BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2111
(63 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9WU40|MAN1_MOUSE Inner nuclear membrane protein Man1 OS=Mus musculus GN=Lemd3 PE=1
SV=2
Length = 921
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 37/50 (74%)
Query: 11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
+A++ LHG+WF+ KLVTVKYLR +RYH RFPQA PLKP+N SL
Sbjct: 856 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPANKHMNSL 905
>sp|Q9Y2U8|MAN1_HUMAN Inner nuclear membrane protein Man1 OS=Homo sapiens GN=LEMD3 PE=1
SV=2
Length = 911
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 37/50 (74%)
Query: 11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
+A++ LHG+WF+ KLVTVKYLR +RYH RFPQA PLKPSN S+
Sbjct: 846 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTSNTPLKPSNKHMNSM 895
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 35.8 bits (81), Expect = 0.082, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 16 LHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPS 53
LHG WF K++T Y+ YH FP + L PS
Sbjct: 491 LHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPS 528
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 16 LHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPS 53
LHG WF K++T Y+ YH FP + L PS
Sbjct: 491 LHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPS 528
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 16 LHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPS 53
LHG WF K++T Y+ YH FP + L PS
Sbjct: 485 LHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPS 522
>sp|O46669|SCNAA_CANFA Sodium channel protein type 10 subunit alpha OS=Canis familiaris
GN=SCN10A PE=2 SV=1
Length = 1962
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 4 VGWEKKRRAYRTLHGAWFNS-----KLVTVKYLRYERYH-ERFPQAKALV 47
VGW+ ++ YR + +WF S L++ L +E YH ++ P KAL+
Sbjct: 1144 VGWQVRKTCYRIVEHSWFESFIIFMILLSSGSLAFEDYHLDQKPTVKALL 1193
>sp|Q9Y5Y9|SCNAA_HUMAN Sodium channel protein type 10 subunit alpha OS=Homo sapiens
GN=SCN10A PE=1 SV=2
Length = 1956
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 3 EVGWEKKRRAYRTLHGAWFNS-----KLVTVKYLRYERYH-ERFPQAKALV 47
+VGW+ ++ YR + +WF S L++ L +E Y+ ++ P KAL+
Sbjct: 1136 DVGWQVRKTCYRIVEHSWFESFIIFMILLSSGSLAFEDYYLDQKPTVKALL 1186
>sp|P70031|CCKAR_XENLA Cholecystokinin receptor OS=Xenopus laevis GN=cckar PE=2 SV=1
Length = 453
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 6 WEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQ 61
W+ + AYR + W S ++ + YL Y K + P+K DRR Q
Sbjct: 179 WQTRSHAYRVIAATWVLSSIIMIPYLVYN---------KTVTFPMK---DRRVGHQ 222
>sp|P46151|MTHR1_YEAST Methylenetetrahydrofolate reductase 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MET12 PE=1 SV=2
Length = 657
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 8 KKRRAYRTLHGA--WFNSKLVTVKYLRYERYHERFPQAKALVA 48
+KRR + +L A FN +VT K LRY + P KAL++
Sbjct: 352 RKRRRHSSLDSAKLIFNRAIVTEKGLRYNNENGSMPSKKALIS 394
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,387,492
Number of Sequences: 539616
Number of extensions: 667641
Number of successful extensions: 1216
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1210
Number of HSP's gapped (non-prelim): 9
length of query: 63
length of database: 191,569,459
effective HSP length: 35
effective length of query: 28
effective length of database: 172,682,899
effective search space: 4835121172
effective search space used: 4835121172
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)