110 000000011122 3457788888999999999999998776
Q ss_pred ccCCc----Cee-EEEEcC---CCC-EEEEEe------CCCcEEEEECCCCcEEEEEeCCCCe-----------------
Q psy2110 233 SAHMH----PVC-SISWSR---NGY-KIISAS------TDNNVCIWDVLTGECEQKYRFPSPI----------------- 280 (622)
Q Consensus 233 ~~~~~----~v~-~~~~s~---~~~-~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~v----------------- 280 (622)
..... .+. +..... +|+ .+++++ .++.|+.+|..+|+.+-........
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 53321 111 111111 233 555554 3789999999999988766532100
Q ss_pred -------------------------EEEEEeCCCCeEEEEee------------C-------C----CcEEEEEecCCce
Q psy2110 281 -------------------------LKVQFHPRNDHMFLVCP------------M-------R----HAAVLVDTDGDHQ 312 (622)
Q Consensus 281 -------------------------~~~~~~~~~~~~~~~~~------------~-------~----~~i~~~d~~~~~~ 312 (622)
..+++.|....+++..+ . + +.+..+|..+++.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 12455566554444442 1 2 5788999988887
Q ss_pred eecccC--CC--------CceEEEEEe-eCCC---EEEEEecCCeEEEEeCCCccEEEEEecCCC--CE-----------
Q psy2110 313 IVPIDE--DS--------DLSIVASFD-RRGQ---HVVTGNSKGKVLVLSCPALELKASFKASTT--AI----------- 365 (622)
Q Consensus 313 ~~~~~~--~~--------~~~~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i----------- 365 (622)
+..+.. |. ..+ -+... .+|+ .++.++.+|.++++|..+++++..+..... ..
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEe
Confidence 766543 21 111 11221 4674 788899999999999999998877654320 00
Q ss_pred --------------------------------EEEEEcCCCCEEEEEeC-------------------------------
Q psy2110 366 --------------------------------KSIEFARRGNCLLVNTG------------------------------- 382 (622)
Q Consensus 366 --------------------------------~~~~~s~~~~~l~~~~~------------------------------- 382 (622)
..++++|+...+++...
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 13466666555555432
Q ss_pred --CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCC
Q psy2110 383 --DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE 460 (622)
Q Consensus 383 --d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 460 (622)
++.|..||+.+ .+.+-+..... ....-.....|.+++.++. |+.++.||.++|+.+-.++...+-
T Consensus 463 ~~~G~l~A~D~~t---------G~~~W~~~~~~---~~~~g~~~tagglvf~g~~-dg~l~A~D~~tG~~lW~~~~~~g~ 529 (582)
T 1flg_A 463 DHVGSLRAMDPVS---------GKVVWEHKEHL---PLWAGVLATAGNLVFTGTG-DGYFKAFDAKSGKELWKFQTGSGI 529 (582)
T ss_dssp SCSEEEEEECTTT---------CCEEEEEEESS---CCCSCCEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCcceEEEEECCC---------CCEEEEecCCC---CCcccceEeCCCEEEEECC-CCcEEEEECCCCCEEEEecCCCCc
Confidence 35566666652 12222222111 1111112224667778876 899999999999999988876542
Q ss_pred ceeEEEECCCCC-EEEEE
Q psy2110 461 LLLDVVWHPVRP-IIASI 477 (622)
Q Consensus 461 ~v~~v~~sp~~~-~l~s~ 477 (622)
.-.-+.|..+|+ ++++.
T Consensus 530 ~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 530 VSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp CSCCEEEEETTEEEEEEE
T ss_pred ccCceEEEECCEEEEEEE
Confidence 122366767776 44433
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.04 E-value=1.9e-07 Score=97.14 Aligned_cols=283 Identities=13% Similarity=0.095 Sum_probs=171.2
Q ss_pred CCEEEEecCCCCeEEEEEc-CCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecC
Q psy2110 93 GEYVCAGSARQHALYIWEK-SVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL 171 (622)
Q Consensus 93 ~~~l~~~~~~~~~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 171 (622)
+..|++++..++.|+-+|. .+|+.+..+......-. .....|......++. ++..+++++.|+.|..+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~ 133 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAST------KAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAK 133 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG------GGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccc------cccccccccccccEE--ECCEEEEEeCCCEEEEEECC
Confidence 3445555541378999999 89999988764332100 000000000011222 35678888889999999999
Q ss_pred CcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC------CCeEEEEEcCCCceEEEeccCCcC-------
Q psy2110 172 TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN------DGRIVLWDFLTRGIAKIISAHMHP------- 238 (622)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------- 238 (622)
+|+.+-.......... ..+.. .. ... + ..+++++. ++.|+.+|..+++.+..+......
T Consensus 134 tG~~~W~~~~~~~~~~-~~~~~-~P----~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p 205 (571)
T 2ad6_A 134 TGKINWEVEVCDPKVG-STLTQ-AP----FVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAK 205 (571)
T ss_dssp TCCEEEEEECCCGGGT-CBCCS-CC----EEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCT
T ss_pred CCCEEEEecCCCCCcc-ceecc-CC----EEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCc
Confidence 9987765543221100 00000 01 111 3 35556654 789999999999988776532110
Q ss_pred -------------------------------eeEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCcEE
Q psy2110 239 -------------------------------VCSISWSRNGYKIISASTD----------------NNVCIWDVLTGECE 271 (622)
Q Consensus 239 -------------------------------v~~~~~s~~~~~l~s~~~d----------------~~i~iwd~~~~~~~ 271 (622)
...+++.++...++.+..+ +.|..+|..+|+.+
T Consensus 206 ~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~ 285 (571)
T 2ad6_A 206 DFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK 285 (571)
T ss_dssp TTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE
T ss_pred ccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEE
Confidence 0235666666667666532 25999999999998
Q ss_pred EEEeCCC----------CeEEEEEeCCCC--eEEEEeeCCCcEEEEEecCCceeecccCCC-------------Cce---
Q psy2110 272 QKYRFPS----------PILKVQFHPRND--HMFLVCPMRHAAVLVDTDGDHQIVPIDEDS-------------DLS--- 323 (622)
Q Consensus 272 ~~~~~~~----------~v~~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------~~~--- 323 (622)
..++... ...-+...++++ .+++.+..++.++++|..+++.+....... ..+
T Consensus 286 W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~ 365 (571)
T 2ad6_A 286 WGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDP 365 (571)
T ss_dssp EEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECG
T ss_pred EEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceeccc
Confidence 8876321 111122224564 466778889999999998887665433211 001
Q ss_pred -----------------------EEEEEeeCCCEEEEEe-------------------------------------cCCe
Q psy2110 324 -----------------------IVASFDRRGQHVVTGN-------------------------------------SKGK 343 (622)
Q Consensus 324 -----------------------~~~~~~~~~~~l~~~~-------------------------------------~dg~ 343 (622)
..++++|+..++++.. .+|.
T Consensus 366 ~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~ 445 (571)
T 2ad6_A 366 EFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQ 445 (571)
T ss_dssp GGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEE
T ss_pred ccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCe
Confidence 2357888877777653 3478
Q ss_pred EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
|..||+.+++.+.++.... .+.+..+...+..+++++.|+.|+.+|.+
T Consensus 446 l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~ 493 (571)
T 2ad6_A 446 IRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp EEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred EEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECC
Confidence 9999999999888776432 22222233345677788999999999988
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.03 E-value=5.2e-08 Score=87.77 Aligned_cols=193 Identities=9% Similarity=0.078 Sum_probs=135.2
Q ss_pred eEEEeccCCc--CeeEEEEcCCCCEEEEEeCCC--cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110 228 IAKIISAHMH--PVCSISWSRNGYKIISASTDN--NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV 303 (622)
Q Consensus 228 ~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~ 303 (622)
.++++ .|.. ....+.|+ ++.++.+.+.+| .|+++|+.+++.+..+..+.........++++.++++.-.++.+.
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence 34455 3443 34789998 676666776665 899999999999999987776665555556778888888899999
Q ss_pred EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-----CCEEEEEEcCCCCEEE
Q psy2110 304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-----TAIKSIEFARRGNCLL 378 (622)
Q Consensus 304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~ 378 (622)
++|..+.+.+..+...... ..++++++.|+....++.|.++|..+.+.+.++.... ..++.+.|. +|+.++
T Consensus 111 v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya 186 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA 186 (262)
T ss_dssp EEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence 9999998888777654322 3344678888777778899999999999888877421 345667887 676444
Q ss_pred EEeCCCcEEEEecccccccCCCCCCCcceeeec--c--------ccceeeeeEEEcCCCCeEEEeeC
Q psy2110 379 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD--L--------VNKTMWKKCCFSGDGEYVCAGSA 435 (622)
Q Consensus 379 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~spdg~~l~~~~~ 435 (622)
..-.++.|.+.|..+. +.+..+.. . ......+.++|+|+++.|+..+.
T Consensus 187 n~w~~~~I~vIDp~tG---------~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 187 NVWQTNKIVRIDPETG---------KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EETTSSEEEEECTTTC---------BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEccCCeEEEEECCCC---------cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 4445778999998732 22222221 1 11123467899999887777663
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.00 E-value=1.2e-07 Score=91.59 Aligned_cols=242 Identities=8% Similarity=0.018 Sum_probs=152.2
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCC-C---ccc-----ccccccceEEEEECC-CCCEEEEEeC
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP-E---FDG-----ALDCISLAVTCAFNK-RGTLLAVGCN 214 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~-~---~~~-----~~~~~~~v~~~~~s~-~g~~l~~~~~ 214 (622)
.++++.+++++++++..++.|..|+..++... .+...... . ..+ .......+..+++.+ +|+ |+++..
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 47899999998888888899999987765332 22110000 0 000 000112467889998 555 555555
Q ss_pred CCeEEEEEcCCCceEEEecc-----CCcCeeEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCcEE
Q psy2110 215 DGRIVLWDFLTRGIAKIISA-----HMHPVCSISWSR-NGYKIISAST-----------------DNNVCIWDVLTGECE 271 (622)
Q Consensus 215 dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~-~~~~l~s~~~-----------------d~~i~iwd~~~~~~~ 271 (622)
.+.|..++..++... .+.. .......+++.+ +|+..++-.. ++.|..||..+++..
T Consensus 100 ~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 556888887655322 2211 113468899999 9976665432 367889998777654
Q ss_pred EEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc--eeecccCCCCceEEEEEeeCCCEEEEEec---------
Q psy2110 272 QKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH--QIVPIDEDSDLSIVASFDRRGQHVVTGNS--------- 340 (622)
Q Consensus 272 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------- 340 (622)
...........++++|+++.++++-...+.|..+++.... ....+..... ...++++++|+++++...
T Consensus 179 ~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~ 257 (322)
T 2fp8_A 179 LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGR 257 (322)
T ss_dssp EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSC
T ss_pred EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCC
Confidence 4333223456799999998777777778899999987521 1111111122 677899999987776544
Q ss_pred -CCeEEEEeCCCccEEEEEecCC----CCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 341 -KGKVLVLSCPALELKASFKAST----TAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 341 -dg~i~i~d~~~~~~~~~~~~~~----~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
.+.|..+|. .++.+..+.... ..++++++ .+++++++....+.|.++++.
T Consensus 258 ~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 258 VDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred CccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 467888986 477777776442 34666766 355545454567789998876
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.99 E-value=5.7e-08 Score=87.53 Aligned_cols=184 Identities=8% Similarity=0.107 Sum_probs=129.4
Q ss_pred eEEEEcCCCCEEEEecCC-CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe-eCC
Q psy2110 85 KKCCFSGDGEYVCAGSAR-QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG-CND 162 (622)
Q Consensus 85 ~~~~~sp~~~~l~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~d 162 (622)
..+.|+ ++.+..+.+.+ ...|+++|+.+++.+..+....... .....+++..|... -.+
T Consensus 46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F------------------geGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF------------------GEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC------------------EEEEEEETTEEEEEESSS
T ss_pred ceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccc------------------eeEEEEeCCEEEEEEeeC
Confidence 368888 66555555533 2489999999999998887544332 32333345555544 457
Q ss_pred CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccC--C---c
Q psy2110 163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH--M---H 237 (622)
Q Consensus 163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~---~ 237 (622)
+.+.+||..+.+.+..+...... . .+.++++.|+.+..++.|.++|..+.+.+..+.-. . .
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~eG------------~--glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~ 172 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDGEG------------W--GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELP 172 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSSCC------------C--CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECC
T ss_pred CEEEEEECccCcEEEEEECCCCc------------e--EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccc
Confidence 89999999999888877653211 1 23356777777766788999999999888776532 2 3
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-------------CCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110 238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP-------------SPILKVQFHPRNDHMFLVCPMRHAA 302 (622)
Q Consensus 238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~~~~~~~~~~~i 302 (622)
.++.+.|. +|+..+..-.++.|.+.|..+++.+..+... .-.+.++++|+++.++++|-.=..+
T Consensus 173 ~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~ 249 (262)
T 3nol_A 173 ELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKV 249 (262)
T ss_dssp CEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred ccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCce
Confidence 34567886 6765544446789999999999999988742 2458899999999999888544433
No 259
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.98 E-value=3.3e-07 Score=95.08 Aligned_cols=269 Identities=13% Similarity=0.067 Sum_probs=161.9
Q ss_pred EEEcCCCCE----EEEecCCCCeEEEEEcCCCceEEEEeccCc----ceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110 87 CCFSGDGEY----VCAGSARQHALYIWEKSVGNLVKILHGTKG----ELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV 158 (622)
Q Consensus 87 ~~~sp~~~~----l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 158 (622)
++++|.+.. |++++.+ +.|+.+|..+|+.+........ .+. ..... .++ .+++
T Consensus 111 ~av~p~~g~~~~rV~v~t~d-g~l~AlDa~TG~~~W~~~~~~~~~~~~~~----------------ssP~v-~~g-~V~v 171 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLD-GNVAALNAETGETVWKVENSDIKVGSTLT----------------IAPYV-VKD-KVII 171 (599)
T ss_dssp CEEECCCSSSCCEEEEECTT-SEEEEEETTTCCEEEEEECCCGGGTCBCC----------------SCCEE-ETT-EEEE
T ss_pred eEEEecCCcceeEEEEEcCC-CEEEEEECCCCCEEEeecCCCCCccceee----------------cCCEE-ECC-EEEE
Confidence 455544444 7777654 8999999999999887654321 110 01111 134 4555
Q ss_pred ee------CCCcEEEEecCCcccccccccccCCCc------------------------c-cccc-cccce-EEEEECCC
Q psy2110 159 GC------NDGRIVLWDFLTRGIAKIISAHMHPEF------------------------D-GALD-CISLA-VTCAFNKR 205 (622)
Q Consensus 159 ~~------~dg~i~vw~~~~~~~~~~~~~~~~~~~------------------------~-~~~~-~~~~v-~~~~~s~~ 205 (622)
++ .+|.|+.+|..+|+.+-.+........ . .... ....+ ..+++.+.
T Consensus 172 g~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~ 251 (599)
T 1w6s_A 172 GSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG 251 (599)
T ss_dssp CCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT
T ss_pred EecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC
Confidence 44 379999999999987765543221100 0 0000 00000 13466677
Q ss_pred CCEEEEEeCC----------------CeEEEEEcCCCceEEEeccCCc----------CeeEEEEc-CCC---CEEEEEe
Q psy2110 206 GTLLAVGCND----------------GRIVLWDFLTRGIAKIISAHMH----------PVCSISWS-RNG---YKIISAS 255 (622)
Q Consensus 206 g~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~----------~v~~~~~s-~~~---~~l~s~~ 255 (622)
..+++.+..+ +.|..+|..+++.+..++.... ++. +... .+| ..++.++
T Consensus 252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~ 330 (599)
T 1w6s_A 252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD 330 (599)
T ss_dssp TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC
T ss_pred CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC
Confidence 7788877655 3799999999999877764322 111 2222 467 4677788
Q ss_pred CCCcEEEEECCCCcEEEEEeCCC--------------Ce--------------------------EEEEEeCCCCeEEEE
Q psy2110 256 TDNNVCIWDVLTGECEQKYRFPS--------------PI--------------------------LKVQFHPRNDHMFLV 295 (622)
Q Consensus 256 ~d~~i~iwd~~~~~~~~~~~~~~--------------~v--------------------------~~~~~~~~~~~~~~~ 295 (622)
.+|.++++|..+|+.+....... ++ ..++++|+...+++.
T Consensus 331 ~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~ 410 (599)
T 1w6s_A 331 RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMG 410 (599)
T ss_dssp TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEE
T ss_pred CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEe
Confidence 99999999999999887765321 11 135566665543332
Q ss_pred e--------------------------------e------CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEE
Q psy2110 296 C--------------------------------P------MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVT 337 (622)
Q Consensus 296 ~--------------------------------~------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 337 (622)
. + ..+.+..||+.+++.+........ ...-.....+..++.
T Consensus 411 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagg~vf~ 489 (599)
T 1w6s_A 411 INHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA-VWGGTMATAGDLVFY 489 (599)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC-CCSBCEEETTTEEEE
T ss_pred ccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC-ccCcceEecCCEEEE
Confidence 1 1 235677888887766655432211 111122345778888
Q ss_pred EecCCeEEEEeCCCccEEEEEecCCCCE-EEEEEcCCCCE
Q psy2110 338 GNSKGKVLVLSCPALELKASFKASTTAI-KSIEFARRGNC 376 (622)
Q Consensus 338 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i-~~~~~s~~~~~ 376 (622)
++.||.++.||.++++.+.+++.....+ .-+.+..+|+.
T Consensus 490 gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 490 GTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 9999999999999999999887543222 22445566664
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.94 E-value=8.7e-07 Score=84.63 Aligned_cols=222 Identities=12% Similarity=0.054 Sum_probs=140.9
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC--CeEEEEE
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND--GRIVLWD 222 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--g~i~iwd 222 (622)
..++|+++++++++-..++.|..|+.... ....+... ..+..+++.++|+++++.... ..|..++
T Consensus 35 egia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~------------~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 35 ENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVE------------GKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECS------------SEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred ceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCC------------CCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 48999999987777667889999987653 22222111 236789999999966655432 2477777
Q ss_pred cCCCceEEEec-cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEE-------eC-C--CCeEEEEEeCCCC
Q psy2110 223 FLTRGIAKIIS-AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC-EQKY-------RF-P--SPILKVQFHPRND 290 (622)
Q Consensus 223 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-------~~-~--~~v~~~~~~~~~~ 290 (622)
..+++...... ........++..+++..+++-..++.|+++|..+++. +... .. . .....+ +|+++
T Consensus 102 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~ 179 (306)
T 2p4o_A 102 KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN 179 (306)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred CCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence 77776543322 1222335556555554444444578899999876532 1111 00 1 134455 88888
Q ss_pred eEEEEeeCCCcEEEEEecCCcee---ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE--EEecCCCCE
Q psy2110 291 HMFLVCPMRHAAVLVDTDGDHQI---VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA--SFKASTTAI 365 (622)
Q Consensus 291 ~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i 365 (622)
.++++....+.|..+++.....+ ..+.. ......++++++|+++++....+.|.+++.. ++... .+.......
T Consensus 180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p 257 (306)
T 2p4o_A 180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGS 257 (306)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTE
T ss_pred EEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCc
Confidence 88888888899999998742111 11110 1234567899999887777777899999975 65533 333334568
Q ss_pred EEEEEc---CCCCEEEEEeCC
Q psy2110 366 KSIEFA---RRGNCLLVNTGD 383 (622)
Q Consensus 366 ~~~~~s---~~~~~l~~~~~d 383 (622)
++++|. |+++.|++++..
T Consensus 258 ~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 258 TAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EEEEECCSTTTTTEEEEEECT
T ss_pred eEEEEecccCCCCEEEEECCC
Confidence 899998 888888777654
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.90 E-value=5.4e-07 Score=80.54 Aligned_cols=193 Identities=13% Similarity=0.111 Sum_probs=133.2
Q ss_pred eEEEeccCC--cCeeEEEEcCCCCEEEEEeCC--CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110 228 IAKIISAHM--HPVCSISWSRNGYKIISASTD--NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV 303 (622)
Q Consensus 228 ~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~ 303 (622)
.+..+ .|. .....+.|+. +.++.+.+.+ +.|+.+|+.+++.++.+..+.........+.++.++...-.++.+.
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 34444 344 3466899986 5555555554 4899999999999999987776665555556778888888899999
Q ss_pred EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-----CCEEEEEEcCCCCEEE
Q psy2110 304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-----TAIKSIEFARRGNCLL 378 (622)
Q Consensus 304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~ 378 (622)
++|..+.+.+..+...... ..+.++++.|+.+..++.|.++|..+.+.+.++.... ..++.+.|. +|+.++
T Consensus 89 v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya 164 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA 164 (243)
T ss_dssp EEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence 9999998888777654432 2344677777777778899999999999888877432 345677776 565444
Q ss_pred EEeCCCcEEEEecccccccCCCCCCCcceeeec-----------cccceeeeeEEEcCCCCeEEEeeC
Q psy2110 379 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD-----------LVNKTMWKKCCFSGDGEYVCAGSA 435 (622)
Q Consensus 379 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~spdg~~l~~~~~ 435 (622)
..-.+..|.+.|..+. +.+..+.. .......+.++++|+++.|+..+.
T Consensus 165 nvw~s~~I~vIDp~tG---------~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 165 NVWLTSRIARIDPASG---------KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EETTTTEEEEECTTTC---------BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCeEEEEECCCC---------CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 4445778888888742 22222211 011224467899998777766653
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.89 E-value=1.8e-06 Score=82.42 Aligned_cols=226 Identities=9% Similarity=0.001 Sum_probs=137.6
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC--CcEEEEEecCCceee
Q psy2110 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR--HAAVLVDTDGDHQIV 314 (622)
Q Consensus 237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~ 314 (622)
.....++|+++|+.+++-..++.|..||... +....+.....+..+++.++++ ++++.... ..+..++..++....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEE
Confidence 4567899999998666666788999999765 4555555667788999999987 45544332 246666765554322
Q ss_pred ccc-CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE-EEEEe---------cCCCCEEEEEEcCCCCEEEEEe-C
Q psy2110 315 PID-EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL-KASFK---------ASTTAIKSIEFARRGNCLLVNT-G 382 (622)
Q Consensus 315 ~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~---------~~~~~i~~~~~s~~~~~l~~~~-~ 382 (622)
... ........++..+++..+++...++.|+++|..+++. +.... ..-...+.+ +++++.|+++. .
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 111 1122334455555554455544688999999876432 21111 111234555 78887776664 5
Q ss_pred CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEE--EEecCCCC
Q psy2110 383 DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK--ILHGTKGE 460 (622)
Q Consensus 383 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~ 460 (622)
.+.|+.|++... +.......+... .....++++++|++.++... .+.|.+++.. |+... .+......
T Consensus 188 ~~~I~~~~~~~~------g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~-~~~V~~~~~~-G~~~~~~~~~~~~~~ 256 (306)
T 2p4o_A 188 KMLLLRIPVDST------DKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHI-YNSVVRIAPD-RSTTIIAQAEQGVIG 256 (306)
T ss_dssp TTEEEEEEBCTT------SCBCCCEEEEES---CCCSSEEEBTTCCEEEECBT-TCCEEEECTT-CCEEEEECGGGTCTT
T ss_pred CCEEEEEEeCCC------CCCCccEEEecc---CCCCCeEECCCCCEEEEeCC-CCeEEEECCC-CCEEEEeecccccCC
Confidence 778999998731 111111222111 12345799999987665554 7789999975 66533 23322233
Q ss_pred ceeEEEEC---CCCCEEEEEe
Q psy2110 461 LLLDVVWH---PVRPIIASIS 478 (622)
Q Consensus 461 ~v~~v~~s---p~~~~l~s~~ 478 (622)
+++++|. |++..|+.+.
T Consensus 257 -p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 257 -STAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp -EEEEEECCSTTTTTEEEEEE
T ss_pred -ceEEEEecccCCCCEEEEEC
Confidence 8999998 8888776655
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.88 E-value=3e-06 Score=88.13 Aligned_cols=314 Identities=14% Similarity=0.097 Sum_probs=181.1
Q ss_pred CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCc
Q psy2110 94 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR 173 (622)
Q Consensus 94 ~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 173 (622)
..|++++.. +.|+.+|..+|+.+..+........ ...|......+++ .+..++.++.++.|..+|..+|
T Consensus 69 g~vyv~~~~-~~v~AlD~~tG~~~W~~~~~~~~~~--------~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG 137 (582)
T 1flg_A 69 GVIYVTASY-SRLFALDAKTGKRLWTYNHRLPDDI--------RPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTG 137 (582)
T ss_dssp TEEEEEETT-TEEEEEESSSCCEEEEEECCCCTTC--------CCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSC
T ss_pred CEEEEEcCC-CCEEEEECCCCcEEEEEcCCCCccc--------ccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 344444433 3499999999999988865543210 0000000012222 3557888888999999999999
Q ss_pred ccccccccccCCCcccccccccceEEEEEC-CCCC-EEEEEeC------CCeEEEEEcCCCceEEEeccCCcC-------
Q psy2110 174 GIAKIISAHMHPEFDGALDCISLAVTCAFN-KRGT-LLAVGCN------DGRIVLWDFLTRGIAKIISAHMHP------- 238 (622)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~-~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------- 238 (622)
+.+-.......... ..+.. ..+ +.=. .+|+ .+++++. ++.|+.+|..+++.+.........
T Consensus 138 ~~~W~~~~~~~~~~-~~~~~-sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~ 213 (582)
T 1flg_A 138 KVVWKKKFADHGAG-YTMTG-APT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGK 213 (582)
T ss_dssp CEEEEEECSCGGGT-CBCCS-CCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTE
T ss_pred CEEeeecCCCCCcC-ccccc-CCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCc
Confidence 87765543221100 00000 111 1111 1233 5656543 789999999999988765421100
Q ss_pred ----------------------------------eeEEEEcCCCCEEEEEeC--------------------C----CcE
Q psy2110 239 ----------------------------------VCSISWSRNGYKIISAST--------------------D----NNV 260 (622)
Q Consensus 239 ----------------------------------v~~~~~s~~~~~l~s~~~--------------------d----~~i 260 (622)
-..+++.++...++.+.. | +.|
T Consensus 214 ~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v 293 (582)
T 1flg_A 214 DSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQ 293 (582)
T ss_dssp EEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEE
T ss_pred ccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceE
Confidence 013456666677776653 2 579
Q ss_pred EEEECCCCcEEEEEeCC-----------CCeEEEEEe-CCCC--eEEEEeeCCCcEEEEEecCCceeecccCCC------
Q psy2110 261 CIWDVLTGECEQKYRFP-----------SPILKVQFH-PRND--HMFLVCPMRHAAVLVDTDGDHQIVPIDEDS------ 320 (622)
Q Consensus 261 ~iwd~~~~~~~~~~~~~-----------~~v~~~~~~-~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------ 320 (622)
..+|..+|+.+-.++.. .++. +... .+++ .+++.++.++.++++|..+++.+.......
T Consensus 294 ~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~ 372 (582)
T 1flg_A 294 VGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWAS 372 (582)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEE
T ss_pred EEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccc
Confidence 99999999998887632 1111 1221 3554 467788899999999998876654432211
Q ss_pred -------C---------------------c-----------eEEEEEeeCCCEEEEEe----------------------
Q psy2110 321 -------D---------------------L-----------SIVASFDRRGQHVVTGN---------------------- 339 (622)
Q Consensus 321 -------~---------------------~-----------~~~~~~~~~~~~l~~~~---------------------- 339 (622)
. . -..++++|+...+++..
T Consensus 373 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g 452 (582)
T 1flg_A 373 HIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLG 452 (582)
T ss_dssp EECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred cccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceec
Confidence 0 0 01245666655554432
Q ss_pred -----------cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCccee
Q psy2110 340 -----------SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK 408 (622)
Q Consensus 340 -----------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 408 (622)
..|.|..||+.+++.+-+...... +..-.+...+.++++++.|+.++.||.+ ..+.+-+
T Consensus 453 ~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~g~~dg~l~A~D~~---------tG~~lW~ 522 (582)
T 1flg_A 453 MGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLATAGNLVFTGTGDGYFKAFDAK---------SGKELWK 522 (582)
T ss_dssp EEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCEEETTTEEEEECTTSEEEEEETT---------TCCEEEE
T ss_pred cceeecCCCCCCcceEEEEECCCCCEEEEecCCCC-CcccceEeCCCEEEEECCCCcEEEEECC---------CCCEEEE
Confidence 257899999999998877764422 2111122246678889999999999998 3344444
Q ss_pred eeccccceeeeeEEEcCCCC-eEEEee
Q psy2110 409 LQDLVNKTMWKKCCFSGDGE-YVCAGS 434 (622)
Q Consensus 409 ~~~~~~~~~~~~~~~spdg~-~l~~~~ 434 (622)
++.... ....-+.|..+|+ ||++.+
T Consensus 523 ~~~~~g-~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 523 FQTGSG-IVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp EECSSC-CCSCCEEEEETTEEEEEEEE
T ss_pred ecCCCC-cccCceEEEECCEEEEEEEc
Confidence 443211 1112246667776 444433
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.88 E-value=4.3e-07 Score=81.76 Aligned_cols=182 Identities=5% Similarity=-0.053 Sum_probs=129.1
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc
Q psy2110 238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID 317 (622)
Q Consensus 238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 317 (622)
....+.|+ ++.++.+.+.+|.|+++|+.+++.++.+ .+.........++++.++++.-.++.+.++|..+.+.+..+.
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 34688887 4566677777889999999999998888 666665544555677788888889999999999998887776
Q ss_pred CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-----CCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 318 EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-----TAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
..... ..+.++++.|+.+..++.|.++|..+.+.+.++.... ..++.+.|. +|+.++..-.+..|.+.|..
T Consensus 134 ~~~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 134 YSGEG---WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA 209 (268)
T ss_dssp CSSCC---CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred CCCce---eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence 54332 2334678888888888999999999999888877422 245677887 67544444457789999987
Q ss_pred cccccCCCCCCCcceeeecc-----------ccceeeeeEEEcCCCCeEEEee
Q psy2110 393 EVLNAGKDGDPEPIQKLQDL-----------VNKTMWKKCCFSGDGEYVCAGS 434 (622)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~spdg~~l~~~~ 434 (622)
+ .+.+..+... ......+.++++|+++.|+..+
T Consensus 210 T---------G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 210 T---------GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp T---------CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred C---------CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 3 2233332211 1112446789999876665554
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.85 E-value=1.2e-06 Score=78.89 Aligned_cols=192 Identities=10% Similarity=0.107 Sum_probs=129.1
Q ss_pred cEEEEEeCCCC--eEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEE-EEEecCCeEE
Q psy2110 269 ECEQKYRFPSP--ILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHV-VTGNSKGKVL 345 (622)
Q Consensus 269 ~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~ 345 (622)
+.++.+.|... ...+.|+ +..++.+.+.++.++.+|+.+++.+..+ ... ........++++.| +..-.++.+.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEE
T ss_pred EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEE
Confidence 45566666544 4688887 4678888889999999999998777666 322 22222233344444 4445678999
Q ss_pred EEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccce---eeeeEE
Q psy2110 346 VLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT---MWKKCC 422 (622)
Q Consensus 346 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 422 (622)
+||..+.+.+.++...... ..++++++.|+.+..++.|.++|..+ .+.+..+.-..... ..+.+.
T Consensus 120 V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T---------~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSGEG---WGLCYWNGKLVRSDGGTMLTFHEPDG---------FALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EEETTTTEEEEEEECSSCC---CCEEEETTEEEEECSSSEEEEECTTT---------CCEEEEEECEETTEECCCEEEEE
T ss_pred EEECCcCcEEEEEeCCCce---eEEecCCCEEEEECCCCEEEEEcCCC---------CeEEEEEEeCCCCcccccccccE
Confidence 9999999999999864332 23345788888887788999999873 33444443322222 224456
Q ss_pred EcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC------------CCCceeEEEECCCCCEEEEEe
Q psy2110 423 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT------------KGELLLDVVWHPVRPIIASIS 478 (622)
Q Consensus 423 ~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~v~~sp~~~~l~s~~ 478 (622)
|. +|+ |.+.......|.+.|..+|+.+..+... .....+.+||+|+++.|+..+
T Consensus 188 ~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 188 CA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred Ee-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 66 775 5555544779999999999999887642 223478999999877665555
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.84 E-value=3.4e-05 Score=73.70 Aligned_cols=235 Identities=9% Similarity=-0.017 Sum_probs=147.8
Q ss_pred EEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCC----CcEEEEEe-CCCCeE
Q psy2110 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLT----GECEQKYR-FPSPIL 281 (622)
Q Consensus 208 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~----~~~~~~~~-~~~~v~ 281 (622)
+|+.+. ...|+..++.+......+.. .....+++|++.+..|+.+. ..+.|..+++.. ......+. .-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 35689999988766555543 45678999998766665554 457899999876 22222332 224567
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec-C-CeEEEEeCCCccEEEEE-
Q psy2110 282 KVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS-K-GKVLVLSCPALELKASF- 358 (622)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~- 358 (622)
.+++.+.+..++++-...+.|.++++..................++++|.+..|+.... . +.|..+++.. .....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEE
Confidence 89999877778888788889999998765433333333455678999987666655543 2 6888888753 333333
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeecc-ccceeeeeEEEcCCCCeEEEeeCC
Q psy2110 359 KASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVCAGSAR 436 (622)
Q Consensus 359 ~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~ 436 (622)
...-...+.+++++++..|..+. ..+.|..++++. ...+.+... ........+++. +..|+.+...
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg----------~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~ 227 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG----------GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDII 227 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----------CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC----------CceEEEeecCCccCCcEEEEEE--CCEEEEEECC
Confidence 23345678999999877777665 467899999872 111222111 011112345663 3455555555
Q ss_pred CCeEEEEECCCCeeEEEEecC
Q psy2110 437 QHALYIWEKSVGNLVKILHGT 457 (622)
Q Consensus 437 d~~i~iwd~~~~~~~~~~~~~ 457 (622)
.+.|..++..+|+.+..+...
T Consensus 228 ~~~V~~~~~~~g~~~~~i~~~ 248 (316)
T 1ijq_A 228 NEAIFSANRLTGSDVNLLAEN 248 (316)
T ss_dssp TTEEEEEETTTCCCCEEEECS
T ss_pred CCeEEEEeCCCCcceEEEecC
Confidence 789999998888766666543
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.84 E-value=7.5e-06 Score=79.46 Aligned_cols=241 Identities=9% Similarity=-0.022 Sum_probs=148.1
Q ss_pred EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe-eCCCc
Q psy2110 86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGR 164 (622)
Q Consensus 86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~dg~ 164 (622)
|.+..+ ..+|+.+.. +.|+..++........+.....+ ..++|++....|+.+ ...+.
T Consensus 38 C~~~~~-~~~ll~~~~--~~I~~i~~~g~~~~~~~~~~~~~------------------~~l~~d~~~~~ly~~D~~~~~ 96 (349)
T 3v64_C 38 CKALGP-EPVLLFANR--IDIRQVLPHRSEYTLLLNNLENA------------------IALDFHHRRELVFWSDVTLDR 96 (349)
T ss_dssp EEESSS-CCEEEEECB--SCEEEECTTSCCEEEEECSCSCE------------------EEEEEETTTTEEEEEETTTTE
T ss_pred cccccc-CceeEeecc--cceEEEeCCCCeeEEeecCCCce------------------EEEEEeccccEEEEEeccCCc
Confidence 445555 345555442 56888887765554444443333 489999866655544 45678
Q ss_pred EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEE
Q psy2110 165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSIS 243 (622)
Q Consensus 165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 243 (622)
|..+++..+.....+.... .....+++.+.+..| ++-...+.|.+.++........+.........++
T Consensus 97 I~r~~~~g~~~~~~~~~~~-----------~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 97 ILRANLNGSNVEEVVSTGL-----------ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EEEEETTSCSCEEEECSSC-----------SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred eEEEecCCCCceEEEeCCC-----------CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 9889887654332222111 123578888765555 4445567899999875543333434445678999
Q ss_pred EcCCCCEEEEEeC-C-CcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCC
Q psy2110 244 WSRNGYKIISAST-D-NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDS 320 (622)
Q Consensus 244 ~s~~~~~l~s~~~-d-~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 320 (622)
+.|.+..|+.+.. . +.|..+++.......... .-.....++++|++..++++-...+.|..+++........+....
T Consensus 166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~ 245 (349)
T 3v64_C 166 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL 245 (349)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred EecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCC
Confidence 9986666655543 4 678888876543333222 234578999999888888888888899999987654333333333
Q ss_pred CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe
Q psy2110 321 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK 359 (622)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 359 (622)
.....+++ ..+..+++-...+.|..++..+++.+..+.
T Consensus 246 ~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 246 PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 44556666 344455555566777777765665544443
No 268
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.83 E-value=3.9e-06 Score=82.75 Aligned_cols=242 Identities=9% Similarity=-0.021 Sum_probs=150.5
Q ss_pred EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE-eeCCCc
Q psy2110 86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV-GCNDGR 164 (622)
Q Consensus 86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~~~dg~ 164 (622)
|.+..+ ..+|+.+.. +.|+.+++..+.....+.+...+ ..++|.+.+..|+. -...+.
T Consensus 81 C~~~~~-~~~l~~~~~--~~I~~i~~~~~~~~~~~~~~~~~------------------~gl~~d~~~~~ly~~D~~~~~ 139 (386)
T 3v65_B 81 CKALGP-EPVLLFANR--IDIRQVLPHRSEYTLLLNNLENA------------------IALDFHHRRELVFWSDVTLDR 139 (386)
T ss_dssp EEECSS-CCEEEEECB--SCEEEECTTSCCCEEEECSCSCE------------------EEEEEETTTTEEEEEETTTTE
T ss_pred ECCccc-cceeEeecC--ccceeeccCCCcEEEEecCCCcc------------------EEEEEecCCCeEEEEeCCCCc
Confidence 334444 344544442 56888888766555544444433 48999986665554 445678
Q ss_pred EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEE-EEeCCCeEEEEEcCCCceEEEeccCCcCeeEEE
Q psy2110 165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGRIVLWDFLTRGIAKIISAHMHPVCSIS 243 (622)
Q Consensus 165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 243 (622)
|..+++..+.....+.... .....+++.+.+..|+ +-...+.|.+.++........+.........++
T Consensus 140 I~r~~~~g~~~~~~~~~~~-----------~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~gia 208 (386)
T 3v65_B 140 ILRANLNGSNVEEVVSTGL-----------ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 208 (386)
T ss_dssp EEEEETTSCCEEEEECSSC-----------SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEE
T ss_pred EEEEecCCCCcEEEEeCCC-----------CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEE
Confidence 9999887654322222111 1235678887655554 444567888888765443333444445678999
Q ss_pred EcCCCCEEEEEeC-C-CcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCC
Q psy2110 244 WSRNGYKIISAST-D-NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDS 320 (622)
Q Consensus 244 ~s~~~~~l~s~~~-d-~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 320 (622)
+.|.+..|+.+.. . +.|..+++.......... .-.....++++|++..++++-...+.|..+++........+....
T Consensus 209 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~ 288 (386)
T 3v65_B 209 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL 288 (386)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSC
T ss_pred EEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCC
Confidence 9987766665543 3 678888877544433333 234578999999888888888888899999987644333333333
Q ss_pred CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec
Q psy2110 321 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA 360 (622)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 360 (622)
.....+++ ..+..+++....+.|..++..+++.+..+..
T Consensus 289 ~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 289 PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 44566777 4455555656677888888666665555543
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.82 E-value=2.6e-06 Score=76.09 Aligned_cols=193 Identities=10% Similarity=0.119 Sum_probs=128.1
Q ss_pred cEEEEEeCCC--CeEEEEEeCCCCeEEEEeeCC--CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEE-EecCCe
Q psy2110 269 ECEQKYRFPS--PILKVQFHPRNDHMFLVCPMR--HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVT-GNSKGK 343 (622)
Q Consensus 269 ~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~ 343 (622)
+.+..+.|+. -...+.|++ ..++.+.+.. ..++.+|+.+++.+.......... .......++.|+. .-.++.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f-geGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF-GAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC-EEEEEEETTEEEEEESSSSE
T ss_pred EEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc-eeEEEEeCCEEEEEEeeCCE
Confidence 4566666654 466899986 4567776665 489999999988877665443322 2223334555544 456789
Q ss_pred EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccce---eeee
Q psy2110 344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT---MWKK 420 (622)
Q Consensus 344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 420 (622)
+.+||..+.+.+.++...... ..++++++.|+.+..++.|.++|..+ .+.+..+.-..... ..+.
T Consensus 87 v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t---------~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDT---------LQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTT---------CCEEEEEECEETTEECCCEEE
T ss_pred EEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCC---------CeEEEEEEEccCCccccccee
Confidence 999999999999999865433 33445677777776788999999873 33344443322221 2234
Q ss_pred EEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC------------CCCceeEEEECCCCCEEEEEe
Q psy2110 421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT------------KGELLLDVVWHPVRPIIASIS 478 (622)
Q Consensus 421 ~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~v~~sp~~~~l~s~~ 478 (622)
+.+. +|+ |.+.......|.+.|..+|+.+..+... .....+.+||+|+++.|+..+
T Consensus 155 Le~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 155 LEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 4554 665 4444434678999999999999887632 233578999999988776666
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.80 E-value=9e-07 Score=95.67 Aligned_cols=240 Identities=7% Similarity=-0.020 Sum_probs=134.9
Q ss_pred eeEEEEc-CCCCEEEEecCCC----CeEEEEEcCCC-ceEE-EEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110 84 WKKCCFS-GDGEYVCAGSARQ----HALYIWEKSVG-NLVK-ILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL 156 (622)
Q Consensus 84 ~~~~~~s-p~~~~l~~~~~~~----~~i~vwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 156 (622)
+...+|| |||++||.+...+ ..|+++|+.++ +.+. .+.. + ...++|+|||+.|
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~----~----------------~~~~~WspDg~~l 235 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG----T----------------NGEIVWGPDHTSL 235 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE----E----------------CSCCEECSSTTEE
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC----c----------------eeeEEEecCCCEE
Confidence 4468999 9999999765432 35999999988 6321 0111 1 1377999999988
Q ss_pred EEeeCC-----CcEEEEecCCccccc--ccccccCCCcccccccccceEEEEECCCCCEEEEEeC---CCeEEEEEcCCC
Q psy2110 157 AVGCND-----GRIVLWDFLTRGIAK--IISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN---DGRIVLWDFLTR 226 (622)
Q Consensus 157 ~s~~~d-----g~i~vw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---dg~i~iwd~~~~ 226 (622)
+....+ ..|.++++.++.... .+..... .....+.|+|||++|+..+. ...|+++|+.++
T Consensus 236 ~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~----------~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 236 FYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNP----------LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCT----------TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEECCCCCCCEEEEEECCCCchhcEEEEecCCC----------ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 877665 257777877654221 1111100 12467899999998887653 346888898775
Q ss_pred c-eE--EEe-ccCCcCeeEEEEcCCCCEEEEEeC-C----CcEEEEECCCC-cEEE-EEeCCCCeEEEEEeCCCCeEEEE
Q psy2110 227 G-IA--KII-SAHMHPVCSISWSRNGYKIISAST-D----NNVCIWDVLTG-ECEQ-KYRFPSPILKVQFHPRNDHMFLV 295 (622)
Q Consensus 227 ~-~~--~~~-~~~~~~v~~~~~s~~~~~l~s~~~-d----~~i~iwd~~~~-~~~~-~~~~~~~v~~~~~~~~~~~~~~~ 295 (622)
. .. +.+ ........++.|+. |..|+..+. + ..|..+++.++ +... .+.+...+.--.+.+.+..++++
T Consensus 306 ~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~ 384 (751)
T 2xe4_A 306 NAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVA 384 (751)
T ss_dssp TTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEE
T ss_pred CCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEE
Confidence 2 22 333 33445556666554 555554443 3 25777787653 3233 34444333323344456778888
Q ss_pred eeCCCcEE--EEEe-------cCCceeecccCCC-CceEEEEE----eeCCC-EEEEEecC---CeEEEEeCCCccE
Q psy2110 296 CPMRHAAV--LVDT-------DGDHQIVPIDEDS-DLSIVASF----DRRGQ-HVVTGNSK---GKVLVLSCPALEL 354 (622)
Q Consensus 296 ~~~~~~i~--~~d~-------~~~~~~~~~~~~~-~~~~~~~~----~~~~~-~l~~~~~d---g~i~i~d~~~~~~ 354 (622)
...++... ++++ .++.....+.... ..+..+.+ ++++. ++++.+.. ..+..+|+.+++.
T Consensus 385 ~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 385 GRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp EEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred EEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 88777644 5554 2222022222111 11223322 34554 44443332 4677888877653
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.79 E-value=7e-07 Score=95.15 Aligned_cols=271 Identities=11% Similarity=0.060 Sum_probs=153.5
Q ss_pred EEEEcC-CCCEEEEeeCCC-----------cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe
Q psy2110 146 TCAFNK-RGTLLAVGCNDG-----------RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC 213 (622)
Q Consensus 146 ~~~~s~-d~~~l~s~~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 213 (622)
++++.+ ++++++.|+.+. .+.+||..+++............ ....++++..+|+++++|+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~--------~~~~~~~~~~~g~lyv~GG 261 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD--------MFCPGISMDGNGQIVVTGG 261 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC--------CSSCEEEECTTSCEEEECS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC--------CccccccCCCCCCEEEeCC
Confidence 667777 888888887543 58899988875433221111100 1123567789999999988
Q ss_pred C-CCeEEEEEcCCCceEEEeccCCc-CeeEEEEcCCCCEEEEEe-CC-----CcEEEEECCCCcEEEEE-----eCCCCe
Q psy2110 214 N-DGRIVLWDFLTRGIAKIISAHMH-PVCSISWSRNGYKIISAS-TD-----NNVCIWDVLTGECEQKY-----RFPSPI 280 (622)
Q Consensus 214 ~-dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~-~d-----~~i~iwd~~~~~~~~~~-----~~~~~v 280 (622)
. +..+.+||..+.+....-.-+.. .-.+++..++++.++.|+ .+ ..+.+||..+.+....- .....-
T Consensus 262 ~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~ 341 (656)
T 1k3i_A 262 NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD 341 (656)
T ss_dssp SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred CCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc
Confidence 4 46899999987754432221212 123456667899999888 34 46999999887755431 111000
Q ss_pred EEEEEeCCCCeEEEEeeCC---------CcEEEEEecCCceeecccCC---------CCceEEEEEe-eCCCEEEEEecC
Q psy2110 281 LKVQFHPRNDHMFLVCPMR---------HAAVLVDTDGDHQIVPIDED---------SDLSIVASFD-RRGQHVVTGNSK 341 (622)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~---------~~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~l~~~~~d 341 (622)
....+..++. +++.++.+ ..+..||..+.......... ...-.++.+. .++++++.|+.+
T Consensus 342 ~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~ 420 (656)
T 1k3i_A 342 KQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP 420 (656)
T ss_dssp TTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred ccceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCC
Confidence 0011122233 44444333 35677887765422221111 1122334443 367788888754
Q ss_pred C-----------eEEEEeCCCccEEEEE--ecCCCC-EEEEEEcCCCCEEEEEeCC-----------CcEEEEecccccc
Q psy2110 342 G-----------KVLVLSCPALELKASF--KASTTA-IKSIEFARRGNCLLVNTGD-----------RLIRVYNHQEVLN 396 (622)
Q Consensus 342 g-----------~i~i~d~~~~~~~~~~--~~~~~~-i~~~~~s~~~~~l~~~~~d-----------~~i~i~d~~~~~~ 396 (622)
+ .+.+||..+.+..... ..+... -.+++..|+++.+++++.+ ..+.+||....
T Consensus 421 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~-- 498 (656)
T 1k3i_A 421 DYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD-- 498 (656)
T ss_dssp SSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT--
T ss_pred CCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC--
Confidence 2 6888888776654433 222222 2355677899999998754 46889998631
Q ss_pred cCCCCCCCcceeeecccc-ceeeeeEEEcCCCCeEEEeeC
Q psy2110 397 AGKDGDPEPIQKLQDLVN-KTMWKKCCFSGDGEYVCAGSA 435 (622)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~ 435 (622)
....+..... ......+.+.|||+.++.|+.
T Consensus 499 --------~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 499 --------TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp --------EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred --------ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 1111111111 111123467799999999885
No 272
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.79 E-value=4.1e-06 Score=80.65 Aligned_cols=249 Identities=8% Similarity=0.028 Sum_probs=140.6
Q ss_pred eEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecC-----ccccccceeEEEEcC-CCCEEEE
Q psy2110 85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDG-----ALDCISLAVTCAFNK-RGTLLAV 158 (622)
Q Consensus 85 ~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~v~~~~~s~-d~~~l~s 158 (622)
..++++++|+++.++..+ +.|..|+..+++.. .+........ .....+ .......+..+++.+ +++ |+.
T Consensus 22 ~~i~~d~~g~~l~v~~~~-~~i~~~~~~~~~~~-~~~~~~~~~~--~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQD-GRVIKYEGPNSGFV-DFAYASPYWN--KAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp CCEECCTTCSSEEEECTT-SEEEEECCTTTCEE-EEEESCTTCC--HHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred eEEEEcCCCCEEEEEcCC-CeEEEECCCCCceE-EEeccccccc--ccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 468999999877777654 89999988765443 2221100000 000000 000011236899998 555 555
Q ss_pred eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC-CCCEEEEEeC-----------------CCeEEE
Q psy2110 159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGCN-----------------DGRIVL 220 (622)
Q Consensus 159 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-----------------dg~i~i 220 (622)
+...+.|..++..++.. ..+...... ........+++.+ +|++.++-.. .+.|..
T Consensus 97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-TQLATSVDG------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp EETTTEEEEECTTCEEC-EEEESEETT------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred EECCCCEEEEeCCCCEE-EEecccCCC------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 54445588888765532 222111000 0012357899999 9987665432 367888
Q ss_pred EEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEE-eCCCcEEEEECCCC---cEEEEEeCCCCeEEEEEeCCCCeEEEEe
Q psy2110 221 WDFLTRGIAKIISAHMHPVCSISWSRNGYKIISA-STDNNVCIWDVLTG---ECEQKYRFPSPILKVQFHPRNDHMFLVC 296 (622)
Q Consensus 221 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 296 (622)
|+..+++....... ......++++++++.|+.+ ...+.|.+|++... .........+ ...+++.++|. ++++.
T Consensus 170 ~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~ 246 (322)
T 2fp8_A 170 YDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH-FWVSS 246 (322)
T ss_dssp EETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-EEEEE
T ss_pred EeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-EEEEe
Confidence 88776654332222 2345689999999877666 44578999998752 2211112334 78899999987 44444
Q ss_pred eC----------CCcEEEEEecCCceeecccCC----CCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110 297 PM----------RHAAVLVDTDGDHQIVPIDED----SDLSIVASFDRRGQHVVTGNSKGKVLVLSCP 350 (622)
Q Consensus 297 ~~----------~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 350 (622)
.. .+.+..+|.. ++.+..+... ...+..+++ .+++++++....+.|..+++.
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred cCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 33 3557777764 3333333322 133445555 456555555567788888865
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.78 E-value=4.4e-07 Score=96.66 Aligned_cols=231 Identities=10% Similarity=0.075 Sum_probs=131.3
Q ss_pred EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee-CC--
Q psy2110 86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC-ND-- 162 (622)
Q Consensus 86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~d-- 162 (622)
++++.++++.+++|+.++..+.+||..+++-...-..+..... .+++..+++++++.|+ .+
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~----------------~s~~~~~dg~iyv~GG~~~~~ 310 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY----------------QSSATMSDGRVFTIGGSWSGG 310 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS----------------CEEEECTTSCEEEECCCCCSS
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccc----------------cceEEecCCeEEEEeCcccCC
Confidence 4678899999999997667899999987754432211211111 3566778999999988 34
Q ss_pred ---CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC---------CCeEEEEEcCCCceEE
Q psy2110 163 ---GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN---------DGRIVLWDFLTRGIAK 230 (622)
Q Consensus 163 ---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---------dg~i~iwd~~~~~~~~ 230 (622)
..+.+||..++.....-.....+...... ...+..+++.++.|+. ...+..||..+.....
T Consensus 311 ~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-------~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~ 383 (656)
T 1k3i_A 311 VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-------QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK 383 (656)
T ss_dssp SCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-------TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred cccccceEeCCCCCcceeCCCccccccccccc-------cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee
Confidence 56999998876432210000000000000 0112234444444433 3457788887766443
Q ss_pred EeccCCc---------CeeEEEEc-CCCCEEEEEeCCC-----------cEEEEECCCCcEEEEE--eCC-C-CeEEEEE
Q psy2110 231 IISAHMH---------PVCSISWS-RNGYKIISASTDN-----------NVCIWDVLTGECEQKY--RFP-S-PILKVQF 285 (622)
Q Consensus 231 ~~~~~~~---------~v~~~~~s-~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~--~~~-~-~v~~~~~ 285 (622)
....+.. .-.++.|. .+++.++.|+.++ .|.+||..+.+..... ..+ . .-.++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~ 463 (656)
T 1k3i_A 384 SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV 463 (656)
T ss_dssp EEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEE
T ss_pred cCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEE
Confidence 3322211 22344443 3677777777432 5888898887766554 222 2 2234566
Q ss_pred eCCCCeEEEEeeCC-----------CcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEec
Q psy2110 286 HPRNDHMFLVCPMR-----------HAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNS 340 (622)
Q Consensus 286 ~~~~~~~~~~~~~~-----------~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 340 (622)
.|+++ +++.++.+ ..+.+||..+.+- +............+.+.++|+.++.|+.
T Consensus 464 l~~g~-i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 464 LPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CTTSC-EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCC-EEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 67776 56666543 4688999876542 2222222333344556789999999885
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.78 E-value=3.3e-05 Score=73.79 Aligned_cols=225 Identities=10% Similarity=-0.007 Sum_probs=143.0
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC----CceeecccCCCCceEE
Q psy2110 250 KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG----DHQIVPIDEDSDLSIV 325 (622)
Q Consensus 250 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~~~ 325 (622)
+|+.+. ...|+..|+.+.+....+.....+..++|++.+..++++....+.|..+++.+ ......+.........
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 344443 35799999998877766666677899999998888888888889999999876 2222222222234567
Q ss_pred EEEeeCCCEE-EEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEecccccccCCCCC
Q psy2110 326 ASFDRRGQHV-VTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD--RLIRVYNHQEVLNAGKDGD 402 (622)
Q Consensus 326 ~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~ 402 (622)
+++++.+..| ++-...+.|.++++........+.........++++|.+..|+.+... +.|..++++. .
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG--------~ 153 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--------V 153 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--------C
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC--------C
Confidence 8888755544 555667899999987554443344344567899999977766666543 6788887762 1
Q ss_pred CCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec--CCCCceeEEEECCCCCEEEEEe-C
Q psy2110 403 PEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG--TKGELLLDVVWHPVRPIIASIS-S 479 (622)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~s~~-d 479 (622)
....+... .-.....++++|++..|+.+....+.|+.+++........+.. .... ...+++. .+.++++-. .
T Consensus 154 --~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~-P~giav~-~~~ly~~d~~~ 228 (316)
T 1ijq_A 154 --DIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH-PFSLAVF-EDKVFWTDIIN 228 (316)
T ss_dssp --CEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSS-EEEEEEE-TTEEEEEETTT
T ss_pred --CeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCC-cEEEEEE-CCEEEEEECCC
Confidence 11111110 1122357899999888888877678999999875433222332 1223 6778884 333333333 6
Q ss_pred CcEEEeecC
Q psy2110 480 GVVSLWAQN 488 (622)
Q Consensus 480 g~v~iw~~~ 488 (622)
+.|..++..
T Consensus 229 ~~V~~~~~~ 237 (316)
T 1ijq_A 229 EAIFSANRL 237 (316)
T ss_dssp TEEEEEETT
T ss_pred CeEEEEeCC
Confidence 788887753
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.77 E-value=1.6e-05 Score=77.06 Aligned_cols=231 Identities=8% Similarity=-0.016 Sum_probs=146.8
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC
Q psy2110 240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED 319 (622)
Q Consensus 240 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 319 (622)
+|.+..+++ +|+.+ ....|+..++..............+..++|++.+..++++-...+.|..+++............
T Consensus 37 ~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 37 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp CEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred cccccccCc-eeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence 344444433 44444 3456888888777666666656678999999988888888888889999998765433333323
Q ss_pred CCceEEEEEeeCCCEE-EEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC-C-CcEEEEecccccc
Q psy2110 320 SDLSIVASFDRRGQHV-VTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG-D-RLIRVYNHQEVLN 396 (622)
Q Consensus 320 ~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-~~i~i~d~~~~~~ 396 (622)
......+++++.+..| ++-...+.|.+.++........+...-.....++++|.+..|+.+.. . +.|..++++.
T Consensus 115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG--- 191 (349)
T 3v64_C 115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG--- 191 (349)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---
T ss_pred CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC---
Confidence 3345678898755444 55556778999998755433334344456789999997666665543 4 6788888762
Q ss_pred cCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEE
Q psy2110 397 AGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIAS 476 (622)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s 476 (622)
. ....+.. ..-.....++|+|++..|..+....+.|+.+++........+...... ...+++. . ..|+.
T Consensus 192 -----~--~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~-P~giav~-~-~~ly~ 260 (349)
T 3v64_C 192 -----S--GRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH-PFAITVF-E-DSLYW 260 (349)
T ss_dssp -----C--SCEESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSS-EEEEEEE-T-TEEEE
T ss_pred -----C--CcEEEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCC-ceEEEEE-C-CEEEE
Confidence 1 1111110 011123568999988888888776789999998754433334333333 6778883 3 34444
Q ss_pred Ee--CCcEEEee
Q psy2110 477 IS--SGVVSLWA 486 (622)
Q Consensus 477 ~~--dg~v~iw~ 486 (622)
+. .+.|...+
T Consensus 261 td~~~~~V~~~~ 272 (349)
T 3v64_C 261 TDWHTKSINSAN 272 (349)
T ss_dssp EETTTTEEEEEE
T ss_pred ecCCCCeEEEEE
Confidence 44 67777666
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.74 E-value=4.2e-05 Score=75.68 Aligned_cols=243 Identities=8% Similarity=-0.010 Sum_probs=155.8
Q ss_pred EEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCC----cEEEEEe-CCCCeE
Q psy2110 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTG----ECEQKYR-FPSPIL 281 (622)
Q Consensus 208 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~----~~~~~~~-~~~~v~ 281 (622)
+|+.+. ...|+..++........+. ....+..++|++.+..|+.+. ..+.|+.+++... .....+. ......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444443 4788888887765544443 446788999998666666554 4678888988752 2333333 345678
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec--CCeEEEEeCCCccEEEEEe
Q psy2110 282 KVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS--KGKVLVLSCPALELKASFK 359 (622)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~ 359 (622)
.+++.+.+..++++-...+.|.+.++........+.........++++|.+.+|+.... .+.|...++........+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 89999877778888888889999998876554444444455778999997666665542 3689999887544333333
Q ss_pred cCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeecc-ccceeeeeEEEcCCCCeEEEeeCCC
Q psy2110 360 ASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVCAGSARQ 437 (622)
Q Consensus 360 ~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~d 437 (622)
..-...+.|++++++..|+.+. ..+.|..++++. ...+.+... ..-.....+++ ++..|+......
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG----------~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~ 310 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG----------GNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIIN 310 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----------CCCEEEEECSSTTSSEEEEEE--ETTEEEEEESSS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC----------CccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCC
Confidence 3345678999999887777764 467899999862 111111111 01111234455 445565555557
Q ss_pred CeEEEEECCCCeeEEEEecCCCCceeEE
Q psy2110 438 HALYIWEKSVGNLVKILHGTKGELLLDV 465 (622)
Q Consensus 438 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v 465 (622)
+.|+.++..+|+.+..+...... ..++
T Consensus 311 ~~V~~~~~~~G~~~~~i~~~~~~-p~~i 337 (400)
T 3p5b_L 311 EAIFSANRLTGSDVNLLAENLLS-PEDM 337 (400)
T ss_dssp CSEEEEESSSCCCCEEEECSCSC-EEEE
T ss_pred CeEEEEEcCCCCceEEEecCCCC-CceE
Confidence 88999998888877777654433 4444
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.73 E-value=1e-05 Score=79.71 Aligned_cols=224 Identities=8% Similarity=-0.013 Sum_probs=144.6
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEe
Q psy2110 250 KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFD 329 (622)
Q Consensus 250 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 329 (622)
+|+.+. ...|+.+++..............+..++|++.+..++++-...+.|+.+++........+.........++++
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd 167 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD 167 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEE
T ss_pred eeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEE
Confidence 444443 4678889988777666666666789999999888888888888899999987664333333223344568888
Q ss_pred eCCCEE-EEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC-C-CcEEEEecccccccCCCCCCCcc
Q psy2110 330 RRGQHV-VTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG-D-RLIRVYNHQEVLNAGKDGDPEPI 406 (622)
Q Consensus 330 ~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~ 406 (622)
+.+..| ++-...+.|.+.++........+...-.....++++|.+..|+.+.. . +.|+.++++. . ..
T Consensus 168 ~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG--------~--~~ 237 (386)
T 3v65_B 168 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG--------S--GR 237 (386)
T ss_dssp TTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--------C--SC
T ss_pred eCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC--------C--Cc
Confidence 755544 55556678999888755433334444456789999997776666643 3 6788888762 1 11
Q ss_pred eeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEe
Q psy2110 407 QKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLW 485 (622)
Q Consensus 407 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw 485 (622)
..+.. ..-.....++|+|++..|+.+....+.|+.+++........+...... ...+++. .+.++++-. .+.|..+
T Consensus 238 ~~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~-P~giav~-~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 238 RIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH-PFAITVF-EDSLYWTDWHTKSINSA 314 (386)
T ss_dssp EEEEC-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSS-EEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEEE-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCC-ceEEEEE-CCEEEEeeCCCCeEEEE
Confidence 11111 111123568999988888888776889999998754443334333333 6778883 333333333 6777777
Q ss_pred ec
Q psy2110 486 AQ 487 (622)
Q Consensus 486 ~~ 487 (622)
+.
T Consensus 315 ~~ 316 (386)
T 3v65_B 315 NK 316 (386)
T ss_dssp ET
T ss_pred EC
Confidence 63
No 278
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.73 E-value=0.00045 Score=72.30 Aligned_cols=365 Identities=5% Similarity=-0.084 Sum_probs=199.7
Q ss_pred ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE-EeeC
Q psy2110 83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGCN 161 (622)
Q Consensus 83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~ 161 (622)
.+..++|++.+..|..+....+.|+.+++........+....... ..+++.+.+..|+ +-..
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P-----------------~GlAvD~~~~~LY~tD~~ 100 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYP-----------------EGMAVDWLGKNLYWADTG 100 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC-----------------CEEEEETTTTEEEEEETT
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCc-----------------ceEEEEeCCCEEEEEECC
Confidence 356799999888777766556899999887554433333221111 3888887665554 4445
Q ss_pred CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC--CCeEEEEEcCCCceEEEeccCCcCe
Q psy2110 162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN--DGRIVLWDFLTRGIAKIISAHMHPV 239 (622)
Q Consensus 162 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v 239 (622)
.+.|.+.++..... ..+.... ......+++.|....|+.... .+.|...++........+. .-...
T Consensus 101 ~~~I~v~~~dG~~~-~~l~~~~----------l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P 168 (628)
T 4a0p_A 101 TNRIEVSKLDGQHR-QVLVWKD----------LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRA 168 (628)
T ss_dssp TTEEEEEETTSTTC-EEEECSS----------CCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSE
T ss_pred CCEEEEEecCCCcE-EEEEeCC----------CCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCc
Confidence 67888888765432 2221110 123578999996666666553 5678888876544333333 44567
Q ss_pred eEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc--
Q psy2110 240 CSISWSRNGYKIISAST-DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI-- 316 (622)
Q Consensus 240 ~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-- 316 (622)
..|++++++..|+.+.. .+.|...|+................++++.. ..++++-...+.|...|..++.....+
T Consensus 169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQNRTIIQG 246 (628)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred ceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCCCceEEEec
Confidence 89999998777776654 5678888887544322222223344566543 345555444555555553222100000
Q ss_pred -----------c--------------------------------------------------------------------
Q psy2110 317 -----------D-------------------------------------------------------------------- 317 (622)
Q Consensus 317 -----------~-------------------------------------------------------------------- 317 (622)
.
T Consensus 247 ~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~ 326 (628)
T 4a0p_A 247 HLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDE 326 (628)
T ss_dssp SCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCT
T ss_pred CCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEeccc
Confidence 0
Q ss_pred ----------CCCCceEEEEEeeCCCEEEEE-ecCCeEEEEeCCCccEEEEEec------CCCCEEEEEEcCCCCEEEEE
Q psy2110 318 ----------EDSDLSIVASFDRRGQHVVTG-NSKGKVLVLSCPALELKASFKA------STTAIKSIEFARRGNCLLVN 380 (622)
Q Consensus 318 ----------~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~ 380 (622)
..-..+..+.|++....|+.+ ...+.|+.++.........+.. ......++++...++.|..+
T Consensus 327 ~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~t 406 (628)
T 4a0p_A 327 QQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWT 406 (628)
T ss_dssp TCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEE
T ss_pred ccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEE
Confidence 000112233333332222222 1223344444332211111111 12357789998887766544
Q ss_pred -eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC--eEEEEECCCCeeEEEEecC
Q psy2110 381 -TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH--ALYIWEKSVGNLVKILHGT 457 (622)
Q Consensus 381 -~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~ 457 (622)
+..+.|.+.+++. . ....+... .-.....+++.|...+|+....... .|...++............
T Consensus 407 d~~~~~I~v~~~~G--------~--~~~~l~~~-~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~ 475 (628)
T 4a0p_A 407 CEATNVINVTRLDG--------R--SVGVVLKG-EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSG 475 (628)
T ss_dssp ETTTTEEEEEETTS--------C--EEEEEEEC-TTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSS
T ss_pred cCCCCEEEEEECCC--------C--eEEEEEeC-CCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEecc
Confidence 5577888888762 1 11122111 1123467899995555554433233 5777777643333333323
Q ss_pred CCCceeEEEECCCCCEEEEEe--CCcEEEeecCCc
Q psy2110 458 KGELLLDVVWHPVRPIIASIS--SGVVSLWAQNQV 490 (622)
Q Consensus 458 ~~~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~~~ 490 (622)
-.. .+.+++.+....|+.+. .+.|...++++.
T Consensus 476 l~~-P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 476 LSK-PIALALDSRLGKLFWADSDLRRIESSDLSGA 509 (628)
T ss_dssp CSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCC-ccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 333 79999999988888776 578888888754
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=7.1e-06 Score=82.05 Aligned_cols=242 Identities=11% Similarity=0.080 Sum_probs=142.8
Q ss_pred CeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC----cEEEEEecCCce
Q psy2110 238 PVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH----AAVLVDTDGDHQ 312 (622)
Q Consensus 238 ~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~i~~~d~~~~~~ 312 (622)
....++++| ++..|+.+...+.|+.+|+.+++.............++++++++.++++...++ .+..++......
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 457899998 455676666558899999988776666555667889999999987777765433 233344332211
Q ss_pred -eecccCCCCceEEEEEee-CCCEEEEEecCCeEEEEeCCCccEEEEEec-CCCCEEEEEEcCCCCEEEEE-eCCCcEEE
Q psy2110 313 -IVPIDEDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALELKASFKA-STTAIKSIEFARRGNCLLVN-TGDRLIRV 388 (622)
Q Consensus 313 -~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~-~~d~~i~i 388 (622)
...+. .......++++| +|.++++-...+.|..++...+........ ....-+.++|+|+|++|+++ ...+.|+.
T Consensus 218 ~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 218 VITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp SEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 01111 123345678999 677777766788999999887654332222 22346789999999966555 45778999
Q ss_pred EecccccccCCCCCCCcceeeecc--------------ccceeeeeEEEc--------CCCCeEEEeeCCCCeEEEEECC
Q psy2110 389 YNHQEVLNAGKDGDPEPIQKLQDL--------------VNKTMWKKCCFS--------GDGEYVCAGSARQHALYIWEKS 446 (622)
Q Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~s--------pdg~~l~~~~~~d~~i~iwd~~ 446 (622)
++.+... +.......+... .-..+...++.. ++|.+.++-. ..+.|+.++ .
T Consensus 297 ~~~d~~~-----~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~-~n~~I~~i~-~ 369 (430)
T 3tc9_A 297 SDYDWKT-----KRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDR-ENHCIRILT-P 369 (430)
T ss_dssp EEEETTT-----TEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEG-GGTEEEEEC-T
T ss_pred EeCCccc-----ccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEEC-CCcEEEEEC-C
Confidence 8876210 000001111100 000111134443 3455444444 378899998 4
Q ss_pred CCeeEEEEec----C----CC--------CceeEEEECCCCCEEEEEe--CCcEEEeec
Q psy2110 447 VGNLVKILHG----T----KG--------ELLLDVVWHPVRPIIASIS--SGVVSLWAQ 487 (622)
Q Consensus 447 ~~~~~~~~~~----~----~~--------~~v~~v~~sp~~~~l~s~~--dg~v~iw~~ 487 (622)
+|+....... . .+ .....++++|++..|+.+. ...|+..++
T Consensus 370 ~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 370 QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 5654433321 0 11 1278999999645555444 677877765
No 280
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=8.3e-06 Score=81.56 Aligned_cols=235 Identities=13% Similarity=0.114 Sum_probs=144.6
Q ss_pred ceeEEEEcC-CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-C----
Q psy2110 143 LAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-G---- 216 (622)
Q Consensus 143 ~v~~~~~s~-d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g---- 216 (622)
....++++| ++..|+++...+.|+.+|+..+......... .....++|+++|++|+++... +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~------------~~P~~ia~d~~G~~lyvad~~~~~~~~ 205 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGL------------SKVRTICWTHEADSMIITNDQNNNDRP 205 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCC------------SCEEEEEECTTSSEEEEEECCSCTTSE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCC------------CCcceEEEeCCCCEEEEEeCCCCcccc
Confidence 446899998 4566666665578999998776443332211 246789999999966666542 1
Q ss_pred eEEEEEcCCCceE--EEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeC--CCCeEEEEEeCCCCe
Q psy2110 217 RIVLWDFLTRGIA--KIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYRF--PSPILKVQFHPRNDH 291 (622)
Q Consensus 217 ~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 291 (622)
.+.+++. .+... ..+.. ......++++| +|..+++-...+.|..++..++........ ......++|+|+++.
T Consensus 206 ~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 206 NNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp EEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred eEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence 2333443 33222 22322 23457788999 676666655678999999987765344432 245788999999998
Q ss_pred EEEEeeCCCcEEEEEecCC-ce---eecccCC---------------CCceE-EEEEe--------eCCCEEEEEecCCe
Q psy2110 292 MFLVCPMRHAAVLVDTDGD-HQ---IVPIDED---------------SDLSI-VASFD--------RRGQHVVTGNSKGK 343 (622)
Q Consensus 292 ~~~~~~~~~~i~~~d~~~~-~~---~~~~~~~---------------~~~~~-~~~~~--------~~~~~l~~~~~dg~ 343 (622)
++++....+.|..++.... .. ...+... -.... .++.. ++|.++++-...+.
T Consensus 284 lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~ 363 (430)
T 3tc9_A 284 AYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC 363 (430)
T ss_dssp EEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE
T ss_pred EEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE
Confidence 8888888899999887642 11 1111100 01122 34443 34666666667788
Q ss_pred EEEEeCCCccEEEEEec----C-------------CCCEEEEEEcCC-CCEEEEEeCCCcEEEEecc
Q psy2110 344 VLVLSCPALELKASFKA----S-------------TTAIKSIEFARR-GNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 344 i~i~d~~~~~~~~~~~~----~-------------~~~i~~~~~s~~-~~~l~~~~~d~~i~i~d~~ 392 (622)
|+.++ .++........ . -..-..++++|+ +.++++-..++.|+.++++
T Consensus 364 I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 364 IRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 99998 45654333221 0 124678999995 5544444556778887764
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.69 E-value=6.5e-05 Score=74.30 Aligned_cols=244 Identities=7% Similarity=-0.058 Sum_probs=150.3
Q ss_pred CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe-eCCCcEEEEecCC
Q psy2110 94 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWDFLT 172 (622)
Q Consensus 94 ~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~dg~i~vw~~~~ 172 (622)
.+|+.+. .+.|+..++........+...... ..++|++.+..|+.+ ...+.|+.+++..
T Consensus 84 ~~ll~~~--~~~I~~i~l~~~~~~~~~~~~~~~------------------~~l~~d~~~~~lywsD~~~~~I~~~~~~g 143 (400)
T 3p5b_L 84 AYLFFTN--RHEVRKMTLDRSEYTSLIPNLRNV------------------VALDTEVASNRIYWSDLSQRMICSTQLDR 143 (400)
T ss_dssp CEEEEEE--TTEEEEECTTSCSCEEEECSCSCE------------------EEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred ceeEEec--cceeEEEccCCcceeEeccccCcc------------------eEEeeeeccCceEEEecCCCeEEEEEccc
Confidence 3555554 268888888766655544443333 499999876666554 4567888888765
Q ss_pred cc----cccccccccCCCcccccccccceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCC
Q psy2110 173 RG----IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRN 247 (622)
Q Consensus 173 ~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 247 (622)
.. ....+... ......+++.+.+..| ++-...+.|.+.++........+.........|++.|.
T Consensus 144 ~~~~~~~~~~~~~~-----------~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~ 212 (400)
T 3p5b_L 144 AHGVSSYDTVISRD-----------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV 212 (400)
T ss_dssp ----CCCEEEECSS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETT
T ss_pred CCCCCcceEEEeCC-----------CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecc
Confidence 22 11111111 1235788998854444 44455788999998765544444444456789999997
Q ss_pred CCEEEEEeC--CCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC--CCCc
Q psy2110 248 GYKIISAST--DNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE--DSDL 322 (622)
Q Consensus 248 ~~~l~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~ 322 (622)
+.+|+.+.. .+.|...++.......... .-.....+++++++..++++-...+.|..+|+........... .-..
T Consensus 213 ~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~ 292 (400)
T 3p5b_L 213 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH 292 (400)
T ss_dssp TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSS
T ss_pred cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCC
Confidence 666666553 3689999987554444433 2356789999999888888888888999999876433222221 2233
Q ss_pred eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEE
Q psy2110 323 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIE 369 (622)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 369 (622)
...+++ ..+..+++....+.|..++..+++.+..+........+++
T Consensus 293 P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 293 PFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp EEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred CEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 445555 2334455555667788888777776665554433344443
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.67 E-value=1.1e-05 Score=80.65 Aligned_cols=234 Identities=12% Similarity=0.097 Sum_probs=143.6
Q ss_pred ceeEEEEcCC--CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC----
Q psy2110 143 LAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG---- 216 (622)
Q Consensus 143 ~v~~~~~s~d--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---- 216 (622)
....++|+|+ ...|+.+...+.|+.++..++......... .....++++++|+ |+++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~------------~~P~giavd~dG~-lyVad~~~~~~~ 206 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNI------------GQCADVNFTLNGD-MVVVDDQSSDTN 206 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCC------------SCEEEEEECTTCC-EEEEECCSCTTS
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCC------------CCccEEEECCCCC-EEEEcCCCCccc
Confidence 3469999995 445555544488999998776554433211 2468999999999 54444321
Q ss_pred -eEEEEEcCCCce-EEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEE-EEEeC--CCCeEEEEEeCCCC
Q psy2110 217 -RIVLWDFLTRGI-AKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECE-QKYRF--PSPILKVQFHPRND 290 (622)
Q Consensus 217 -~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~--~~~v~~~~~~~~~~ 290 (622)
.+...+...+.. ...+. .......+++++ +|..+++-..++.|+.++..++... ..+.. ......++++|+++
T Consensus 207 ~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 207 TGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD 285 (433)
T ss_dssp EEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred ceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence 233333222211 01222 223456788999 6665555556788999999878763 33332 22234699999999
Q ss_pred eEEEEeeCCCcEEEEEecCC--ce--eecccC---------------CCCceEEEEE---------eeCCCEEEEEecCC
Q psy2110 291 HMFLVCPMRHAAVLVDTDGD--HQ--IVPIDE---------------DSDLSIVASF---------DRRGQHVVTGNSKG 342 (622)
Q Consensus 291 ~~~~~~~~~~~i~~~d~~~~--~~--~~~~~~---------------~~~~~~~~~~---------~~~~~~l~~~~~dg 342 (622)
.++++-...+.|+.++.... .. ...+.. .-.....+++ .++|.++++-...+
T Consensus 286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~ 365 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH 365 (433)
T ss_dssp EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence 88888888899999887532 10 001100 1123456888 77777777777788
Q ss_pred eEEEEeCCCccEEEEEecC------------------CCCEEEEEEc-CCCCEEEEEeCCCcEEEEecc
Q psy2110 343 KVLVLSCPALELKASFKAS------------------TTAIKSIEFA-RRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 343 ~i~i~d~~~~~~~~~~~~~------------------~~~i~~~~~s-~~~~~l~~~~~d~~i~i~d~~ 392 (622)
.|+.++. ++... ++-+. -..-..|+++ ++|.++++-..++.|+.++++
T Consensus 366 ~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 366 TVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 9999985 55433 33221 1235688999 566655555567788887764
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.66 E-value=5.9e-06 Score=89.25 Aligned_cols=197 Identities=9% Similarity=0.053 Sum_probs=102.4
Q ss_pred EEEEcCCCCEEEEecCCC----CeEEEEEcCCCce--EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110 86 KCCFSGDGEYVCAGSARQ----HALYIWEKSVGNL--VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG 159 (622)
Q Consensus 86 ~~~~sp~~~~l~~~~~~~----~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 159 (622)
.++|+|||+.|+....+. ..|+++++.+++. ...+........ ..+.|||||++|+..
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~----------------~~~~~SpDg~~l~~~ 288 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFS----------------AFMYKAADTNTLCIG 288 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCE----------------EEEEECTTSSEEEEE
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceE----------------EEEEECCCCCEEEEE
Confidence 478999999988876542 3688888877642 223322222221 478999999988866
Q ss_pred eC---CCcEEEEecCCcc-cc--cccccccCCCcccccccccceEEEEECCCCCEEEEEe-CC----CeEEEEEcCCCce
Q psy2110 160 CN---DGRIVLWDFLTRG-IA--KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-ND----GRIVLWDFLTRGI 228 (622)
Q Consensus 160 ~~---dg~i~vw~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~d----g~i~iwd~~~~~~ 228 (622)
+. ...|.++|+.++. .. ..+..... .....+.|+. |+.|+..+ .+ ..|..+++.++..
T Consensus 289 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~----------~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~ 357 (751)
T 2xe4_A 289 SQSPETAEVHLLDLRKGNAHNTLEIVRPREK----------GVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD 357 (751)
T ss_dssp EECSSCEEEEEEESSSCTTCCCEEESSCCCT----------TCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC
T ss_pred ecCCCCceEEEEECCCCCCCceeEEeecCCC----------CceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc
Confidence 53 3458888887752 11 22211110 1234444444 55444443 33 3566777665322
Q ss_pred EEE-eccCCc--CeeEEEEcCCCCEEEEEeCCCc--EEEEEC-------CCCcEEEEEeCCCCeEEEEE------eCCCC
Q psy2110 229 AKI-ISAHMH--PVCSISWSRNGYKIISASTDNN--VCIWDV-------LTGECEQKYRFPSPILKVQF------HPRND 290 (622)
Q Consensus 229 ~~~-~~~~~~--~v~~~~~s~~~~~l~s~~~d~~--i~iwd~-------~~~~~~~~~~~~~~v~~~~~------~~~~~ 290 (622)
... +..+.. .+..+.+. .+..+++...++. |.++++ .+++....+..+.....+.+ ++++.
T Consensus 358 ~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 436 (751)
T 2xe4_A 358 WSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEP 436 (751)
T ss_dssp CCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCS
T ss_pred ceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCC
Confidence 222 333333 34555554 2334455556664 566675 34441344444433323333 34666
Q ss_pred eEEEEeeCCC---cEEEEEecCC
Q psy2110 291 HMFLVCPMRH---AAVLVDTDGD 310 (622)
Q Consensus 291 ~~~~~~~~~~---~i~~~d~~~~ 310 (622)
.++++.+... .++.+|+.++
T Consensus 437 ~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 437 TFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp CEEEEEEETTEEEEEEEECTTTC
T ss_pred EEEEEEeCCCCCCEEEEEECCCC
Confidence 5655544332 3455555443
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.66 E-value=4.1e-05 Score=72.97 Aligned_cols=234 Identities=8% Similarity=-0.050 Sum_probs=143.1
Q ss_pred EEEEecCCCCeEEEEEcCCCc--eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE-EeeCCCcEEEEecC
Q psy2110 95 YVCAGSARQHALYIWEKSVGN--LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGRIVLWDFL 171 (622)
Q Consensus 95 ~l~~~~~~~~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~vw~~~ 171 (622)
+|+.+. ...|+.+++.... ....+.+.... ..++|.+.+..|+ +-...+.|..+++.
T Consensus 6 ~ll~~~--~~~I~~i~l~~~~~~~~~~~~~~~~~------------------~~ld~d~~~~~lyw~D~~~~~I~r~~~~ 65 (318)
T 3sov_A 6 LLLYAN--RRDLRLVDATNGKENATIVVGGLEDA------------------AAVDFVFSHGLIYWSDVSEEAIKRTEFN 65 (318)
T ss_dssp EEEEEC--EEEEEEEETTCTTSCCEEEEEEEEEE------------------EEEEEEGGGTEEEEEETTTTEEEEEETT
T ss_pred EEEEEc--cCeEEEEECCCCceEEEEEecCCCcc------------------EEEEEEeCCCEEEEEECCCCcEEEEEcc
Confidence 455544 2689999987653 22222222222 3889998655554 44556789888887
Q ss_pred CcccccccccccCCCcccccccccceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCE
Q psy2110 172 TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYK 250 (622)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 250 (622)
.+.....+.... ......+++.+.+..| ++-...+.|.++++........+.........+++.|.+.+
T Consensus 66 g~~~~~~~~~~~----------l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ 135 (318)
T 3sov_A 66 KTESVQNVVVSG----------LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGF 135 (318)
T ss_dssp SSSCCCEEEEEC----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTE
T ss_pred CCCceEEEEcCC----------CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCE
Confidence 653221111110 0124578888755544 44455788999998654433333344456789999987666
Q ss_pred EEEEeC--CCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEE
Q psy2110 251 IISAST--DNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVAS 327 (622)
Q Consensus 251 l~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 327 (622)
|+.+.. .+.|...++.......... .-.....+++++++..++++-...+.|..+++..................++
T Consensus 136 ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gla 215 (318)
T 3sov_A 136 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT 215 (318)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEE
T ss_pred EEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 666653 4778888876443333332 2345689999998888888888888999999875433322232334455666
Q ss_pred EeeCCCEEEEEecCCeEEEEeCCCccEEEEEe
Q psy2110 328 FDRRGQHVVTGNSKGKVLVLSCPALELKASFK 359 (622)
Q Consensus 328 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 359 (622)
+. .+..+++-...+.|..++..+++....+.
T Consensus 216 v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 216 LF-EDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred Ee-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 64 33445555566788888887776554444
No 285
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.64 E-value=0.0015 Score=73.29 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=121.9
Q ss_pred cEEEEECCCCcEEEEEeCC--CCeEEEE---EeCCCCeEEEEee----------CCCcEEEEEecCCcee-ecccCCCCc
Q psy2110 259 NVCIWDVLTGECEQKYRFP--SPILKVQ---FHPRNDHMFLVCP----------MRHAAVLVDTDGDHQI-VPIDEDSDL 322 (622)
Q Consensus 259 ~i~iwd~~~~~~~~~~~~~--~~v~~~~---~~~~~~~~~~~~~----------~~~~i~~~d~~~~~~~-~~~~~~~~~ 322 (622)
.|++.|..+.+.+..+... ..+.+++ |..+...++++|. ..|.+.+|++...+.. .......+.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 4778888888877776643 3344444 3334345666664 3578999998743211 111223455
Q ss_pred eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE-EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCC
Q psy2110 323 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA-SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDG 401 (622)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 401 (622)
+++++-- +| +|++|- ...|++|++...+.+. ..... ..|..+.....++++++|..-..|.++..+.
T Consensus 888 v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~-------- 955 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKP-------- 955 (1158)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEET--------
T ss_pred CEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEc--------
Confidence 6665432 45 555543 4579999998665443 22212 2233333333577888888777777766542
Q ss_pred CCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC--------CeeEEEEecCCCCceeEEE---ECCC
Q psy2110 402 DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV--------GNLVKILHGTKGELLLDVV---WHPV 470 (622)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~~~v~~v~---~sp~ 470 (622)
....+..+........++++.|-.++ .++.+.. +|.|.+..... .++...-.-|-+..|+++. +.+.
T Consensus 956 ~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~-~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~ 1033 (1158)
T 3ei3_A 956 MEGNFEEIARDFNPNWMSAVEILDDD-NFLGAEN-AFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1033 (1158)
T ss_dssp TTTEEEEEEECCSCBCEEEEEEEETT-EEEEEET-TSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC
T ss_pred CCCeEEEEEeecccccEEEEEEEccC-cEEEEcC-CCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecC
Confidence 22344445444455556667665444 5666665 88999987643 1233333445555588775 3443
Q ss_pred C---------CEEEEEe-CCcEEEeec
Q psy2110 471 R---------PIIASIS-SGVVSLWAQ 487 (622)
Q Consensus 471 ~---------~~l~s~~-dg~v~iw~~ 487 (622)
+ ..++.++ +|.|.+.-.
T Consensus 1034 ~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1034 NLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp -------CEEEEEEEEETTSCEEEEEE
T ss_pred CCccccccccceEEEEecCCEEEEEEE
Confidence 2 2355555 998877654
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.63 E-value=8.8e-05 Score=70.67 Aligned_cols=246 Identities=9% Similarity=-0.014 Sum_probs=151.1
Q ss_pred EEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEE-EEE-eCCCCeEE
Q psy2110 208 LLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRNGYKIISA-STDNNVCIWDVLTGECE-QKY-RFPSPILK 282 (622)
Q Consensus 208 ~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~-~~~-~~~~~v~~ 282 (622)
+|+.+. ...|+.+++.... ....+. .......++|.+.+..|+.+ ...+.|..+++..+... ..+ ..-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 344443 4678999987653 222222 22456789999865555544 45678999998766321 122 22345678
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEe--cCCeEEEEeCCCccEEEEEec
Q psy2110 283 VQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN--SKGKVLVLSCPALELKASFKA 360 (622)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~ 360 (622)
+++.+.+..++++-...+.|.++++..................++++|.+..|+... ..+.|..+++...........
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 999987887888877888999999876544333334445567899998766666655 357898888764332222223
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCe
Q psy2110 361 STTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHA 439 (622)
Q Consensus 361 ~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~ 439 (622)
.-..-+.|++++++..|..+. ..+.|..++++. . ..+.+... .......+++. +..++......+.
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--------~--~~~~~~~~-~~~~P~glav~--~~~lywtd~~~~~ 230 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--------T--NRQAVVKG-SLPHPFALTLF--EDILYWTDWSTHS 230 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------C--SCEEEECS-CCSCEEEEEEE--TTEEEEEETTTTE
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC--------C--ceEEEecC-CCCCceEEEEe--CCEEEEEecCCCe
Confidence 334568999999777776664 567899999872 1 11111110 11112345554 3455555555789
Q ss_pred EEEEECCCCeeEEEEecCCCCceeEEE-ECC
Q psy2110 440 LYIWEKSVGNLVKILHGTKGELLLDVV-WHP 469 (622)
Q Consensus 440 i~iwd~~~~~~~~~~~~~~~~~v~~v~-~sp 469 (622)
|..++..+|+....+...... +.+++ ++|
T Consensus 231 V~~~~~~~G~~~~~i~~~~~~-P~~i~v~~~ 260 (318)
T 3sov_A 231 ILACNKYTGEGLREIHSDIFS-PMDIHAFSQ 260 (318)
T ss_dssp EEEEETTTCCSCEEEECCCSS-CCCEEEECG
T ss_pred EEEEECCCCCceEEEeCCCCC-CcEEEEecc
Confidence 999999888877776654333 34443 344
No 287
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.61 E-value=0.0018 Score=72.54 Aligned_cols=429 Identities=10% Similarity=0.118 Sum_probs=220.6
Q ss_pred EEEccCCcEEEeccCCCeEEEEeccccc-e--ecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccc
Q psy2110 7 ASFDRRGQHVVTGNSKGKVLVLSCPALE-L--KASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM 83 (622)
Q Consensus 7 ~~fspdg~~latg~~dg~v~vwd~~~~~-~--~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (622)
++..|.+-+++.+.....+.-|....+. . .+.++..++.++ .+.+.++.+... .........-...
T Consensus 487 vQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~----------~L~~~~~~~l~~e 555 (1158)
T 3ei3_A 487 IQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ----------ELRQISHTEMEHE 555 (1158)
T ss_dssp EEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETT----------EEEEEEEEECSSC
T ss_pred EEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCC----------ceeeecccCCCCc
Confidence 3444555555544434455567654332 1 133455666664 566767665421 1111122223446
Q ss_pred eeEEEEcCC------CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110 84 WKKCCFSGD------GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157 (622)
Q Consensus 84 ~~~~~~sp~------~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 157 (622)
+.|+++.|. ++++++|...+++++|+++.+.+.+....-....+- ..+.-+.+ ....+|.
T Consensus 556 vscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p-------------~si~l~~~-~~~~~L~ 621 (1158)
T 3ei3_A 556 VACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIP-------------RSILMTTF-ESSHYLL 621 (1158)
T ss_dssp EEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCE-------------EEEEEEEE-TTEEEEE
T ss_pred eEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCC-------------cEEEEEEe-CCCcEEE
Confidence 788998864 468999987569999999987665543322111110 00112222 2345788
Q ss_pred EeeCCCcEEEEecC--CcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE-EEecc
Q psy2110 158 VGCNDGRIVLWDFL--TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA-KIISA 234 (622)
Q Consensus 158 s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~-~~~~~ 234 (622)
.|-.||.+.-+.+. +|.....-.... +. ..+.-..+...|..-+.+..+....++.-. ++.. ..+.
T Consensus 622 igl~dG~l~~~~~d~~tg~l~d~r~~~L-----G~----~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~- 690 (1158)
T 3ei3_A 622 CALGDGALFYFGLNIETGLLSDRKKVTL-----GT----QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVN- 690 (1158)
T ss_dssp EEETTSEEEEEEECTTTCCEEEEEEEEC-----CS----SCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBS-
T ss_pred EEeCCCeEEEEEEcCCCCccccceeEEc-----CC----CceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccC-
Confidence 88899988766554 333321110000 00 112222333334333333334444444432 2222 1111
Q ss_pred CCcCe-eEEEEcCC--CCEEEEEeCCCcEEEEECCCC--cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC----------
Q psy2110 235 HMHPV-CSISWSRN--GYKIISASTDNNVCIWDVLTG--ECEQKYRFPSPILKVQFHPRNDHMFLVCPMR---------- 299 (622)
Q Consensus 235 ~~~~v-~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------- 299 (622)
-..+ ....|+.. ..-++..+ ++.++|..+..- -.++.+.....+..++++|..+.+++..+..
T Consensus 691 -~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~ 768 (1158)
T 3ei3_A 691 -LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 768 (1158)
T ss_dssp -SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEE
T ss_pred -hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccc
Confidence 1122 23345332 23455444 456888877543 2455666778899999999877655544211
Q ss_pred --------------------------------------CcEEEEEecCCceeecccCC-CCceEEEE---Eee-CCCEEE
Q psy2110 300 --------------------------------------HAAVLVDTDGDHQIVPIDED-SDLSIVAS---FDR-RGQHVV 336 (622)
Q Consensus 300 --------------------------------------~~i~~~d~~~~~~~~~~~~~-~~~~~~~~---~~~-~~~~l~ 336 (622)
..++++|..+...+..+.-. ...+.+++ +.. ...+++
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lv 848 (1158)
T 3ei3_A 769 ALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFI 848 (1158)
T ss_dssp ESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEE
T ss_pred hhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEE
Confidence 12445555444433332221 22233333 222 246888
Q ss_pred EEe----------cCCeEEEEeCCCccEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCc
Q psy2110 337 TGN----------SKGKVLVLSCPALELKASFK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEP 405 (622)
Q Consensus 337 ~~~----------~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 405 (622)
+|+ ..|.|++|++..+++....+ ...+.+++++-- +| +|+++- ...|++|++.. .+.
T Consensus 849 VGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~---------~~~ 916 (1158)
T 3ei3_A 849 VGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTT---------EKE 916 (1158)
T ss_dssp EEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECT---------TSC
T ss_pred EEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCC---------Cce
Confidence 886 35889999987544322222 335778887644 34 455443 47899999973 112
Q ss_pred ceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEE--EECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcE
Q psy2110 406 IQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYI--WEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVV 482 (622)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~i--wd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v 482 (622)
++.-...... +..+.....|++|++|...+ .|.+ |+...+++...-+......++++.+-.++ .++.+. +|++
T Consensus 917 L~~~~~~~~~--i~~~~l~~~~~~I~vgD~~~-Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl 992 (1158)
T 3ei3_A 917 LRTECNHYNN--IMALYLKTKGDFILVGDLMR-SVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNL 992 (1158)
T ss_dssp EEEEEEECCC--SCEEEEEEETTEEEEEESSB-CEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEE
T ss_pred EEEEeecccc--EEEEEEeccCCEEEEEEhhh-eEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcE
Confidence 2210001111 12223334578899988743 4544 55555555444444333348888887555 555566 8999
Q ss_pred EEeecCC
Q psy2110 483 SLWAQNQ 489 (622)
Q Consensus 483 ~iw~~~~ 489 (622)
.+...+.
T Consensus 993 ~vl~~~~ 999 (1158)
T 3ei3_A 993 FVCQKDS 999 (1158)
T ss_dssp EEEEECT
T ss_pred EEEecCC
Confidence 9988754
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.59 E-value=0.00012 Score=78.47 Aligned_cols=249 Identities=10% Similarity=0.018 Sum_probs=156.1
Q ss_pred EEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEE-eCCCcEEEEECCCC----cEEEEEe-CCCCeE
Q psy2110 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISA-STDNNVCIWDVLTG----ECEQKYR-FPSPIL 281 (622)
Q Consensus 208 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~----~~~~~~~-~~~~v~ 281 (622)
+|+.+ ....|+..++........+. ....+..|+|.+....|+.+ ...+.|+.+++... .....+. ......
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 44444 34568888877665444443 34667899999865555544 44577888888753 2233333 335677
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec--CCeEEEEeCCCccEEEEEe
Q psy2110 282 KVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS--KGKVLVLSCPALELKASFK 359 (622)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~ 359 (622)
.|++.+.+..++++-...+.|.+.++........+.........++++|.+.+|+.... .+.|...++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 89999988888888888899999999876544444444455788999998666665542 3689999987544444444
Q ss_pred cCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC
Q psy2110 360 ASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH 438 (622)
Q Consensus 360 ~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~ 438 (622)
..-...+.|++++.+..|+.+. ..+.|..+++.. . .....+.....-.....+++ ++.+|+.+....+
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG--------~-~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~ 623 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--------G-NRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINE 623 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------C-SCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC--------C-ceEEEecCCCccCCCCEEEE--eCCEEEEEECCCC
Confidence 4446788999998777777764 456798888863 1 11111111111111123444 4557777766678
Q ss_pred eEEEEECCCCeeEEEEecCCCCceeEE-EECCC
Q psy2110 439 ALYIWEKSVGNLVKILHGTKGELLLDV-VWHPV 470 (622)
Q Consensus 439 ~i~iwd~~~~~~~~~~~~~~~~~v~~v-~~sp~ 470 (622)
.|+..+..+|+.+..+...... ...| .++|.
T Consensus 624 ~I~~~dk~tG~~~~~l~~~l~~-P~~i~v~h~~ 655 (791)
T 3m0c_C 624 AIFSANRLTGSDVNLLAENLLS-PEDMVLFHNL 655 (791)
T ss_dssp EEEEEETTTCCCCEEEECSCSC-CCCEEEESGG
T ss_pred EEEEEeCCCCcceEEeecCCCC-ceeEeeeccc
Confidence 8999998888777777544333 3334 34443
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.54 E-value=5.7e-05 Score=75.44 Aligned_cols=240 Identities=10% Similarity=0.052 Sum_probs=140.0
Q ss_pred CeeEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC---C-cEEEEEecCCc
Q psy2110 238 PVCSISWSRN--GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR---H-AAVLVDTDGDH 311 (622)
Q Consensus 238 ~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~-~i~~~d~~~~~ 311 (622)
....++|+++ ...|+.+...+.|+.+|..+++.............+++++++. ++++.... . .+..++.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 4578999984 4456665544899999998888776655556789999999998 66655422 1 23333322211
Q ss_pred e-eecccCCCCceEEEEEee-CCCEEEEEecCCeEEEEeCCCccEEEEE-ec-CCCCEEEEEEcCCCCEEEEE-eCCCcE
Q psy2110 312 Q-IVPIDEDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALELKASF-KA-STTAIKSIEFARRGNCLLVN-TGDRLI 386 (622)
Q Consensus 312 ~-~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~-~~~~i~~~~~s~~~~~l~~~-~~d~~i 386 (622)
. ...+. .......+++++ +|.++++-..++.|+.++..++.....+ .. ....-..++|+|++++|+++ ...+.|
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1 00111 123344578889 6776666667789999999877763333 21 12223479999999966655 456789
Q ss_pred EEEecccccccCCCCCCCcceeeecc------c-------cceeeeeEEE---------cCCCCeEEEeeCCCCeEEEEE
Q psy2110 387 RVYNHQEVLNAGKDGDPEPIQKLQDL------V-------NKTMWKKCCF---------SGDGEYVCAGSARQHALYIWE 444 (622)
Q Consensus 387 ~i~d~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~---------spdg~~l~~~~~~d~~i~iwd 444 (622)
+.+++.... +.......+.+. . .-.....+++ .++|.+.++-.. .+.|+.++
T Consensus 298 ~~~~~d~~~-----~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~-n~~I~~~~ 371 (433)
T 4hw6_A 298 YRVDYNRET-----GKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD-SHTVRVLT 371 (433)
T ss_dssp EEEEBCTTT-----CCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT-TTEEEEEC
T ss_pred EEEeCCCCC-----cccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC-CCEEEEEC
Confidence 998865210 000000011100 0 0011245788 667766555544 78999998
Q ss_pred CCCCeeEEEEecCC---------C--------CceeEEEECC-CCCEEEEEe-CCcEEEeec
Q psy2110 445 KSVGNLVKILHGTK---------G--------ELLLDVVWHP-VRPIIASIS-SGVVSLWAQ 487 (622)
Q Consensus 445 ~~~~~~~~~~~~~~---------~--------~~v~~v~~sp-~~~~l~s~~-dg~v~iw~~ 487 (622)
. +|.. ..+.+.. + .....|+++| ++.++++-. .+.|+..++
T Consensus 372 ~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 372 P-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp T-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred C-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 5 5653 3443321 0 1267899994 554444433 677877765
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.50 E-value=0.00039 Score=66.72 Aligned_cols=267 Identities=10% Similarity=0.038 Sum_probs=145.3
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec----cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q psy2110 196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS----AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE 271 (622)
Q Consensus 196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 271 (622)
.+.++.|.+.+..+++| ..|.| +...+.++.-..+. .....+.++.+.+ +. ++.++..+.|.. ....|+.-
T Consensus 37 ~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~tW 111 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQSW 111 (327)
T ss_dssp CEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTSSC
T ss_pred cEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCCCc
Confidence 47888998888877755 56654 33333333212221 1244688999976 43 444455664443 33444433
Q ss_pred EEEe----CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee-ecccCCCCceEEEEEeeCCCEEEEEecCCeEEE
Q psy2110 272 QKYR----FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI-VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLV 346 (622)
Q Consensus 272 ~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 346 (622)
.... .+..+..+.+.+++. +++++ .++.++. ....+..- .........+..+.+.+++.+++++...+..+-
T Consensus 112 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S 188 (327)
T 2xbg_A 112 SQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYST 188 (327)
T ss_dssp EECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEE
T ss_pred eECccccCCCCCeEEEEEECCCC-EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEE
Confidence 3332 234577787776554 44444 3444322 12222111 111223446778899999888877654443333
Q ss_pred EeC--CCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecc--ccceeeeeEE
Q psy2110 347 LSC--PALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL--VNKTMWKKCC 422 (622)
Q Consensus 347 ~d~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 422 (622)
.|- .+.+.+. ......+..+.+.++++.+ .++.+|.+++.+.+.. .....+... .....+..+.
T Consensus 189 ~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G---------~tW~~~~~~~~~~~~~~~~v~ 256 (327)
T 2xbg_A 189 WEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNS---------ENWGELLSPLRRNSVGFLDLA 256 (327)
T ss_dssp ECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEE---------EEECCCBCTTSSCCSCEEEEE
T ss_pred eCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCC---------CeeEeccCCcccCCcceEEEE
Confidence 442 2333332 2345678899999998755 5556788777642211 111111111 1122356778
Q ss_pred EcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec---CCCCceeEEEECCCCCEEEEEeCCcEEEee
Q psy2110 423 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG---TKGELLLDVVWHPVRPIIASISSGVVSLWA 486 (622)
Q Consensus 423 ~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~ 486 (622)
+.+++..++++. ++.| ++..+.|+.-..+.. .... +.++.|.+++.+++.+.+|.|.-++
T Consensus 257 ~~~~~~~~~~g~--~g~i-~~S~DgG~tW~~~~~~~~~~~~-~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 257 YRTPNEVWLAGG--AGAL-LCSQDGGQTWQQDVDVKKVPSN-FYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp ESSSSCEEEEES--TTCE-EEESSTTSSCEECGGGTTSSSC-CCEEEEEETTEEEEECSTTEEEEEC
T ss_pred ecCCCEEEEEeC--CCeE-EEeCCCCcccEEcCccCCCCCC-eEEEEEECCCceEEEcCCceEEEEc
Confidence 998888777765 5556 455565655554442 2233 7889998666655555589776654
No 291
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.49 E-value=0.00012 Score=66.48 Aligned_cols=200 Identities=10% Similarity=0.091 Sum_probs=126.5
Q ss_pred ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEec--cCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110 83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG--TKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC 160 (622)
Q Consensus 83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 160 (622)
.+..++|+|++..|.+....++.|...|.. ++.++.+.- ..+ . ..+++.+++.++++.-
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D-~-----------------EGIa~~~~g~~~vs~E 88 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKD-L-----------------ETIEYIGDNQFVISDE 88 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSS-E-----------------EEEEECSTTEEEEEET
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCC-h-----------------HHeEEeCCCEEEEEEC
Confidence 356799999888777765556899999998 888877642 222 2 4888889998777766
Q ss_pred CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC---CceEEEec----
Q psy2110 161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT---RGIAKIIS---- 233 (622)
Q Consensus 161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~---~~~~~~~~---- 233 (622)
.++.+.++++.....+........+. .........-.++|+|.++.|+++.......+|.+.. ...+..+.
T Consensus 89 ~~~~l~~~~v~~~~~i~~~~~~~~~~--~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~ 166 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEVKILKKIKIPL--QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL 166 (255)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEECCC--SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH
T ss_pred CCCcEEEEEcCCCCeeeeeeeecccc--ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh
Confidence 77889999876654321111110000 0011123467899999998888777665556666541 11122221
Q ss_pred ---cCCcCeeEEEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEEeCC----------CCeEEEEEeCCCCeEEEEeeCC
Q psy2110 234 ---AHMHPVCSISWSRNGYKII-SASTDNNVCIWDVLTGECEQKYRFP----------SPILKVQFHPRNDHMFLVCPMR 299 (622)
Q Consensus 234 ---~~~~~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~ 299 (622)
.+...+.++++.|....|+ .....+.|.++|.. ++.+..+... .....+++.++|. ++++ +..
T Consensus 167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~ 243 (255)
T 3qqz_A 167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEP 243 (255)
T ss_dssp HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETT
T ss_pred ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCC
Confidence 1334678999999655554 44456778889865 6677666633 2678999999996 5555 444
Q ss_pred CcEEEEE
Q psy2110 300 HAAVLVD 306 (622)
Q Consensus 300 ~~i~~~d 306 (622)
+.++.+.
T Consensus 244 n~~y~f~ 250 (255)
T 3qqz_A 244 NRFYRFT 250 (255)
T ss_dssp TEEEEEE
T ss_pred ceEEEEE
Confidence 5555554
No 292
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.48 E-value=8.2e-05 Score=67.52 Aligned_cols=203 Identities=14% Similarity=0.140 Sum_probs=130.6
Q ss_pred CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc-CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc-
Q psy2110 276 FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID-EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE- 353 (622)
Q Consensus 276 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~- 353 (622)
....+..++++|++..++++...++.|..+|.. +..+..+. ........+++.+++.++++.-.++.+.++++....
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 345799999999988888888888899999988 54444442 223456678888888877776667889999876443
Q ss_pred --EEEEEe------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec-----cccceeeee
Q psy2110 354 --LKASFK------ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD-----LVNKTMWKK 420 (622)
Q Consensus 354 --~~~~~~------~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 420 (622)
.+.... ..+.....++|+|.++.|+++.......+|.++.... . ..+..+.. ...-.....
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~-----~-~~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS-----S-NELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC-----S-SCCEEEECHHHHHTCCSSCCCE
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc-----C-CceeeecchhhccccccCCcee
Confidence 223332 2244568999999998888877655556666552100 0 11121111 111123467
Q ss_pred EEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCC--------CceeEEEECCCCCEEEEEeCCcEEEee
Q psy2110 421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKG--------ELLLDVVWHPVRPIIASISSGVVSLWA 486 (622)
Q Consensus 421 ~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~v~~v~~sp~~~~l~s~~dg~v~iw~ 486 (622)
+++.|....+...+.....|.++|.. |+.+..+.-..+ .....|+|.++|.+.+++.-..++.+.
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence 89999766665555558899999965 666666543321 126889999999855554344455443
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.43 E-value=0.00032 Score=75.14 Aligned_cols=224 Identities=7% Similarity=-0.059 Sum_probs=135.4
Q ss_pred CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE-EeeCCCcEEEEecCCcc----cccc
Q psy2110 104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGRIVLWDFLTRG----IAKI 178 (622)
Q Consensus 104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~vw~~~~~~----~~~~ 178 (622)
..|+..++........+...... ..++|.+....|+ +-...+.|+.+++.... ....
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~~~~~------------------~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v 465 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPNLRNV------------------VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV 465 (791)
T ss_dssp SSEEEECTTSCCCEEEECSCSSE------------------EEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE
T ss_pred cceeEeeccCCcceeeecCCCce------------------EEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE
Confidence 46777777655544444443333 4899998655554 44456778888876531 1111
Q ss_pred cccccCCCcccccccccceEEEEECCCCCEEEEE-eCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-
Q psy2110 179 ISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST- 256 (622)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~- 256 (622)
+... ......+++.+.++.|+.+ ...+.|.+.++........+.........|++.|.+.+|+.+..
T Consensus 466 i~~~-----------l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g 534 (791)
T 3m0c_C 466 ISRD-----------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 534 (791)
T ss_dssp ECSS-----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred EecC-----------CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC
Confidence 1111 1234678898877655554 45788999998755544444444456889999997666666653
Q ss_pred C-CcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC--CCceEEEEEeeCC
Q psy2110 257 D-NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED--SDLSIVASFDRRG 332 (622)
Q Consensus 257 d-~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~ 332 (622)
. +.|...++........+. .-.....|++.+.+..|+++-.....|..+++........+... -.....+++ .+
T Consensus 535 ~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~ 612 (791)
T 3m0c_C 535 TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FE 612 (791)
T ss_dssp SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ET
T ss_pred CCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eC
Confidence 2 678888887555444444 23578899999988888888777888999998765443333221 122334444 33
Q ss_pred CEEE-EEecCCeEEEEeCCCccEEEEE
Q psy2110 333 QHVV-TGNSKGKVLVLSCPALELKASF 358 (622)
Q Consensus 333 ~~l~-~~~~dg~i~i~d~~~~~~~~~~ 358 (622)
.+|+ +-...+.|...+..+++.+..+
T Consensus 613 ~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 613 DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 3443 3345567777776666544444
No 294
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=0.00024 Score=70.93 Aligned_cols=255 Identities=12% Similarity=0.073 Sum_probs=143.2
Q ss_pred ceEEEEECCC-CCEEEEEe-CCCeEEEEEcCCCceEEEeccC---CcCeeEEEE-------cCCCCEEEEEeCCC-----
Q psy2110 196 LAVTCAFNKR-GTLLAVGC-NDGRIVLWDFLTRGIAKIISAH---MHPVCSISW-------SRNGYKIISASTDN----- 258 (622)
Q Consensus 196 ~v~~~~~s~~-g~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------s~~~~~l~s~~~d~----- 258 (622)
....++|+|. +..|+++. ..+.|++.|+.++.....+... ......++| +++|.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3578999983 44454444 3467888998887766554432 235789999 99999777776554
Q ss_pred --cEEEEECCC-CcEE-----EEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec-------CCce-----------
Q psy2110 259 --NVCIWDVLT-GECE-----QKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD-------GDHQ----------- 312 (622)
Q Consensus 259 --~i~iwd~~~-~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~-------~~~~----------- 312 (622)
.|.+++... +... +.+..-.....++++|++..++++...++.+..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266665443 2221 2222112345778899888888888888999999987 3332
Q ss_pred ---eecccCCCCceEEEEEeeCCCEEE-EEecCCeEEEEeC--CCccE--EEEEecC---C------------CCEE-EE
Q psy2110 313 ---IVPIDEDSDLSIVASFDRRGQHVV-TGNSKGKVLVLSC--PALEL--KASFKAS---T------------TAIK-SI 368 (622)
Q Consensus 313 ---~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~--~~~~~--~~~~~~~---~------------~~i~-~~ 368 (622)
+... ........++++|+|++|+ +-+..+.|+.++. ..+.. ...+-+. . ..-. .+
T Consensus 300 ~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 300 FKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp EEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred cceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 1111 2234457899999999644 4456678888654 33322 1222221 1 1233 44
Q ss_pred EEc-------CCCCEEEEEeCCCcEEEEecccccccCCCCCCCc-----ce--ee-ec-ccc---ceeeeeEEEcCCCCe
Q psy2110 369 EFA-------RRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEP-----IQ--KL-QD-LVN---KTMWKKCCFSGDGEY 429 (622)
Q Consensus 369 ~~s-------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~--~~-~~-~~~---~~~~~~~~~spdg~~ 429 (622)
+.. +++.++++-..++.|+.++....... ..+.... .. -+ .+ ... -.....+++++++..
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~T-iaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~ 457 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVST-YAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM 457 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEE-EEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeCCCCEEE-EecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence 554 45665555566788999985421100 0000000 00 00 00 000 011246788887334
Q ss_pred EEEeeCCCCeEEEEECCCCeeEE
Q psy2110 430 VCAGSARQHALYIWEKSVGNLVK 452 (622)
Q Consensus 430 l~~~~~~d~~i~iwd~~~~~~~~ 452 (622)
|+.+....+.|+.++++....+.
T Consensus 458 lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 458 FYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EEEEETTTTEEEEEEECCCC---
T ss_pred EEEEeCCCCEEEEEECCCCcccc
Confidence 44454457888888877654443
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.38 E-value=0.00018 Score=67.71 Aligned_cols=202 Identities=11% Similarity=0.184 Sum_probs=128.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCC----CCe--E-EEEeeC--CCcEEEEEecC-Cceeecc
Q psy2110 247 NGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPR----NDH--M-FLVCPM--RHAAVLVDTDG-DHQIVPI 316 (622)
Q Consensus 247 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~-~~~~~~--~~~i~~~d~~~-~~~~~~~ 316 (622)
...+++.....+-+.+||+ +|+.++.+.. +.+..+..-|. ++. + +++... ++.+.+|++.. ...+..+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 4456777777889999999 8888888764 66777777662 221 2 333344 57899998842 2223333
Q ss_pred cC-------CCCceEEEEE--eeC-CC-EEEEEecCCeEEEEeCC-------CccEEEEEecCCCCEEEEEEcCCCCEEE
Q psy2110 317 DE-------DSDLSIVASF--DRR-GQ-HVVTGNSKGKVLVLSCP-------ALELKASFKASTTAIKSIEFARRGNCLL 378 (622)
Q Consensus 317 ~~-------~~~~~~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 378 (622)
.. ....++.+|+ ++. ++ ++++...+|.+..|++. +.++++++... +.+..+...+....|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEE
Confidence 11 1145556676 664 44 67888889999998872 34567777754 5688889999888999
Q ss_pred EEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEE--cCCCC-eEEEeeCCCCeEEEEECC-CCeeEEEE
Q psy2110 379 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCF--SGDGE-YVCAGSARQHALYIWEKS-VGNLVKIL 454 (622)
Q Consensus 379 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--spdg~-~l~~~~~~d~~i~iwd~~-~~~~~~~~ 454 (622)
++-.+.-|..|+.+... ......+..+....-...+-.+++ .++|+ ||++++..++++.+||.. +.+.+..+
T Consensus 196 v~eEd~GIw~~da~p~~----~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDG----GSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEETTTEEEEEECSTTS----CSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EecccceEEEEeCCcCC----CCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 99998666666654200 001122322221111112334455 66777 888888667899999996 66777766
Q ss_pred e
Q psy2110 455 H 455 (622)
Q Consensus 455 ~ 455 (622)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 5
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.38 E-value=0.00016 Score=72.34 Aligned_cols=240 Identities=12% Similarity=0.098 Sum_probs=145.9
Q ss_pred ceeEEEEcC-CCCEEEEeeC-CCcEEEEecCCcccccccccccCCCcccccccccceEEEEE-------CCCCCEEEEEe
Q psy2110 143 LAVTCAFNK-RGTLLAVGCN-DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAF-------NKRGTLLAVGC 213 (622)
Q Consensus 143 ~v~~~~~s~-d~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~~g~~l~~~~ 213 (622)
....|+|+| +...|+.+.. .+.|++.|+.++............ ......++| +++|+.|+++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~--------~~~p~~ia~~~~~~~~d~~G~~lyvad 211 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP--------TNRIRSIAFNKKIEGYADEAEYMIVAI 211 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS--------CSBEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc--------cCCCcEEEEeecccccCCCCCEEEEEe
Confidence 346899998 3555555443 467888888876555433321100 124688999 99999777776
Q ss_pred CCC-------eEEEEEcCC-CceE-----EEeccCCcCeeEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCcE--
Q psy2110 214 NDG-------RIVLWDFLT-RGIA-----KIISAHMHPVCSISWSRN-GYKIISASTDNNVCIWDVL-------TGEC-- 270 (622)
Q Consensus 214 ~dg-------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~-------~~~~-- 270 (622)
..+ .|.+++... +... ..+... .....++++|+ +.++++-..++.|..+|+. ++..
T Consensus 212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 554 255665333 2221 222221 23457888995 4445555567789999987 5543
Q ss_pred ---------E-EEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc-ee---eccc---CC------------
Q psy2110 271 ---------E-QKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH-QI---VPID---ED------------ 319 (622)
Q Consensus 271 ---------~-~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~---~~~~---~~------------ 319 (622)
. ..+. .......++|+|+++.++++-...+.|+.++..... .+ ..+. ..
T Consensus 291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~ 370 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEAR 370 (496)
T ss_dssp CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCB
T ss_pred ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccc
Confidence 1 2233 234568999999999778888888899997765422 11 1110 00
Q ss_pred CCceE-EEEEe-------eCCCEEEEEecCCeEEEEeCCCccEEEEEecC------------------------CCCEEE
Q psy2110 320 SDLSI-VASFD-------RRGQHVVTGNSKGKVLVLSCPALELKASFKAS------------------------TTAIKS 367 (622)
Q Consensus 320 ~~~~~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------~~~i~~ 367 (622)
-.... .++.. ++|.++++-...++|+.++ .++. +.++-+. -..-..
T Consensus 371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~g 448 (496)
T 3kya_A 371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSG 448 (496)
T ss_dssp CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEE
T ss_pred cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcE
Confidence 01223 44554 5667777777788999998 4564 3344322 123568
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEeccc
Q psy2110 368 IEFARR-GNCLLVNTGDRLIRVYNHQE 393 (622)
Q Consensus 368 ~~~s~~-~~~l~~~~~d~~i~i~d~~~ 393 (622)
|+++++ |.++++-+.+..||.+++..
T Consensus 449 Iavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 449 LVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred EEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 899986 66555556678899988873
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.31 E-value=0.0026 Score=60.88 Aligned_cols=268 Identities=10% Similarity=-0.022 Sum_probs=137.7
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL 224 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~ 224 (622)
.++.|.+++..+++ +..|.| +.....|+.-......... ....+..+.|.+ +..++ ++..+.|.. ..+
T Consensus 39 ~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~-------~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~D 106 (327)
T 2xbg_A 39 LDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDH-------SDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTD 106 (327)
T ss_dssp EEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSC-------CCCEEEEEEEET-TEEEE-EEETTEEEE-ESS
T ss_pred EEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCC-------CCccEEEEEecC-CeEEE-EECCCeEEE-ECC
Confidence 58888877777775 456654 2233333322222111100 012467888876 44444 445564433 223
Q ss_pred CCceEEEec---cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110 225 TRGIAKIIS---AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMR 299 (622)
Q Consensus 225 ~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~ 299 (622)
.++.-..+. .+.+.+..+.+.+++..++.+ .++.|.. ....|+.-.... ....+..+.+.+++. +++++ ..
T Consensus 107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~ 182 (327)
T 2xbg_A 107 GGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVS-SR 182 (327)
T ss_dssp TTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEE-TT
T ss_pred CCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEE-CC
Confidence 333222222 233457788887777655554 4565432 223344333333 445788999999775 34444 44
Q ss_pred CcEEEE-Ee--cCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec----CCCCEEEEEEcC
Q psy2110 300 HAAVLV-DT--DGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA----STTAIKSIEFAR 372 (622)
Q Consensus 300 ~~i~~~-d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~ 372 (622)
+.++.- |- .+-..+. ......+..+.++++++.+++ +.+|.+++.+...++....+.. +...+.++++.+
T Consensus 183 G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 183 GSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp SSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred CcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 544433 32 1112221 123456778888888876654 5678777764333443333321 223588999998
Q ss_pred CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc-cceeeeeEEEcCCCCeEEEeeCCCCeEEEEE
Q psy2110 373 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWE 444 (622)
Q Consensus 373 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd 444 (622)
++..++++ .++.|. +..+. ...-..+.... ....+.++.|.+++++++++. +|.|.-++
T Consensus 260 ~~~~~~~g-~~g~i~-~S~Dg---------G~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~--~G~i~~~~ 319 (327)
T 2xbg_A 260 PNEVWLAG-GAGALL-CSQDG---------GQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ--KGILLRYV 319 (327)
T ss_dssp SSCEEEEE-STTCEE-EESST---------TSSCEECGGGTTSSSCCCEEEEEETTEEEEECS--TTEEEEEC
T ss_pred CCEEEEEe-CCCeEE-EeCCC---------CcccEEcCccCCCCCCeEEEEEECCCceEEEcC--CceEEEEc
Confidence 87766554 466663 33331 12222222111 123345677876666555544 77776655
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.20 E-value=6.6e-06 Score=87.59 Aligned_cols=214 Identities=6% Similarity=-0.089 Sum_probs=126.1
Q ss_pred eEEEEcCCCCEEEEee-CCCcEEEEecCC----cccccccccccCCCcccccccccceEEEEECCCCCEE-EEEeCCCeE
Q psy2110 145 VTCAFNKRGTLLAVGC-NDGRIVLWDFLT----RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRI 218 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~-~dg~i~vw~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i 218 (622)
..++|.+.+..|+.+. ..+.|+.+++.. ......+.... .....+++.+.+..| ++-...+.|
T Consensus 409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~-----------~~P~glavD~~~g~LY~tD~~~~~I 477 (699)
T 1n7d_A 409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-----------QAPDGLAVDWIHSNIYWTDSVLGTV 477 (699)
T ss_dssp CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC-------------CCCEECCCSSSBCEECCTTTSCE
T ss_pred EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC-----------CCcceEEEEeeCCcEEEEeccCCeE
Confidence 4889998776666554 457898888765 11111111100 123467887654444 444456789
Q ss_pred EEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-C-CcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEE
Q psy2110 219 VLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST-D-NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLV 295 (622)
Q Consensus 219 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d-~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~ 295 (622)
.++++........+.........|++.|.+.+|+.+.. . +.|..+++........+. .-.....|+|+|++..++++
T Consensus 478 ~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 478 SVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp EEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEE
T ss_pred EEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEE
Confidence 99998755444434333345678999986665555443 2 678887775433222222 22346789999998888888
Q ss_pred eeCCCcEEEEEecCCceeeccc--CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEE
Q psy2110 296 CPMRHAAVLVDTDGDHQIVPID--EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEF 370 (622)
Q Consensus 296 ~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 370 (622)
-...+.|..+++........+. ........+++..+ .++++....+.|..++..+++.+..+........+|++
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 8888899999987543222221 11122334455443 34445556678999998888877766543323334433
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.15 E-value=1.6e-05 Score=84.75 Aligned_cols=218 Identities=10% Similarity=-0.024 Sum_probs=130.8
Q ss_pred CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC----CceeecccCCCCceEEEEEeeCC
Q psy2110 257 DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG----DHQIVPIDEDSDLSIVASFDRRG 332 (622)
Q Consensus 257 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~ 332 (622)
.+.|+..++.+.+....+.....+..++|++.+..++++-...+.|+.+++.+ ......+.........+++++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 46788888887776655555556778999998887777777788999999875 22222222222234467787544
Q ss_pred -CEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecccccccCCCCCCCcceee
Q psy2110 333 -QHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG--DRLIRVYNHQEVLNAGKDGDPEPIQKL 409 (622)
Q Consensus 333 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~ 409 (622)
+++++-...+.|.++++........+.........|+++|.+.+|+.+.. .+.|.++++.. .. ...+
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG--------~~--~~~l 534 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--------VD--IYSL 534 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS--------CC--CCEE
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC--------CC--eeEE
Confidence 44444456678999998755444433333345678899997665655543 26777777652 11 1111
Q ss_pred eccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec--CCCCceeEEEECCCCCEEEEEe--CCcEEEe
Q psy2110 410 QDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG--TKGELLLDVVWHPVRPIIASIS--SGVVSLW 485 (622)
Q Consensus 410 ~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw 485 (622)
... .-.....++|+|++..|+.+....+.|+++++........+.. .... ...|++..+ .|+.+. .+.|..+
T Consensus 535 ~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~-P~glavd~~--~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 535 VTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH-PFSLAVFED--KVFWTDIINEAIFSA 610 (699)
T ss_dssp SCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSS-CCCCEEETT--EEEEECSTTTCEEEE
T ss_pred EeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCC-ceEeEEECC--EEEEEeCCCCeEEEE
Confidence 100 1112246899999888877776678999999875443333321 1122 445666443 444443 5778877
Q ss_pred ecC
Q psy2110 486 AQN 488 (622)
Q Consensus 486 ~~~ 488 (622)
+..
T Consensus 611 d~~ 613 (699)
T 1n7d_A 611 NRL 613 (699)
T ss_dssp ETT
T ss_pred Ecc
Confidence 753
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.12 E-value=0.0012 Score=63.85 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=118.5
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEEeCC------
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCND------ 215 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~d------ 215 (622)
+.++|.|+|+++++ ...|.|++++ ++.......... . .........++|+|+ +..|+++...
T Consensus 34 ~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v---~---~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 34 WALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSV---Y---HRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp EEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCC---C---CSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred eEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceE---e---ecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence 59999999985554 5669999988 333211110000 0 001134688999998 5555555432
Q ss_pred CeEEEEEcCCCc-----e-EEEec---cCCcCeeEEEEcCCCCEEEEEeCC-------------CcEEEEECCCC-----
Q psy2110 216 GRIVLWDFLTRG-----I-AKIIS---AHMHPVCSISWSRNGYKIISASTD-------------NNVCIWDVLTG----- 268 (622)
Q Consensus 216 g~i~iwd~~~~~-----~-~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d-------------~~i~iwd~~~~----- 268 (622)
+.|..++...+. . +..+. ...+....++|.|||.+.++.+.. |.|.-++....
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 578888876432 1 12232 112234689999999765554321 45555555420
Q ss_pred ---------cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcE------EEEEecCCc------------------eeec
Q psy2110 269 ---------ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAA------VLVDTDGDH------------------QIVP 315 (622)
Q Consensus 269 ---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i------~~~d~~~~~------------------~~~~ 315 (622)
..+... .......++|+|+...++++-.....+ .+.-+..+. +...
T Consensus 185 pf~~~~~~~~~i~a~-G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 PFLGRRGARPEVYSL-GHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTTCTTSCTTEEEE-CCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cccCCCCCCccEEEE-cCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 011111 112356788999444455554333321 122222111 1111
Q ss_pred ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE------EEEEecCCCCEEEEEEcCCCCEEEEEe
Q psy2110 316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL------KASFKASTTAIKSIEFARRGNCLLVNT 381 (622)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~ 381 (622)
+ .+......++| .+|..+++....+.|...++..... ...+-.....+..+++.|||.++++..
T Consensus 264 ~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 W-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp C-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred c-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2 11223456666 5676666666667787777653321 122223346789999999998666653
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.11 E-value=0.0012 Score=62.26 Aligned_cols=192 Identities=8% Similarity=0.117 Sum_probs=120.4
Q ss_pred CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC----CCCE--E-EEEe-C--CCeEEEE
Q psy2110 152 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK----RGTL--L-AVGC-N--DGRIVLW 221 (622)
Q Consensus 152 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~g~~--l-~~~~-~--dg~i~iw 221 (622)
...+++.....+-+.+||+ +|+.++.+.... +..+..-| .|+. + ++.. . +++|.+|
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~-------------~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf 104 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGK-------------LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIY 104 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCSC-------------EEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCCC-------------cccEEEecccccCCceEeEEEEeCCCCCCCeEEEE
Confidence 3446666677788999999 777777764311 22222222 2332 3 3333 3 5789999
Q ss_pred EcC--CCceEEEecc------CC-cCeeEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCcEEEEEeCCCCeE
Q psy2110 222 DFL--TRGIAKIISA------HM-HPVCSISW--SRN-GY-KIISASTDNNVCIWDVL-------TGECEQKYRFPSPIL 281 (622)
Q Consensus 222 d~~--~~~~~~~~~~------~~-~~v~~~~~--s~~-~~-~l~s~~~d~~i~iwd~~-------~~~~~~~~~~~~~v~ 281 (622)
++. ++. +..+.. .. ..+..+++ ++. ++ +++....+|.+..|++. +.+.++.+...+.+.
T Consensus 105 ~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~E 183 (355)
T 3amr_A 105 AIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTE 183 (355)
T ss_dssp EECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEE
T ss_pred EECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcc
Confidence 874 333 444421 11 56677888 664 44 67778888999999882 346678888888999
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEEEecC-----Cceeeccc--CCCCceEEEEE--eeCCC-EEEEEe-cCCeEEEEeCC
Q psy2110 282 KVQFHPRNDHMFLVCPMRHAAVLVDTDG-----DHQIVPID--EDSDLSIVASF--DRRGQ-HVVTGN-SKGKVLVLSCP 350 (622)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~-----~~~~~~~~--~~~~~~~~~~~--~~~~~-~l~~~~-~dg~i~i~d~~ 350 (622)
.+...+.... ++++..+..|..++.+. ...+..+. .-...+..+++ .++++ +|++.+ .+++..+||..
T Consensus 184 gcvvDd~~g~-Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 184 GMAADDEYGR-LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTTE-EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEcCCCCe-EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999987765 55566666677777552 23333322 11234666776 45555 566655 56799999986
Q ss_pred -CccEEEEEe
Q psy2110 351 -ALELKASFK 359 (622)
Q Consensus 351 -~~~~~~~~~ 359 (622)
+.+.+..|.
T Consensus 263 ~~~~~vg~f~ 272 (355)
T 3amr_A 263 GKNKYVADFR 272 (355)
T ss_dssp TTCCEEEEEE
T ss_pred CCCcEEEEEE
Confidence 566666665
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.10 E-value=0.006 Score=56.31 Aligned_cols=253 Identities=8% Similarity=0.048 Sum_probs=161.0
Q ss_pred CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCccccccccccc
Q psy2110 104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM 183 (622)
Q Consensus 104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 183 (622)
..|.|.|+..+....+..-..+ +.-.+|..+.||.-. ..++.++|+++...++.+....
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~Ad--------------------sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e 107 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISAD--------------------SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD 107 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCS--------------------EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS
T ss_pred CEEEEEECCCCCCccccccccc--------------------eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC
Confidence 5799999987665433322222 445688888888765 5789999999977666555432
Q ss_pred CCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceEEEeccCC----cCeeEEEEcCCCCEEEEEeC--
Q psy2110 184 HPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAKIISAHM----HPVCSISWSRNGYKIISAST-- 256 (622)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~-- 256 (622)
.|.-=.|-.+. .|+..+ +..|+-|++.. ..+.+.+..|. ..|.....+++.++++..+-
T Consensus 108 ------------~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~ 173 (365)
T 2xzh_A 108 ------------DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 173 (365)
T ss_dssp ------------CEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEE
T ss_pred ------------ccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEec
Confidence 24555665554 444443 46899999974 34555565443 46777788889998775442
Q ss_pred -----CCcEEEEECCCCcEEEEEe-CCCCeEEEEEe--CCCCeEEEEeeC---CCcEEEEEecCC---c-----eee---
Q psy2110 257 -----DNNVCIWDVLTGECEQKYR-FPSPILKVQFH--PRNDHMFLVCPM---RHAAVLVDTDGD---H-----QIV--- 314 (622)
Q Consensus 257 -----d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~~~~~~~---~~~i~~~d~~~~---~-----~~~--- 314 (622)
.|.+.+|..+.+.. +.+. |......+.+. +....+++.+.. .+.+.+.++... . +..
T Consensus 174 ~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~ 252 (365)
T 2xzh_A 174 QQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 252 (365)
T ss_dssp ETTEEEEEEEEEETTTTEE-EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEEC
T ss_pred cCCccceeEEEEeeccccc-ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceee
Confidence 36788998775432 3332 22211111111 111223333322 257888887432 1 111
Q ss_pred -cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 315 -PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 315 -~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
.-....+...++..++.-..++.-+.-|.+++||+.++.++..-+-....|..-+.+....-++.....|.|.--.++
T Consensus 253 fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 253 FPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp CCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred CCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEEC
Confidence 111235556678888888899999999999999999999999888888888776666555556666788887776666
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.05 E-value=0.0055 Score=57.19 Aligned_cols=157 Identities=10% Similarity=0.091 Sum_probs=107.7
Q ss_pred ccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCCC---------CeEEEEE---eCCCCeEEEEee--
Q psy2110 233 SAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGECEQKYRFPS---------PILKVQF---HPRNDHMFLVCP-- 297 (622)
Q Consensus 233 ~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~---------~v~~~~~---~~~~~~~~~~~~-- 297 (622)
......-.+++|.+....|+.++ ..++|..|+...+..... ..+. .+..+.| .|+++ ++++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~ 86 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNA 86 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEET
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEccc
Confidence 33444556789988556666666 689999999876654444 3222 3578999 57744 555433
Q ss_pred -----------CCCcEEEEEec---CCceeecccC-------------CCCceEEEEEeeCCCEEEEEecC-CeEEEEeC
Q psy2110 298 -----------MRHAAVLVDTD---GDHQIVPIDE-------------DSDLSIVASFDRRGQHVVTGNSK-GKVLVLSC 349 (622)
Q Consensus 298 -----------~~~~i~~~d~~---~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~ 349 (622)
.+..+..+|+. +++.+..... .......++.+++|+..++++.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 25678899998 5554432221 12347789999999999999988 88888886
Q ss_pred CCccEEEEEec------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 350 PALELKASFKA------STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 350 ~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
... .+..+.. .....+.|+++|+|+.|++....+.|..+|+.
T Consensus 167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp TSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 643 3332221 12236799999999999998779999999987
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.04 E-value=0.006 Score=58.90 Aligned_cols=227 Identities=13% Similarity=0.090 Sum_probs=121.7
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEEeC----C--
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCN----D-- 215 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~----d-- 215 (622)
+.++|.|+|++++ +..+|.|++++ .++. ..+.... .. .........++++|+ +..|+++.. +
T Consensus 32 ~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~--~~~~~~~--v~---~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 32 WSIAPLGGGRYLV-TERPGRLVLIS-PSGK--KLVASFD--VA---NVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp EEEEEEETTEEEE-EETTTEEEEEC-SSCE--EEEEECC--CC---CSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred eEEEEcCCCeEEE-EeCCCEEEEEe-CCCc--eEeeccc--ee---ecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 5999999998544 45669999987 3443 2221100 00 000124678999998 555555443 2
Q ss_pred --CeEEEEEcCCC--c-----eE-EEec-cCCcCeeEEEEcCCCCEEEEEeCC-------------CcEEEEECCCC---
Q psy2110 216 --GRIVLWDFLTR--G-----IA-KIIS-AHMHPVCSISWSRNGYKIISASTD-------------NNVCIWDVLTG--- 268 (622)
Q Consensus 216 --g~i~iwd~~~~--~-----~~-~~~~-~~~~~v~~~~~s~~~~~l~s~~~d-------------~~i~iwd~~~~--- 268 (622)
..|..|+.... . .+ ..+. ...+....|+|.|||.++++.+.. |.|.-++....
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 56777877644 1 11 1122 112235679999999866664321 34555554321
Q ss_pred ------cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC---cEEEEEecC----------------CceeecccCCCCce
Q psy2110 269 ------ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH---AAVLVDTDG----------------DHQIVPIDEDSDLS 323 (622)
Q Consensus 269 ------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~i~~~d~~~----------------~~~~~~~~~~~~~~ 323 (622)
..+....+ .....++|+|+...++++-.... .+.+..... ..++..+.......
T Consensus 183 ~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 183 DNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp TSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 01222212 33567999994444555433222 233222110 01112221123345
Q ss_pred EEEEEe-------eCCCEEEEEecCCeEEEEeCCCc-cEE--EEEe-cCCCCEEEEEEcCCCCEEEEEe
Q psy2110 324 IVASFD-------RRGQHVVTGNSKGKVLVLSCPAL-ELK--ASFK-ASTTAIKSIEFARRGNCLLVNT 381 (622)
Q Consensus 324 ~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~-~~~~~i~~~~~s~~~~~l~~~~ 381 (622)
..++|. .+|.++++.-..+.|...++... +.. ..+. .....+..+++.|||.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 667773 56777777667778888888753 332 2222 2245789999999997665553
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.01 E-value=0.009 Score=57.72 Aligned_cols=232 Identities=16% Similarity=0.131 Sum_probs=122.0
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe------CCCCeEEEEEeCC---CCeEEEEeeCC-----CcE
Q psy2110 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR------FPSPILKVQFHPR---NDHMFLVCPMR-----HAA 302 (622)
Q Consensus 237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~---~~~~~~~~~~~-----~~i 302 (622)
.....++|.|+|+. +.+...|.|++++ .++...... .......++++|+ +..++++.... ..|
T Consensus 31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 35679999999984 4455679999998 444322211 1356889999998 66666665543 567
Q ss_pred EEEEecCC-----ceeec-cc---CCCCceEEEEEeeCCCEEEEEec-------------CCeEEEEeCCCc--------
Q psy2110 303 VLVDTDGD-----HQIVP-ID---EDSDLSIVASFDRRGQHVVTGNS-------------KGKVLVLSCPAL-------- 352 (622)
Q Consensus 303 ~~~d~~~~-----~~~~~-~~---~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~-------- 352 (622)
..++.... +.+.. +. ........++|+|+|.++++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 77777643 11211 22 11223357899999976666432 256666665420
Q ss_pred ----cEEEEE-ecCCCCEEEEEEcC-CCCEEEEEeCCCcE------EEEecccccccC---------CCCCCCcceeeec
Q psy2110 353 ----ELKASF-KASTTAIKSIEFAR-RGNCLLVNTGDRLI------RVYNHQEVLNAG---------KDGDPEPIQKLQD 411 (622)
Q Consensus 353 ----~~~~~~-~~~~~~i~~~~~s~-~~~~l~~~~~d~~i------~i~d~~~~~~~~---------~~~~~~~~~~~~~ 411 (622)
.....+ .++ .....++|+| ++.++++-.....+ .+.-+......+ ..+...++..+
T Consensus 188 ~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-- 264 (352)
T 2ism_A 188 GRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-- 264 (352)
T ss_dssp TCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC--
T ss_pred CCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec--
Confidence 000111 122 2356789999 66655554333321 122222111000 00001122222
Q ss_pred cccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCee------EEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110 412 LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL------VKILHGTKGELLLDVVWHPVRPIIASIS 478 (622)
Q Consensus 412 ~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~v~~sp~~~~l~s~~ 478 (622)
..+.....++| .+|.++++... .+.|...++..... ...+-..... +.++++.|+|.+.++..
T Consensus 265 -~~~~ap~G~~~-~~G~l~v~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~r-p~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 -PQGFPPGNLAF-FRGDLYVAGLR-GQALLRLVLEGERGRWRVLRVETALSGFGR-LREVQVGPDGALYVTTS 333 (352)
T ss_dssp -TTCCCEEEEEE-ETTEEEEEETT-TTEEEEEEEEEETTEEEEEEEEEEEESSCC-EEEEEECTTSCEEEEEC
T ss_pred -CCCCCCcceEE-ECCEEEEEECC-CCEEEEEEECCCCcceeecchheecccCCC-eeEEEECCCCcEEEEEe
Confidence 11222345666 46665554443 67787777654321 1222222334 89999999998766654
No 306
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.95 E-value=0.0098 Score=55.77 Aligned_cols=245 Identities=8% Similarity=0.025 Sum_probs=139.1
Q ss_pred CCCCCEEEEEeC--CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC--------------CcEEEEECC
Q psy2110 203 NKRGTLLAVGCN--DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD--------------NNVCIWDVL 266 (622)
Q Consensus 203 s~~g~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--------------~~i~iwd~~ 266 (622)
+.+|..|+.... ++.|+..+... .....+... . +--++++|.+|+.+... ..|+..++.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg-~~~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDG-SNIHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTS-CSCEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCC-CCCEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 346777776642 45566666433 333444322 1 23457789988877643 367888887
Q ss_pred CCcEEEEEeCCCCeEEEEEeCCCCeEEEEe---eCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec-CC
Q psy2110 267 TGECEQKYRFPSPILKVQFHPRNDHMFLVC---PMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS-KG 342 (622)
Q Consensus 267 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg 342 (622)
.++........ +..++++++.++.+. .....|+..++....... +..+.. .+++++++.|+-.+. ..
T Consensus 97 g~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~-lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 97 GHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK-IKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp SCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEE-EESSCC----CCSEEETTEEEEECTTTC
T ss_pred CCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEE-EeCCCc----eEeeEECCEEEEEeCCCc
Confidence 76644433322 236778888877776 344456666665433222 222221 346788888876654 57
Q ss_pred eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEecccccccCCCCCCCcceeeeccccceeeee
Q psy2110 343 KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD--RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420 (622)
Q Consensus 343 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (622)
.|.+.++..+.....+. +... ..++|++.+|+..... ..|..-+++. ...+.+.. ..+
T Consensus 168 ~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG----------~~~~~Lt~----~~~-- 227 (302)
T 3s25_A 168 QLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN----------PNPVVLTE----ANI-- 227 (302)
T ss_dssp CEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS----------CCCEECSC----SCE--
T ss_pred eEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC----------CCeEEEeC----CCc--
Confidence 88888887665443333 2222 3466999988887654 3455555552 11122211 111
Q ss_pred EEEcCCCCeEEEee-CCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe--CCcEEEeec
Q psy2110 421 CCFSGDGEYVCAGS-ARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS--SGVVSLWAQ 487 (622)
Q Consensus 421 ~~~spdg~~l~~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw~~ 487 (622)
..|+|+|++|..+. ...+.|+..++..........+ . +. ++++.+.+|+... .+.|..-++
T Consensus 228 ~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~---~-~~--~i~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 228 EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG---E-FC--NINVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES---C-EE--EEEECSSEEEEEETTTCCEEEEES
T ss_pred ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC---c-cc--eEEEeCCEEEEEECCCCeEEEEEC
Confidence 25889999998763 2246788888865443333333 1 33 4555777777776 455443333
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.94 E-value=0.0062 Score=56.85 Aligned_cols=202 Identities=9% Similarity=0.061 Sum_probs=123.1
Q ss_pred eEEEEcCCCCEEEEee-CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEE---CCCCCEEEEEe-------
Q psy2110 145 VTCAFNKRGTLLAVGC-NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAF---NKRGTLLAVGC------- 213 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~g~~l~~~~------- 213 (622)
.+++|.+....|..++ ..++|..|+...+......-.... ..+ .....+..+.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s--~~g--~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS--SNG--DGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTC--CSS--CCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcc--ccC--CCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 4789988666666666 789999999875543322111100 000 00123578999 68887777543
Q ss_pred ------CCCeEEEEEcC---CCceEEEec--c-----------CCcCeeEEEEcCCCCEEEEEeCC-CcEEEEECCCCcE
Q psy2110 214 ------NDGRIVLWDFL---TRGIAKIIS--A-----------HMHPVCSISWSRNGYKIISASTD-NNVCIWDVLTGEC 270 (622)
Q Consensus 214 ------~dg~i~iwd~~---~~~~~~~~~--~-----------~~~~v~~~~~s~~~~~l~s~~~d-~~i~iwd~~~~~~ 270 (622)
.+..+..||+. +++.+.... . -......++..++|+..++++.. +.|...+......
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 15779999998 777655433 1 11347899999999999988888 8887777654433
Q ss_pred EEEEe-C-----CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce-eeccc--C---CCCceEE-EEEeeCCCEEE-
Q psy2110 271 EQKYR-F-----PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ-IVPID--E---DSDLSIV-ASFDRRGQHVV- 336 (622)
Q Consensus 271 ~~~~~-~-----~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~--~---~~~~~~~-~~~~~~~~~l~- 336 (622)
...+. . ....+.++++|++..+++..+ .+.+..+|+..... ..... + ....... +....+|+.++
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 22221 1 123669999999987777766 99999999885322 01111 1 1122233 34445777744
Q ss_pred EEecCCeEEEEeCCC
Q psy2110 337 TGNSKGKVLVLSCPA 351 (622)
Q Consensus 337 ~~~~dg~i~i~d~~~ 351 (622)
+....+.+.+.+...
T Consensus 251 ~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 251 GARAPYAISFRSWDN 265 (334)
T ss_dssp EEETTEEEEEECSST
T ss_pred EcCCCCEEEEECCCC
Confidence 444455555555443
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.92 E-value=0.0021 Score=61.53 Aligned_cols=205 Identities=11% Similarity=0.116 Sum_probs=115.4
Q ss_pred CeeEEEEcCCCCEEEEE------------eCCCcEEEEECCC--CcEEEEEeC--------CCCeEEEEEeC--CCC-eE
Q psy2110 238 PVCSISWSRNGYKIISA------------STDNNVCIWDVLT--GECEQKYRF--------PSPILKVQFHP--RND-HM 292 (622)
Q Consensus 238 ~v~~~~~s~~~~~l~s~------------~~d~~i~iwd~~~--~~~~~~~~~--------~~~v~~~~~~~--~~~-~~ 292 (622)
....+...++|..++++ ..+|.|.++|..+ ++. ..+.. ......+.+.+ ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 34556667766444443 1688999999873 332 22221 13567777766 344 34
Q ss_pred EEEeeC--CCcEEEEEecCCce----eecccC-CCCceEEEEEeeCCCEEEEEe-----------------cCCeEEEEe
Q psy2110 293 FLVCPM--RHAAVLVDTDGDHQ----IVPIDE-DSDLSIVASFDRRGQHVVTGN-----------------SKGKVLVLS 348 (622)
Q Consensus 293 ~~~~~~--~~~i~~~d~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d 348 (622)
+++... +..+.+|++..... +..+.. .-.....+.+.++|.++++.. ..|.|.-++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 45677877764321 222222 223467889999998877754 125566666
Q ss_pred CCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC-C
Q psy2110 349 CPALELKASFKASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG-D 426 (622)
Q Consensus 349 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-d 426 (622)
.. +.. .+...-..-+.++|+||++.|+++. ..+.|+.|++.. .+.....+.+. . ....-.+++.+ +
T Consensus 210 ~~--~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~------~g~l~~~~~~~-~--~g~PDGi~vD~e~ 277 (355)
T 3sre_A 210 PN--DVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA------NWTLTPLRVLS-F--DTLVDNISVDPVT 277 (355)
T ss_dssp TT--CCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT------TSCEEEEEEEE-C--SSEEEEEEECTTT
T ss_pred CC--eEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC------CCcEecCEEEe-C--CCCCceEEEeCCC
Confidence 53 322 2222234568999999999888775 478899999873 11111222221 1 22335678999 5
Q ss_pred CCeEEEeeCCCCeEEEEECC--CCeeEEEEe
Q psy2110 427 GEYVCAGSARQHALYIWEKS--VGNLVKILH 455 (622)
Q Consensus 427 g~~l~~~~~~d~~i~iwd~~--~~~~~~~~~ 455 (622)
|++.+++..+.+.|..|+.. .+..+..++
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 98877665323344445443 244444444
No 309
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.91 E-value=0.0076 Score=56.54 Aligned_cols=210 Identities=10% Similarity=0.053 Sum_probs=122.7
Q ss_pred EcCCCCEEEEeeC--CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-----------
Q psy2110 149 FNKRGTLLAVGCN--DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND----------- 215 (622)
Q Consensus 149 ~s~d~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----------- 215 (622)
|+.++.+|+.... ++.|...+.... ....+.. -.+--++++|.+|+.+...
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~-~~~~l~~---------------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~ 84 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGS-NIHKLSN---------------DTAMYINADKNYVYYVRNNNQKITSQTFFS 84 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSC-SCEEEEE---------------EEEEEEEECSSEEEEEEECC------CCSS
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCC-CCEEccC---------------CceeeEEEcCCEEEEEECCCCcccccceec
Confidence 4456777766542 344444444332 2333322 1234568899988887653
Q ss_pred ---CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe----CCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCC
Q psy2110 216 ---GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS----TDNNVCIWDVLTGECEQKYRFPSPILKVQFHPR 288 (622)
Q Consensus 216 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 288 (622)
..|+..++...+.. .+... .+..|++++++|+... ....|...++......+...... ..++++
T Consensus 85 ~n~~~Iy~i~~dg~~~~-~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~ 155 (302)
T 3s25_A 85 YDRNSLCRIKRNGHGST-VLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTS 155 (302)
T ss_dssp CCSEEEEEEETTSCCCE-EEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEE
T ss_pred cCCCeEEEEeCCCCcce-EeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEE
Confidence 35777777655433 23222 1236777899888776 23456777776555444444432 456888
Q ss_pred CCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC--CeEEEEeCCCccEEEEEecCCCCEE
Q psy2110 289 NDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK--GKVLVLSCPALELKASFKASTTAIK 366 (622)
Q Consensus 289 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~ 366 (622)
++.++.+......|...++........+.. .. ...+.|++.+|+-.... ..|..-++..... ..+.. ..+
T Consensus 156 g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~- 227 (302)
T 3s25_A 156 DRYFYYNNPKNGQLYRYDTASQSEALFYDC---NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI- 227 (302)
T ss_dssp TTEEEEECTTTCCEEEEETTTTEEEEEECS---CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE-
T ss_pred CCEEEEEeCCCceEEEEECCCCCEEEEeCC---Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc-
Confidence 988887776567888888876654433322 22 23466889888776543 3677777765442 33322 233
Q ss_pred EEEEcCCCCEEEEEeC--CCcEEEEecc
Q psy2110 367 SIEFARRGNCLLVNTG--DRLIRVYNHQ 392 (622)
Q Consensus 367 ~~~~s~~~~~l~~~~~--d~~i~i~d~~ 392 (622)
..|+|++.+|..++. ...|..-+++
T Consensus 228 -~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 228 -EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp -EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred -ceEEECCCEEEEEECCCCcEEEEEECC
Confidence 347888998887643 3556666665
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.91 E-value=0.014 Score=53.89 Aligned_cols=264 Identities=8% Similarity=0.050 Sum_probs=159.3
Q ss_pred CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEE
Q psy2110 215 DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFL 294 (622)
Q Consensus 215 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 294 (622)
..+|.|.|+.++....+..- .--+.-.+|..+.||.-. ..+++++|+++.+.++.+....+|.-=.|-.+.. +.+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~-L~l 122 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VAL 122 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSE-EEE
T ss_pred CCEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCe-EEE
Confidence 34789999987654422111 112344588887776665 6789999999999999999989988888876654 333
Q ss_pred EeeCCCcEEEEEecCC-ceeecccCC----CCceEEEEEeeCCCEEEEEe-------cCCeEEEEeCCCccEEEEEecCC
Q psy2110 295 VCPMRHAAVLVDTDGD-HQIVPIDED----SDLSIVASFDRRGQHVVTGN-------SKGKVLVLSCPALELKASFKAST 362 (622)
Q Consensus 295 ~~~~~~~i~~~d~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~ 362 (622)
++ +..++-|++... .+...+..| ...|.....+++.++++..+ -.|.+.+|..+. +.-+.+++|.
T Consensus 123 VT--~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha 199 (365)
T 2xzh_A 123 VT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 199 (365)
T ss_dssp EE--SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSE
T ss_pred Ec--CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeee
Confidence 33 567999998743 333333322 45566677788888876533 236788998764 4556677775
Q ss_pred CCEEEEEEcCC---CCEEEEEeC---CCcEEEEecccccccCCCCCCCcceeeeccc-cceeeeeEEEcCCCCeEEEeeC
Q psy2110 363 TAIKSIEFARR---GNCLLVNTG---DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSA 435 (622)
Q Consensus 363 ~~i~~~~~s~~---~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~ 435 (622)
..-..+.+.-+ .+.|+.+.. .+.++|.++.........-..+.+..+.... ....-.++..|+.-..+..-+.
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK 279 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 279 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC
Confidence 44333332211 123444432 2578898885321000000001111111111 1122346788887777877776
Q ss_pred CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110 436 RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN 488 (622)
Q Consensus 436 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~ 488 (622)
-|.|++||+.+|.++..-+-..+. |..-+-+....-++... .|.|.--.++
T Consensus 280 -~G~ihlyDleTgt~i~~nrIS~d~-iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 280 -YGYIHLYDLETGTCIYMNRISGET-IFVTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp -TSEEEEEETTTCCEEEEEECCSSC-EEEEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred -CcEEEEEEcccCcEEEEeccCCCc-eEEecccCCCCcEEEEcCCCEEEEEEEC
Confidence 889999999999998877655544 55555544444444444 7776655554
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.89 E-value=0.02 Score=55.14 Aligned_cols=255 Identities=7% Similarity=0.030 Sum_probs=162.4
Q ss_pred CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccc
Q psy2110 103 QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH 182 (622)
Q Consensus 103 ~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 182 (622)
+..|.|.|+.++..+.+..-..+ +.-.+|..+.||.-. ..++.|+|+++...++.+...
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~Ad--------------------sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~ 105 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISAD--------------------SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT 105 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCS--------------------EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS
T ss_pred CCeEEEEECCCCCcceecccccc--------------------eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC
Confidence 35899999987665533322222 445688888887765 579999999987666655443
Q ss_pred cCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceEEEeccCC----cCeeEEEEcCCCCEEEEEeC-
Q psy2110 183 MHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAKIISAHM----HPVCSISWSRNGYKIISAST- 256 (622)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~- 256 (622)
. .|.-=.|-.+ +.|+..+ +..|+-|++.. ..+.+.+..|. ..|.....+++.++++..+-
T Consensus 106 e------------~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~ 171 (494)
T 1bpo_A 106 D------------DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGIS 171 (494)
T ss_dssp S------------CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEE
T ss_pred C------------CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeec
Confidence 2 1233344333 3454443 56899999974 34556665443 46777788899998875432
Q ss_pred ------CCcEEEEECCCCcEEEEEeCCCCeEEEEEeC--CCCeEEEEeeC---CCcEEEEEecCC--------ceeec--
Q psy2110 257 ------DNNVCIWDVLTGECEQKYRFPSPILKVQFHP--RNDHMFLVCPM---RHAAVLVDTDGD--------HQIVP-- 315 (622)
Q Consensus 257 ------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~---~~~i~~~d~~~~--------~~~~~-- 315 (622)
.|.+.+|..+.+.....-.|......+.+.. ....+++.+.. .+.+.+.++... ++...
T Consensus 172 ~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~ 251 (494)
T 1bpo_A 172 AQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 251 (494)
T ss_dssp EETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECC
T ss_pred ccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeee
Confidence 3678899887654322211222222222211 11123333322 367888888543 11111
Q ss_pred --ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 316 --IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 316 --~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
-....+...++..++.-..++.-+.-|.+++||+.++.++..-+-....|...+.+....-++.....|.|.--.++
T Consensus 252 fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 252 FPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp CCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred CCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 11235556688889888899999999999999999999999888888888777776666667777788887777666
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.88 E-value=0.0019 Score=61.06 Aligned_cols=228 Identities=11% Similarity=0.089 Sum_probs=117.3
Q ss_pred CCCEEEEec-CC----CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC----
Q psy2110 92 DGEYVCAGS-AR----QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND---- 162 (622)
Q Consensus 92 ~~~~l~~~~-~~----~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---- 162 (622)
++..++.|+ .+ ...+.+||..+++-...-....... . .+++ ..++.+++.|+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------------~----~~~~-~~~~~l~v~GG~~~~~~ 76 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRR------------Y----VASV-SLHDRIYVIGGYDGRSR 76 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCB------------S----CEEE-EETTEEEEECCBCSSCB
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhc------------c----ccEE-EECCEEEEEcCCCCCcc
Confidence 456666766 22 1368888987765332111111000 0 1222 2356777777754
Q ss_pred -CcEEEEecCCcc---cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCceEEE--
Q psy2110 163 -GRIVLWDFLTRG---IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-----GRIVLWDFLTRGIAKI-- 231 (622)
Q Consensus 163 -g~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~iwd~~~~~~~~~-- 231 (622)
..+.+||..++. -...-..... . .....+.+ ++++++.|+.+ ..+.+||+.+.+....
T Consensus 77 ~~~~~~~d~~~~~~~~W~~~~~~p~~--r-------~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 145 (301)
T 2vpj_A 77 LSSVECLDYTADEDGVWYSVAPMNVR--R-------GLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD 145 (301)
T ss_dssp CCCEEEEETTCCTTCCCEEECCCSSC--C-------BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred CceEEEEECCCCCCCeeEECCCCCCC--c-------cceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCC
Confidence 468899988765 2222111110 0 11122222 56677777643 3688899887654322
Q ss_pred eccCCcCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEeCCCCe--EEEEEeCCCCeEEEEeeCC-----
Q psy2110 232 ISAHMHPVCSISWSRNGYKIISASTD-----NNVCIWDVLTGECEQKYRFPSPI--LKVQFHPRNDHMFLVCPMR----- 299 (622)
Q Consensus 232 ~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~----- 299 (622)
+......-..+.+ +++.++.|+.+ ..+.+||+.+.+....-..+.+. .++... +..+++.++.+
T Consensus 146 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~ 221 (301)
T 2vpj_A 146 MQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHL 221 (301)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBC
T ss_pred CCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCccc
Confidence 2211111122222 66667776654 46899999888765543322221 122222 44577777654
Q ss_pred CcEEEEEecCCcee--ecccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCcc
Q psy2110 300 HAAVLVDTDGDHQI--VPIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALE 353 (622)
Q Consensus 300 ~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 353 (622)
..+.+||+.+..-. ..+........ +..-+++.++.|+.+ ..+.+||+.+.+
T Consensus 222 ~~v~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 222 SSVEAYNIRTDSWTTVTSMTTPRCYVG--ATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCE--EEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ceEEEEeCCCCcEEECCCCCCccccee--EEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 46888998765322 22222111112 222367777777655 357788877654
No 313
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.86 E-value=0.02 Score=56.94 Aligned_cols=308 Identities=10% Similarity=0.046 Sum_probs=163.6
Q ss_pred EEEEeeCCCcEEEEecCCcccccccccccCCCccc---------------cccc-ccceEEEEEC---CCCCEEEEEe-C
Q psy2110 155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDG---------------ALDC-ISLAVTCAFN---KRGTLLAVGC-N 214 (622)
Q Consensus 155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~v~~~~~s---~~g~~l~~~~-~ 214 (622)
.+.+|+..|.|+|+-+.+++.+..+.........+ .+.. ...-..+++. -||++|+... .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 46788899999999999887776654332221100 0000 0001123332 2678888876 4
Q ss_pred CCeEEEEEcCCCceEEEec-cCCcCeeEEEEc--CCCCEEEEEeC-------CCcE------------EEEECCCCcEEE
Q psy2110 215 DGRIVLWDFLTRGIAKIIS-AHMHPVCSISWS--RNGYKIISAST-------DNNV------------CIWDVLTGECEQ 272 (622)
Q Consensus 215 dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~s~~~-------d~~i------------~iwd~~~~~~~~ 272 (622)
+..|...++...++-+.+. .....+.+++|- |+..+++.++. ||.. ...|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 6778888888877665554 345678888886 67788888775 2221 011222222222
Q ss_pred EEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEe--------eCCCEEEEEecCC-e
Q psy2110 273 KYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFD--------RRGQHVVTGNSKG-K 343 (622)
Q Consensus 273 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~dg-~ 343 (622)
++..+.....+...+++.+.+.++... +....+..... ...=..+.|+ .+|++-.. +| .
T Consensus 232 Qv~v~gnld~~~~~~~g~~af~t~yNs--------E~~~~l~em~~-~e~D~~~vfn~~~ie~~vk~G~~~~~---~g~g 299 (638)
T 3sbq_A 232 QVIVDGNLDNTDADYTGRFAAATCYNS--------EKAFDLGGMMR-NERDWVVVFDIHAVEAAVKAGDFITL---GDSK 299 (638)
T ss_dssp EEEESSCCCCEEECSSSSEEEEEESCT--------TCCSSHHHHTC-SSCEEEEEEEHHHHHHHHHTTCCBCC---TTCC
T ss_pred EEEcCCChhhcCCCCCCCEEEEeeecc--------ccCcChhhcCc-ccccEEEEecHHHHHHHHhcCCeEEE---CCCC
Confidence 222223333344445555433333211 11111111111 1111122222 23443321 21 3
Q ss_pred EEEEeCCC----ccEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCCC--CCCcceeeeccccce
Q psy2110 344 VLVLSCPA----LELKASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDG--DPEPIQKLQDLVNKT 416 (622)
Q Consensus 344 i~i~d~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~ 416 (622)
+.+.|.+. +..+..+-.-......+..+|||+++++++. +.++.++++......-..+ .++....-+ .....
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae-~e~Gl 378 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE-PELGL 378 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC-CBCCS
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee-ccCCC
Confidence 77888776 3322222223344558899999999998876 7889999998543321111 111111111 11222
Q ss_pred eeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC----------eeEEEEecCCCCceeEEEE------CCCCCEEEEEe
Q psy2110 417 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVG----------NLVKILHGTKGELLLDVVW------HPVRPIIASIS 478 (622)
Q Consensus 417 ~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~~v~~v~~------sp~~~~l~s~~ 478 (622)
.-...+|.++| ...+.-.-|..|.-|++... ..+..+.-|.. +-.+.- .|+|++|++..
T Consensus 379 GPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq--pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 379 GPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ--PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp CEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC--EEEEEETTTTSTTCCSCEEEEEE
T ss_pred cccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC--CcccccCCCccCCCCccEEEEec
Confidence 33456999999 45455444889999998653 45666766654 344433 68899999875
No 314
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.81 E-value=0.028 Score=54.19 Aligned_cols=232 Identities=16% Similarity=0.134 Sum_probs=124.7
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEEe----CCCCeEEEEEeCC---CCeEEEEeeC---C----Cc
Q psy2110 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGE-CEQKYR----FPSPILKVQFHPR---NDHMFLVCPM---R----HA 301 (622)
Q Consensus 237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~----~~~~v~~~~~~~~---~~~~~~~~~~---~----~~ 301 (622)
.....++|.|+|+ |+.+..+|.|++++ .+++ .+..+. .......++++|+ +..++++... + ..
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4567899999997 55556679999997 4554 222111 2356889999998 5656665442 3 56
Q ss_pred EEEEEecCC-------ceeec-cc-CCCCceEEEEEeeCCCEEEEEec-------------CCeEEEEeCCCc-------
Q psy2110 302 AVLVDTDGD-------HQIVP-ID-EDSDLSIVASFDRRGQHVVTGNS-------------KGKVLVLSCPAL------- 352 (622)
Q Consensus 302 i~~~d~~~~-------~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~------- 352 (622)
|..++.... +.+.. +. ........++|.|+|.++++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777776543 11111 21 11123456899999987776432 256666665421
Q ss_pred -c-EEEEEecCCCCEEEEEEcC-CCCEEEEEeCCC---cEEEEecccccccC---------CCCCCCcceeeecccccee
Q psy2110 353 -E-LKASFKASTTAIKSIEFAR-RGNCLLVNTGDR---LIRVYNHQEVLNAG---------KDGDPEPIQKLQDLVNKTM 417 (622)
Q Consensus 353 -~-~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~---~i~i~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 417 (622)
. .+. ..++ .....++|+| +++++++-.... .|.+.... ...+ ..+...++..+. ..+..
T Consensus 187 ~~~~i~-a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G--~nyGwp~~~g~~~~~~~~~p~~~~~--~~~~a 260 (354)
T 3a9g_A 187 PNSPIW-SYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKG--GNYGWPLATGKAGRGEFVDPVIDTG--SETWA 260 (354)
T ss_dssp TTCCEE-EECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTT--CBCCTTTCCSCCCCTTSCCCSEECT--TCCCC
T ss_pred CCCcEE-EEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCC--CcCCCCcccCCCCCCCCcCCEeecC--CCCcC
Confidence 0 111 1233 2345899999 666555443222 23332211 0000 000011222220 12233
Q ss_pred eeeEEEc-------CCCCeEEEeeCCCCeEEEEECCCC-eeE--EEE-ecCCCCceeEEEECCCCCEEEEEe
Q psy2110 418 WKKCCFS-------GDGEYVCAGSARQHALYIWEKSVG-NLV--KIL-HGTKGELLLDVVWHPVRPIIASIS 478 (622)
Q Consensus 418 ~~~~~~s-------pdg~~l~~~~~~d~~i~iwd~~~~-~~~--~~~-~~~~~~~v~~v~~sp~~~~l~s~~ 478 (622)
...++|. .+|+++++... .+.|...++... +.. ..+ .+... .+.++++.|+|.+.++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~-~~~v~~~~~~~~g~~~~~~~~~~~~~~-rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLR-GSMLAAVNFGDNMEVRKISTFFKNVFG-RLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETT-TTEEEEEEECGGGCEEEEEEECTTTSC-CEEEEEECTTSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcC-CCEEEEEEECCCCcccceeeeccCCCC-CeeEEEECCCCcEEEEEe
Confidence 4567773 56766665544 778888888753 332 223 22223 389999999997666553
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.79 E-value=0.002 Score=60.85 Aligned_cols=222 Identities=11% Similarity=0.081 Sum_probs=113.1
Q ss_pred CCCEEEEee-CC-----CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-----CeEEE
Q psy2110 152 RGTLLAVGC-ND-----GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-----GRIVL 220 (622)
Q Consensus 152 d~~~l~s~~-~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~i 220 (622)
++.+++.|+ .+ ..+.+||..+++-...-..... . .....+. .++++++.|+.+ ..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r-------~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~ 82 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK--R-------RYVASVS--LHDRIYVIGGYDGRSRLSSVEC 82 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC--C-------BSCEEEE--ETTEEEEECCBCSSCBCCCEEE
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh--h-------ccccEEE--ECCEEEEEcCCCCCccCceEEE
Confidence 445666666 32 3688888877643222111110 0 0112222 246677777654 46889
Q ss_pred EEcCCCc---eEEE--eccCCcCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEeCCCCe--EEEEEeCC
Q psy2110 221 WDFLTRG---IAKI--ISAHMHPVCSISWSRNGYKIISASTD-----NNVCIWDVLTGECEQKYRFPSPI--LKVQFHPR 288 (622)
Q Consensus 221 wd~~~~~---~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~ 288 (622)
||+.+.+ .... +.........+.+ +++.++.|+.+ ..+.+||+.+.+....-..+.+. .+++..
T Consensus 83 ~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 158 (301)
T 2vpj_A 83 LDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-- 158 (301)
T ss_dssp EETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--
T ss_pred EECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--
Confidence 9988766 3322 2111112222222 56666666643 35899999888765544332221 122222
Q ss_pred CCeEEEEeeCC-----CcEEEEEecCCcee--ecccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCccEEE
Q psy2110 289 NDHMFLVCPMR-----HAAVLVDTDGDHQI--VPIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALELKA 356 (622)
Q Consensus 289 ~~~~~~~~~~~-----~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~ 356 (622)
+..+++.|+.+ ..+..||+.+..-. ..+........ +...+++.++.|+.+ ..+.+||+.+.+-..
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAG--VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCE--EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccce--EEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 34577776654 45788888765322 22222111112 222366777777754 468999998765433
Q ss_pred EEecC--CCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecc
Q psy2110 357 SFKAS--TTAIKSIEFARRGNCLLVNTGD-----RLIRVYNHQ 392 (622)
Q Consensus 357 ~~~~~--~~~i~~~~~s~~~~~l~~~~~d-----~~i~i~d~~ 392 (622)
.-... ......+.+ +++.++.++.+ ..+.+||+.
T Consensus 237 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 237 VTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETT
T ss_pred CCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCC
Confidence 22111 111122222 56666666544 346777766
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.76 E-value=0.034 Score=53.65 Aligned_cols=230 Identities=9% Similarity=0.068 Sum_probs=118.2
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEEeC-------
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCN------- 214 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~------- 214 (622)
+.|+|.|+|+.|+++...|.|++++.. +.....+... ... ..........++++|+ +..|+++..
T Consensus 21 ~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~-~~v---~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 21 WALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGV-PDV---WAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp EEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSC-CCC---CCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred EEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCC-ccc---ccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 599999999834455567999998743 3221111110 000 0001124578999996 555554432
Q ss_pred -CCeEEEEEcCCC--c--eEE-E---ec---cCCcCeeEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCc
Q psy2110 215 -DGRIVLWDFLTR--G--IAK-I---IS---AHMHPVCSISWSRNGYKIISASTD-------------NNVCIWDVLTGE 269 (622)
Q Consensus 215 -dg~i~iwd~~~~--~--~~~-~---~~---~~~~~v~~~~~s~~~~~l~s~~~d-------------~~i~iwd~~~~~ 269 (622)
...|..|++... . ... . +. ...+....|+|.|||.+.++.+.. |.|.-++....-
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666666532 1 111 1 11 111234679999999655554331 356666654320
Q ss_pred ------------EEEEEe-CCCCeEEEEEeCCCCeEEEEeeC-CCcEEEEEecCCce-----------------------
Q psy2110 270 ------------CEQKYR-FPSPILKVQFHPRNDHMFLVCPM-RHAAVLVDTDGDHQ----------------------- 312 (622)
Q Consensus 270 ------------~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~----------------------- 312 (622)
....+. .......++|+|....++++-.. ++.-.+.-+..+..
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 111111 22346789999944445544322 21112211111100
Q ss_pred --------eecccCCCCceEEEEEee-------CCCEEEEEecCCeEEEEeCCCccEEEEEe---cCCCCEEEEEEcCCC
Q psy2110 313 --------IVPIDEDSDLSIVASFDR-------RGQHVVTGNSKGKVLVLSCPALELKASFK---ASTTAIKSIEFARRG 374 (622)
Q Consensus 313 --------~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~ 374 (622)
+..+. +......+.|.. +|.++++....+.|...++..++...... .....+..+++.|||
T Consensus 256 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 256 IVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp SCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 00011 112345566653 46677776677888888877654433221 234578999999999
Q ss_pred CEEEEE
Q psy2110 375 NCLLVN 380 (622)
Q Consensus 375 ~~l~~~ 380 (622)
.++++.
T Consensus 335 ~lyv~t 340 (353)
T 2g8s_A 335 YLYVLT 340 (353)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 855543
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.75 E-value=0.0098 Score=56.20 Aligned_cols=226 Identities=12% Similarity=0.099 Sum_probs=116.0
Q ss_pred CEEEEecCC-CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC----CcEEEE
Q psy2110 94 EYVCAGSAR-QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND----GRIVLW 168 (622)
Q Consensus 94 ~~l~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d----g~i~vw 168 (622)
..++.|+.. ...+.+||..+++-...-....... . .+++. -++.+++.|+.+ ..+.+|
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~------------~----~~~~~-~~~~lyv~GG~~~~~~~~~~~~ 75 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRR------------D----AACVF-WDNVVYILGGSQLFPIKRMDCY 75 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCB------------S----CEEEE-ETTEEEEECCBSSSBCCEEEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccc------------e----eEEEE-ECCEEEEEeCCCCCCcceEEEE
Confidence 345555532 3578899988765432211000000 0 12222 366777777754 568888
Q ss_pred ecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC------CeEEEEEcCCCceEEE--eccCCcCee
Q psy2110 169 DFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND------GRIVLWDFLTRGIAKI--ISAHMHPVC 240 (622)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~ 240 (622)
|..+++-...-...... .....+.+ ++++++.|+.+ ..+.+||..+.+-... +........
T Consensus 76 d~~~~~W~~~~~~p~~r---------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 144 (306)
T 3ii7_A 76 NVVKDSWYSKLGPPTPR---------DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHG 144 (306)
T ss_dssp ETTTTEEEEEECCSSCC---------BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred eCCCCeEEECCCCCccc---------cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeE
Confidence 88876433221111100 01122222 56677777654 4588999887754332 111111112
Q ss_pred EEEEcCCCCEEEEEeC---------CCcEEEEECCCCcEEEEEeCCCCe--EEEEEeCCCCeEEEEeeCC-----CcEEE
Q psy2110 241 SISWSRNGYKIISAST---------DNNVCIWDVLTGECEQKYRFPSPI--LKVQFHPRNDHMFLVCPMR-----HAAVL 304 (622)
Q Consensus 241 ~~~~s~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~-----~~i~~ 304 (622)
.+. -+++.++.|+. -..+.+||+.+.+....-..+.+. .++... +..+++.|+.+ ..+.+
T Consensus 145 ~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~ 220 (306)
T 3ii7_A 145 MVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEY 220 (306)
T ss_dssp EEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEE
T ss_pred EEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEE
Confidence 222 25666666653 345899999988655543322221 122222 34577776643 35788
Q ss_pred EEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCcc
Q psy2110 305 VDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALE 353 (622)
Q Consensus 305 ~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 353 (622)
||+.+..- +..+.........+. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 221 yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 221 YDIKLNEWKMVSPMPWKGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EETTTTEEEECCCCSCCBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred eeCCCCcEEECCCCCCCccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 88876532 222222222222222 267777888744 468889987755
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.74 E-value=0.0049 Score=58.17 Aligned_cols=228 Identities=13% Similarity=0.116 Sum_probs=114.2
Q ss_pred CCCEEEEecCCC---CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC-----C
Q psy2110 92 DGEYVCAGSARQ---HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND-----G 163 (622)
Q Consensus 92 ~~~~l~~~~~~~---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----g 163 (622)
++..++.|+.+. ..+.+||..+.+-...-....... . .+++. -++.+++.|+.+ .
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------------~----~~~~~-~~~~lyv~GG~~~~~~~~ 77 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRC------------R----AGMVY-MAGLVFAVGGFNGSLRVR 77 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCB------------S----CEEEE-ETTEEEEESCBCSSSBCC
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccc------------c----ceEEE-ECCEEEEEeCcCCCcccc
Confidence 445666666432 357888887765332211111000 0 12222 267777777754 3
Q ss_pred cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC-----eEEEEEcCCCceEEE--eccCC
Q psy2110 164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG-----RIVLWDFLTRGIAKI--ISAHM 236 (622)
Q Consensus 164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~~~ 236 (622)
.+.+||..+.+-...-...... .....+.+ ++++++.|+.++ .+.+||+.+.+.... +....
T Consensus 78 ~~~~~d~~~~~W~~~~~~p~~r---------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 146 (302)
T 2xn4_A 78 TVDSYDPVKDQWTSVANMRDRR---------STLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR 146 (302)
T ss_dssp CEEEEETTTTEEEEECCCSSCC---------BSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred ceEEECCCCCceeeCCCCCccc---------cceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc
Confidence 5888888776433221111100 01122222 567777776543 477888877654332 11111
Q ss_pred cCeeEEEEcCCCCEEEEEeCC-------CcEEEEECCCCcEEEEEeCCCCe--EEEEEeCCCCeEEEEeeCC-----CcE
Q psy2110 237 HPVCSISWSRNGYKIISASTD-------NNVCIWDVLTGECEQKYRFPSPI--LKVQFHPRNDHMFLVCPMR-----HAA 302 (622)
Q Consensus 237 ~~v~~~~~s~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~-----~~i 302 (622)
.....+.+ +++.++.|+.+ ..+.+||+.+.+....-..+.+. .+++.. +..+++.++.+ ..+
T Consensus 147 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 222 (302)
T 2xn4_A 147 SSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSV 222 (302)
T ss_dssp BSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCE
T ss_pred cCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceE
Confidence 11122222 56666666542 35899999888765543322221 122222 34577777654 368
Q ss_pred EEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecCC-----eEEEEeCCCcc
Q psy2110 303 VLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSKG-----KVLVLSCPALE 353 (622)
Q Consensus 303 ~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 353 (622)
.+||+.+..- +..+....... . +...+++.++.|+.++ .+.+||+.+.+
T Consensus 223 ~~yd~~~~~W~~~~~~~~~r~~~-~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 223 EVYDPTTNAWRQVADMNMCRRNA-G-VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBSC-E-EEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEeCCCCCEeeCCCCCCccccC-e-EEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 8899876532 22222111111 1 2223667777777553 47788877654
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.72 E-value=0.036 Score=53.42 Aligned_cols=245 Identities=11% Similarity=0.109 Sum_probs=126.2
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--------CCCCeEEEEEeCC---CCeEEEEeeC-------
Q psy2110 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--------FPSPILKVQFHPR---NDHMFLVCPM------- 298 (622)
Q Consensus 237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~---~~~~~~~~~~------- 298 (622)
.....|+|.|+|++|+.+...|.|++++.. ++....+. .......++++|+ +..++++...
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 346789999999844455567999999853 33221111 2345689999996 5656665433
Q ss_pred CCcEEEEEecCC-------ceee-ccc---CCCCceEEEEEeeCCCEEEEEec-------------CCeEEEEeCCCcc-
Q psy2110 299 RHAAVLVDTDGD-------HQIV-PID---EDSDLSIVASFDRRGQHVVTGNS-------------KGKVLVLSCPALE- 353 (622)
Q Consensus 299 ~~~i~~~d~~~~-------~~~~-~~~---~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~- 353 (622)
...|..++.... +.+. .+. ........++|.|+|.++++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666666432 1111 111 11122356899999966555433 2467777764320
Q ss_pred -----------EEEEEe-cCCCCEEEEEEcC-CCCEEEEEeC-CCcEEEEecccccccC---------C-----------
Q psy2110 354 -----------LKASFK-ASTTAIKSIEFAR-RGNCLLVNTG-DRLIRVYNHQEVLNAG---------K----------- 399 (622)
Q Consensus 354 -----------~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~~-d~~i~i~d~~~~~~~~---------~----------- 399 (622)
....+. ++ .....++|+| +|+++++-.. ++.=.|.-+.....-+ .
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 111111 22 3467899999 5654444322 2222232222111100 0
Q ss_pred --CCCCCcceeeeccccceeeeeEEEcC-------CCCeEEEeeCCCCeEEEEECCCCeeEEE--EecCCCCceeEEEEC
Q psy2110 400 --DGDPEPIQKLQDLVNKTMWKKCCFSG-------DGEYVCAGSARQHALYIWEKSVGNLVKI--LHGTKGELLLDVVWH 468 (622)
Q Consensus 400 --~~~~~~~~~~~~~~~~~~~~~~~~sp-------dg~~l~~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~v~~v~~s 468 (622)
.+...++..+. .+.....++|.. +|+++++... .+.|...++..++.... +-......+.++++.
T Consensus 256 ~~~~~~~P~~~~~---~~~ap~G~~~y~g~~fp~~~g~l~v~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 256 IVAGTEQPVFYWK---DSPAVSGMAFYNSDKFPQWQQKLFIGALK-DKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp SCTTSCCCSEEES---SCCCEEEEEEECCSSSGGGTTEEEEEETT-TTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCccCCeEEeC---CCcCcceeEEECCccCcccCCcEEEEEcc-CCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 00001111111 122345567753 4666655544 77888888776654433 211112238999999
Q ss_pred CCCCEEEEEeCCcEEEeec
Q psy2110 469 PVRPIIASISSGVVSLWAQ 487 (622)
Q Consensus 469 p~~~~l~s~~dg~v~iw~~ 487 (622)
|+|.+.++..+..=+||.+
T Consensus 332 pdG~lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 332 PDGYLYVLTDESSGELLKV 350 (353)
T ss_dssp TTSCEEEEECSTTEEEEEE
T ss_pred CCCcEEEEEeCCCCEEEEE
Confidence 9998666544223345544
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.71 E-value=0.0051 Score=58.22 Aligned_cols=225 Identities=8% Similarity=0.004 Sum_probs=113.6
Q ss_pred CEEEEEeC--CCeEEEEEcCCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeCC----CcEEEEECCCCcEEEEEeCCC
Q psy2110 207 TLLAVGCN--DGRIVLWDFLTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTD----NNVCIWDVLTGECEQKYRFPS 278 (622)
Q Consensus 207 ~~l~~~~~--dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~ 278 (622)
.+++.|+. ...+.+||..+.+-... +.........+. -++..++.|+.+ ..+.+||..+.+....-..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35555654 35688999887654322 111111112222 256667777654 568999999887655443322
Q ss_pred Ce--EEEEEeCCCCeEEEEeeCC------CcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEec--------
Q psy2110 279 PI--LKVQFHPRNDHMFLVCPMR------HAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNS-------- 340 (622)
Q Consensus 279 ~v--~~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 340 (622)
+. .+++.. +..+++.|+.+ ..+.+||..+..- +..+....... ++ ...+++.++.|+.
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GM-VEANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EE-EEETTEEEEECCEESCTTTCE
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EE-EEECCEEEEECCCCCCCCccc
Confidence 21 122222 44577777654 4588888876532 22222211111 12 2236677777653
Q ss_pred -CCeEEEEeCCCccEEEEEecCCCC-EEEEEEcCCCCEEEEEeCC-----CcEEEEecccccccCCCCCCCcceeeeccc
Q psy2110 341 -KGKVLVLSCPALELKASFKASTTA-IKSIEFARRGNCLLVNTGD-----RLIRVYNHQEVLNAGKDGDPEPIQKLQDLV 413 (622)
Q Consensus 341 -dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 413 (622)
-..+.+||+.+.+-...-...... -.+++.. +++.++.|+.+ ..+.+||+... ....+..+...
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~-------~W~~~~~~p~~- 237 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN-------EWKMVSPMPWK- 237 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT-------EEEECCCCSCC-
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC-------cEEECCCCCCC-
Confidence 345889998876533321111111 1122222 56666666543 45888888731 11111111111
Q ss_pred cceeeeeEEEcCCCCeEEEeeCC----CCeEEEEECCCCe
Q psy2110 414 NKTMWKKCCFSGDGEYVCAGSAR----QHALYIWEKSVGN 449 (622)
Q Consensus 414 ~~~~~~~~~~spdg~~l~~~~~~----d~~i~iwd~~~~~ 449 (622)
......+.+ +++.++.|+.+ -..+.+||..+.+
T Consensus 238 -r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 238 -GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp -BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred -ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 111112222 66777777642 2468889988765
No 321
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.67 E-value=0.042 Score=52.24 Aligned_cols=230 Identities=10% Similarity=0.039 Sum_probs=118.4
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEE---eCCCeE
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVG---CNDGRI 218 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~---~~dg~i 218 (622)
+.|+|.|||.++++--..|.|++++...+......... .. ..........++++|+ +..|++. ..++.|
T Consensus 35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~--~v---~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP--GV---SPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT--TC---CCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred eEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC--ce---eecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 69999999997777655899999986555432111000 00 0011134688999995 4445443 234566
Q ss_pred EEEEcCCC----------ce-EEEec-cCCcCeeEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC-----
Q psy2110 219 VLWDFLTR----------GI-AKIIS-AHMHPVCSISWSRNGYKIISAST-------------DNNVCIWDVLTG----- 268 (622)
Q Consensus 219 ~iwd~~~~----------~~-~~~~~-~~~~~v~~~~~s~~~~~l~s~~~-------------d~~i~iwd~~~~----- 268 (622)
.-|.+..+ +. +..+. ...+.-..|.|.|||.+.++.+. .|.|.-.+....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 66666541 11 11222 12234567999999987776542 244544454321
Q ss_pred ----cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce------------------eecccCCCCceEEE
Q psy2110 269 ----ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ------------------IVPIDEDSDLSIVA 326 (622)
Q Consensus 269 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------------~~~~~~~~~~~~~~ 326 (622)
..+....+ .....++|+|++..++.-.+.++.-.+.-+..+.. +..+..+......+
T Consensus 190 Pf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~ 268 (347)
T 3das_A 190 PFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGI 268 (347)
T ss_dssp SSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEE
T ss_pred CCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcce
Confidence 11222212 23567899997663333223333222322222111 11111111233455
Q ss_pred EEeeCCCEEEEEecCCeEEEEeCCCccE----EEEEecCCCCEEEEEEcCCCCEEEEEe
Q psy2110 327 SFDRRGQHVVTGNSKGKVLVLSCPALEL----KASFKASTTAIKSIEFARRGNCLLVNT 381 (622)
Q Consensus 327 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~ 381 (622)
+|. +|..++..-..+.|....+..... ...+......+..++..|||.++++..
T Consensus 269 ~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 269 AYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred EEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 554 355555555555666666544321 222334456789999999997665543
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.62 E-value=0.0062 Score=57.46 Aligned_cols=221 Identities=12% Similarity=0.099 Sum_probs=111.5
Q ss_pred CCEEEEeeCC----CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-----CeEEEEEc
Q psy2110 153 GTLLAVGCND----GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-----GRIVLWDF 223 (622)
Q Consensus 153 ~~~l~s~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~iwd~ 223 (622)
+.+++.|+.+ ..+.+||..+.+-... . ..+... .....+.+ ++++++.|+.+ ..+.+||.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~-~~p~~r-------~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~ 84 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQV-A-ELPSRR-------CRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDP 84 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEE-C-CCSSCC-------BSCEEEEE--TTEEEEESCBCSSSBCCCEEEEET
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEc-c-cCCccc-------ccceEEEE--CCEEEEEeCcCCCccccceEEECC
Confidence 4456666643 3578888877643222 1 111100 01112222 56677777644 35888998
Q ss_pred CCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcEEEEEeCCCCe--EEEEEeCCCCeEEE
Q psy2110 224 LTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTDN-----NVCIWDVLTGECEQKYRFPSPI--LKVQFHPRNDHMFL 294 (622)
Q Consensus 224 ~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~ 294 (622)
.+.+.... +.........+.+ +++.++.|+.++ .+.+||+.+.+....-..+.+. .+++.. +..+++
T Consensus 85 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 160 (302)
T 2xn4_A 85 VKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYA 160 (302)
T ss_dssp TTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred CCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEE
Confidence 87654322 1111111122222 566777777553 5888999887765543322221 122222 345666
Q ss_pred EeeC-------CCcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCccEEEEEec
Q psy2110 295 VCPM-------RHAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALELKASFKA 360 (622)
Q Consensus 295 ~~~~-------~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~ 360 (622)
.++. -..+..||+.+..- +..+......... ..-++++++.|+.+ ..+.+||+.+.+-...-..
T Consensus 161 ~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 238 (302)
T 2xn4_A 161 VGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGV--GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM 238 (302)
T ss_dssp ECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEE--EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccE--EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC
Confidence 6654 23578888876532 2222222111222 22367777777654 3689999987654332111
Q ss_pred --CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecc
Q psy2110 361 --STTAIKSIEFARRGNCLLVNTGD-----RLIRVYNHQ 392 (622)
Q Consensus 361 --~~~~i~~~~~s~~~~~l~~~~~d-----~~i~i~d~~ 392 (622)
.......+. -+++.++.++.+ ..+.+||+.
T Consensus 239 ~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 239 NMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp SSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCC
Confidence 111111222 256666666644 347888876
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.55 E-value=0.0085 Score=56.72 Aligned_cols=233 Identities=12% Similarity=0.043 Sum_probs=117.3
Q ss_pred EEEcCCCCEEEEecCC---CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC--
Q psy2110 87 CCFSGDGEYVCAGSAR---QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN-- 161 (622)
Q Consensus 87 ~~~sp~~~~l~~~~~~---~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-- 161 (622)
.+..-++..++.|+.. -..+.+||..+++-...-....... . .+++. .++.+++.|+.
T Consensus 19 ~~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------------~----~~~~~-~~~~lyv~GG~~~ 81 (308)
T 1zgk_A 19 HAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRS------------G----LAGCV-VGGLLYAVGGRNN 81 (308)
T ss_dssp --CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCB------------S----CEEEE-ETTEEEEECCEEE
T ss_pred cccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccc------------c----ceEEE-ECCEEEEECCCcC
Confidence 3444567777777732 1468888987765433211011000 0 12222 25667777765
Q ss_pred --C-----CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCceE
Q psy2110 162 --D-----GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-----GRIVLWDFLTRGIA 229 (622)
Q Consensus 162 --d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~iwd~~~~~~~ 229 (622)
+ ..+.+||..+.+-...-...... .....+.+ ++++++.|+.+ ..+.+||..+.+..
T Consensus 82 ~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 82 SPDGNTDSSALDCYNPMTNQWSPCAPMSVPR---------NRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWH 150 (308)
T ss_dssp ETTEEEECCCEEEEETTTTEEEECCCCSSCC---------BTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEE
T ss_pred CCCCCeecceEEEECCCCCeEeECCCCCcCc---------cccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEe
Confidence 2 46888888776433221111100 11122223 56677776543 45888998776543
Q ss_pred EE--eccCCcCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEeCCCC--eEEEEEeCCCCeEEEEeeCC-
Q psy2110 230 KI--ISAHMHPVCSISWSRNGYKIISASTD-----NNVCIWDVLTGECEQKYRFPSP--ILKVQFHPRNDHMFLVCPMR- 299 (622)
Q Consensus 230 ~~--~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~- 299 (622)
.. +......-..+.+ +++.++.|+.+ ..+.+||+.+.+....-..+.+ -.+++.. +..+++.++.+
T Consensus 151 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 226 (308)
T 1zgk_A 151 LVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDG 226 (308)
T ss_dssp ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred ECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCC
Confidence 22 1111111122222 56666666654 4689999988765543322221 1122222 44577777654
Q ss_pred ----CcEEEEEecCCceee--cccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCcc
Q psy2110 300 ----HAAVLVDTDGDHQIV--PIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALE 353 (622)
Q Consensus 300 ----~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 353 (622)
..+.+||+.+..-.. .+....... .++ .-++++++.|+.+ ..+.+||+.+.+
T Consensus 227 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 227 QDQLNSVERYDVETETWTFVAPMKHRRSAL-GIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp SSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCccceEEEEeCCCCcEEECCCCCCCccce-EEE-EECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 468889987653222 222111111 222 2366777777643 357778877654
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.55 E-value=0.011 Score=56.53 Aligned_cols=223 Identities=10% Similarity=0.054 Sum_probs=124.9
Q ss_pred EEEEcCCCCEEEEee------------CCCcEEEEecCCcc-cccccccccCCCcccccccccceEEEEECC--CCC-EE
Q psy2110 146 TCAFNKRGTLLAVGC------------NDGRIVLWDFLTRG-IAKIISAHMHPEFDGALDCISLAVTCAFNK--RGT-LL 209 (622)
Q Consensus 146 ~~~~s~d~~~l~s~~------------~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~-~l 209 (622)
.++..|+|..+++++ .+|.|.++|..+.. ....+........... .....+.+.+ +|+ +|
T Consensus 54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~----f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISS----FNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGG----CCEEEEEEEECTTCCEEE
T ss_pred eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCc----eeeeeeEEEECCCCcEEE
Confidence 667778775554442 68999999987421 1222221110000011 1234555544 454 34
Q ss_pred EEE-eC--CCeEEEEEcCCCc-e---EEEeccC-CcCeeEEEEcCCCCEEEEEeC-----------------CCcEEEEE
Q psy2110 210 AVG-CN--DGRIVLWDFLTRG-I---AKIISAH-MHPVCSISWSRNGYKIISAST-----------------DNNVCIWD 264 (622)
Q Consensus 210 ~~~-~~--dg~i~iwd~~~~~-~---~~~~~~~-~~~v~~~~~s~~~~~l~s~~~-----------------d~~i~iwd 264 (622)
+++ .. +..|.+|++.... . +..+.+. -...+.+.+.++|++.++... .|.|..+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 443 33 5678888876532 2 2333322 245789999999987666531 23455555
Q ss_pred CCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce---eecccCCCCceEEEEEee-CCCEEEEEec
Q psy2110 265 VLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ---IVPIDEDSDLSIVASFDR-RGQHVVTGNS 340 (622)
Q Consensus 265 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 340 (622)
. ++.......-...+.++|+|+++.++++-+..+.|..|++..... ...+ ........+++++ +|.+.+++..
T Consensus 210 ~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 210 P--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp T--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred C--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 4 444333333456789999999999999888899999999864321 1222 2245566788999 5988776654
Q ss_pred C-CeEEEEeCC--CccEEEEEec---CCCCEEEEEEcCCCCE
Q psy2110 341 K-GKVLVLSCP--ALELKASFKA---STTAIKSIEFARRGNC 376 (622)
Q Consensus 341 d-g~i~i~d~~--~~~~~~~~~~---~~~~i~~~~~s~~~~~ 376 (622)
+ +.|..|+.. .+..+..++. ....+..+ |..+|+.
T Consensus 287 ~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~~ 327 (355)
T 3sre_A 287 NGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGTV 327 (355)
T ss_dssp CHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSSS
T ss_pred CceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCCE
Confidence 4 345555543 2444444442 22334443 4445553
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.48 E-value=0.025 Score=53.63 Aligned_cols=177 Identities=12% Similarity=0.062 Sum_probs=93.4
Q ss_pred EEEEEeCCCeEEEEEcCCCceEE-EeccCCcCeeEEEEcCCCCEEEEEeC-----C------CcEEEEECCCCcEEEEEe
Q psy2110 208 LLAVGCNDGRIVLWDFLTRGIAK-IISAHMHPVCSISWSRNGYKIISAST-----D------NNVCIWDVLTGECEQKYR 275 (622)
Q Consensus 208 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~-----d------~~i~iwd~~~~~~~~~~~ 275 (622)
+++.|+ ..+.+||..+++-.. .+..............++..++.|+. . ..+.+||..+.+....-.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344555 578999998877432 22212122333334457778888873 1 127889998877644333
Q ss_pred CCCCeE--EEEEeCCCCeEEEEeeCC--------CcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEec-C-
Q psy2110 276 FPSPIL--KVQFHPRNDHMFLVCPMR--------HAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNS-K- 341 (622)
Q Consensus 276 ~~~~v~--~~~~~~~~~~~~~~~~~~--------~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d- 341 (622)
.+.+-. +++.. +..+++.|+.+ ..+.+||..+..- +..+...... ..+...+++.++.|+. +
T Consensus 85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG--HTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS--CEEEEETTEEEEECCBCTT
T ss_pred CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc--eeEEEECCEEEEEeCCCCC
Confidence 322221 12222 44577776632 3578888876532 2222221111 1222356677777775 2
Q ss_pred ----CeEEEEeCCCccEEEEEe--cCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecc
Q psy2110 342 ----GKVLVLSCPALELKASFK--ASTTAIKSIEFARRGNCLLVNTGDR-----LIRVYNHQ 392 (622)
Q Consensus 342 ----g~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~-----~i~i~d~~ 392 (622)
..+.+||+.+.+-...-. ........+.+ +++.++.|+.++ .+.+||+.
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence 468999988765332211 11111122222 567777776543 47788876
No 326
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.44 E-value=0.19 Score=54.18 Aligned_cols=432 Identities=10% Similarity=0.036 Sum_probs=224.4
Q ss_pred CcceEEEEccCCcEEEeccCCCeEEEEeccccceecc-------------cCceEEeecCCceEEEeechhhhhcCCCCC
Q psy2110 2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKAS-------------RGNCLLVNTGDRLIRVYNHQEVLNAGKDGD 68 (622)
Q Consensus 2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~-------------~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 68 (622)
..|.++....+|.+.+ |+.+| +..+|..+.++... .+..|-+++.+ -+..++.....
T Consensus 63 ~~i~~i~~d~~g~lWi-gT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~------- 132 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYM-GTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRK------- 132 (758)
T ss_dssp SCEEEEEEETTTEEEE-EETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCC-------
T ss_pred ceEEEEEEcCCCcEEE-EeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCe-------
Confidence 3578888888875444 44555 67888765443211 11223333333 24445443210
Q ss_pred CccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEE
Q psy2110 69 PEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCA 148 (622)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~ 148 (622)
...............+.++....+|...+. +. +-|..++..+++... +...... ......|.++.
T Consensus 133 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~--~Gl~~~~~~~~~~~~-~~~~~~~-----------~~~~~~i~~i~ 197 (758)
T 3ott_A 133 LTSFDTRRNGLPNNTIYSIIRTKDNQIYVG-TY--NGLCRYIPSNGKFEG-IPLPVHS-----------SQSNLFVNSLL 197 (758)
T ss_dssp EEEECHHHHCCSCSCEEEEEECTTCCEEEE-ET--TEEEEEETTTTEEEE-ECCCCCT-----------TCSSCCEEEEE
T ss_pred EEEeccCCCCcCCCeEEEEEEcCCCCEEEE-eC--CCHhhCccCCCceEE-ecCCCcc-----------ccccceeEEEE
Confidence 000100011112334667777777776654 32 357788877665432 2111100 00011235777
Q ss_pred EcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Q psy2110 149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI 228 (622)
Q Consensus 149 ~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~ 228 (622)
..+++..|..|+. +-+..++..+++... +... ....|.++....+|.+.+ |+. +-+.+++..++..
T Consensus 198 ~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l----------~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~ 263 (758)
T 3ott_A 198 EDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAF----------HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPL 263 (758)
T ss_dssp EETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEE----------EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCC
T ss_pred EECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCC----------CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcE
Confidence 7777665555554 457788876654321 1100 012477888888887654 444 4578888766554
Q ss_pred EEEec-------cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--------CCCCeEEEEEeCCCCeEE
Q psy2110 229 AKIIS-------AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--------FPSPILKVQFHPRNDHMF 293 (622)
Q Consensus 229 ~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~ 293 (622)
..... -....|.++....+|. |..|+..| +.++... .. ...+. ....|.++.-..++. +
T Consensus 264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~--l 337 (758)
T 3ott_A 264 QHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGF--Y 337 (758)
T ss_dssp EEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCC--E
T ss_pred EEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCC--E
Confidence 32211 1224588888887776 44555556 5554332 21 11221 123577777777665 3
Q ss_pred EEeeCCCcEEEEEecCCc--eeeccc-------CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-c---
Q psy2110 294 LVCPMRHAAVLVDTDGDH--QIVPID-------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-A--- 360 (622)
Q Consensus 294 ~~~~~~~~i~~~d~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~--- 360 (622)
-.++.+ .+..++..+.. ....+. .....|.++.-+.+|++.+ |+. +-+..|+..+++...-.. .
T Consensus 338 WiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~ 414 (758)
T 3ott_A 338 WFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTG 414 (758)
T ss_dssp EEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC-
T ss_pred EEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcC
Confidence 333444 45556544321 111111 1224577777777776555 454 469999988775433211 1
Q ss_pred --CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcc---eeee--ccccceeeeeEEEcCCCCeEEEe
Q psy2110 361 --STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI---QKLQ--DLVNKTMWKKCCFSGDGEYVCAG 433 (622)
Q Consensus 361 --~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~spdg~~l~~~ 433 (622)
....|.++...++|+ |.+|+..+-|.+++....... ..... ..+. .......+.++...++|+.-+.+
T Consensus 415 ~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~ 489 (758)
T 3ott_A 415 TYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQS----TSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLL 489 (758)
T ss_dssp -CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHC----CSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred CCCCceEEEEEEcCCCC-EEEEECCCceEEEcccccccc----CCcceecccccccccccccceeeeEEEcCCCCEEEEc
Confidence 234588888877776 556776667888886521100 00001 0111 11122346677888888866533
Q ss_pred eCCCCeEEEEECCCCeeEEEEecC--CCCceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110 434 SARQHALYIWEKSVGNLVKILHGT--KGELLLDVVWHPVRPIIASISSGVVSLWAQN 488 (622)
Q Consensus 434 ~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~ 488 (622)
+..+| |..+|..+++........ ....+.++....+|.+.++...| +..++..
T Consensus 490 ~t~~G-l~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~G-l~~~~~~ 544 (758)
T 3ott_A 490 YNNKG-IDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGG-VMRINPK 544 (758)
T ss_dssp TTCSS-EEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEETTE-EEEECC-
T ss_pred cCCCC-cEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEecCc-eEEEecC
Confidence 33244 888998877654332111 11237788888888766544344 7777764
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.42 E-value=0.1 Score=50.39 Aligned_cols=264 Identities=8% Similarity=0.053 Sum_probs=162.7
Q ss_pred CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEE
Q psy2110 215 DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFL 294 (622)
Q Consensus 215 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 294 (622)
..+|.|.|+.++.......- .--+.-.+|..+.|+.-. ..++.|+|+++.+.++.+....+|.-=.|-.+.. +.+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~-l~l 121 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VAL 121 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTE-EEE
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCe-EEE
Confidence 34799999988654422111 112445678777666654 6799999999999999999888888777876553 333
Q ss_pred EeeCCCcEEEEEecCC-ceeecccCC----CCceEEEEEeeCCCEEEEEe-------cCCeEEEEeCCCccEEEEEecCC
Q psy2110 295 VCPMRHAAVLVDTDGD-HQIVPIDED----SDLSIVASFDRRGQHVVTGN-------SKGKVLVLSCPALELKASFKAST 362 (622)
Q Consensus 295 ~~~~~~~i~~~d~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~ 362 (622)
+ .+..++-|++... .+...+..| ...|.....+++.++++..+ -.|.+.+|..+. +.-+.+.+|.
T Consensus 122 V--T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha 198 (494)
T 1bpo_A 122 V--TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 198 (494)
T ss_dssp E--CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSE
T ss_pred E--cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeee
Confidence 3 3667999999643 333333322 45566777788888876533 236788998764 4455677775
Q ss_pred CCEEEEEEcCCC---CEEEEEeC---CCcEEEEecccccccCCCCCCCcceeeecc-ccceeeeeEEEcCCCCeEEEeeC
Q psy2110 363 TAIKSIEFARRG---NCLLVNTG---DRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVCAGSA 435 (622)
Q Consensus 363 ~~i~~~~~s~~~---~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~ 435 (622)
.....+.+.-+. ..++.+.. .+.++|.++.........-..+.+..+... .....-.++..|+.-..+..-+.
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK 278 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence 544444333221 24444444 378999988632100000000111111111 11122346788888888887776
Q ss_pred CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110 436 RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN 488 (622)
Q Consensus 436 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~ 488 (622)
-|.|++||+.+|.++..-+-..+. |..-+-+....-++... .|.|.--.++
T Consensus 279 -~G~i~lyDleTgt~i~~nrIs~~~-iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 279 -YGYIHLYDLETGTCIYMNRISGET-IFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp -TSEEEEEETTTCCEEEEEECCSSC-EEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred -CceEEEEecccceeeeeecccCCc-eEEecccCCCCcEEEEccCceEEEEEEc
Confidence 899999999999998877755544 66555555555555555 7877766665
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.38 E-value=0.014 Score=55.37 Aligned_cols=183 Identities=11% Similarity=0.072 Sum_probs=93.6
Q ss_pred EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-----C------CeEEEEEc
Q psy2110 155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-----D------GRIVLWDF 223 (622)
Q Consensus 155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----d------g~i~iwd~ 223 (622)
+++.|+ ..+.+||..+++-.. .....+.. .....+...++++++.|+. . ..+.+||.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~---------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~ 74 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVP---------KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDH 74 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSC---------SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEET
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCC---------ccceEEEEECCEEEEEcCcccCCCCCccccccceEEecC
Confidence 344555 578899988875432 11110000 1122233457788888773 1 12778888
Q ss_pred CCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCcEEEEEeCCCCe--EEEEEeCCCCe
Q psy2110 224 LTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTD--------NNVCIWDVLTGECEQKYRFPSPI--LKVQFHPRNDH 291 (622)
Q Consensus 224 ~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~ 291 (622)
.+.+-... +.........+.+ +++.++.|+.+ ..+.+||..+.+....-..+.+. .+++. - +..
T Consensus 75 ~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~ 150 (315)
T 4asc_A 75 LDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-H-MDL 150 (315)
T ss_dssp TTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTE
T ss_pred CCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-E-CCE
Confidence 77654321 1111111112222 56666666632 45899999887654433322221 12222 2 345
Q ss_pred EEEEeeC-C-----CcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecCC-----eEEEEeCCCccEE
Q psy2110 292 MFLVCPM-R-----HAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSKG-----KVLVLSCPALELK 355 (622)
Q Consensus 292 ~~~~~~~-~-----~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~ 355 (622)
+++.|+. + ..+.+||..+..- +..+........ +..-+++.++.|+.++ .+.+||+.+.+-.
T Consensus 151 iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFG--ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCE--EEEETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceE--EEEECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 7777765 2 3688888876532 222222111112 2233677777777654 5888998876533
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.35 E-value=0.015 Score=55.08 Aligned_cols=230 Identities=8% Similarity=0.024 Sum_probs=114.5
Q ss_pred ECCCCCEEEEEeC----CCeEEEEEcCCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeC----C-----CcEEEEECC
Q psy2110 202 FNKRGTLLAVGCN----DGRIVLWDFLTRGIAKI--ISAHMHPVCSISWSRNGYKIISAST----D-----NNVCIWDVL 266 (622)
Q Consensus 202 ~s~~g~~l~~~~~----dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~----d-----~~i~iwd~~ 266 (622)
..-++.+++.|+. -..+.+||..+.+.... +....... +++. .++..++.|+. + ..+.+||+.
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 3445667777763 24688899877654322 11111111 2222 25666666664 2 468999998
Q ss_pred CCcEEEEEeCCCC--eEEEEEeCCCCeEEEEeeCC-----CcEEEEEecCCcee--ecccCCCCceEEEEEeeCCCEEEE
Q psy2110 267 TGECEQKYRFPSP--ILKVQFHPRNDHMFLVCPMR-----HAAVLVDTDGDHQI--VPIDEDSDLSIVASFDRRGQHVVT 337 (622)
Q Consensus 267 ~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 337 (622)
+.+....-..+.+ -.+++.. +..+++.|+.+ ..+.+||..+..-. ..+.........+. -+++.++.
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~ 174 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLLYAV 174 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEE
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEEEEE
Confidence 8765543332211 1122222 34566666543 35778888765322 12222111122222 26777777
Q ss_pred EecC-----CeEEEEeCCCccEEEE--EecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecccccccCCCCCCCc
Q psy2110 338 GNSK-----GKVLVLSCPALELKAS--FKASTTAIKSIEFARRGNCLLVNTGD-----RLIRVYNHQEVLNAGKDGDPEP 405 (622)
Q Consensus 338 ~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~ 405 (622)
|+.+ ..+.+||+.+.+-... +.........+.+ +++.++.++.+ ..+.+||+... ....
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-------~W~~ 245 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE-------TWTF 245 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-------EEEE
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC-------cEEE
Confidence 7654 4588999877653322 1111111222222 56666776553 46888988731 1111
Q ss_pred ceeeeccccceeeeeEEEcCCCCeEEEeeCC----CCeEEEEECCCCee
Q psy2110 406 IQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR----QHALYIWEKSVGNL 450 (622)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----d~~i~iwd~~~~~~ 450 (622)
+..+. ......+++. -+++.++.|+.+ -..+.+||..+.+-
T Consensus 246 ~~~~p---~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 246 VAPMK---HRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp CCCCS---SCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCCCC---CCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 11111 1111112222 266777777642 23588888877653
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.30 E-value=0.17 Score=50.47 Aligned_cols=103 Identities=9% Similarity=0.155 Sum_probs=62.9
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---------CCCeEEEEEeCC---CCeEEEEeeC------
Q psy2110 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF---------PSPILKVQFHPR---NDHMFLVCPM------ 298 (622)
Q Consensus 237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~~~~~---~~~~~~~~~~------ 298 (622)
...+.|+|.|+|+.+++-...+.|++++..+++....... ......++|+|+ +..++++.+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 4567999999998666654434788888666654333221 245679999996 6666665542
Q ss_pred ------CCcEEEEEecCC-------ceeec-cc-CCCCceEEEEEeeCCCEEEEEe
Q psy2110 299 ------RHAAVLVDTDGD-------HQIVP-ID-EDSDLSIVASFDRRGQHVVTGN 339 (622)
Q Consensus 299 ------~~~i~~~d~~~~-------~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~ 339 (622)
...|.-++.... +.+.. +. ........++|.|+|.++++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555555321 11211 21 1234567899999998777644
No 331
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.29 E-value=0.03 Score=53.90 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=75.8
Q ss_pred ceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc------------EEEEEec------CCCCEEEEEEcCC---CCEEEEE
Q psy2110 322 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALE------------LKASFKA------STTAIKSIEFARR---GNCLLVN 380 (622)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~------~~~~i~~~~~s~~---~~~l~~~ 380 (622)
.+..+..+|+|.+|+..+.. .|.|..+..+. ..+.+.. ...+|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 46678999999999997655 68888887321 1233442 2577999999995 4689999
Q ss_pred eCCCcEEEEecccccccCCCCCCCcceeeeccc-------cceeeeeEEEcCCCCeEEEee--CCCCeEEEE
Q psy2110 381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-------NKTMWKKCCFSGDGEYVCAGS--ARQHALYIW 443 (622)
Q Consensus 381 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~~~~--~~d~~i~iw 443 (622)
..|+.|++||+.... ..+. .+.... ....+.++||+++|-.|...+ . +|.||-.
T Consensus 146 tsD~~Ir~yDl~~s~-------~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~-~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQ-------EKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTE-GGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTT-------SCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTT-SCEEEEE
T ss_pred ecCCEEEEEEcccCC-------CCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCC-CCCEEEE
Confidence 999999999998511 1111 121111 114567889999887776644 4 6777643
No 332
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.24 E-value=0.15 Score=48.48 Aligned_cols=237 Identities=13% Similarity=0.092 Sum_probs=123.2
Q ss_pred CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------CCCCeEEEEEeCC---CCeEEEEee--CCCcE
Q psy2110 235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-------FPSPILKVQFHPR---NDHMFLVCP--MRHAA 302 (622)
Q Consensus 235 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~---~~~~~~~~~--~~~~i 302 (622)
.-...+.|+|.|||..+++-...|.|++++..+++...... .......++++|+ +..++++-+ .++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 34566899999999876666558999999876665432221 2456789999996 444544322 34455
Q ss_pred EEEEecCC----------ceee-ccc-CCCCceEEEEEeeCCCEEEEEec-------------CCeEEEEeCCCc-----
Q psy2110 303 VLVDTDGD----------HQIV-PID-EDSDLSIVASFDRRGQHVVTGNS-------------KGKVLVLSCPAL----- 352 (622)
Q Consensus 303 ~~~d~~~~----------~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~----- 352 (622)
.-+..... +.+. .+. ........+.|.|+|.++++.+. .|.|.-++....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 55655431 1111 111 11223456899999987777432 355655565422
Q ss_pred ---c-EEEEEecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccccC------C---CCCCCcceeeeccccceee
Q psy2110 353 ---E-LKASFKASTTAIKSIEFARRGNCLLVN-TGDRLIRVYNHQEVLNAG------K---DGDPEPIQKLQDLVNKTMW 418 (622)
Q Consensus 353 ---~-~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~ 418 (622)
. .+. -.+|. ....++|+|+|.++++- +.++.=.|.-+.....-+ . .+...++..+.. .....
T Consensus 190 Pf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~--~~~ap 265 (347)
T 3das_A 190 PFPGSPVY-SYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST--DEASP 265 (347)
T ss_dssp SSTTCCEE-EBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT--TTCCE
T ss_pred CCCCCeEE-eeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC--CCCCC
Confidence 1 111 12343 34589999988765554 223322333222211110 0 000111211111 11123
Q ss_pred eeEEEcCCCCeEEEeeCCCCeEEEEECCCCe----eEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110 419 KKCCFSGDGEYVCAGSARQHALYIWEKSVGN----LVKILHGTKGELLLDVVWHPVRPIIASIS 478 (622)
Q Consensus 419 ~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~s~~ 478 (622)
..++|. +|..++..-. .+.|....+..+. ....+.+..+. +.+|+..|||.++++..
T Consensus 266 ~G~~~~-~g~~~~~~l~-~~~l~~v~~~~~~~~~~~e~~l~~~~gR-~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYA-EGSVWMAGLR-GERLWRIPLKGTAAAADPQAFLEGEYGR-LRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEE-TTEEEEEEST-TCSEEEEEEETTEESSCCEEESTTTSSC-EEEEEEEETTEEEEEEC
T ss_pred cceEEE-cCceeecccc-CCEEEEEEecCCceecceEEeecCCCCC-ccEEEECCCCcEEEEEc
Confidence 455665 3444444333 4556555554432 22334443444 88888888887666654
No 333
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.23 E-value=0.33 Score=52.39 Aligned_cols=355 Identities=7% Similarity=0.014 Sum_probs=186.6
Q ss_pred ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC
Q psy2110 83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND 162 (622)
Q Consensus 83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 162 (622)
.+.++....+|. |-.++. .-+..||..+.+......... ..|.++.. .++ .|..++.+
T Consensus 64 ~i~~i~~d~~g~-lWigT~--~Gl~~yd~~~~~f~~~~~~~~-----------------~~i~~i~~-~~g-~lWigt~~ 121 (758)
T 3ott_A 64 RIYCGVIIDNTY-LYMGTD--NGILVYNYRADRYEQPETDFP-----------------TDVRTMAL-QGD-TLWLGALN 121 (758)
T ss_dssp CEEEEEEETTTE-EEEEET--TEEEEEETTTTEECCCSCCCC-----------------SCEEEEEE-ETT-EEEEEETT
T ss_pred eEEEEEEcCCCc-EEEEeC--CCeEEEeCCCCEEECcccCCC-----------------ceEEEEEe-cCC-cEEEEcCC
Confidence 456666666664 444553 357899987754321000001 11245543 345 45555555
Q ss_pred CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe-cc----CCc
Q psy2110 163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII-SA----HMH 237 (622)
Q Consensus 163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~-~~----~~~ 237 (622)
-|..++..+++... +...... .....|.++....+|.+.+ |+.. -+..++..+++..... .. ...
T Consensus 122 -Gl~~~~~~~~~~~~-~~~~~~~------l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 122 -GLYTYQLQSRKLTS-FDTRRNG------LPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp -EEEEEETTTCCEEE-ECHHHHC------CSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred -cceeEeCCCCeEEE-eccCCCC------cCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 57888876654322 2100000 0013477888888887665 4444 5778887666543211 11 123
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110 238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316 (622)
Q Consensus 238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 316 (622)
.|.++...+++..|..|.. +-+..+|..+++...... ....|.++....++. +..++. +.+.+++..+.......
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigT~-~Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD--LLAGTD-NGLYVYHNDTTPLQHII 267 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC--EEEEET-TEEEEECCTTSCCEEEC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC--EEEEeC-CceeEEecCCCcEEEEE
Confidence 4788888777765555553 458889988765433221 233477777776665 333443 45777777654321111
Q ss_pred -------cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-----cCCCCEEEEEEcCCCCEEEEEeCCC
Q psy2110 317 -------DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----ASTTAIKSIEFARRGNCLLVNTGDR 384 (622)
Q Consensus 317 -------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~d~ 384 (622)
......|.++..+.+|.+.+ |+..| +.++.....-...... .....|.++.-..+|.+. +|+.+|
T Consensus 268 ~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G 344 (758)
T 3ott_A 268 HDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGANG 344 (758)
T ss_dssp CCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETTE
T ss_pred cCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCCc
Confidence 11234577888777776544 55566 5544332211111111 123568889888888744 455554
Q ss_pred cEEEEecccccccCCCCCCCcceeee-----ccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe-cC-
Q psy2110 385 LIRVYNHQEVLNAGKDGDPEPIQKLQ-----DLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH-GT- 457 (622)
Q Consensus 385 ~i~i~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~-~~- 457 (622)
+..++.... ....+..+. .......+.++.-..+|++-+ |+. + -|..|+..+++...... ..
T Consensus 345 -l~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~-GL~~~~~~~~~~~~~~~~~~~ 413 (758)
T 3ott_A 345 -LIRFTDPAG-------ERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-G-SINRYDYATRQFIHYNIVDNT 413 (758)
T ss_dssp -EEEESCTTS-------SCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-T-EEEEEETTTTEEEEEEEECCC
T ss_pred -ceeeccccc-------ccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-C-cHhhcCcCCCcEEEeecCCCc
Confidence 555654420 001111111 011223456677777777544 443 4 59999998876543221 11
Q ss_pred ---CCCceeEEEECCCCCEEEEEeCCcEEEeec
Q psy2110 458 ---KGELLLDVVWHPVRPIIASISSGVVSLWAQ 487 (622)
Q Consensus 458 ---~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~ 487 (622)
....|.++.-.+++.+.+....+-+.+++.
T Consensus 414 ~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~ 446 (758)
T 3ott_A 414 GTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDK 446 (758)
T ss_dssp --CBSSSEEEEEECTTSEEEEEESSSCEEEEEH
T ss_pred CCCCCceEEEEEEcCCCCEEEEECCCceEEEcc
Confidence 112378888877776555443445666654
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.21 E-value=0.22 Score=49.74 Aligned_cols=109 Identities=6% Similarity=0.026 Sum_probs=59.9
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEEeC-------
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCN------- 214 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~------- 214 (622)
+.|+|.|+|+++++-...+.|++++..++.......... ... ..........++|+|+ +..|+++..
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~--~~~-~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPE--IVN-DADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTT--CCC-CTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCc--ccc-ccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 699999999877765443468888765543321111100 000 0001134678999996 555555442
Q ss_pred ------CCeEEEEEcCCC--c-----eE-EEec-cCCcCeeEEEEcCCCCEEEEEeC
Q psy2110 215 ------DGRIVLWDFLTR--G-----IA-KIIS-AHMHPVCSISWSRNGYKIISAST 256 (622)
Q Consensus 215 ------dg~i~iwd~~~~--~-----~~-~~~~-~~~~~v~~~~~s~~~~~l~s~~~ 256 (622)
...|.-|++... . .+ ..+. ...+....|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234666665432 1 11 1122 12245789999999987776553
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.20 E-value=0.087 Score=49.90 Aligned_cols=224 Identities=10% Similarity=0.102 Sum_probs=108.3
Q ss_pred CEEEEecCCCCeEEEEEcCCCceEEE-EeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC----CC-----
Q psy2110 94 EYVCAGSARQHALYIWEKSVGNLVKI-LHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN----DG----- 163 (622)
Q Consensus 94 ~~l~~~~~~~~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~----dg----- 163 (622)
..++.|+ ..+.+||..+++-... +....... .......++.+++.|+. ++
T Consensus 17 ~i~~~GG---~~~~~yd~~~~~W~~~~~~~~~~r~-----------------~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 76 (318)
T 2woz_A 17 LILLVND---TAAVAYDPMENECYLTALAEQIPRN-----------------HSSIVTQQNQVYVVGGLYVDEENKDQPL 76 (318)
T ss_dssp EEEEECS---SEEEEEETTTTEEEEEEECTTSCSS-----------------EEEEECSSSCEEEEESSCC-------CC
T ss_pred hhhhccc---cceEEECCCCCceecccCCccCCcc-----------------ceEEEEECCEEEEECCcccCccccCCCc
Confidence 3445555 3588999988775431 11111111 12233456777788773 11
Q ss_pred --cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-------CeEEEEEcCCCceEEE--e
Q psy2110 164 --RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-------GRIVLWDFLTRGIAKI--I 232 (622)
Q Consensus 164 --~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-------g~i~iwd~~~~~~~~~--~ 232 (622)
.+.+||..+++-...-...... .....+.+ ++++++.|+.+ ..+.+||..+.+-... +
T Consensus 77 ~~~~~~~d~~~~~W~~~~~~p~~r---------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 145 (318)
T 2woz_A 77 QSYFFQLDNVSSEWVGLPPLPSAR---------CLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL 145 (318)
T ss_dssp CBEEEEEETTTTEEEECSCBSSCB---------CSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC
T ss_pred cccEEEEeCCCCcEEECCCCCccc---------cccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC
Confidence 1667787765433221111100 01122222 56677777653 3477888877654332 1
Q ss_pred ccCCcCeeEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCCCe--EEEEEeCCCCeEEEEeeCC-----
Q psy2110 233 SAHMHPVCSISWSRNGYKIISAST------DNNVCIWDVLTGECEQKYRFPSPI--LKVQFHPRNDHMFLVCPMR----- 299 (622)
Q Consensus 233 ~~~~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~----- 299 (622)
......- +++. .+++.++.|+. -..+.+||+.+.+....-..+.+. .+++.. +..+++.|+.+
T Consensus 146 p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 221 (318)
T 2woz_A 146 PIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLS 221 (318)
T ss_dssp SSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEE
T ss_pred CCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCcc
Confidence 1111111 1222 36666666653 235999999988765543322211 122222 33566666543
Q ss_pred CcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecC--------------CeEEEEeCCCccE
Q psy2110 300 HAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSK--------------GKVLVLSCPALEL 354 (622)
Q Consensus 300 ~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~ 354 (622)
..+.+||+.+..- +..+....... .+...+++.++.|+.+ ..+.+||+.+.+-
T Consensus 222 ~~~~~yd~~~~~W~~~~~~p~~r~~~--~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 290 (318)
T 2woz_A 222 ASVEAFDLKTNKWEVMTEFPQERSSI--SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290 (318)
T ss_dssp EEEEEEETTTCCEEECCCCSSCCBSC--EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred ceEEEEECCCCeEEECCCCCCcccce--EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence 2466788766532 22222111111 1223456677776643 3466777766543
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.09 E-value=0.045 Score=51.89 Aligned_cols=182 Identities=10% Similarity=0.119 Sum_probs=92.2
Q ss_pred EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC----CC-------eEEEEEc
Q psy2110 155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN----DG-------RIVLWDF 223 (622)
Q Consensus 155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----dg-------~i~iwd~ 223 (622)
+++.|+. .+..||..+++-.. ........ .....+...++.+++.|+. ++ .+.+||.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~---------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~ 85 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL-TALAEQIP---------RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDN 85 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE-EEECTTSC---------SSEEEEECSSSCEEEEESSCC-------CCCBEEEEEET
T ss_pred hhhcccc--ceEEECCCCCceec-ccCCccCC---------ccceEEEEECCEEEEECCcccCccccCCCccccEEEEeC
Confidence 4455553 47888988765433 11110000 0112233456788888873 11 1677887
Q ss_pred CCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeCC-------CcEEEEECCCCcEEEEEeCCCCeE--EEEEeCCCCeE
Q psy2110 224 LTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTD-------NNVCIWDVLTGECEQKYRFPSPIL--KVQFHPRNDHM 292 (622)
Q Consensus 224 ~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~~ 292 (622)
.+.+.... +...........+ +++.++.|+.+ ..+.+||..+.+....-..+.+.. +++. . +..+
T Consensus 86 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~-~~~i 161 (318)
T 2woz_A 86 VSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-H-NGMI 161 (318)
T ss_dssp TTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-E-TTEE
T ss_pred CCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-E-CCEE
Confidence 77654322 1111111122222 56677777653 258889998877655433332221 1222 2 3456
Q ss_pred EEEeeC------CCcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCccE
Q psy2110 293 FLVCPM------RHAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALEL 354 (622)
Q Consensus 293 ~~~~~~------~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~ 354 (622)
++.|+. -..+.+||+.+..- +..+....... ++ ..-+++.++.|+.+ ..+.+||+.+.+-
T Consensus 162 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 162 YCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMF-GV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp EEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EE-EEETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred EEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccc-eE-EEECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 666653 23588889876532 22222211111 22 22366777777643 3577899887653
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.06 E-value=0.043 Score=53.06 Aligned_cols=236 Identities=11% Similarity=0.050 Sum_probs=113.9
Q ss_pred CCCEEEEecCCCCeEEEEEcCC--CceEEEEec-c-CcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC-C----
Q psy2110 92 DGEYVCAGSARQHALYIWEKSV--GNLVKILHG-T-KGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN-D---- 162 (622)
Q Consensus 92 ~~~~l~~~~~~~~~i~vwd~~~--~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-d---- 162 (622)
+++.++.|+.+...+.++|..+ .+-. .+.. . .... . .+++. -++++++.|+. +
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~------------~----~~~~~-~~~~lyv~GG~~~~~~~ 80 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRD------------Q----ATSAF-IDGNLYVFGGIGKNSEG 80 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCB------------S----CEEEE-ETTEEEEECCEEECTTS
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCc------------c----ceEEE-ECCEEEEEcCCCCCCCc
Confidence 7777788876667888999864 2221 1111 1 0000 0 12222 25677777765 2
Q ss_pred -----CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC----------------------
Q psy2110 163 -----GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND---------------------- 215 (622)
Q Consensus 163 -----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---------------------- 215 (622)
..+.+||..+.+-...-... +... ....++. .++++++.|+.+
T Consensus 81 ~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r-------~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 150 (357)
T 2uvk_A 81 LTQVFNDVHKYNPKTNSWVKLMSHA-PMGM-------AGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAID 150 (357)
T ss_dssp CEEECCCEEEEETTTTEEEECSCCC-SSCC-------SSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cceeeccEEEEeCCCCcEEECCCCC-Cccc-------ccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchh
Confidence 46888888776433221111 0000 1112222 467777888754
Q ss_pred -----------------CeEEEEEcCCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeC------CCcEEEEEC--CCC
Q psy2110 216 -----------------GRIVLWDFLTRGIAKI--ISAHMHPVCSISWSRNGYKIISAST------DNNVCIWDV--LTG 268 (622)
Q Consensus 216 -----------------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~--~~~ 268 (622)
..+.+||..+.+-... +......-.+++.. +++.++.|+. ...+.+||+ .+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~ 229 (357)
T 2uvk_A 151 KINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL 229 (357)
T ss_dssp HHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred hhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence 5788999887654332 22111110223322 5566666653 245777887 444
Q ss_pred cEEEEEeC--CCCe-EEEEEeCCCCeEEEEeeCC----------------------CcEEEEEecCCc--eeecccCCCC
Q psy2110 269 ECEQKYRF--PSPI-LKVQFHPRNDHMFLVCPMR----------------------HAAVLVDTDGDH--QIVPIDEDSD 321 (622)
Q Consensus 269 ~~~~~~~~--~~~v-~~~~~~~~~~~~~~~~~~~----------------------~~i~~~d~~~~~--~~~~~~~~~~ 321 (622)
+....-.. +... ...+... +..+++.++.+ ..+.+||+.+.. .+..+.....
T Consensus 230 ~W~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 308 (357)
T 2uvk_A 230 KWNKLAPVSSPDGVAGGFAGIS-NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA 308 (357)
T ss_dssp EEEECCCSSTTTCCBSCEEEEE-TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB
T ss_pred cEEecCCCCCCcccccceEEEE-CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc
Confidence 44332222 1111 1112222 33467776532 246788887542 3333332222
Q ss_pred ceEEEEEeeCCCEEEEEecCC------eEEEEeCCCccEEEEEe
Q psy2110 322 LSIVASFDRRGQHVVTGNSKG------KVLVLSCPALELKASFK 359 (622)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~ 359 (622)
.. .+...+++.++.|+.++ .+.++++++++.+....
T Consensus 309 ~~--~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 309 YG--VSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp SS--EEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred cc--eeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 22 22345677888887543 46666887777655433
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.98 E-value=0.11 Score=58.14 Aligned_cols=254 Identities=7% Similarity=0.038 Sum_probs=146.6
Q ss_pred CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCccccccccccc
Q psy2110 104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM 183 (622)
Q Consensus 104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 183 (622)
..|.|.|+.++..+.+..-... +.-.+|..+.||.-. ..++.|+|+++...++.+....
T Consensus 48 ~~vvIidl~~~~~~~rrpi~Ad--------------------sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e 106 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPISAD--------------------SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD 106 (1630)
T ss_pred ceEEEEECCCCCCcccccccch--------------------hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC
Confidence 5789999987654422211111 334678888777665 5789999999876665554432
Q ss_pred CCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceEEEeccC----CcCeeEEEEcCCCCEEEEEe---
Q psy2110 184 HPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAKIISAH----MHPVCSISWSRNGYKIISAS--- 255 (622)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~--- 255 (622)
.|.-=.|-.... |+..+ +..|+.|++.. ..+.+.+..| ...|..-..+++.++++..+
T Consensus 107 ------------~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~ 172 (1630)
T 1xi4_A 107 ------------DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 172 (1630)
T ss_pred ------------CceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeecc
Confidence 244445554443 43333 46899999964 2344444444 35677778888999877544
Q ss_pred ----CCCcEEEEECCCCcEEEEEeCCCCeEEEEEe--CCCCeEEEEee---CCCcEEEEEecCC---cee-----ec--c
Q psy2110 256 ----TDNNVCIWDVLTGECEQKYRFPSPILKVQFH--PRNDHMFLVCP---MRHAAVLVDTDGD---HQI-----VP--I 316 (622)
Q Consensus 256 ----~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~---~~~~i~~~d~~~~---~~~-----~~--~ 316 (622)
-.|.+.+|..+.+.....-.|......+... +....+++.+. ..+.+.+.++... .+. .. +
T Consensus 173 ~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~ 252 (1630)
T 1xi4_A 173 QQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF 252 (1630)
T ss_pred CCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccC
Confidence 2477888887654321111121111111111 11122222221 2357777777432 110 00 1
Q ss_pred --cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 317 --DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 317 --~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
....+...++..++.-..++.-+.-|.+++||+.++.++..-+-....|...+.+....-++.....|.|.-..++
T Consensus 253 ~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 253 PPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred CcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 1123445567778877888888999999999999999887766666666555554443334444566666555554
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.84 E-value=0.11 Score=50.10 Aligned_cols=226 Identities=11% Similarity=0.060 Sum_probs=108.0
Q ss_pred CCCEEEEeeCC-CcEEEEecCC--cccccccccccC-CCcccccccccceEEEEECCCCCEEEEEeC-C---------Ce
Q psy2110 152 RGTLLAVGCND-GRIVLWDFLT--RGIAKIISAHMH-PEFDGALDCISLAVTCAFNKRGTLLAVGCN-D---------GR 217 (622)
Q Consensus 152 d~~~l~s~~~d-g~i~vw~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-d---------g~ 217 (622)
++++++.|+.+ ..+.+||..+ .+-. .+.. .+ ... .....+.+ ++++++.|+. + ..
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~-~p~~~R-------~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 87 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAA-FPGGPR-------DQATSAFI--DGNLYVFGGIGKNSEGLTQVFND 87 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEE-ECCC-CTTCCC-------BSCEEEEE--TTEEEEECCEEECTTSCEEECCC
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCee-ECCC-CCCCcC-------ccceEEEE--CCEEEEEcCCCCCCCccceeecc
Confidence 56666776643 4688888764 2211 1111 11 000 11122223 4666777665 1 45
Q ss_pred EEEEEcCCCceEEEeccC-CcCeeEEEEcCCCCEEEEEeCC---------------------------------------
Q psy2110 218 IVLWDFLTRGIAKIISAH-MHPVCSISWSRNGYKIISASTD--------------------------------------- 257 (622)
Q Consensus 218 i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d--------------------------------------- 257 (622)
+.+||..+.+-...-... .......+...+++.++.|+.+
T Consensus 88 v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (357)
T 2uvk_A 88 VHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFN 167 (357)
T ss_dssp EEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCC
T ss_pred EEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCc
Confidence 888998876543221111 1111111222467777778754
Q ss_pred CcEEEEECCCCcEEEEEeCCC--Ce-EEEEEeCCCCeEEEEeeC------CCcEEEEEe--cCCc--eeecccCCCCceE
Q psy2110 258 NNVCIWDVLTGECEQKYRFPS--PI-LKVQFHPRNDHMFLVCPM------RHAAVLVDT--DGDH--QIVPIDEDSDLSI 324 (622)
Q Consensus 258 ~~i~iwd~~~~~~~~~~~~~~--~v-~~~~~~~~~~~~~~~~~~------~~~i~~~d~--~~~~--~~~~~~~~~~~~~ 324 (622)
..+.+||+.+.+....-..+. .. .+++.. +..+++.++. ...+..||+ .+.. .+..+........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 479999998887655544332 22 233333 3456666653 345677776 3322 2222211111112
Q ss_pred EEEEeeCCCEEEEEecC----------------------CeEEEEeCCCcc--EEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy2110 325 VASFDRRGQHVVTGNSK----------------------GKVLVLSCPALE--LKASFKASTTAIKSIEFARRGNCLLVN 380 (622)
Q Consensus 325 ~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~ 380 (622)
..+...++++++.|+.+ ..+.+||+.+.+ .+..+........+ ..-+++.++.|
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~G 323 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIG 323 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEe
Confidence 22334467777777632 247789987654 33333222222122 23366777777
Q ss_pred eCCC------cEEEEecc
Q psy2110 381 TGDR------LIRVYNHQ 392 (622)
Q Consensus 381 ~~d~------~i~i~d~~ 392 (622)
+.++ .|.+++++
T Consensus 324 G~~~~~~~~~~v~~l~~~ 341 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVK 341 (357)
T ss_dssp EECGGGCEEEEEEEEEC-
T ss_pred eeCCCCCEeeeEEEEEEc
Confidence 7542 24445555
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.82 E-value=0.11 Score=58.07 Aligned_cols=264 Identities=8% Similarity=0.049 Sum_probs=148.9
Q ss_pred CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEE
Q psy2110 215 DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFL 294 (622)
Q Consensus 215 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 294 (622)
..+|.|.|+.++..+.... -.--+.-.+|..+.|+.-. ..++.|+|+.+.+.++.+.++.+|.-=.|-.... +.+
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~-l~l 121 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VAL 121 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCe-eEE
Confidence 3478899988765432111 1112334567666555543 6799999999999999998888888778876554 333
Q ss_pred EeeCCCcEEEEEecCC-ceeecccCC----CCceEEEEEeeCCCEEEEEe-------cCCeEEEEeCCCccEEEEEecCC
Q psy2110 295 VCPMRHAAVLVDTDGD-HQIVPIDED----SDLSIVASFDRRGQHVVTGN-------SKGKVLVLSCPALELKASFKAST 362 (622)
Q Consensus 295 ~~~~~~~i~~~d~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~ 362 (622)
+ .+..|+-|++.+. .+...+..| ...|.....+++.++++..+ -.|.+.+|.... +.-+.+.+|.
T Consensus 122 V--T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha 198 (1630)
T 1xi4_A 122 V--TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 198 (1630)
T ss_pred E--cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhH
Confidence 3 3567999999643 333333333 45566677788888876533 347888888764 3344455665
Q ss_pred CCEEEEEEc--C-CCCEEEEEeC---CCcEEEEecccccccCCCCCCCcceeeeccc-cceeeeeEEEcCCCCeEEEeeC
Q psy2110 363 TAIKSIEFA--R-RGNCLLVNTG---DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSA 435 (622)
Q Consensus 363 ~~i~~~~~s--~-~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~ 435 (622)
.....+... + ....++.+.. .+.++|.++.........-..+.+..+..+. ......++..|+.-..+...+.
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk 278 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec
Confidence 544444332 1 1223333322 3689998886421110000001111111110 1112245677887777777775
Q ss_pred CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110 436 RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN 488 (622)
Q Consensus 436 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~ 488 (622)
-|.|++||+.+|.++..-+-.... |...+-+....-++... .|.|.--.++
T Consensus 279 -~G~~~~~d~~t~~~i~~~ris~~~-iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 279 -YGYIHLYDLETGTCIYMNRISGET-IFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred -CceEEEEecccchhhhhccccCCc-eEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 789999999999887654433322 44333333322333333 5655544443
No 341
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.71 E-value=0.18 Score=48.72 Aligned_cols=153 Identities=12% Similarity=0.165 Sum_probs=88.9
Q ss_pred EcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEE
Q psy2110 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW 168 (622)
Q Consensus 89 ~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw 168 (622)
.+.+|..|+++- ++.||.-++..+...+.++....-. ...|..+..+|+|++||..+. ..|.|-
T Consensus 28 ~~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~-------------f~~i~qlvlSpsG~lLAl~g~-~~V~Vv 91 (452)
T 3pbp_A 28 SSQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLV-------------LDDTFHVISSTSGDLLCLFND-NEIFVM 91 (452)
T ss_dssp EETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCC-------------CCTTCEEEECTTSSEEEEECS-SEEEEE
T ss_pred EEcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccc-------------cCceeEEEECCCCCEEEEecC-CeEEEE
Confidence 344566666554 2677777776444444444331000 001258999999999999865 589998
Q ss_pred ecCCcccccc-------cc---cccCCCcccccccccceEEEEECCC---CCEEEEEeCCCeEEEEEcCCCc--eEEEec
Q psy2110 169 DFLTRGIAKI-------IS---AHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCNDGRIVLWDFLTRG--IAKIIS 233 (622)
Q Consensus 169 ~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~dg~i~iwd~~~~~--~~~~~~ 233 (622)
.+..+..... ++ .+..+ ........|..+.|+|- +..|++-..|+.|++||+.... +. .+.
T Consensus 92 ~LP~~~~~~~~~~~~~~~q~~ty~l~~---~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~ 167 (452)
T 3pbp_A 92 EVPWGYSNVEDVSIQDAFQIFHYSIDE---EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLN 167 (452)
T ss_dssp ECCTTCSCCCCHHHHHTTEEEEEEGGG---CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EES
T ss_pred EecCccccCcccccccccceeEEEcCC---cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chh
Confidence 8874321111 00 00000 00112356999999995 4578888999999999997521 22 232
Q ss_pred ---------cCCcCeeEEEEcCCCCEEEEEe--CCCcEE
Q psy2110 234 ---------AHMHPVCSISWSRNGYKIISAS--TDNNVC 261 (622)
Q Consensus 234 ---------~~~~~v~~~~~s~~~~~l~s~~--~d~~i~ 261 (622)
.....|.+++|..++-.|+..+ ..|.|+
T Consensus 168 k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 168 KPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp CCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred ccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 2225677888887665555433 445444
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.018 Score=54.52 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=71.2
Q ss_pred CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEE---EECCCCCEEEEE-eCCCeEEEEEcCCCceE
Q psy2110 154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTC---AFNKRGTLLAVG-CNDGRIVLWDFLTRGIA 229 (622)
Q Consensus 154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~s~~g~~l~~~-~~dg~i~iwd~~~~~~~ 229 (622)
.+++.++.||.|.-.|..+|+.+-.+...... .+... +...++..++.. +.||.|..++..+|...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~----------p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQ----------PLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSC----------CSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccC----------CcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence 47888999999999999999877776554100 00110 001123333333 57999999998887554
Q ss_pred EEecc----CCcCeeE---EEE-----cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q psy2110 230 KIISA----HMHPVCS---ISW-----SRNGYKIISASTDNNVCIWDVLTGECEQKYRFP 277 (622)
Q Consensus 230 ~~~~~----~~~~v~~---~~~-----s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 277 (622)
..+.. ...++.. ... +..+..+++++.+|.+...|+.+|+.+..+...
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 43321 1112221 000 013457889999999999999999999998854
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.35 E-value=0.86 Score=45.55 Aligned_cols=254 Identities=13% Similarity=0.130 Sum_probs=141.0
Q ss_pred EEEEEeCCCeEEEEEcCCCceEEEeccC-------------------------CcCee--EEEEcC---CCCEEEEEeC-
Q psy2110 208 LLAVGCNDGRIVLWDFLTRGIAKIISAH-------------------------MHPVC--SISWSR---NGYKIISAST- 256 (622)
Q Consensus 208 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~v~--~~~~s~---~~~~l~s~~~- 256 (622)
.+.+|+..|.|+|+-+.+++.+..+.-. .+... .+++.. ||++|+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 3667888999999999888877665210 01111 233332 6778888765
Q ss_pred CCcEEEEECCCCcEEEEEe--CCCCeEEEEEe--CCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCC
Q psy2110 257 DNNVCIWDVLTGECEQKYR--FPSPILKVQFH--PRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG 332 (622)
Q Consensus 257 d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~--~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (622)
...|-..+++..++-+.+. ....+..+.+- |+..++++.+-. . += +.+......+.. ..
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~-~-~P---~pndg~~~~~~~------------~~ 214 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEF-I-IP---HPNDGKVFDLQD------------EN 214 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECS-C-EE---SSCSSSCCCTTS------------TT
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEeccee-e-cc---CCCCCcccccCC------------hh
Confidence 4578888999988887777 44678888886 566654444321 1 10 000000000000 01
Q ss_pred CEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC---------------CcEEEEeccccccc
Q psy2110 333 QHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD---------------RLIRVYNHQEVLNA 397 (622)
Q Consensus 333 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------------~~i~i~d~~~~~~~ 397 (622)
++ +.....|..+.+...++.. .+........++|++.++.+.+ ..+.++|+......
T Consensus 215 ~y-------~~f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~ 286 (638)
T 3sbq_A 215 SY-------TMYNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAA 286 (638)
T ss_dssp EE-------EEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHH
T ss_pred hc-------eEEEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHH
Confidence 11 0122334444444444332 2334445667888887776632 23666766532221
Q ss_pred CCCCCCCc-----ceeeeccc-------------cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC------Cee---
Q psy2110 398 GKDGDPEP-----IQKLQDLV-------------NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV------GNL--- 450 (622)
Q Consensus 398 ~~~~~~~~-----~~~~~~~~-------------~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~------~~~--- 450 (622)
...+.... +..+.... .......+.++|||+|+++++.-+.++.+++... +++
T Consensus 287 vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~ 366 (638)
T 3sbq_A 287 VKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADP 366 (638)
T ss_dssp HHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCG
T ss_pred HhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCc
Confidence 11111111 11111111 0011135789999999999887788999999873 221
Q ss_pred ----EEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110 451 ----VKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN 488 (622)
Q Consensus 451 ----~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~ 488 (622)
+..... +......+|.++|....+.- |..|-.|++.
T Consensus 367 ~~~~~ae~e~--GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~ 407 (638)
T 3sbq_A 367 RDVIVGEPEL--GLGPLHTTFDGRGNAYTTLFIDSQVVKWNME 407 (638)
T ss_dssp GGGEEECCBC--CSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred ccceEeeccC--CCcccEEEECCCCceEeeeeecceEEEEecc
Confidence 223332 22378999999994334444 9999999986
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.14 E-value=0.4 Score=41.64 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=62.4
Q ss_pred CCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCc--------eEEEEEeeCCCEEEEEecCCeEEEEeC
Q psy2110 278 SPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDL--------SIVASFDRRGQHVVTGNSKGKVLVLSC 349 (622)
Q Consensus 278 ~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~dg~i~i~d~ 349 (622)
..+..++|+|++. +.++ .++.++-.+..+.....-+.. ... ...+.|+++|.+.++ .||.|+-++.
T Consensus 41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc-ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 4677999999876 4444 666666555533211110000 111 357889999988888 5699988876
Q ss_pred CCccE-------EEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy2110 350 PALEL-------KASFKASTTAIKSIEFARRGNCLLVNTGDRLIR 387 (622)
Q Consensus 350 ~~~~~-------~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 387 (622)
.+... ...-..--..+..|.+.|+|.+.++. |+.++
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 43211 11111222567899999999977666 77654
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.05 E-value=0.51 Score=50.07 Aligned_cols=197 Identities=12% Similarity=0.127 Sum_probs=106.6
Q ss_pred CCCCEEEEeeCC----CcEEEEecCCccccccc-cc---ccCCCcccccccccceEEEEECCCCCEEEEEeCC------C
Q psy2110 151 KRGTLLAVGCND----GRIVLWDFLTRGIAKII-SA---HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND------G 216 (622)
Q Consensus 151 ~d~~~l~s~~~d----g~i~vw~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g 216 (622)
.++.+++.|+.+ ..+.+||..+++....- .. ...... ..-..+.+..++++++.|+.+ .
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R-------~~hs~~~~~~~~~lyv~GG~~~~~~~~~ 468 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVAR-------MCHTFTTISRNNQLLLIGGRKAPHQGLS 468 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCC-------BSCEEEEETTTTEEEEECCBSSTTCBCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccc-------cceEEEEEccCCEEEEEcCCCCCCCccc
Confidence 456777777753 46888888776433222 10 011100 112333443367777777643 3
Q ss_pred eEEEEEcCCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeCCC--cEEEEECCCCcEEEEEe---C---CCCeEEEEEe
Q psy2110 217 RIVLWDFLTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTDN--NVCIWDVLTGECEQKYR---F---PSPILKVQFH 286 (622)
Q Consensus 217 ~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~---~---~~~v~~~~~~ 286 (622)
.+.+||..+.+.... +..... -.+++...+++.++.|+.++ .+.+||..+.+....-. . .....++.+.
T Consensus 469 dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 469 DNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp CCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred cEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 578899887653322 111111 12233324788888887654 79999999877554332 1 1122335556
Q ss_pred CCCCeEEEEeeCC-------CcEEEEEecCCce--------eecccCCCCceEEEEEeeCCCEEEEEec--------CCe
Q psy2110 287 PRNDHMFLVCPMR-------HAAVLVDTDGDHQ--------IVPIDEDSDLSIVASFDRRGQHVVTGNS--------KGK 343 (622)
Q Consensus 287 ~~~~~~~~~~~~~-------~~i~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------dg~ 343 (622)
.+...+++.|+.+ ..+..||+.+..- +.........-..++...+++.++.|+. ...
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 627 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS 627 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe
Confidence 5545677777652 3588899887651 1111111111123333333777777774 345
Q ss_pred EEEEeCCCccEE
Q psy2110 344 VLVLSCPALELK 355 (622)
Q Consensus 344 i~i~d~~~~~~~ 355 (622)
+.+||+.+.+-.
T Consensus 628 v~~yd~~t~~W~ 639 (695)
T 2zwa_A 628 IISLDPLSETLT 639 (695)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCeEE
Confidence 899999877644
No 346
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.88 E-value=0.14 Score=44.46 Aligned_cols=145 Identities=10% Similarity=-0.040 Sum_probs=82.5
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE------EEEEeC--CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC------EQKYRF--PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD 308 (622)
Q Consensus 237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 308 (622)
..+..++|+|+|.+.+. .+|.++-.+..+... ...+.. -....++.|.|++..+ ++ .++.|+-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LY-av--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLY-AV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEE-EE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEE-Ee--CCCEEEEeCCC
Confidence 47789999999985555 677777766654221 122210 0124788899988733 33 55888776653
Q ss_pred CCceeec-------ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc------EEEEEe-cCCCCEEEEEEcCCC
Q psy2110 309 GDHQIVP-------IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE------LKASFK-ASTTAIKSIEFARRG 374 (622)
Q Consensus 309 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~-~~~~~i~~~~~s~~~ 374 (622)
+.....- -...-..+..+.+.|+|.+.++. ++.++-....+.. ....+- .....-+-+.|.+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 2211100 01111356789999999888776 7776544333221 111111 233345567799999
Q ss_pred CEEEEEeCCCcEEEEecc
Q psy2110 375 NCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 375 ~~l~~~~~d~~i~i~d~~ 392 (622)
...++. ++ ++|...
T Consensus 194 ~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 194 TLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp CEEEEE--TT--EEEEES
T ss_pred cEEEEe--CC--eEEecC
Confidence 877666 66 444443
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.12 Score=48.77 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCeEEEEEe--CCCCeEEEEe-eCCCcEEEEEecCCceeecccC----C
Q psy2110 249 YKIISASTDNNVCIWDVLTGECEQKYRFP--SPILKVQFH--PRNDHMFLVC-PMRHAAVLVDTDGDHQIVPIDE----D 319 (622)
Q Consensus 249 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~--~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~----~ 319 (622)
..++.++.||.|.-+|..+|+....+... .++....-. +.+..+++.. ..+|.++.++..++.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999888754 333321100 1122344444 5789998888776643332221 1
Q ss_pred CCceEE---EEE-e----eCCCEEEEEecCCeEEEEeCCCccEEEEEec
Q psy2110 320 SDLSIV---ASF-D----RRGQHVVTGNSKGKVLVLSCPALELKASFKA 360 (622)
Q Consensus 320 ~~~~~~---~~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 360 (622)
...+.. ..+ . ..+..+++|+.+|.+...|+.+|+.+..+..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 111110 000 0 1456889999999999999999999998874
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.46 E-value=0.71 Score=48.96 Aligned_cols=189 Identities=12% Similarity=0.086 Sum_probs=100.6
Q ss_pred CCCCEEEEEeCC----CeEEEEEcCCCceEEEe-c------cCCcCeeEEEEcC-CCCEEEEEeCC------CcEEEEEC
Q psy2110 204 KRGTLLAVGCND----GRIVLWDFLTRGIAKII-S------AHMHPVCSISWSR-NGYKIISASTD------NNVCIWDV 265 (622)
Q Consensus 204 ~~g~~l~~~~~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~~~~s~-~~~~l~s~~~d------~~i~iwd~ 265 (622)
.++.+++.|+.+ ..+.+||..+++....- . .....-.+++... +++.++.|+.+ +.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777777743 46888998877644322 1 1111112333333 67777777643 35889999
Q ss_pred CCCcEEEEEeCCCCe--EEEEEeCCCCeEEEEeeCCC--cEEEEEecCCceeec-----ccCCCCceEEEEEeeC-CCEE
Q psy2110 266 LTGECEQKYRFPSPI--LKVQFHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVP-----IDEDSDLSIVASFDRR-GQHV 335 (622)
Q Consensus 266 ~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~l 335 (622)
.+.+....-..+.+. .+++...++ .+++.|+.++ .+.+||..+..-... ..........+.+..+ ++.+
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 887655443322221 222232344 4677766544 688898876532211 1112222233555555 6677
Q ss_pred EEEec--C-----CeEEEEeCCCccE-----EEEEec---CCCCEEEEEEcCCCCEEEEEeC--------CCcEEEEecc
Q psy2110 336 VTGNS--K-----GKVLVLSCPALEL-----KASFKA---STTAIKSIEFARRGNCLLVNTG--------DRLIRVYNHQ 392 (622)
Q Consensus 336 ~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~---~~~~i~~~~~s~~~~~l~~~~~--------d~~i~i~d~~ 392 (622)
+.|+. + ..+.+||+.+.+. ...+.. ....-.+++...+++.++.|+. ...|.+||+.
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 77765 2 4688999887661 122211 1111112333333677777763 3458899887
Q ss_pred c
Q psy2110 393 E 393 (622)
Q Consensus 393 ~ 393 (622)
+
T Consensus 635 t 635 (695)
T 2zwa_A 635 S 635 (695)
T ss_dssp T
T ss_pred C
Confidence 3
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.43 E-value=6.7 Score=38.92 Aligned_cols=114 Identities=12% Similarity=0.062 Sum_probs=59.0
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCccc-ccccccceEEEEECCC---CCEEEEE-eC--C
Q psy2110 144 AVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDG-ALDCISLAVTCAFNKR---GTLLAVG-CN--D 215 (622)
Q Consensus 144 v~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~---g~~l~~~-~~--d 215 (622)
.+.|+|.|||. .|+++...|.|++++.........+..-......+ ..........++|+|+ ..+|++. +. +
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 36999999996 56666788999999743221111111000000000 0000134678999996 2333332 21 1
Q ss_pred ----------CeEEEEEcCCC----------ceEEEec--cCCcCeeEEEEcCCCCEEEEEeCC
Q psy2110 216 ----------GRIVLWDFLTR----------GIAKIIS--AHMHPVCSISWSRNGYKIISASTD 257 (622)
Q Consensus 216 ----------g~i~iwd~~~~----------~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d 257 (622)
..|.-|.+..+ +.+..+. ...+....|+|.|||.+.++.+..
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 13444665421 2222222 223456889999999877766543
No 350
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=93.34 E-value=5.8 Score=37.95 Aligned_cols=192 Identities=13% Similarity=0.120 Sum_probs=99.1
Q ss_pred CcEEEEECCCC--cEEEEEeCC-------CCeEEEEEe---CC----CCeEEEEeeCCCcEEEEEecCCceeecccCCCC
Q psy2110 258 NNVCIWDVLTG--ECEQKYRFP-------SPILKVQFH---PR----NDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSD 321 (622)
Q Consensus 258 ~~i~iwd~~~~--~~~~~~~~~-------~~v~~~~~~---~~----~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 321 (622)
-.|.+||+.+. +.++.+..+ +.+..+.+. |. +...+++-.....+.++|+.+++..+.....
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence 36888999999 888888754 236677777 22 2334444445678999999887665544211
Q ss_pred ceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEeccccccc
Q psy2110 322 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARR----GNCLLVNTGDRLIRVYNHQEVLNA 397 (622)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~d~~i~i~d~~~~~~~ 397 (622)
+.|+....++ -+|.-.- + ...+..|+++|+ ++.|......+. ++|.+.+....
T Consensus 201 ------~~pd~~~~~~--i~G~~~~-----------~---~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~ 257 (381)
T 3q6k_A 201 ------FKAERPTKFD--YGGKEYE-----------F---KAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELK 257 (381)
T ss_dssp ------GSCCSCEEEE--ETTEEEE-----------E---CCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHS
T ss_pred ------CccccCcceE--ECCEEeE-----------e---ccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhh
Confidence 2233111111 1221111 1 256889999998 788888765542 34444322111
Q ss_pred CCCCCCCcceeeeccccceeeeeEEEc-CCCCeEEEeeCCCCeEEEEECCC-----CeeEEEEecCCCCceeEEEECCCC
Q psy2110 398 GKDGDPEPIQKLQDLVNKTMWKKCCFS-GDGEYVCAGSARQHALYIWEKSV-----GNLVKILHGTKGELLLDVVWHPVR 471 (622)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~v~~v~~sp~~ 471 (622)
... ....++.+-..........+++. .+|...++-- ..+.|..|+..+ +......+...-.-+..+.+.+++
T Consensus 258 ~~~-~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~-~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g 335 (381)
T 3q6k_A 258 QKG-GKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEA-NTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKG 335 (381)
T ss_dssp STT-CCCCCEEEEECCTTCCEEEEEECTTTCEEEEEES-SSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTS
T ss_pred Ccc-hhhceEEeeecCCCCCcceEEEeCCCCeEEEEec-cCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCC
Confidence 111 11222222211111222345675 4565454444 488999999875 122222222221225566666555
Q ss_pred CEEEE
Q psy2110 472 PIIAS 476 (622)
Q Consensus 472 ~~l~s 476 (622)
.+.+.
T Consensus 336 ~Lwv~ 340 (381)
T 3q6k_A 336 GLWFM 340 (381)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 54333
No 351
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=93.04 E-value=5.9 Score=37.15 Aligned_cols=206 Identities=10% Similarity=0.023 Sum_probs=104.7
Q ss_pred cCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEE-EEcC--CCCEEEEecCCCCeEEEEEcCCCc
Q psy2110 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKC-CFSG--DGEYVCAGSARQHALYIWEKSVGN 115 (622)
Q Consensus 39 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sp--~~~~l~~~~~~~~~i~vwd~~~~~ 115 (622)
....++.-+..|.+..................++..+..+.....+.++ .+.+ +..++++.+.. |.++--.+..-.
T Consensus 52 t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~-G~iKr~~l~~~~ 130 (327)
T 3uc1_A 52 THDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRN-GLVKKSKLTDFD 130 (327)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETT-SEEEEEEGGGGC
T ss_pred CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCC-CEEEEeEHHHhh
Confidence 3444555555555544443332222222333444444445455555544 4443 57788888865 999988765322
Q ss_pred e-------EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecC--CcccccccccccCCC
Q psy2110 116 L-------VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL--TRGIAKIISAHMHPE 186 (622)
Q Consensus 116 ~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~ 186 (622)
. ...++.. +.+ ..+........|+..+..|.+..+... .-.....- ....
T Consensus 131 ~~~r~G~~~i~lke~-D~l-----------------v~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~---a~Gv 189 (327)
T 3uc1_A 131 SNRSGGIVAVNLRDN-DEL-----------------VGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA---TSGV 189 (327)
T ss_dssp CCCSSCEESCBCCTT-CCE-----------------EEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT---SBCE
T ss_pred ccccCceEEEEECCC-CEE-----------------EEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC---CCCe
Confidence 1 1112221 222 234344445567777888988888766 21111000 0000
Q ss_pred cccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-------eEEEec--cCCcCeeEEEEcCCCCEEEEEeCC
Q psy2110 187 FDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG-------IAKIIS--AHMHPVCSISWSRNGYKIISASTD 257 (622)
Q Consensus 187 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~-------~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d 257 (622)
....+.....|.++...+++..|+..+..|.++.-.+..-. -+..++ .-.+.+..+....+...++..+.+
T Consensus 190 ~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~ 269 (327)
T 3uc1_A 190 QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSG 269 (327)
T ss_dssp ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGG
T ss_pred eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCC
Confidence 00111122346666665666788899999999988765321 122222 212345444444444566666777
Q ss_pred CcEEEEECC
Q psy2110 258 NNVCIWDVL 266 (622)
Q Consensus 258 ~~i~iwd~~ 266 (622)
|.+.-++..
T Consensus 270 G~~ir~~~~ 278 (327)
T 3uc1_A 270 GGVIRTAAR 278 (327)
T ss_dssp GCEEEEEGG
T ss_pred CeEEEEehh
Confidence 777666653
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.16 E-value=6.9 Score=35.82 Aligned_cols=218 Identities=14% Similarity=0.066 Sum_probs=106.0
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL 224 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~ 224 (622)
..++..... .++. . ||.|..|-......+..-.. ....|..++...... ++. . +|.|+.|-..
T Consensus 27 ~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~-----------~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n 89 (282)
T 3qhy_B 27 DAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAA-----------TQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGN 89 (282)
T ss_dssp CEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGG-----------GGSCCCEEEECSSEE-EEE-E-TTEEEEEECC
T ss_pred cEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCcc-----------CCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCC
Confidence 456554332 2333 4 89999997554322211000 012355555554332 333 4 8999998765
Q ss_pred CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110 225 TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT-GECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV 303 (622)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~ 303 (622)
....+..-..-...|..++...+ +.+.-. +|.|+.|-... ++.-........|..++.... +.++. . ++.++
T Consensus 90 ~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l-~-~G~v~ 162 (282)
T 3qhy_B 90 EDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAV-K-NGGVI 162 (282)
T ss_dssp TTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-E-TTEEE
T ss_pred CCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEE-E-CCEEE
Confidence 43221111111246777776543 333344 89999997653 221111112345655554432 23333 3 68888
Q ss_pred EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q psy2110 304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD 383 (622)
Q Consensus 304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 383 (622)
.|-.....++.........+..++... .+.++- .+|.|+.|-....-.+-.-......|..++-..... ++.. |
T Consensus 163 ~wG~n~~gqlg~p~~~~~~v~~i~~G~--~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al~--~ 236 (282)
T 3qhy_B 163 AWGDNYFGQTTVPAEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS-LALK--N 236 (282)
T ss_dssp EEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE-EEEE--T
T ss_pred EecCCCCCCCCCceecCCCeEEEEecC--CEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE-EEEE--C
Confidence 887654322211111123454444433 333333 589999997543211111111123566776554433 3333 9
Q ss_pred CcEEEEecc
Q psy2110 384 RLIRVYNHQ 392 (622)
Q Consensus 384 ~~i~i~d~~ 392 (622)
+.|+.|-..
T Consensus 237 g~v~~wG~n 245 (282)
T 3qhy_B 237 GKVIAWGSS 245 (282)
T ss_dssp TEEEEESTT
T ss_pred CEEEEecCC
Confidence 999999766
No 353
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=91.44 E-value=8.9 Score=35.60 Aligned_cols=192 Identities=13% Similarity=0.035 Sum_probs=95.2
Q ss_pred cCCcEEEeccCCCeEEEEeccccce-----------------------ecccCceEEeecCCceEEEeechhhhhcCCCC
Q psy2110 11 RRGQHVVTGNSKGKVLVLSCPALEL-----------------------KASRGNCLLVNTGDRLIRVYNHQEVLNAGKDG 67 (622)
Q Consensus 11 pdg~~latg~~dg~v~vwd~~~~~~-----------------------~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 67 (622)
|+..++++.+.+|.|+--....... .......++..+..|.+.-.............
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 4556777778888887654432111 12234455555666665555444333222222
Q ss_pred CCccchhhhhhccccceeEE-EEc--CCCCEEEEecCCCCeEEEEEcCCCc-------eEEEEeccCcceeEEEEeecCc
Q psy2110 68 DPEPIQKLQDLVNKTMWKKC-CFS--GDGEYVCAGSARQHALYIWEKSVGN-------LVKILHGTKGELLLDVVEFDGA 137 (622)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~-~~s--p~~~~l~~~~~~~~~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~ 137 (622)
...+...+..+.....+.++ ... .++.+++..+.. |.++--.+..-. ....+..+ +.+
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~-G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~l---------- 148 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN-GTVKKTVLTEFNRLRTAGKVAIKLVDG-DEL---------- 148 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEEEGGGGTTCCTTCEESSCCCTT-CCE----------
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-CeEEEEEHHHhhccccCCeEEEEECCC-CEE----------
Confidence 23333333334444455544 332 345667777765 899888764211 11112222 222
Q ss_pred cccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe
Q psy2110 138 LDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217 (622)
Q Consensus 138 ~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 217 (622)
..+....+...|+..+.+|.+..++...-..... .......-.+.....|.++....++..+++.+..|.
T Consensus 149 -------v~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr---~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~ 218 (307)
T 1zi0_A 149 -------IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC---NTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGY 218 (307)
T ss_dssp -------EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT---TCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSE
T ss_pred -------EEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCC---CCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCc
Confidence 2333334445677777888888777654211110 000000011111234556655555667888888999
Q ss_pred EEEEEcC
Q psy2110 218 IVLWDFL 224 (622)
Q Consensus 218 i~iwd~~ 224 (622)
++-.++.
T Consensus 219 ~Kr~~~~ 225 (307)
T 1zi0_A 219 GKRTAVA 225 (307)
T ss_dssp EEEECGG
T ss_pred eEEEEHH
Confidence 8888764
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=90.59 E-value=12 Score=35.72 Aligned_cols=150 Identities=8% Similarity=0.096 Sum_probs=89.6
Q ss_pred eEEEEEcCCC--ceEEEEeccCcceeEEEEeecCccccccceeEEEEc---CC----CCEEEEee-CCCcEEEEecCCcc
Q psy2110 105 ALYIWEKSVG--NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFN---KR----GTLLAVGC-NDGRIVLWDFLTRG 174 (622)
Q Consensus 105 ~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s---~d----~~~l~s~~-~dg~i~vw~~~~~~ 174 (622)
.|.+||+.++ +.++++.-....+. ..+.+..+++. |+ +.++..+. ...-|.|+|+.+++
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~-----------~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~ 192 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE-----------KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD 192 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC-----------CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc-----------cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc
Confidence 6889999999 99988876544331 11223466665 22 33444333 45789999999987
Q ss_pred cccccccccCCCcccc-------cccccceEEEEECCC----CCEEEEEeCCCeEEEEEcCC-----Cc---eEEEeccC
Q psy2110 175 IAKIISAHMHPEFDGA-------LDCISLAVTCAFNKR----GTLLAVGCNDGRIVLWDFLT-----RG---IAKIISAH 235 (622)
Q Consensus 175 ~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~----g~~l~~~~~dg~i~iwd~~~-----~~---~~~~~~~~ 235 (622)
..+.+.....+...+. +.....+..++++|+ ++.|+.....+. ++|.+.+ .. .++.+ +.
T Consensus 193 swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~-G~ 270 (381)
T 3q6k_A 193 SWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELL-GN 270 (381)
T ss_dssp EEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEE-EE
T ss_pred EEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEe-ee
Confidence 7666543333321111 111246889999998 788887765542 4444332 21 11222 22
Q ss_pred C---cCeeEEEEc-CCCCEEEEEeCCCcEEEEECCC
Q psy2110 236 M---HPVCSISWS-RNGYKIISASTDNNVCIWDVLT 267 (622)
Q Consensus 236 ~---~~v~~~~~s-~~~~~l~s~~~d~~i~iwd~~~ 267 (622)
. ..-..+++. .+|..+++--..+.|..|+..+
T Consensus 271 kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 271 RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 2 233456675 5777777777778999999875
No 355
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=90.49 E-value=20 Score=37.89 Aligned_cols=94 Identities=12% Similarity=0.142 Sum_probs=54.7
Q ss_pred CCCeEEEEEcCCCc-------eEEE-ec-cCCcCeeEEEEcCCCCEEEEEeCCC--cEEEEECCCCc-EEEE-EeCC--C
Q psy2110 214 NDGRIVLWDFLTRG-------IAKI-IS-AHMHPVCSISWSRNGYKIISASTDN--NVCIWDVLTGE-CEQK-YRFP--S 278 (622)
Q Consensus 214 ~dg~i~iwd~~~~~-------~~~~-~~-~~~~~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~-~~~~-~~~~--~ 278 (622)
..+.|...++.++. ..+. +. .....+..+.|..+ ..+++...++ .|.++++.+++ .... +..+ +
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 46778899987642 1222 32 23456778888865 5666766666 46777776664 1223 3332 4
Q ss_pred CeEEEEEeCCCCeEEEEeeC---CCcEEEEEec
Q psy2110 279 PILKVQFHPRNDHMFLVCPM---RHAAVLVDTD 308 (622)
Q Consensus 279 ~v~~~~~~~~~~~~~~~~~~---~~~i~~~d~~ 308 (622)
.+......+++..+++..+. -..+..+|+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 397 AIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 56666667777666655433 2345555543
No 356
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=90.47 E-value=12 Score=35.61 Aligned_cols=145 Identities=17% Similarity=0.091 Sum_probs=74.9
Q ss_pred EccCCcEEEeccCCCeEEEEeccccc-----------ee------------cccCceEEeecCCceEEEeechhhhhcCC
Q psy2110 9 FDRRGQHVVTGNSKGKVLVLSCPALE-----------LK------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGK 65 (622)
Q Consensus 9 fspdg~~latg~~dg~v~vwd~~~~~-----------~~------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 65 (622)
+-|+..++++.+.+|.|+--.+.... +. ......++..+..|.+.-+..........
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 44677888999999999975432210 00 22334455555566555444433322222
Q ss_pred CCCCccchhhhhhccccceeEE-EEc--CCCCEEEEecCCCCeEEEEEcCCCce-------EEEEeccCcceeEEEEeec
Q psy2110 66 DGDPEPIQKLQDLVNKTMWKKC-CFS--GDGEYVCAGSARQHALYIWEKSVGNL-------VKILHGTKGELLLDVVEFD 135 (622)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~-~~s--p~~~~l~~~~~~~~~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~ 135 (622)
.....++..+..+.....+.++ .+. .++.+|+.++.. |.++...+..-.. ...++. .+.+
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~-G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~l-------- 152 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRN-GTVKKTPLSEFAFRLARGKIAINLDE-GDAL-------- 152 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEEEGGGGCSCCTTCEESSCCCT-TCCE--------
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-CeEEEeEHHHhhcccCCceEEEEeCC-CCEE--------
Confidence 2233333333233444455544 333 245678888765 8998887643221 111111 1122
Q ss_pred CccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCC
Q psy2110 136 GALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT 172 (622)
Q Consensus 136 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 172 (622)
..+........|+..+..|.+..+....
T Consensus 153 ---------v~v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 153 ---------VGVALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp ---------EEEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred ---------EEEEEeCCCceEEEEeCCCeEEEEEccc
Confidence 2333334455677777888887776543
No 357
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=90.27 E-value=12 Score=35.02 Aligned_cols=193 Identities=12% Similarity=0.024 Sum_probs=98.0
Q ss_pred cCCcEEEeccCCCeEEEEeccccc------------------eecccCceEEeecCCceEEEeechhhhhcCCCCCCccc
Q psy2110 11 RRGQHVVTGNSKGKVLVLSCPALE------------------LKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI 72 (622)
Q Consensus 11 pdg~~latg~~dg~v~vwd~~~~~------------------~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 72 (622)
|+..++++.+.+|.|+--...... +.......++..+..|.+.-................++
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 566788888899999876543210 01223445555566666555544433332222233333
Q ss_pred hhhhhhccccceeEE-EEcC--CCCEEEEecCCCCeEEEEEcCCCc------eEE--EEeccCcceeEEEEeecCccccc
Q psy2110 73 QKLQDLVNKTMWKKC-CFSG--DGEYVCAGSARQHALYIWEKSVGN------LVK--ILHGTKGELLLDVVEFDGALDCI 141 (622)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~sp--~~~~l~~~~~~~~~i~vwd~~~~~------~~~--~~~~~~~~v~~~~~~~~~~~~~~ 141 (622)
..+..+.....+.++ ...+ ++.+|+..+.. |.++.-.+..-. -+. .+... +.+
T Consensus 83 ~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~-G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~l-------------- 146 (323)
T 1wp5_A 83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRN-GMVKKTELKHYKAQRYSKPLTGINLKND-DQV-------------- 146 (323)
T ss_dssp GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETT-SEEEEEEGGGGCCSCCSSCEECSCCCTT-CCE--------------
T ss_pred hhccCCCCCCEEEEEEEecccCCCceEEEEeCC-CeEEEeEHHHhhhccccCceEEEEeCCC-CEE--------------
Confidence 333334444445544 4433 25677777765 999888764211 111 12211 222
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC-EEEEEeCCCeEEE
Q psy2110 142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVL 220 (622)
Q Consensus 142 ~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~i 220 (622)
..+........|+..+.+|.+..+....-..... .........+.....|.++..-+++. .|++.+..|..+.
T Consensus 147 ---v~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR---~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr 220 (323)
T 1wp5_A 147 ---VDVHLTDGMNELFLVTHNGYALWFDESEVSIVGV---RAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKK 220 (323)
T ss_dssp ---EEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCS---SCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEE
T ss_pred ---EEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCC---CCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEE
Confidence 2333434455677778889888887654211111 00000001111112345554333444 6778888888888
Q ss_pred EEcCC
Q psy2110 221 WDFLT 225 (622)
Q Consensus 221 wd~~~ 225 (622)
.++..
T Consensus 221 ~~~~e 225 (323)
T 1wp5_A 221 MKLTE 225 (323)
T ss_dssp EEGGG
T ss_pred EEHHH
Confidence 77653
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=89.86 E-value=22 Score=37.51 Aligned_cols=240 Identities=8% Similarity=0.065 Sum_probs=117.5
Q ss_pred eEEE-EcCCCCEEEEEeC-C----CcEEEEECCCCcEEEE-EeCCC--------CeEEEEEeCCCCeEEEEee-------
Q psy2110 240 CSIS-WSRNGYKIISAST-D----NNVCIWDVLTGECEQK-YRFPS--------PILKVQFHPRNDHMFLVCP------- 297 (622)
Q Consensus 240 ~~~~-~s~~~~~l~s~~~-d----~~i~iwd~~~~~~~~~-~~~~~--------~v~~~~~~~~~~~~~~~~~------- 297 (622)
..+. ++|++++++.+-. . ..++++|+.+++.+.. +.... ....++|. +++.++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcC
Confidence 3444 7888887665432 2 3699999999886531 11000 11344776 3444555421
Q ss_pred ---CCCcEEEEEecCCc--eeecccCCC-CceEEEEEeeCCCE-----EEEEe---cCCeEEEEeCCC--ccEEEEEecC
Q psy2110 298 ---MRHAAVLVDTDGDH--QIVPIDEDS-DLSIVASFDRRGQH-----VVTGN---SKGKVLVLSCPA--LELKASFKAS 361 (622)
Q Consensus 298 ---~~~~i~~~d~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~-----l~~~~---~dg~i~i~d~~~--~~~~~~~~~~ 361 (622)
....++.|.+.+.. -...+.... ........++++++ +++.+ ....+++.+... ++ +..+...
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 289 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP 289 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC
Confidence 22457778776542 122222222 22334556667662 33333 123566666543 33 2333322
Q ss_pred CCCEEEEEEcCCCCEEEEE----------eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEE
Q psy2110 362 TTAIKSIEFARRGNCLLVN----------TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVC 431 (622)
Q Consensus 362 ~~~i~~~~~s~~~~~l~~~----------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 431 (622)
... .+..+.++.+++.. ...+.|.+.++........ .....+.+-.+.....+..+.+..+ .+++
T Consensus 290 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 290 SDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTES--DKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp TTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGG--GCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred Ccc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCccccccc--ccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 221 22334455554432 1356788888874211000 0112222223333445567788765 4444
Q ss_pred EeeCCCC--eEEEEECCCCe-eEEE-EecCCCCceeEEEECCCCC-EEEEEe--C--CcEEEeec
Q psy2110 432 AGSARQH--ALYIWEKSVGN-LVKI-LHGTKGELLLDVVWHPVRP-IIASIS--S--GVVSLWAQ 487 (622)
Q Consensus 432 ~~~~~d~--~i~iwd~~~~~-~~~~-~~~~~~~~v~~v~~sp~~~-~l~s~~--d--g~v~iw~~ 487 (622)
+... ++ .|+++++.+++ .... +.-.....+..+..++++. ++++.+ . +.+..+++
T Consensus 365 ~~~~-~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 365 ATYD-NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEEE-TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEEE-CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 4443 44 47788876664 2333 3322212266677777765 444433 2 56666665
No 359
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=89.77 E-value=13 Score=34.63 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=95.7
Q ss_pred ccCCcEEEeccCCCeEEEEecccccee-----------------------cccCceEEeecCCceEEEeechhhhhcCCC
Q psy2110 10 DRRGQHVVTGNSKGKVLVLSCPALELK-----------------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKD 66 (622)
Q Consensus 10 spdg~~latg~~dg~v~vwd~~~~~~~-----------------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 66 (622)
-|+..++++.+.+|.|+--........ ......++..+..|.+.-............
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 356678888899999987765432111 122345556666666655554432222112
Q ss_pred CCCccchhhhhhccccceeEE-EEcC--CCCEEEEecCCCCeEEEEEcCCCce-------EEEEeccCcceeEEEEeecC
Q psy2110 67 GDPEPIQKLQDLVNKTMWKKC-CFSG--DGEYVCAGSARQHALYIWEKSVGNL-------VKILHGTKGELLLDVVEFDG 136 (622)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~-~~sp--~~~~l~~~~~~~~~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~ 136 (622)
....++.....+.....+.++ .... +..+|+..+.. |.++...+..-.. ...+.. .+.+
T Consensus 85 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~-G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~l--------- 153 (312)
T 1suu_A 85 SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTAS-GKIARFESTDFKAVKSRGVIVIKLND-KDFV--------- 153 (312)
T ss_dssp ---CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEEEGGGGCC----CEECBCCCT-TCCE---------
T ss_pred CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCC-CeEEEEEHHHhhccCCCcEEEEecCC-CCEE---------
Confidence 222222222233334444444 3321 45667777754 8888887643211 111121 1222
Q ss_pred ccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC
Q psy2110 137 ALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG 216 (622)
Q Consensus 137 ~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 216 (622)
..+....+...++..+.+|.+..+....-.....- ......-.+.....|..+..-.++..+++.+..|
T Consensus 154 --------v~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~---~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G 222 (312)
T 1suu_A 154 --------TSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRG---TQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENG 222 (312)
T ss_dssp --------EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT---BCCEECCCCCTTCCEEEEEECTTCSEEEEEETTS
T ss_pred --------EEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCC---CCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCC
Confidence 24444444557888888999988877542111110 0000000111112355555545566778888899
Q ss_pred eEEEEEcCC
Q psy2110 217 RIVLWDFLT 225 (622)
Q Consensus 217 ~i~iwd~~~ 225 (622)
..+...+..
T Consensus 223 ~~kr~~~~e 231 (312)
T 1suu_A 223 YGKRLNMSK 231 (312)
T ss_dssp EEEEEEGGG
T ss_pred ceEEEEHHH
Confidence 999888753
No 360
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=88.63 E-value=17 Score=34.64 Aligned_cols=150 Identities=9% Similarity=0.117 Sum_probs=85.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCC---------CcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC-------
Q psy2110 246 RNGYKIISASTDNNVCIWDVLT---------GECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG------- 309 (622)
Q Consensus 246 ~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~------- 309 (622)
++..++++.+.+|.|+--.+.. +.....++....+..+........++ ..+..|.++.+....
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll-~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLL-TFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEE-EEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEE-EEeCCCeEEEEEHHHCcCCCcc
Confidence 5667888888999888764321 22233334445566665555555444 445566655554321
Q ss_pred --Cceee---cccCCCCceEEE-EEe--eCCCEEEEEecCCeEEEEeCCCcc-------EEEEEecCCCCEEEEEEcCCC
Q psy2110 310 --DHQIV---PIDEDSDLSIVA-SFD--RRGQHVVTGNSKGKVLVLSCPALE-------LKASFKASTTAIKSIEFARRG 374 (622)
Q Consensus 310 --~~~~~---~~~~~~~~~~~~-~~~--~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~s~~~ 374 (622)
+.++. .+.. ...|..+ .+. .++.+|+..+..|.++...+.... ....+.. ...+..+......
T Consensus 84 a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 84 ARGRPIINWIPLES-GERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGD 161 (370)
T ss_dssp SCCEEGGGSCCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSC
T ss_pred cCCcCHhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCC
Confidence 11111 2222 3344443 332 245689999999999988754321 1122322 3455555555566
Q ss_pred CEEEEEeCCCcEEEEecccccccC
Q psy2110 375 NCLLVNTGDRLIRVYNHQEVLNAG 398 (622)
Q Consensus 375 ~~l~~~~~d~~i~i~d~~~~~~~~ 398 (622)
..++..+.+|.+..+........+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~g 185 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMG 185 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCC
T ss_pred ceEEEEeCCCeEEEEEccccCccC
Confidence 678888999998888887654443
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.08 E-value=22 Score=35.21 Aligned_cols=102 Identities=14% Similarity=0.043 Sum_probs=57.8
Q ss_pred ceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCc---eEEEec---------cCCcCeeEEEEcCC----CCEEEEEeC--
Q psy2110 196 LAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRG---IAKIIS---------AHMHPVCSISWSRN----GYKIISAST-- 256 (622)
Q Consensus 196 ~v~~~~~s~~g~-~l~~~~~dg~i~iwd~~~~~---~~~~~~---------~~~~~v~~~~~s~~----~~~l~s~~~-- 256 (622)
....++|.|+|. .|+++...|.|++++..... .+..+. ........|+|+|+ +...++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 357899999996 45566788999999753221 122221 11356789999996 433333221
Q ss_pred C----------CcEEEEECCC----------CcEEEEEe---CCCCeEEEEEeCCCCeEEEEee
Q psy2110 257 D----------NNVCIWDVLT----------GECEQKYR---FPSPILKVQFHPRNDHMFLVCP 297 (622)
Q Consensus 257 d----------~~i~iwd~~~----------~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~ 297 (622)
+ ..|.-|.+.. .+.+..+. .......|.|.||+..++.++.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344455432 12233322 2345678999999975444443
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=86.03 E-value=22 Score=33.04 Aligned_cols=192 Identities=8% Similarity=0.109 Sum_probs=110.2
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCceE---------EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC---CCcEE
Q psy2110 204 KRGTLLAVGCNDGRIVLWDFLTRGIA---------KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL---TGECE 271 (622)
Q Consensus 204 ~~g~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~---~~~~~ 271 (622)
++..++++.+.+|.|+-..+..-... ..++.. ..+..+........++..+..|.++-+... .....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 34567888899999998876543211 112222 344444444455677777788876666543 11100
Q ss_pred E---------EEeCCCCeEEEEEeCC--CCeEEEEeeCCCcEEEEEecC-------CceeecccCCCCceEEEEEeeCCC
Q psy2110 272 Q---------KYRFPSPILKVQFHPR--NDHMFLVCPMRHAAVLVDTDG-------DHQIVPIDEDSDLSIVASFDRRGQ 333 (622)
Q Consensus 272 ~---------~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 333 (622)
. .+.....+.++...++ ....++..+..|.++...+.. +.....+.. .+.+..+.......
T Consensus 85 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 85 SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp ---CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 0 1223345555544431 233466678888888877642 222333333 44455555545567
Q ss_pred EEEEEecCCeEEEEeCCCc-------cEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccccc
Q psy2110 334 HVVTGNSKGKVLVLSCPAL-------ELKASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNA 397 (622)
Q Consensus 334 ~l~~~~~dg~i~i~d~~~~-------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 397 (622)
.++..+.+|.+..+....- +-+..+.. ....|.++..-.++..+++.+..|..+...+.+....
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~ 235 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISEL 235 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBC
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhccc
Confidence 7888899999888876431 11222221 2355666666556677888999999999998865443
No 363
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.62 E-value=26 Score=33.66 Aligned_cols=215 Identities=10% Similarity=0.035 Sum_probs=98.5
Q ss_pred CeeEEEEcC-C-CCEEEEEeCCCcEEEEECCCCcEEEEEe--------------------CCCCeEEEEEeCCC-CeEEE
Q psy2110 238 PVCSISWSR-N-GYKIISASTDNNVCIWDVLTGECEQKYR--------------------FPSPILKVQFHPRN-DHMFL 294 (622)
Q Consensus 238 ~v~~~~~s~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~~~~v~~~~~~~~~-~~~~~ 294 (622)
.|.++++.| + ...|+.+...+.|...+ ..++.-..+. ....+.++.+.|.. ..+++
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 577889986 2 45566665555555443 2333222221 11246788898854 33444
Q ss_pred EeeCCCcEEEEEecCCceeecccC--C-----------CCceEEEEEeeC-CCEEEEEecCCeEEEEeCCCccEEEEEec
Q psy2110 295 VCPMRHAAVLVDTDGDHQIVPIDE--D-----------SDLSIVASFDRR-GQHVVTGNSKGKVLVLSCPALELKASFKA 360 (622)
Q Consensus 295 ~~~~~~~i~~~d~~~~~~~~~~~~--~-----------~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 360 (622)
. ...+.+...+ ..+..-..+.. . ...+..+.+++. ...|+++...+ |...+ ..++....+..
T Consensus 195 g-~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~ 270 (394)
T 3b7f_A 195 G-MSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGD 270 (394)
T ss_dssp E-EETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGG
T ss_pred E-ECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCC
Confidence 3 3333333222 11111111110 0 124778888885 35677766554 54444 22333333321
Q ss_pred --CC---CCEEEEEEcCC-CCEEEEEeC-----------CCcEEEEecccccccCCCCCCCcceeeec-cccc-----ee
Q psy2110 361 --ST---TAIKSIEFARR-GNCLLVNTG-----------DRLIRVYNHQEVLNAGKDGDPEPIQKLQD-LVNK-----TM 417 (622)
Q Consensus 361 --~~---~~i~~~~~s~~-~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~ 417 (622)
.. ..+.+++++|. ...|.+++. ++...+|.... .......+.. .... ..
T Consensus 271 ~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~D--------gG~tW~~~~~glp~~~~~~~~~ 342 (394)
T 3b7f_A 271 AMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRD--------AGESWQRQDRGLPTDQAWLTVK 342 (394)
T ss_dssp GSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESS--------TTSCCEEECBTSCCSSCCCCCC
T ss_pred CCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECC--------CCCCceECCCCCCCccccceEE
Confidence 11 34567888763 334444432 23334554331 0111121111 1110 01
Q ss_pred eeeEEEcCC-CCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEEC
Q psy2110 418 WKKCCFSGD-GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWH 468 (622)
Q Consensus 418 ~~~~~~spd-g~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s 468 (622)
...++++|. ...|++++. ++.|+.- ...|+--..+..+-.. +.+|+|.
T Consensus 343 ~~~~~~~p~~~~~l~~g~~-~g~l~~S-~D~G~tW~~~~~~lp~-~~~v~~~ 391 (394)
T 3b7f_A 343 RQAMTADAHAPVGVYFGTT-GGEIWAS-ADEGEHWQCIASHLPH-IYAVQSA 391 (394)
T ss_dssp TBSEEECCSSSCCEEEECT-TSCEEEE-SSTTSBCEEEECSCSC-EEEEEEE
T ss_pred EEEEEECCCCCCEEEEEeC-CCeEEEE-CCCCCCceEcccCCCC-eeEEEEe
Confidence 135788874 345666654 4545432 3445544555444333 7777764
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=84.83 E-value=23 Score=32.19 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=68.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCcc------EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCC
Q psy2110 331 RGQHVVTGNSKGKVLVLSCPALE------LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPE 404 (622)
Q Consensus 331 ~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 404 (622)
+..+++..+.+|.++...+.... ....+.. ...+..+........++..+..|.+..+...+....+......
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv 157 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGV 157 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE
Confidence 46789999999999988765432 1112222 3456666666666789999999999999887654443322222
Q ss_pred cceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110 405 PIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS 446 (622)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~ 446 (622)
....+ .....+..+...+++.+++..+. .|.++...+.
T Consensus 158 ~~i~L---~~~d~vv~~~~~~~~~~ll~~T~-~G~~kr~~~~ 195 (276)
T 3no0_A 158 QGIKL---EKNDETSGLRIWNGEPYLLVITA-KGRVKKISHE 195 (276)
T ss_dssp ECCCC---CTTCCEEEEEEESSCSEEEEEET-TSCEEEEEGG
T ss_pred EEEcc---CCCCEEEEEEEeCCCCEEEEEeC-CCcEEEeEHH
Confidence 22222 22344444444455667777776 7777777653
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.34 E-value=20 Score=39.46 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=32.9
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccc
Q psy2110 142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS 180 (622)
Q Consensus 142 ~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 180 (622)
..+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 345677888888999999999999999999998776654
No 366
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=81.97 E-value=5.2 Score=40.89 Aligned_cols=59 Identities=10% Similarity=0.177 Sum_probs=46.4
Q ss_pred eeEEEcCCCCeEEEeeCC-----------CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEE
Q psy2110 419 KKCCFSGDGEYVCAGSAR-----------QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASI 477 (622)
Q Consensus 419 ~~~~~spdg~~l~~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 477 (622)
-.|+|+|.|+++++-... ...+.+.+..++++.+.+.++.+..++.++|+||++.|+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 357999999977765431 23567778888998888999887779999999999977654
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=78.75 E-value=41 Score=31.05 Aligned_cols=192 Identities=9% Similarity=0.074 Sum_probs=100.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEE---------EEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec---C-----
Q psy2110 247 NGYKIISASTDNNVCIWDVLTGECEQ---------KYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD---G----- 309 (622)
Q Consensus 247 ~~~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~---~----- 309 (622)
+...+++.+.+|.|+--.+..-+..+ .+.....+..+........ ++..+..|.++-+... .
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~-ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDH-ILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCE-EEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCE-EEEEECCCEEEEEEhhHCcCCCCCC
Confidence 44567788888888776665422211 1122334444444443443 4444556665555442 1
Q ss_pred -Cceee---cccCCCCceEEEE-Ee--eCCCEEEEEecCCeEEEEeCCCcc-------EEEEEecCCCCEEEEEEcCCCC
Q psy2110 310 -DHQIV---PIDEDSDLSIVAS-FD--RRGQHVVTGNSKGKVLVLSCPALE-------LKASFKASTTAIKSIEFARRGN 375 (622)
Q Consensus 310 -~~~~~---~~~~~~~~~~~~~-~~--~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~s~~~~ 375 (622)
+.++. .+. ....+..+. .. .++.+++..+..|.++-..+.... ....+..+ ..+..+.......
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 81 RGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 11111 222 233444443 22 356788899999999988764211 11123333 5565665655566
Q ss_pred EEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110 376 CLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEK 445 (622)
Q Consensus 376 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~ 445 (622)
.++..+.+|.+..+...+....+..........+ .....+..+....++..|++.+. .|.++-.++
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L---~~~d~Vv~~~~~~~~~~ll~~T~-~G~~Kr~~~ 224 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL---GEGDKVVSLIVPRGDGAILTATQ-NGYGKRTAV 224 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC---CTTCCEEEEECCCSSCEEEEEET-TSEEEEECG
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe---CCCCEEEEEEEecCCCEEEEEEc-CCceEEEEH
Confidence 7888899999888888765444332222222122 22334444544445566777776 777777765
No 368
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=77.39 E-value=11 Score=38.07 Aligned_cols=60 Identities=10% Similarity=0.164 Sum_probs=44.9
Q ss_pred eeEEEcCCCCeEEEeeCC-----------CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110 419 KKCCFSGDGEYVCAGSAR-----------QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS 478 (622)
Q Consensus 419 ~~~~~spdg~~l~~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~ 478 (622)
..++|+++|.+.++.... ...++.++..+|++...+.++....++.++|+||++.|+.+-
T Consensus 479 DnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 468999999877743221 226888888889887777776554599999999999887653
No 369
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=75.92 E-value=46 Score=30.20 Aligned_cols=180 Identities=14% Similarity=0.075 Sum_probs=87.0
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL 224 (622)
Q Consensus 145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~ 224 (622)
..++..... .++. . ||.|..|-......+.. .... ...|..++..... .+.-. +|.|+.|=..
T Consensus 66 ~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~-P~~~----------~~~v~~ia~G~~h--s~al~-~G~v~~wG~n 128 (282)
T 3qhy_B 66 DAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV-PAEA----------RSGVDAIAAGAWA--SYALK-DGKVIAWGDD 128 (282)
T ss_dssp CEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC-CGGG----------SSSEEEEEEETTE--EEEEE-TTEEEEEECC
T ss_pred EEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC-Cccc----------CCCeEEEECcCCE--EEEEe-CCeEEEecCC
Confidence 466655433 3333 4 89999996554322211 0000 1235666655443 33334 8999999765
Q ss_pred CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110 225 TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG-ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV 303 (622)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~ 303 (622)
....+..-......|..++...+. .+.-. ||.|+.|-.... +.-........|..++.... +.++. .++.++
T Consensus 129 ~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al--~~G~v~ 201 (282)
T 3qhy_B 129 SDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL--KDGKVI 201 (282)
T ss_dssp TTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE--ETTEEE
T ss_pred CCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE--ECCeEE
Confidence 432221111123457676664433 22233 688988876532 21111112345666655432 33444 488888
Q ss_pred EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110 304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA 351 (622)
Q Consensus 304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 351 (622)
.|=.....++-.-......+..++..... .++. . +|.++.|-...
T Consensus 202 ~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 202 AWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp EEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE-E-TTEEEEESTTC
T ss_pred EEECCCCCCCCCCcccCCCceEEEcCCCE-EEEE-E-CCEEEEecCCC
Confidence 88765432221111111234444433322 2333 3 88888886543
No 370
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=74.93 E-value=60 Score=31.05 Aligned_cols=179 Identities=12% Similarity=0.010 Sum_probs=83.8
Q ss_pred CEEEEEeCCCeEEEEEcCC-CceEEEe--ccCCcCeeEEEEcC-CCCEEEEEeCCC----cEEEEECCCCcEEEEEeC--
Q psy2110 207 TLLAVGCNDGRIVLWDFLT-RGIAKII--SAHMHPVCSISWSR-NGYKIISASTDN----NVCIWDVLTGECEQKYRF-- 276 (622)
Q Consensus 207 ~~l~~~~~dg~i~iwd~~~-~~~~~~~--~~~~~~v~~~~~s~-~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~-- 276 (622)
..|.+|...| +.+++... +..-..+ ......|.+|++.| +...|..+...| .|... ...++.-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccc
Confidence 3566777666 55555433 2222211 12235699999998 333444444444 34433 233332222221
Q ss_pred --C-----------CCeEEEEEeCCC-CeEEEEeeCCCcEEEEEecCC--ceeeccc----------------CCCCceE
Q psy2110 277 --P-----------SPILKVQFHPRN-DHMFLVCPMRHAAVLVDTDGD--HQIVPID----------------EDSDLSI 324 (622)
Q Consensus 277 --~-----------~~v~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~--~~~~~~~----------------~~~~~~~ 324 (622)
. ..|.++++.|.+ ...+.++...+.+...+-... ..+.... .....+.
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~ 180 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH 180 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence 1 136678888742 223444444444443322111 1221110 1223567
Q ss_pred EEEEeeC-CCEEEEEecCCeEEEEeCCCccEEEEEecC-------------CCCEEEEEEcCC-CCEEEEEeCCCcEEEE
Q psy2110 325 VASFDRR-GQHVVTGNSKGKVLVLSCPALELKASFKAS-------------TTAIKSIEFARR-GNCLLVNTGDRLIRVY 389 (622)
Q Consensus 325 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~s~~-~~~l~~~~~d~~i~i~ 389 (622)
.+.++|. ...++++...+.|...+ ..++....+... ...+.+++++|. ...|.+++..+ |...
T Consensus 181 ~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 181 SILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred EEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 8888873 34555555555454443 223322222110 124889999986 35566666544 4433
No 371
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=68.06 E-value=77 Score=29.42 Aligned_cols=189 Identities=10% Similarity=0.044 Sum_probs=106.5
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCC----ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEEC---CC------CcE
Q psy2110 204 KRGTLLAVGCNDGRIVLWDFLTR----GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV---LT------GEC 270 (622)
Q Consensus 204 ~~g~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~---~~------~~~ 270 (622)
|+...+++.+.+|.|+--.+..- .....++.. ..+..+........|+..+..|.++-+.. .. |.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 44567788889999987765421 111123333 34444444445556777777787655543 21 221
Q ss_pred EE---EEeCCCCeEEEEEeCC--CCeEEEEeeCCCcEEEEEecC--------CceeecccCCCCceEEEEEeeCCCEEEE
Q psy2110 271 EQ---KYRFPSPILKVQFHPR--NDHMFLVCPMRHAAVLVDTDG--------DHQIVPIDEDSDLSIVASFDRRGQHVVT 337 (622)
Q Consensus 271 ~~---~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 337 (622)
+. .+.....|.++...++ ....++..+.+|.++...+.. +.....+... +.+..+........++.
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEE
Confidence 11 1223345665544332 233567778999998887742 1122233333 44445545455667888
Q ss_pred EecCCeEEEEeCCCc-------cEEEEEec-CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccc
Q psy2110 338 GNSKGKVLVLSCPAL-------ELKASFKA-STTAIKSIEFARRGN-CLLVNTGDRLIRVYNHQEV 394 (622)
Q Consensus 338 ~~~dg~i~i~d~~~~-------~~~~~~~~-~~~~i~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~ 394 (622)
.+.+|.+..+....- +-+..+.. ....|.++...+++. .|++.+..|..+..++...
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~ 226 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEF 226 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHc
Confidence 889998888876421 11222221 234566665544445 7888899999888888764
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.43 E-value=26 Score=35.76 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=42.4
Q ss_pred eEEEEcCCCCEEEEecCC-----------CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCC
Q psy2110 85 KKCCFSGDGEYVCAGSAR-----------QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG 153 (622)
Q Consensus 85 ~~~~~sp~~~~l~~~~~~-----------~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~ 153 (622)
--|+|+|.|++++.-..+ .+.+.+.+..++++.+.+.++.+.-. +.++|+||+
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~----------------TG~~fspDg 542 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEV----------------TGISFSPDQ 542 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEE----------------EEEEECTTS
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccC----------------cCeeECCCC
Confidence 458999999966653211 13466667778888888887765543 799999999
Q ss_pred CEEEEe
Q psy2110 154 TLLAVG 159 (622)
Q Consensus 154 ~~l~s~ 159 (622)
+.|.+.
T Consensus 543 ~tlfvn 548 (592)
T 3zwu_A 543 KTLFVG 548 (592)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 877765
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.65 E-value=16 Score=41.28 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=31.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccc
Q psy2110 143 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS 180 (622)
Q Consensus 143 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 180 (622)
.+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 33466777888999999999999999999998776644
No 374
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=60.73 E-value=63 Score=33.75 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=28.8
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCccccccccc
Q psy2110 143 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA 181 (622)
Q Consensus 143 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 181 (622)
.|.++.+ +..+|++-+.|+++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3444444 467999999999999999999987766554
No 375
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=57.47 E-value=1e+02 Score=27.35 Aligned_cols=150 Identities=11% Similarity=0.111 Sum_probs=77.1
Q ss_pred EEEEEecCCeEEEEeCCCccE-EEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecc
Q psy2110 334 HVVTGNSKGKVLVLSCPALEL-KASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL 412 (622)
Q Consensus 334 ~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 412 (622)
.+++.+.+|.|+--....... ...+.. ...+..+........|+..+..|.++-+...+..... ....++..+-..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r--~~G~~i~~~i~L 80 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTL 80 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSS--SCCEEGGGTCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcC--CCCeEeeeeecC
Confidence 344556777666554332110 001222 2344444444445567778888988777766532221 122222222223
Q ss_pred ccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC-------CeeEEEEecCCCCceeEEEEC-CCCCEEEEEe-CCcEE
Q psy2110 413 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV-------GNLVKILHGTKGELLLDVVWH-PVRPIIASIS-SGVVS 483 (622)
Q Consensus 413 ~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~~v~~v~~s-p~~~~l~s~~-dg~v~ 483 (622)
.....+..+....++.+|+.++. .|.++...+.. |.....+... +. +..+... .....|+..+ .|.+.
T Consensus 81 ~~~e~Iv~~~~~~~~~~lll~T~-~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~-lv~~~~~~~~~~~i~l~T~~G~~l 157 (256)
T 1zvt_A 81 PPGATVDHMLMESDDQKLLMASD-AGYGFVCTFNDLVARNRAGKALITLPEN-AH-VMPPVVIEDASDMLLAITQAGRML 157 (256)
T ss_dssp CTTCCEEEEECCCTTCEEEEEBT-TSEEEEEEGGGGCCCSTTCEECBCCCTT-CC-BCCCEECCCTTCEEEEEETTSEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeC-CCeEEEeEHHHhcccCcCceEEEEECCC-CE-EEEEEEecCCCCEEEEEcCCCeEE
Confidence 33344555533345677777776 89998887632 3333334322 33 5555554 2344555555 88888
Q ss_pred EeecCC
Q psy2110 484 LWAQNQ 489 (622)
Q Consensus 484 iw~~~~ 489 (622)
.+.++.
T Consensus 158 rf~~~e 163 (256)
T 1zvt_A 158 MFPVSD 163 (256)
T ss_dssp EEEGGG
T ss_pred EEEHHH
Confidence 887754
No 376
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=55.62 E-value=1.3e+02 Score=27.92 Aligned_cols=188 Identities=13% Similarity=0.068 Sum_probs=107.6
Q ss_pred CEEEEEeCCCeEEEEEcCCCc---------eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEE---ECCC------C
Q psy2110 207 TLLAVGCNDGRIVLWDFLTRG---------IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIW---DVLT------G 268 (622)
Q Consensus 207 ~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw---d~~~------~ 268 (622)
..+++.+.+|.|+--.+.+.. ....++ ....+..+........|+.-+..|.++.. ++.. |
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 356677888888876643211 111122 22344444444455566666667765544 3332 2
Q ss_pred cEEEE---EeCCCCeEEEEEeCC--CCeEEEEeeCCCcEEEEEecCC-------ceeecccCCCCceEEEEEeeCCCEEE
Q psy2110 269 ECEQK---YRFPSPILKVQFHPR--NDHMFLVCPMRHAAVLVDTDGD-------HQIVPIDEDSDLSIVASFDRRGQHVV 336 (622)
Q Consensus 269 ~~~~~---~~~~~~v~~~~~~~~--~~~~~~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~ 336 (622)
.++.. +.....|.++...++ ....++..+.+|.++...+..- .....+.. .+.+..+........|+
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 22111 223456666654442 3457888889999998876531 12223333 34444555555667888
Q ss_pred EEecCCeEEEEeCC--CccE-------EEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccc
Q psy2110 337 TGNSKGKVLVLSCP--ALEL-------KASFK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLN 396 (622)
Q Consensus 337 ~~~~dg~i~i~d~~--~~~~-------~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 396 (622)
..+..|.+..+... .-.. +..+. .....|.++...+.+.+|+..+..|.++.-.+.+...
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~ 231 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPV 231 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCB
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccc
Confidence 88999998888766 2111 11111 2245577777766777899999999999988876543
No 377
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=52.64 E-value=1.6e+02 Score=28.04 Aligned_cols=185 Identities=7% Similarity=0.056 Sum_probs=95.9
Q ss_pred CEEEEEeCCCeEEEEEcCCCc-----------eEEEecc-CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC------
Q psy2110 207 TLLAVGCNDGRIVLWDFLTRG-----------IAKIISA-HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG------ 268 (622)
Q Consensus 207 ~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~------ 268 (622)
...+.-..+|.|+.|=..... ....+.. ....+..++.+....+.+.-..||.|+.|-....
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 444555678888888543211 1112221 1234555667666667777788999999965321
Q ss_pred ---cE--EEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc------------eeecccCCCCceEEEEEe
Q psy2110 269 ---EC--EQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH------------QIVPIDEDSDLSIVASFD 329 (622)
Q Consensus 269 ---~~--~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------------~~~~~~~~~~~~~~~~~~ 329 (622)
.. ...+. ....|..++... ...++-..++.++.|-..... +..........+..++..
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 11 11111 122455555432 234445568888888653211 111111122345555544
Q ss_pred eCCCEEEEEecCCeEEEEeCCCc-c----------EEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccc
Q psy2110 330 RRGQHVVTGNSKGKVLVLSCPAL-E----------LKASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLN 396 (622)
Q Consensus 330 ~~~~~l~~~~~dg~i~i~d~~~~-~----------~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 396 (622)
....+.++-..+|.|+.|-.... + ....+.. ....|..++... ...++-..+|.|+.|-....-.
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n~~Gq 296 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTWGKGDYHR 296 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEEEECCGGGT
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEEeCCCCCC
Confidence 33356666778999999964321 1 1111221 223466665543 3444557899999998765433
No 378
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=50.97 E-value=78 Score=32.07 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=41.1
Q ss_pred ceeEEEEcCCCCEEE-EecC----------CCCeEEEEEcCCCceEEEEeccCc-ceeEEEEeecCccccccceeEEEEc
Q psy2110 83 MWKKCCFSGDGEYVC-AGSA----------RQHALYIWEKSVGNLVKILHGTKG-ELLLDVVEFDGALDCISLAVTCAFN 150 (622)
Q Consensus 83 ~~~~~~~sp~~~~l~-~~~~----------~~~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~~s 150 (622)
...-|+|.++|.+.+ +-.. ..+.+..++..+|++...+.+... ++ +.++|+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEp-----------------nGiafS 539 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEV-----------------TGISFS 539 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEE-----------------EEEEEC
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccc-----------------cCCEEC
Confidence 345689999998776 3211 012567777777887776665433 23 699999
Q ss_pred CCCCEEEEee
Q psy2110 151 KRGTLLAVGC 160 (622)
Q Consensus 151 ~d~~~l~s~~ 160 (622)
||++.|+++-
T Consensus 540 PD~ktLfV~v 549 (592)
T 4a9v_A 540 PDQKTLFVGI 549 (592)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999887764
No 379
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=46.28 E-value=2.9e+02 Score=29.14 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=35.8
Q ss_pred CeeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEe-C-------CCCeEEEEEeCCCC-eEEEEe
Q psy2110 238 PVCSISWSRNG-YKIISASTDNNVCIWDVLTGECEQKYR-F-------PSPILKVQFHPRND-HMFLVC 296 (622)
Q Consensus 238 ~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~-~-------~~~v~~~~~~~~~~-~~~~~~ 296 (622)
.|..|+++|.. ..++.+...+.|...+ ..++.-..+. . ...+.+++++|... .+++..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 79999999853 4566666567676665 3344333332 1 13588999999553 344443
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=44.02 E-value=3e+02 Score=28.76 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=30.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Q psy2110 239 VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF 276 (622)
Q Consensus 239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 276 (622)
|.++.+ +..++++-+.|+++|+|++.+++++.....
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 554444 467999999999999999999999888775
No 381
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=42.99 E-value=1.9e+02 Score=26.03 Aligned_cols=195 Identities=9% Similarity=-0.022 Sum_probs=94.5
Q ss_pred cCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcC-CCCEEEEecCCCCeEEEEEcCCCc--
Q psy2110 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG-DGEYVCAGSARQHALYIWEKSVGN-- 115 (622)
Q Consensus 39 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~~~~~~~i~vwd~~~~~-- 115 (622)
....|+..+..|.+..-...........+ + +.....+..+.... +..+++..+.. |.++-..+..-.
T Consensus 34 t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-------l--l~~~e~i~~v~~~~~~~~~~v~~T~~-G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 34 FTEGLFLVSNRGRVYWIAGSQALQGSKVS-------L--KSREEKIVGAFIREKFGNRLLLATKK-GYVKKIPLAEFEYK 103 (276)
T ss_dssp TTSCEEEEETTSEEEEECSHHHHTSEECC-------C--SSTTCCEEEEEEGGGSCSEEEEEETT-SEEEEEEGGGTTTC
T ss_pred CCCEEEEEcCCCeEEEEEhhhCccCcccc-------c--CCCCCEEEEEECCcCCCCEEEEEeCC-CEEEEEEHHHhhhh
Confidence 34556666667766554433322111111 2 33344455443322 46788888865 899888765432
Q ss_pred ----eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccc
Q psy2110 116 ----LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGAL 191 (622)
Q Consensus 116 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 191 (622)
....++.. +.+ ..+........|+..+..|.+..+....-.....-. .....-.+
T Consensus 104 ~~G~~~i~lkeg-D~l-----------------~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a---~Gv~~i~L 162 (276)
T 3no0_A 104 AQGMPIIKLTEG-DEV-----------------VSIASSVDETHILLFTKKGRVARFSVREVPPSTPGA---RGVQGIKL 162 (276)
T ss_dssp STTEECSCCCTT-CCE-----------------EEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTC---CCEECCCC
T ss_pred cCCeEEEecCCC-CEE-----------------EEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCC---CCEEEEcc
Confidence 11111111 122 244444455578888888988888764321110000 00000011
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-------eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEE--
Q psy2110 192 DCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG-------IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCI-- 262 (622)
Q Consensus 192 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i-- 262 (622)
.....|..+...+++..++..+..|.++...+..-. -+..+ ...+.+..+....+...++..+.+|.+..
T Consensus 163 ~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~ 241 (276)
T 3no0_A 163 EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDK 241 (276)
T ss_dssp CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEee
Confidence 111235555444556688888899999988875321 12222 22233443333223334555555665555
Q ss_pred EEC
Q psy2110 263 WDV 265 (622)
Q Consensus 263 wd~ 265 (622)
++.
T Consensus 242 ~~~ 244 (276)
T 3no0_A 242 INQ 244 (276)
T ss_dssp EEG
T ss_pred eCH
Confidence 544
No 382
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=39.26 E-value=3.8e+02 Score=28.52 Aligned_cols=144 Identities=13% Similarity=0.102 Sum_probs=73.8
Q ss_pred ceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceEEEeccC-------CcCeeEEEEcCC-CCEEEEEeCCCc----EEE
Q psy2110 196 LAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGIAKIISAH-------MHPVCSISWSRN-GYKIISASTDNN----VCI 262 (622)
Q Consensus 196 ~v~~~~~s~~g-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~-~~~l~s~~~d~~----i~i 262 (622)
.|.+++++|.. ..++++...+.|...+ +.++.-..+..+ ...+.+|++.|. ...++.+..... -.|
T Consensus 16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v 94 (789)
T 1sqj_A 16 YITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAF 94 (789)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEE
Confidence 58899999863 4566666666665444 233322223222 246999999884 344555443211 233
Q ss_pred E-ECCCCcEEEEEeCC--------C--CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC---ceeeccc---CCCCceEE
Q psy2110 263 W-DVLTGECEQKYRFP--------S--PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD---HQIVPID---EDSDLSIV 325 (622)
Q Consensus 263 w-d~~~~~~~~~~~~~--------~--~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~---~~~~~~~~ 325 (622)
| ....|+.-..+... . .+..++++|.....++++...+.+.. ....+ +.+.... .....+..
T Consensus 95 ~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~~~ 173 (789)
T 1sqj_A 95 YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGYTS 173 (789)
T ss_dssp EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCEEE
T ss_pred EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCeEE
Confidence 3 34455544444321 1 24578888876556666653333321 22222 2222111 11245677
Q ss_pred EEEeeC-CCEEEEEecC
Q psy2110 326 ASFDRR-GQHVVTGNSK 341 (622)
Q Consensus 326 ~~~~~~-~~~l~~~~~d 341 (622)
+.++|. +..++++..+
T Consensus 174 i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 174 VIFDPERNGTIYASATA 190 (789)
T ss_dssp EEECTTSTTCEEEEESS
T ss_pred EEECCCCCCEEEEEEcC
Confidence 888874 4466666554
No 383
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=37.95 E-value=4.7e+02 Score=29.28 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=31.3
Q ss_pred eeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe
Q psy2110 418 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH 455 (622)
Q Consensus 418 ~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~ 455 (622)
+.+++..++..++++-+. |+.++||++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~-D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSL-DYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBT-TCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeC-CCEEEEEECCCCCeEEeec
Confidence 345677788899999997 9999999999999988754
No 384
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.14 E-value=4.5e+02 Score=28.75 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=33.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q psy2110 238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR 275 (622)
Q Consensus 238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 275 (622)
.+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677777888899999999999999999999998875
No 385
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=27.61 E-value=5.8e+02 Score=27.09 Aligned_cols=151 Identities=8% Similarity=0.003 Sum_probs=69.7
Q ss_pred ceeEEEEcCCC-CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCC-CEEEEEeCCCe---
Q psy2110 143 LAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGR--- 217 (622)
Q Consensus 143 ~v~~~~~s~d~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~--- 217 (622)
.|.+|+++|.. ..++.++..+.|...+ ..|+.-..+....... .. ....+.++++.|.. +.++++.....
T Consensus 16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~---~~-~~~~i~~ia~dp~~~~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 16 YITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQ---DM-NIMGTESIALDPNNPDRLYLAQGRYVGDE 90 (789)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGG---GG-GGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcc---cc-cCCceeEEEECCCCCCEEEEEeCccCCCc
Confidence 45799999863 4566666666654443 2232222221111000 00 01247889998843 44444432211
Q ss_pred -EEEEEcCC-CceEEEecc---------CCcCeeEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEEeC-------CC
Q psy2110 218 -IVLWDFLT-RGIAKIISA---------HMHPVCSISWSRN-GYKIISASTDNNVCIWDVLTGECEQKYRF-------PS 278 (622)
Q Consensus 218 -i~iwd~~~-~~~~~~~~~---------~~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~ 278 (622)
-.||.-.. ++.-..+.. ....+..+++.|. ...++.+...+.|. .....|+.-+.+.. ..
T Consensus 91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTT
T ss_pred ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCC
Confidence 34444333 322222211 0113567888874 34555555344332 22233433232221 24
Q ss_pred CeEEEEEeCCCCeEEEEeeCC
Q psy2110 279 PILKVQFHPRNDHMFLVCPMR 299 (622)
Q Consensus 279 ~v~~~~~~~~~~~~~~~~~~~ 299 (622)
.+..+.++|.....++++..+
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESS
T ss_pred CeEEEEECCCCCCEEEEEEcC
Confidence 577888988654444444443
No 386
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=26.77 E-value=2e+02 Score=21.47 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=14.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110 366 KSIEFARRGNCLLVNTGDRLIRVYNHQ 392 (622)
Q Consensus 366 ~~~~~s~~~~~l~~~~~d~~i~i~d~~ 392 (622)
..+.+..+|++++... ++.+ +|.-.
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~ 83 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSN 83 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECS
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECC
Confidence 3567777888665533 3443 67654
No 387
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=20.28 E-value=2.7e+02 Score=20.69 Aligned_cols=25 Identities=4% Similarity=-0.170 Sum_probs=15.9
Q ss_pred eEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110 463 LDVVWHPVRPIIASISSGVVSLWAQN 488 (622)
Q Consensus 463 ~~v~~sp~~~~l~s~~dg~v~iw~~~ 488 (622)
..+.+..+|.+++.-.++.+ +|.-.
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~-iW~S~ 83 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNT-VFVSN 83 (113)
T ss_dssp CEEEECTTSCEEEECTTSCE-EEECS
T ss_pred EEEEEeCCCcEEEECCCCCE-EEECC
Confidence 35677777877766445544 67754
Done!