Query psy2111
Match_columns 63
No_of_seqs 101 out of 189
Neff 4.5
Searched_HMMs 29240
Date Sat Aug 17 00:33:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s6e_A RNA-binding protein 39; 99.8 1.2E-20 4.1E-25 118.2 5.0 54 2-55 61-114 (114)
2 3ue2_A Poly(U)-binding-splicin 99.2 8E-12 2.8E-16 78.1 3.3 38 2-39 77-114 (118)
3 3dxb_A Thioredoxin N-terminall 99.2 8.9E-12 3E-16 81.8 3.3 38 2-39 181-218 (222)
4 3v4m_A Splicing factor U2AF 65 99.2 1.2E-11 4.2E-16 75.3 3.3 38 2-39 65-102 (105)
5 2pe8_A Splicing factor 45; RRM 99.0 1.3E-10 4.3E-15 70.9 3.1 38 2-39 62-99 (105)
6 1jmt_A Splicing factor U2AF 35 98.7 6E-09 2.1E-13 63.0 1.9 31 2-32 74-104 (104)
7 2dit_A HIV TAT specific factor 98.0 1.6E-06 5.6E-11 51.8 1.9 32 2-33 70-101 (112)
8 1whx_A Hypothetical protein ri 97.6 4.7E-05 1.6E-09 45.5 3.5 37 3-39 53-89 (111)
9 1fje_B Nucleolin RBD12, protei 97.6 7.4E-05 2.5E-09 45.9 3.8 31 2-32 142-172 (175)
10 3mdf_A Peptidyl-prolyl CIS-tra 97.5 7.4E-05 2.5E-09 41.5 3.2 30 2-31 55-84 (85)
11 4fxv_A ELAV-like protein 1; RN 97.5 8.1E-05 2.8E-09 43.9 3.2 30 3-32 68-97 (99)
12 3md3_A Nuclear and cytoplasmic 97.5 5.6E-05 1.9E-09 45.4 2.5 30 2-31 135-164 (166)
13 4a8x_A RNA-binding protein wit 97.5 9.5E-05 3.2E-09 41.2 3.2 31 2-32 53-83 (88)
14 3md1_A Nuclear and cytoplasmic 97.5 0.0001 3.5E-09 40.8 3.2 31 3-33 50-80 (83)
15 2cqb_A Peptidyl-prolyl CIS-tra 97.5 0.00012 4.1E-09 42.1 3.6 32 2-33 60-91 (102)
16 2cqc_A Arginine/serine-rich sp 97.4 0.0001 3.5E-09 41.7 3.1 31 2-32 63-93 (95)
17 2cpi_A CCR4-NOT transcription 97.4 0.0001 3.4E-09 43.7 3.0 31 3-33 70-100 (111)
18 3s8s_A Histone-lysine N-methyl 97.4 0.00013 4.5E-09 43.9 3.5 37 3-39 55-91 (110)
19 2e5h_A Zinc finger CCHC-type a 97.4 0.00013 4.3E-09 41.3 3.2 29 3-31 65-93 (94)
20 1x5s_A Cold-inducible RNA-bind 97.4 0.00017 5.7E-09 41.5 3.6 32 2-33 60-91 (102)
21 1wg1_A KIAA1579 protein, homol 97.4 0.00015 5.2E-09 41.1 3.4 34 2-35 46-79 (88)
22 3bs9_A Nucleolysin TIA-1 isofo 97.4 0.00016 5.4E-09 40.3 3.2 31 2-32 54-84 (87)
23 2qfj_A FBP-interacting repress 97.4 8.3E-05 2.8E-09 46.8 2.2 33 2-34 173-205 (216)
24 2g4b_A Splicing factor U2AF 65 97.3 6E-05 2E-09 45.9 1.5 30 2-31 142-171 (172)
25 2d9p_A Polyadenylate-binding p 97.3 0.0002 6.8E-09 41.3 3.4 32 2-33 61-92 (103)
26 3ulh_A THO complex subunit 4; 97.3 0.00022 7.6E-09 41.3 3.4 31 2-32 76-106 (107)
27 2x1f_A MRNA 3'-END-processing 97.3 0.00021 7.2E-09 40.9 3.2 33 3-35 51-83 (96)
28 1p1t_A Cleavage stimulation fa 97.3 0.00021 7.2E-09 41.1 3.3 34 2-35 56-89 (104)
29 2la6_A RNA-binding protein FUS 97.3 0.00026 9.1E-09 40.7 3.7 30 2-31 69-98 (99)
30 1whw_A Hypothetical protein ri 97.3 0.00023 8E-09 40.7 3.4 32 3-34 57-88 (99)
31 2dgx_A KIAA0430 protein; RRM d 97.3 0.00024 8.3E-09 40.9 3.5 30 3-32 59-88 (96)
32 2dnz_A Probable RNA-binding pr 97.3 0.00023 7.8E-09 40.3 3.2 32 2-33 53-84 (95)
33 2e5j_A Methenyltetrahydrofolat 97.3 0.00028 9.4E-09 40.6 3.6 31 2-32 62-92 (97)
34 1b7f_A Protein (SXL-lethal pro 97.3 0.00015 5.1E-09 43.8 2.6 29 2-30 137-167 (168)
35 2fc8_A NCL protein; structure 97.3 0.00028 9.4E-09 40.6 3.6 31 2-32 60-90 (102)
36 3ex7_B RNA-binding protein 8A; 97.2 0.00027 9.3E-09 42.1 3.4 31 2-32 70-100 (126)
37 1fxl_A Paraneoplastic encephal 97.2 0.00026 9E-09 42.4 3.2 29 2-30 136-166 (167)
38 1nu4_A U1A RNA binding domain; 97.2 0.00029 9.9E-09 40.0 3.2 32 2-33 57-88 (97)
39 2dgo_A Cytotoxic granule-assoc 97.2 0.00025 8.6E-09 41.6 3.0 32 2-33 63-94 (115)
40 2cqh_A IGF-II mRNA-binding pro 97.2 0.00032 1.1E-08 39.8 3.4 31 2-32 50-81 (93)
41 2ek1_A RNA-binding protein 12; 97.2 0.00025 8.6E-09 40.1 2.9 30 3-32 64-93 (95)
42 1qm9_A Polypyrimidine tract-bi 97.2 0.00017 5.8E-09 45.3 2.2 32 2-33 164-196 (198)
43 4f02_A Polyadenylate-binding p 97.2 0.00019 6.6E-09 46.3 2.5 31 2-32 149-179 (213)
44 1x5t_A Splicing factor 3B subu 97.2 0.0003 1E-08 39.9 3.0 31 2-32 54-84 (96)
45 2cq0_A Eukaryotic translation 97.2 0.00029 1E-08 40.6 3.0 32 2-33 63-94 (103)
46 2cq3_A RNA-binding protein 9; 97.2 0.00033 1.1E-08 40.4 3.2 31 3-33 62-92 (103)
47 2e44_A Insulin-like growth fac 97.2 0.00034 1.1E-08 39.8 3.2 32 3-34 61-92 (96)
48 2dgt_A RNA-binding protein 30; 97.2 0.00038 1.3E-08 39.5 3.4 31 2-32 50-80 (92)
49 2fc9_A NCL protein; structure 97.2 0.00039 1.3E-08 39.9 3.5 32 2-33 59-90 (101)
50 3p5t_L Cleavage and polyadenyl 97.2 0.00023 7.9E-09 40.5 2.4 33 2-34 51-83 (90)
51 2cqi_A Nucleolysin TIAR; RNA r 97.2 0.00039 1.3E-08 40.1 3.5 32 2-33 61-92 (103)
52 2cpz_A CUG triplet repeat RNA- 97.1 0.00035 1.2E-08 41.1 3.3 32 2-33 73-104 (115)
53 3lqv_A PRE-mRNA branch site pr 97.1 0.00054 1.9E-08 40.2 4.0 35 3-37 54-88 (115)
54 2cpf_A RNA binding motif prote 97.1 0.00025 8.6E-09 40.5 2.5 32 2-33 56-87 (98)
55 2dnp_A RNA-binding protein 14; 97.1 0.00038 1.3E-08 39.4 3.2 32 2-33 49-80 (90)
56 2cph_A RNA binding motif prote 97.1 0.00041 1.4E-08 40.0 3.4 32 2-33 64-96 (107)
57 2cqp_A RNA-binding protein 12; 97.1 0.00034 1.2E-08 39.9 3.0 31 2-32 63-93 (98)
58 2do4_A Squamous cell carcinoma 97.1 0.00047 1.6E-08 39.5 3.6 31 2-32 64-94 (100)
59 1p27_B RNA-binding protein 8A; 97.1 0.00041 1.4E-08 40.1 3.4 31 2-32 71-101 (106)
60 1x5u_A Splicing factor 3B subu 97.1 0.00032 1.1E-08 40.5 2.9 32 2-33 63-94 (105)
61 2cpe_A RNA-binding protein EWS 97.1 0.00037 1.3E-08 40.8 3.2 32 2-33 71-102 (113)
62 2hvz_A Splicing factor, argini 97.1 0.00046 1.6E-08 39.7 3.5 33 2-34 43-75 (101)
63 3ns6_A Eukaryotic translation 97.1 0.00042 1.4E-08 40.4 3.4 31 3-33 61-92 (100)
64 2cpd_A Apobec-1 stimulating pr 97.1 0.00036 1.2E-08 40.1 3.0 31 3-33 58-88 (99)
65 2ywk_A Putative RNA-binding pr 97.1 0.00027 9.1E-09 40.0 2.4 31 2-32 63-93 (95)
66 2diu_A KIAA0430 protein; struc 97.1 0.0003 1E-08 43.6 2.8 33 2-34 52-84 (96)
67 2cpj_A Non-POU domain-containi 97.1 0.00039 1.3E-08 40.0 3.1 32 2-33 57-88 (99)
68 2wbr_A GW182, gawky, LD47780P; 97.1 0.00036 1.2E-08 42.5 3.0 34 2-35 49-82 (89)
69 2dgu_A Heterogeneous nuclear r 97.1 0.0005 1.7E-08 39.8 3.5 32 2-33 51-82 (103)
70 1x4a_A Splicing factor, argini 97.1 0.00036 1.2E-08 40.7 2.9 32 2-33 67-98 (109)
71 3smz_A Protein raver-1, ribonu 97.1 0.00046 1.6E-08 45.6 3.6 35 2-36 232-266 (284)
72 2xnq_A Nuclear polyadenylated 97.1 0.00047 1.6E-08 40.1 3.2 30 3-32 64-93 (97)
73 1fjc_A Nucleolin RBD2, protein 97.1 0.00049 1.7E-08 39.1 3.2 31 2-32 59-89 (96)
74 2a3j_A U1 small nuclear ribonu 97.1 0.00038 1.3E-08 43.3 2.9 35 3-37 79-113 (127)
75 2dgv_A HnRNP M, heterogeneous 97.1 0.0003 1E-08 39.6 2.2 31 2-32 54-84 (92)
76 2fy1_A RNA-binding motif prote 97.0 0.00049 1.7E-08 41.3 3.2 33 2-34 54-86 (116)
77 4f25_A Polyadenylate-binding p 97.0 0.00049 1.7E-08 41.0 3.2 31 2-32 51-81 (115)
78 2do0_A HnRNP M, heterogeneous 97.0 0.00051 1.7E-08 40.1 3.2 32 2-33 62-93 (114)
79 1u6f_A Tcubp1, RNA-binding pro 97.0 0.00054 1.8E-08 41.4 3.4 32 2-33 90-121 (139)
80 2jvo_A Nucleolar protein 3; nu 97.0 0.00048 1.6E-08 40.9 3.1 32 2-33 71-102 (108)
81 2cpx_A Hypothetical protein FL 97.0 0.00057 1.9E-08 40.0 3.4 32 2-33 73-104 (115)
82 2jrs_A RNA-binding protein 39; 97.0 0.00043 1.5E-08 41.1 2.9 31 2-32 74-104 (108)
83 2kt5_A RNA and export factor-b 97.0 0.00068 2.3E-08 40.4 3.7 32 2-33 82-113 (124)
84 2dnm_A SRP46 splicing factor; 97.0 0.00027 9.3E-09 40.8 1.9 32 2-33 61-92 (103)
85 2dnq_A RNA-binding protein 4B; 97.0 0.00052 1.8E-08 38.8 3.0 32 2-33 48-79 (90)
86 1oo0_B CG8781-PA, drosophila Y 97.0 0.00056 1.9E-08 39.8 3.2 31 2-32 74-104 (110)
87 3pgw_A U1-A; protein-RNA compl 97.0 0.00037 1.3E-08 46.0 2.7 30 2-31 250-280 (282)
88 2err_A Ataxin-2-binding protei 97.0 0.00045 1.6E-08 40.8 2.9 31 2-32 75-105 (109)
89 1x4g_A Nucleolysin TIAR; struc 97.0 0.00048 1.6E-08 40.3 2.9 32 2-33 67-98 (109)
90 2yh0_A Splicing factor U2AF 65 97.0 0.0003 1E-08 43.6 1.8 31 2-32 162-192 (198)
91 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.0 0.00048 1.6E-08 41.2 2.7 28 3-30 112-139 (140)
92 2jvr_A Nucleolar protein 3; RN 96.9 0.0007 2.4E-08 41.3 3.2 30 3-32 74-103 (111)
93 2lkz_A RNA-binding protein 5; 96.9 0.00071 2.4E-08 40.0 3.2 31 2-32 59-93 (95)
94 1why_A Hypothetical protein ri 96.9 0.00091 3.1E-08 38.2 3.4 30 3-32 60-91 (97)
95 2ytc_A PRE-mRNA-splicing facto 96.9 0.00049 1.7E-08 38.2 2.1 30 2-31 54-84 (85)
96 1x5p_A Negative elongation fac 96.9 0.00052 1.8E-08 39.4 2.3 32 3-34 56-87 (97)
97 2adc_A Polypyrimidine tract-bi 96.9 0.00059 2E-08 44.4 2.7 32 2-33 195-227 (229)
98 2kvi_A Nuclear polyadenylated 96.9 0.00058 2E-08 39.2 2.3 31 3-33 52-82 (96)
99 1sjr_A Polypyrimidine tract-bi 96.8 0.00091 3.1E-08 44.2 3.5 58 3-60 91-152 (164)
100 2khc_A Testis-specific RNP-typ 96.8 0.00031 1.1E-08 41.4 1.0 29 3-31 89-117 (118)
101 3egn_A RNA-binding protein 40; 96.8 0.0012 4.1E-08 40.2 3.7 31 2-32 98-128 (143)
102 2dgp_A Bruno-like 4, RNA bindi 96.8 0.0011 3.7E-08 38.2 3.3 31 3-33 62-95 (106)
103 2krb_A Eukaryotic translation 96.8 0.00025 8.5E-09 39.5 0.3 26 3-28 54-80 (81)
104 1fj7_A Nucleolin RBD1, protein 96.8 0.0011 3.7E-08 38.1 3.0 30 2-32 64-93 (101)
105 2ghp_A U4/U6 snRNA-associated 96.8 0.00055 1.9E-08 45.4 1.9 30 2-32 260-289 (292)
106 2dgw_A Probable RNA-binding pr 96.7 0.0012 4.3E-08 37.1 3.2 31 2-33 56-86 (91)
107 2kxn_B Transformer-2 protein h 96.7 0.00065 2.2E-08 41.7 2.1 32 2-33 94-125 (129)
108 2bz2_A Negative elongation fac 96.7 0.0016 5.5E-08 39.6 3.8 33 2-34 79-111 (121)
109 1wf1_A RNA-binding protein RAL 96.7 0.00081 2.8E-08 39.3 2.3 31 2-32 68-98 (110)
110 2db1_A Heterogeneous nuclear r 96.7 0.0015 5.2E-08 39.2 3.5 37 2-39 67-103 (118)
111 1wel_A RNA-binding protein 12; 96.7 0.001 3.5E-08 39.8 2.7 36 2-38 73-108 (124)
112 3tyt_A Heterogeneous nuclear r 96.7 0.0013 4.3E-08 43.1 3.2 30 3-32 49-78 (205)
113 2dnh_A Bruno-like 5, RNA bindi 96.7 0.0016 5.5E-08 37.4 3.2 32 2-33 62-96 (105)
114 2la4_A Nuclear and cytoplasmic 96.6 0.00072 2.5E-08 38.8 1.6 30 2-31 69-98 (101)
115 2div_A TRNA selenocysteine ass 96.6 0.00098 3.4E-08 38.0 2.2 31 2-32 58-92 (99)
116 1x4h_A RNA-binding protein 28; 96.6 0.0011 3.9E-08 38.3 2.5 32 2-33 63-100 (111)
117 2dgs_A DAZ-associated protein 96.6 0.0018 6.1E-08 37.0 3.1 31 2-33 58-88 (99)
118 2i2y_A Fusion protein consists 96.6 0.0017 5.7E-08 39.9 3.1 31 2-32 116-146 (150)
119 2dhg_A TRNA selenocysteine ass 96.6 0.00062 2.1E-08 39.2 1.0 30 3-32 58-88 (104)
120 1h2v_Z 20 kDa nuclear CAP bind 96.6 0.0016 5.5E-08 40.2 3.0 32 2-33 87-118 (156)
121 2lxi_A RNA-binding protein 10; 96.6 0.0017 5.8E-08 37.3 2.9 31 2-32 50-81 (91)
122 2lmi_A GRSF-1, G-rich sequence 96.6 0.0012 4.2E-08 38.7 2.3 37 2-39 61-97 (107)
123 2nlw_A Eukaryotic translation 96.5 0.00076 2.6E-08 39.5 1.3 30 3-32 68-98 (105)
124 3beg_B Splicing factor, argini 96.5 0.00058 2E-08 40.8 0.8 36 3-38 58-93 (115)
125 3zzy_A Polypyrimidine tract-bi 96.5 0.0021 7E-08 40.9 3.4 40 3-42 73-114 (130)
126 2kn4_A Immunoglobulin G-bindin 96.5 0.002 6.7E-08 39.5 3.1 32 2-33 118-149 (158)
127 2cjk_A Nuclear polyadenylated 96.5 0.0018 6E-08 39.1 2.8 29 3-32 136-164 (167)
128 2hgl_A HNRPF protein, heteroge 96.5 0.0028 9.6E-08 39.8 3.8 35 2-37 94-128 (136)
129 3ucg_A Polyadenylate-binding p 96.4 0.0014 4.7E-08 36.5 1.9 29 3-32 55-83 (89)
130 1wi8_A EIF-4B, eukaryotic tran 96.4 0.0024 8.1E-08 36.8 2.9 30 3-33 64-93 (104)
131 2mss_A Protein (musashi1); RNA 96.4 0.0015 5.1E-08 35.5 1.9 28 2-30 47-74 (75)
132 2lea_A Serine/arginine-rich sp 96.4 0.0019 6.7E-08 39.7 2.5 31 2-32 95-125 (135)
133 3n9u_C Cleavage and polyadenyl 96.4 0.0022 7.4E-08 40.7 2.8 33 3-35 106-138 (156)
134 2dng_A Eukaryotic translation 96.4 0.002 6.9E-08 37.1 2.4 29 3-32 63-91 (103)
135 2cqd_A RNA-binding region cont 96.4 0.0014 4.6E-08 38.6 1.7 30 2-32 65-94 (116)
136 2f3j_A RNA and export factor b 96.4 0.002 7E-08 41.5 2.6 33 2-34 135-167 (177)
137 2lcw_A RNA-binding protein FUS 95.4 0.00058 2E-08 40.3 0.0 33 2-34 63-95 (116)
138 1b7f_A Protein (SXL-lethal pro 96.3 0.0031 1.1E-07 37.9 3.3 31 3-33 52-82 (168)
139 2j76_E EIF-4B, EIF4B, eukaryot 96.3 0.0016 5.3E-08 37.7 1.8 29 3-32 68-96 (100)
140 2hzc_A Splicing factor U2AF 65 96.3 0.0021 7.3E-08 35.5 2.2 26 3-29 60-85 (87)
141 1x5o_A RNA binding motif, sing 96.3 0.0037 1.3E-07 36.5 3.3 30 3-32 73-110 (114)
142 3pgw_S U1-70K; protein-RNA com 96.3 0.0023 7.7E-08 46.8 2.8 32 2-33 150-181 (437)
143 2cq2_A Hypothetical protein LO 96.3 0.0026 8.9E-08 39.5 2.7 31 2-32 69-104 (114)
144 1rk8_A CG8781-PA, CG8781-PA pr 96.3 0.0035 1.2E-07 39.3 3.2 31 3-33 121-151 (165)
145 3md3_A Nuclear and cytoplasmic 96.2 0.0038 1.3E-07 37.2 3.2 31 3-33 48-78 (166)
146 2e5i_A Heterogeneous nuclear r 96.2 0.0035 1.2E-07 39.1 3.2 34 3-36 69-104 (124)
147 2ki2_A SS-DNA binding protein 96.2 0.0012 4.2E-08 37.0 0.8 30 3-33 50-79 (90)
148 3r27_A HnRNP L, heterogeneous 96.2 0.0048 1.6E-07 37.5 3.4 30 3-32 64-95 (100)
149 1x4c_A Splicing factor, argini 96.1 0.0033 1.1E-07 36.7 2.5 31 3-33 57-92 (108)
150 1x4e_A RNA binding motif, sing 96.1 0.00088 3E-08 37.2 -0.2 27 3-29 54-80 (85)
151 1fxl_A Paraneoplastic encephal 96.1 0.0055 1.9E-07 36.5 3.3 31 3-33 51-81 (167)
152 2jwn_A Embryonic polyadenylate 96.1 0.0037 1.3E-07 36.9 2.5 30 2-32 84-113 (124)
153 2cq4_A RNA binding motif prote 96.0 0.0031 1E-07 36.9 2.0 32 3-35 74-105 (114)
154 2cpy_A RNA-binding protein 12; 96.0 0.007 2.4E-07 35.7 3.4 38 2-40 63-100 (114)
155 1x4d_A Matrin 3; structural ge 95.9 0.0062 2.1E-07 36.6 3.2 30 3-32 59-90 (102)
156 2dis_A Unnamed protein product 95.9 0.0042 1.4E-07 35.9 2.3 31 3-33 59-91 (109)
157 1wex_A Hypothetical protein (r 95.9 0.0067 2.3E-07 36.2 3.2 31 3-33 58-90 (104)
158 2dnn_A RNA-binding protein 12; 95.9 0.011 3.7E-07 35.7 4.1 36 2-38 62-97 (109)
159 1qm9_A Polypyrimidine tract-bi 95.9 0.006 2E-07 38.1 3.1 33 2-34 47-79 (198)
160 2cq1_A PTB-like protein L; RRM 95.9 0.0069 2.4E-07 36.1 3.2 30 3-32 58-89 (101)
161 3nmr_A Cugbp ELAV-like family 95.9 0.005 1.7E-07 37.1 2.6 30 2-31 142-174 (175)
162 3pgw_A U1-A; protein-RNA compl 95.9 0.0053 1.8E-07 40.4 2.9 33 2-34 58-90 (282)
163 2dha_A FLJ20171 protein; RRM d 95.8 0.0037 1.3E-07 38.6 1.9 42 2-44 74-115 (123)
164 2ad9_A Polypyrimidine tract-bi 95.7 0.011 3.7E-07 36.7 3.7 30 3-32 74-105 (119)
165 2adc_A Polypyrimidine tract-bi 95.6 0.0083 2.8E-07 38.9 3.0 32 2-33 78-109 (229)
166 3smz_A Protein raver-1, ribonu 95.6 0.011 3.9E-07 38.8 3.6 33 2-34 143-175 (284)
167 1wg5_A Heterogeneous nuclear r 95.6 0.007 2.4E-07 35.2 2.2 33 3-36 64-96 (104)
168 1x4f_A Matrin 3; structural ge 95.5 0.014 4.8E-07 35.9 3.5 30 3-32 69-100 (112)
169 1uaw_A Mouse-musashi-1; RNP-ty 95.4 0.007 2.4E-07 32.7 1.8 28 2-30 48-75 (77)
170 2ghp_A U4/U6 snRNA-associated 95.4 0.015 5.2E-07 38.4 3.6 33 2-34 165-197 (292)
171 1fje_B Nucleolin RBD12, protei 95.3 0.013 4.6E-07 35.6 3.1 31 2-33 60-90 (175)
172 2m2b_A RNA-binding protein 10; 95.3 0.0052 1.8E-07 37.1 1.1 30 3-33 74-107 (131)
173 2e5g_A U6 snRNA-specific termi 95.2 0.0023 8E-08 36.4 -0.6 28 3-31 52-79 (94)
174 2qfj_A FBP-interacting repress 95.2 0.013 4.3E-07 36.6 2.7 30 3-32 77-106 (216)
175 2yh0_A Splicing factor U2AF 65 94.9 0.0099 3.4E-07 36.6 1.6 30 2-32 57-86 (198)
176 3q2s_C Cleavage and polyadenyl 94.9 0.0076 2.6E-07 40.2 1.1 33 3-35 119-151 (229)
177 1x4b_A Heterogeneous nuclear r 94.9 0.015 5.1E-07 34.0 2.2 30 2-32 75-104 (116)
178 1sjq_A Polypyrimidine tract-bi 94.8 0.0093 3.2E-07 36.4 1.2 30 3-32 59-90 (105)
179 1s79_A Lupus LA protein; RRM, 94.8 0.014 4.7E-07 34.5 1.9 29 3-32 59-87 (103)
180 1l3k_A Heterogeneous nuclear r 94.7 0.019 6.5E-07 35.3 2.5 32 2-34 152-183 (196)
181 4f02_A Polyadenylate-binding p 94.7 0.027 9.2E-07 36.1 3.2 33 3-35 64-96 (213)
182 3u1l_A PRE-mRNA-splicing facto 94.6 0.017 5.8E-07 39.8 2.2 32 2-33 185-228 (240)
183 1wez_A HnRNP H', FTP-3, hetero 94.5 0.018 6.3E-07 33.7 2.1 30 2-32 61-90 (102)
184 2g4b_A Splicing factor U2AF 65 94.5 0.019 6.4E-07 34.6 2.1 29 2-31 57-85 (172)
185 3sde_A Paraspeckle component 1 94.3 0.04 1.4E-06 36.4 3.6 31 2-32 64-94 (261)
186 2dh8_A DAZ-associated protein 94.2 0.0088 3E-07 34.3 0.1 29 3-32 65-93 (105)
187 3s7r_A Heterogeneous nuclear r 94.0 0.033 1.1E-06 30.7 2.2 27 3-30 60-86 (87)
188 1iqt_A AUF1, heterogeneous nuc 93.1 0.036 1.2E-06 29.6 1.4 27 3-30 48-74 (75)
189 1ufw_A Synaptojanin 2; RNP dom 93.0 0.07 2.4E-06 32.8 2.8 28 3-31 65-92 (95)
190 2rs2_A Musashi-1, RNA-binding 92.7 0.074 2.5E-06 31.1 2.5 29 3-32 74-102 (109)
191 2hgn_A Heterogeneous nuclear r 92.5 0.024 8.4E-07 35.6 0.2 31 2-33 92-122 (139)
192 3sde_A Paraspeckle component 1 92.3 0.11 3.6E-06 34.3 3.1 34 2-35 143-180 (261)
193 2dnl_A Cytoplasmic polyadenyla 92.2 0.11 3.7E-06 30.4 2.7 28 2-31 58-85 (114)
194 2cqg_A TDP-43, TAR DNA-binding 91.9 0.12 4.2E-06 29.3 2.7 30 2-33 63-92 (103)
195 2dnr_A Synaptojanin-1; RRM dom 91.9 0.083 2.8E-06 32.2 2.0 29 3-32 56-84 (91)
196 2hgm_A HNRPF protein, heteroge 91.9 0.036 1.2E-06 34.4 0.4 34 2-36 90-123 (126)
197 3tyt_A Heterogeneous nuclear r 91.6 0.15 5.3E-06 33.0 3.2 28 3-30 172-203 (205)
198 2d9o_A DNAJ (HSP40) homolog, s 91.1 0.12 4E-06 30.8 2.1 29 3-33 61-89 (100)
199 1l3k_A Heterogeneous nuclear r 90.7 0.17 5.8E-06 30.9 2.6 31 3-34 62-92 (196)
200 2i2y_A Fusion protein consists 90.6 0.11 3.8E-06 31.5 1.6 30 3-33 20-50 (150)
201 3nmr_A Cugbp ELAV-like family 88.4 0.58 2E-05 27.8 3.7 31 2-32 53-86 (175)
202 2voo_A Lupus LA protein; RNA-b 86.1 0.45 1.5E-05 30.6 2.4 27 3-30 157-183 (193)
203 3tht_A Alkylated DNA repair pr 85.4 0.62 2.1E-05 33.5 3.0 30 2-31 62-96 (345)
204 2xs2_A Deleted in azoospermia- 82.2 0.2 6.7E-06 28.3 -0.6 28 3-32 57-84 (102)
205 2j8a_A Histone-lysine N-methyl 80.6 1.2 4.1E-05 28.9 2.7 26 9-34 69-96 (136)
206 2l9w_A U4/U6 snRNA-associated- 80.5 1.6 5.5E-05 27.9 3.2 30 3-32 69-98 (117)
207 1wey_A Calcipressin 1; structu 73.5 1.5 5E-05 27.2 1.5 30 3-32 53-82 (104)
208 3pim_A Peptide methionine sulf 69.5 3.1 0.00011 28.1 2.5 34 7-42 132-171 (187)
209 1kpt_A KP4 toxin; killer toxin 54.9 6.6 0.00022 24.4 1.9 22 7-28 20-42 (105)
210 3p3d_A Nucleoporin 53; structu 51.9 10 0.00036 24.3 2.5 37 2-39 68-104 (132)
211 3mah_A Aspartokinase; aspartat 50.6 3.2 0.00011 25.7 -0.1 23 5-27 134-156 (157)
212 1owx_A Lupus LA protein, SS-B, 50.4 12 0.00041 23.1 2.6 32 2-33 61-95 (121)
213 3d2w_A TAR DNA-binding protein 49.8 12 0.0004 20.7 2.3 26 3-32 55-82 (89)
214 1wwh_A Nucleoporin 35, nucleop 47.3 6.1 0.00021 24.8 0.9 37 2-39 65-102 (119)
215 3oc9_A UDP-N-acetylglucosamine 45.6 9.6 0.00033 28.1 1.8 35 4-38 345-387 (405)
216 3bqh_A PILB, peptide methionin 40.9 10 0.00035 25.6 1.2 33 7-40 107-144 (193)
217 3tvi_A Aspartokinase; structur 35.0 8.5 0.00029 28.3 0.1 20 5-24 422-441 (446)
218 3e0m_A Peptide methionine sulf 34.9 13 0.00045 26.9 1.1 33 6-40 104-142 (313)
219 1wf0_A TDP-43, TAR DNA-binding 34.1 16 0.00055 19.6 1.2 26 3-32 49-76 (88)
220 2xdp_A Lysine-specific demethy 31.8 11 0.00038 23.8 0.3 25 16-42 18-42 (123)
221 2htm_A Thiazole biosynthesis p 31.0 20 0.0007 25.3 1.5 37 2-42 72-109 (268)
222 1nwa_A Peptide methionine sulf 28.6 31 0.0011 23.4 2.1 34 7-40 126-165 (203)
223 2g0c_A ATP-dependent RNA helic 27.5 36 0.0012 18.2 1.9 25 7-31 50-74 (76)
224 4gwb_A Peptide methionine sulf 26.8 27 0.00092 23.0 1.5 33 8-40 104-142 (168)
225 2w82_A ORF18, ARDA; DNA mimic, 26.5 8.9 0.00031 24.4 -0.9 8 15-22 18-25 (165)
226 2knz_A Ubiquilin-4; cytoplasm, 26.5 56 0.0019 17.0 2.5 18 1-18 21-38 (53)
227 2bwb_A Ubiquitin-like protein 25.4 63 0.0022 16.5 2.5 18 1-18 17-34 (46)
228 2quy_A Penicillin acylase; aut 25.1 68 0.0023 22.1 3.3 31 2-33 112-161 (335)
229 2dt9_A Aspartokinase; protein- 24.4 19 0.00063 22.3 0.3 20 5-24 141-160 (167)
230 2jy5_A Ubiquilin-1; UBA, alter 24.0 67 0.0023 16.7 2.5 18 1-18 22-39 (52)
231 1p68_A De novo designed protei 23.2 59 0.002 19.7 2.4 19 6-24 9-27 (102)
232 3s1t_A Aspartokinase; ACT doma 23.2 21 0.00073 22.7 0.4 21 5-25 142-162 (181)
233 3bx6_A Alpha-1-acid glycoprote 22.5 38 0.0013 21.9 1.5 38 13-54 18-55 (192)
234 1pm1_X Nitrophorin 2, NP2, pro 21.9 5.7 0.0002 25.2 -2.5 22 1-22 1-25 (180)
235 1gcc_A Ethylene responsive ele 21.5 50 0.0017 17.9 1.7 17 3-19 33-53 (63)
236 2dt7_A Splicing factor 3A subu 20.3 46 0.0016 16.8 1.3 13 33-45 22-34 (38)
237 1t1u_A Choline O-acetyltransfe 20.1 25 0.00085 27.0 0.3 17 8-24 291-316 (639)
No 1
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.81 E-value=1.2e-20 Score=118.18 Aligned_cols=54 Identities=30% Similarity=0.522 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhhCcCcccCCcccccCCc
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSND 55 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~FP~a~~a~~pL~ps~~ 55 (63)
++.+.++|.+|++.||||||+||.|.|+|.+++.|+++||++.++++||+|||.
T Consensus 61 ~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~fp~a~~~~~~l~p~~~ 114 (114)
T 3s6e_A 61 KCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR 114 (114)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHHHCGGGSSCCSCCCCSCC
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHHhCccccccCccCCCCCC
Confidence 578999999999999999999999999999999999999999999999999984
No 2
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.20 E-value=8e-12 Score=78.14 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER 39 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~ 39 (63)
++.++++|.+|++.||||||+||.|.|+|.+.+.|+..
T Consensus 77 ~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~~~ 114 (118)
T 3ue2_A 77 EFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNS 114 (118)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHTT
T ss_pred EECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhcccc
Confidence 47899999999999999999999999999999999864
No 3
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.19 E-value=8.9e-12 Score=81.77 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER 39 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~ 39 (63)
++.+.++|.+|++.||||||+||.|+|+|+++++|+.+
T Consensus 181 ~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~~~ 218 (222)
T 3dxb_A 181 EFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNS 218 (222)
T ss_dssp EESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHHTT
T ss_pred EECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhhhc
Confidence 46899999999999999999999999999999999986
No 4
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.18 E-value=1.2e-11 Score=75.27 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER 39 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~ 39 (63)
++.++++|.+|++.||||||+||.|.|+|.+.+.|+.+
T Consensus 65 ~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~~~ 102 (105)
T 3v4m_A 65 EFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 102 (105)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHTT
T ss_pred EECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHhhc
Confidence 46899999999999999999999999999999999864
No 5
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.03 E-value=1.3e-10 Score=70.90 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER 39 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~ 39 (63)
++.+.++|.+|++.||||||+||.|.++|.+.+.|..+
T Consensus 62 ~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~~~ 99 (105)
T 2pe8_A 62 EFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVL 99 (105)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECCHHHHHTT
T ss_pred EECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhhhh
Confidence 46899999999999999999999999999999999875
No 6
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.68 E-value=6e-09 Score=63.01 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.||||||+||.|.++|.|
T Consensus 74 ~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 74 KFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp EESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred EECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 4679999999999999999999999999987
No 7
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.04 E-value=1.6e-06 Score=51.82 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||++|+||.|.++|...
T Consensus 70 ~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 70 SFRDPEEADYCIQTLDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp ECSCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred EECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 46789999999999999999999999999644
No 8
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.62 E-value=4.7e-05 Score=45.51 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER 39 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~ 39 (63)
+.+.++|.+|++.|||..|+||.|.++|.+...|...
T Consensus 53 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 89 (111)
T 1whx_A 53 FLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAA 89 (111)
T ss_dssp ESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTTCCC
T ss_pred eCCHHHHHHHHHHhCCCEECCeEEEEEECCCCccCCC
Confidence 5789999999999999999999999999998776543
No 9
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.56 E-value=7.4e-05 Score=45.86 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||++++||.|.++|..
T Consensus 142 ~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 142 EFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp ECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 4679999999999999999999999999864
No 10
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.53 E-value=7.4e-05 Score=41.52 Aligned_cols=30 Identities=10% Similarity=-0.037 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL 31 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~ 31 (63)
.+.+.++|.+|++.|||..|+||.|.+++.
T Consensus 55 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 55 EFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 367899999999999999999999999874
No 11
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.49 E-value=8.1e-05 Score=43.87 Aligned_cols=30 Identities=37% Similarity=0.453 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++.|||..++||.|.++|..
T Consensus 68 f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 68 YVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 578999999999999999999999999863
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.48 E-value=5.6e-05 Score=45.39 Aligned_cols=30 Identities=10% Similarity=0.251 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL 31 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~ 31 (63)
.+.+.++|.+|++.|||+.++||.|.++|.
T Consensus 135 ~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 135 SFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp EESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred EeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 367899999999999999999999999985
No 13
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.47 E-value=9.5e-05 Score=41.18 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..++||.|.+++..
T Consensus 53 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 53 EFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 3678999999999999999999999999874
No 14
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.46 E-value=0.0001 Score=40.78 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
+.+.++|.+|++.|||..++||.|.+++...
T Consensus 50 f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 50 FTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 6789999999999999999999999998653
No 15
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.46 E-value=0.00012 Score=42.12 Aligned_cols=32 Identities=9% Similarity=-0.039 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.+++...
T Consensus 60 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 60 EFELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp CCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred EECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 47899999999999999999999999998653
No 16
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.44 E-value=0.0001 Score=41.70 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..|+||.|.++|..
T Consensus 63 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 63 YFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp EESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 3678999999999999999999999999853
No 17
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.0001 Score=43.71 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
+.+.++|.+|++.|||..|+||.|.+++...
T Consensus 70 f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 70 YIRSEDALRAIQCVNNVVVDGRTLKASLGTT 100 (111)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEESCCC
T ss_pred ECcHHHHHHHHHHhCCCEECCEEEEEEeccc
Confidence 5789999999999999999999999998653
No 18
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.41 E-value=0.00013 Score=43.88 Aligned_cols=37 Identities=5% Similarity=-0.009 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER 39 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~ 39 (63)
+.+.++|.+|++.|||..++||.|.+++.+...=+.+
T Consensus 55 f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~~~~~ 91 (110)
T 3s8s_A 55 FTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQQRMK 91 (110)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSTTHHHHH
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCCCcHHHH
Confidence 5789999999999999999999999999876554443
No 19
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=0.00013 Score=41.34 Aligned_cols=29 Identities=3% Similarity=0.108 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYL 31 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~ 31 (63)
+.+.++|.+|++.|||..|+||.|.++|.
T Consensus 65 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 65 FLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp ESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred ECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 57899999999999999999999999984
No 20
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.39 E-value=0.00017 Score=41.52 Aligned_cols=32 Identities=9% Similarity=0.101 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.+++...
T Consensus 60 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 60 TFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91 (102)
T ss_dssp ECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 46899999999999999999999999999753
No 21
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.39 E-value=0.00015 Score=41.10 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER 35 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~ 35 (63)
.+.+.++|.+|++.|||.-|+||.|.+++.+...
T Consensus 46 ~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 46 TLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred EECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 4678999999999999999999999999976543
No 22
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.36 E-value=0.00016 Score=40.27 Aligned_cols=31 Identities=10% Similarity=0.276 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..++||.|.+++..
T Consensus 54 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 54 SFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 3678999999999999999999999999864
No 23
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.36 E-value=8.3e-05 Score=46.78 Aligned_cols=33 Identities=6% Similarity=-0.116 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
.+.+.++|.+|++.|||+.|+||.|.++|....
T Consensus 173 ~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 173 EYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp EESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred EecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 467899999999999999999999999986543
No 24
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.35 E-value=6e-05 Score=45.90 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL 31 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~ 31 (63)
.+.+.++|.+|++.|||.+|+||.|.++|.
T Consensus 142 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 142 EYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 357899999999999999999999999874
No 25
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.31 E-value=0.0002 Score=41.35 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+|+.|.++|...
T Consensus 61 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 61 CFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp EESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 36789999999999999999999999999754
No 26
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.29 E-value=0.00022 Score=41.29 Aligned_cols=31 Identities=6% Similarity=0.110 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..++||.|.++|..
T Consensus 76 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 76 HFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 3678999999999999999999999999864
No 27
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.29 E-value=0.00021 Score=40.90 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER 35 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~ 35 (63)
+.+.++|.+|++.|||..|+||.|.++|.....
T Consensus 51 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 51 FRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence 578999999999999999999999999976543
No 28
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.28 E-value=0.00021 Score=41.08 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER 35 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~ 35 (63)
.+.+.++|.+|++.|||..|+||.|.+++.....
T Consensus 56 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 56 EYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp ECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred EECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 4689999999999999999999999999976443
No 29
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.28 E-value=0.00026 Score=40.66 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL 31 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~ 31 (63)
.+.+.++|.+|++.|||..|+||.|.+++.
T Consensus 69 ~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 69 SFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 367899999999999999999999999874
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.28 E-value=0.00023 Score=40.67 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
+.+.++|.+|++.|||..|+||.|.+++....
T Consensus 57 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 57 FMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp ESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 57899999999999999999999999987543
No 31
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.28 E-value=0.00024 Score=40.95 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++.|||..++||.|.+++..
T Consensus 59 f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 59 MENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 578999999999999999999999999864
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=0.00023 Score=40.34 Aligned_cols=32 Identities=22% Similarity=0.122 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..++||.|.+++...
T Consensus 53 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 53 TFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp EESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred EECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 35789999999999999999999999998643
No 33
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=0.00028 Score=40.56 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..|+||.|.+++..
T Consensus 62 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 62 HYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp ECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred EECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3678999999999999999999999999864
No 34
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.27 E-value=0.00015 Score=43.80 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHhccccCC--ceeEEEE
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNS--KLVTVKY 30 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~G--R~I~Aey 30 (63)
.+.+.++|.+|++.|||+.|+| +.|.++|
T Consensus 137 ~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 137 RYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp EESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred EECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 3578999999999999999988 9999987
No 35
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.26 E-value=0.00028 Score=40.56 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..++||.|.++|..
T Consensus 60 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 60 DFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 3679999999999999999999999999964
No 36
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.22 E-value=0.00027 Score=42.10 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..|+|+.|.++|..
T Consensus 70 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 70 EYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp EESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred EECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 3678999999999999999999999999874
No 37
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.21 E-value=0.00026 Score=42.42 Aligned_cols=29 Identities=21% Similarity=0.150 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCce--eEEEE
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKL--VTVKY 30 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~--I~Aey 30 (63)
.+.+.++|.+|++.|||++|+||. |+++|
T Consensus 136 ~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 136 RFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp EESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred EeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 357899999999999999999986 88776
No 38
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.21 E-value=0.00029 Score=40.03 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.++|...
T Consensus 57 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 57 IFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 88 (97)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred EeCCHHHHHHHHHHhCCCEECCcEEEEEEccC
Confidence 36789999999999999999999999998754
No 39
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.20 E-value=0.00025 Score=41.65 Aligned_cols=32 Identities=9% Similarity=0.249 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.++|...
T Consensus 63 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 63 SFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp EESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 36789999999999999999999999999654
No 40
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.20 E-value=0.00032 Score=39.76 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHhc-cccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHG-AWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhG-RWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.||| ..++||.|.+++..
T Consensus 50 ~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 50 DYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred EECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 47899999999999999 99999999999875
No 41
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.19 E-value=0.00025 Score=40.14 Aligned_cols=30 Identities=13% Similarity=-0.026 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++.|||..|+||.|.+++..
T Consensus 64 f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 64 FESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred ECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 578999999999999999999999998753
No 42
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.18 E-value=0.00017 Score=45.26 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhccccC-CceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFN-SKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~-GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||+.++ ||.|.++|...
T Consensus 164 ~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 164 QMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 468999999999999999999 99999999653
No 43
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.17 E-value=0.00019 Score=46.33 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..++||.|.+++..
T Consensus 149 ~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 149 HFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 4678999999999999999999999999864
No 44
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.17 E-value=0.0003 Score=39.91 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..++||.|.+++..
T Consensus 54 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 54 NFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp EBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 3679999999999999999999999999964
No 45
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.17 E-value=0.00029 Score=40.62 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.++|...
T Consensus 63 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 63 SFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp EESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred EECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 36789999999999999999999999999643
No 46
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.17 E-value=0.00033 Score=40.42 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
+.+.++|.+|++.|||..|+||.|.+++...
T Consensus 62 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 62 FENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 5789999999999999999999999998643
No 47
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.00034 Score=39.79 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
+.+.++|.+|++.|||..++||.|.++|....
T Consensus 61 f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 61 YSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp ESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 57899999999999999999999999997653
No 48
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.16 E-value=0.00038 Score=39.48 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..|.||.|.+++..
T Consensus 50 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 50 HMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp EESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred EECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 3678999999999999999999999999874
No 49
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.16 E-value=0.00039 Score=39.95 Aligned_cols=32 Identities=6% Similarity=0.087 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|.||.|.+++...
T Consensus 59 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 59 EFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp ECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred EECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 36799999999999999999999999999654
No 50
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.15 E-value=0.00023 Score=40.49 Aligned_cols=33 Identities=9% Similarity=-0.088 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
.+.+.++|.+|++.|||.-|+||.|.+++....
T Consensus 51 ~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 51 GVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp CC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred EECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 467999999999999999999999999886543
No 51
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=0.00039 Score=40.09 Aligned_cols=32 Identities=16% Similarity=0.087 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..+.||.|.++|...
T Consensus 61 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 61 EFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp EESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred EECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 36789999999999999999999999999654
No 52
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.14 E-value=0.00035 Score=41.10 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.++|...
T Consensus 73 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 73 SYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 46899999999999999999999999998653
No 53
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.14 E-value=0.00054 Score=40.18 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechhhHH
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYH 37 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~ 37 (63)
+.+.++|.+|++.|||..|+||.|.++|.....-.
T Consensus 54 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 88 (115)
T 3lqv_A 54 YEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF 88 (115)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh
Confidence 57899999999999999999999999998765443
No 54
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.14 E-value=0.00025 Score=40.47 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.+++...
T Consensus 56 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (98)
T 2cpf_A 56 EYKKPEQAQKALKQLQGHTVDGHKLEVRISER 87 (98)
T ss_dssp EESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred EECCHHHHHHHHHHhCCCeeCCeEEEEEEccC
Confidence 36789999999999999999999999998643
No 55
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13 E-value=0.00038 Score=39.37 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.+++...
T Consensus 49 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 49 HMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp EESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 35789999999999999999999999999643
No 56
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.13 E-value=0.00041 Score=40.03 Aligned_cols=32 Identities=9% Similarity=0.288 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHH-hccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTL-HGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~L-hGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.| ||..|+||.|.++|...
T Consensus 64 ~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 64 DFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp EESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred EECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence 357899999999999 99999999999999754
No 57
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.13 E-value=0.00034 Score=39.92 Aligned_cols=31 Identities=13% Similarity=-0.019 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||.-|+||.|.+++..
T Consensus 63 ~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 63 AFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp EESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred EECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 3578999999999999999999999999864
No 58
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.13 E-value=0.00047 Score=39.53 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..|+||.|.+++..
T Consensus 64 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 64 EYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp EESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 3678999999999999999999999999864
No 59
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.12 E-value=0.00041 Score=40.07 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..|+||.|.+++..
T Consensus 71 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 71 EYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp EESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred EECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 3678999999999999999999999999853
No 60
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.12 E-value=0.00032 Score=40.46 Aligned_cols=32 Identities=13% Similarity=-0.025 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.+++...
T Consensus 63 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 63 EFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp EESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred EECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 35789999999999999999999999998643
No 61
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.12 E-value=0.00037 Score=40.80 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|.||.|.+++...
T Consensus 71 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 71 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp EBSSHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred EECCHHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence 36799999999999999999999999998653
No 62
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.12 E-value=0.00046 Score=39.66 Aligned_cols=33 Identities=18% Similarity=-0.007 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
.+.+.++|.+|++.|||..++|+.|.+++....
T Consensus 43 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 43 EFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp ECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred EECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 468999999999999999999999999997654
No 63
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.12 E-value=0.00042 Score=40.39 Aligned_cols=31 Identities=6% Similarity=0.168 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHhccccCC-ceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNS-KLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~G-R~I~Aey~p~ 33 (63)
+.+.++|.+|++.|||..|+| |.|.+++...
T Consensus 61 f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 61 CGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred ECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 578999999999999999999 9999998743
No 64
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.11 E-value=0.00036 Score=40.11 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
+.+.++|.+|++.|||..|+||.|.++|...
T Consensus 58 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 58 FSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp ESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred eCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 5789999999999999999999999998643
No 65
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.10 E-value=0.00027 Score=40.04 Aligned_cols=31 Identities=16% Similarity=-0.027 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..|+||.|.+++..
T Consensus 63 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 63 CFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp EESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 3578999999999999999999999998753
No 66
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.10 E-value=0.0003 Score=43.60 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
.+.++|+|..|++.|||..+.||.|++.|-+..
T Consensus 52 ~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 52 RFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp EESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred EECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 467999999999999999999999999997643
No 67
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.10 E-value=0.00039 Score=39.95 Aligned_cols=32 Identities=13% Similarity=-0.041 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.++|...
T Consensus 57 ~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 57 RLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp ECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred EECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 36789999999999999999999999999643
No 68
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.09 E-value=0.00036 Score=42.53 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER 35 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~ 35 (63)
++.+.++|.+|++.|||.-+.||.|.|++-...+
T Consensus 49 ey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~ 82 (89)
T 2wbr_A 49 KYTTREEANKAQMALNNCVLANTTIFAESPSENE 82 (89)
T ss_dssp EESSHHHHHHHHHHHTTEEETTEEEEEECCCHHH
T ss_pred EECCHHHHHHHHHHhcCCEECCcEEEEEECCHHH
Confidence 4679999999999999999999999999986554
No 69
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.08 E-value=0.0005 Score=39.82 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..++|+.|.+++...
T Consensus 51 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 51 HFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp EESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred EeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 36789999999999999999999999999754
No 70
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.08 E-value=0.00036 Score=40.70 Aligned_cols=32 Identities=13% Similarity=0.004 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.++|...
T Consensus 67 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 67 EFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp EESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 35789999999999999999999999998644
No 71
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.07 E-value=0.00046 Score=45.63 Aligned_cols=35 Identities=11% Similarity=-0.024 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhH
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERY 36 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y 36 (63)
.+.+.++|.+|++.|||++|+||.|.+.|......
T Consensus 232 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 232 EYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred EeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 46899999999999999999999999999876543
No 72
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.06 E-value=0.00047 Score=40.06 Aligned_cols=30 Identities=10% Similarity=-0.189 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++.|||..|+||.|.++|..
T Consensus 64 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 64 FDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp ESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 578999999999999999999999999864
No 73
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.06 E-value=0.00049 Score=39.11 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||.-++||.|.+++..
T Consensus 59 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 59 EFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp EESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 3678999999999999999999999999864
No 74
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.06 E-value=0.00038 Score=43.31 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechhhHH
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYH 37 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~ 37 (63)
+.+.++|..|++.|||..|.||.|.++|.......
T Consensus 79 F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~ 113 (127)
T 2a3j_A 79 FATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQ 113 (127)
T ss_dssp ESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHH
T ss_pred ECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchh
Confidence 57899999999999999999999999997654433
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.05 E-value=0.0003 Score=39.62 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..|+||.|.+++..
T Consensus 54 ~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 54 KFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp EESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred EECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3578999999999999999999999998864
No 76
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.04 E-value=0.00049 Score=41.28 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
.+.+.++|.+|++.|||..|+||.|.+++....
T Consensus 54 ~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 54 TFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp ECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 367999999999999999999999999997643
No 77
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.04 E-value=0.00049 Score=41.02 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.|+|.+|++.|||..++||.|.+++..
T Consensus 51 ~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 51 HFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp EESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3678999999999999999999999999864
No 78
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.00051 Score=40.12 Aligned_cols=32 Identities=13% Similarity=-0.015 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.+++...
T Consensus 62 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 62 TFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred EECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 35789999999999999999999999999643
No 79
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.03 E-value=0.00054 Score=41.42 Aligned_cols=32 Identities=16% Similarity=0.000 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..++||.|.+++...
T Consensus 90 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 90 KFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121 (139)
T ss_dssp EESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 36789999999999999999999999998654
No 80
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.03 E-value=0.00048 Score=40.93 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.++|...
T Consensus 71 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 71 EFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred EECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 36799999999999999999999999998654
No 81
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.00057 Score=39.98 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..++||.|.++|...
T Consensus 73 ~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 73 TFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp ECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 36799999999999999999999999999654
No 82
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.03 E-value=0.00043 Score=41.06 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..|+||.|.+++..
T Consensus 74 ~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 74 TFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp EESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 3678999999999999999999999999864
No 83
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.02 E-value=0.00068 Score=40.44 Aligned_cols=32 Identities=6% Similarity=0.091 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.+++...
T Consensus 82 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 82 HFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp EESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred EECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 35789999999999999999999999999764
No 84
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.02 E-value=0.00027 Score=40.77 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.+++...
T Consensus 61 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 61 RFHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp EESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred EECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 35788999999999999999999999999753
No 85
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.01 E-value=0.00052 Score=38.77 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||.-++||.|.+++...
T Consensus 48 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 48 HIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp EESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred EECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 36789999999999999999999999998643
No 86
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.01 E-value=0.00056 Score=39.85 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..++||.|.++|..
T Consensus 74 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 74 EYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred EECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 3678999999999999999999999999864
No 87
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.01 E-value=0.00037 Score=46.01 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHhccccC-CceeEEEEe
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFN-SKLVTVKYL 31 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~-GR~I~Aey~ 31 (63)
.+.+.++|.+|++.|||+.|+ ||.|.++|.
T Consensus 250 ~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 250 EFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred EeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 468999999999999999999 999999985
No 88
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=0.00045 Score=40.80 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..|+||.|.+++..
T Consensus 75 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 75 TFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp ECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3678999999999999999999999999864
No 89
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.00 E-value=0.00048 Score=40.27 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.++|...
T Consensus 67 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 67 RFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 36789999999999999999999999998644
No 90
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=96.96 E-value=0.0003 Score=43.63 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||.+|+||.|.++|..
T Consensus 162 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 162 EYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp EESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3578899999999999999999999999864
No 91
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.96 E-value=0.00048 Score=41.24 Aligned_cols=28 Identities=11% Similarity=-0.016 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKY 30 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey 30 (63)
+.+.++|.+|++.|||..|+||.|.++|
T Consensus 112 f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 112 FELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp ESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 5789999999999999999999999986
No 92
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.93 E-value=0.0007 Score=41.30 Aligned_cols=30 Identities=20% Similarity=0.058 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++.|||.-|+||.|.+++..
T Consensus 74 F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 74 FPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp ESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 578999999999999999999999999864
No 93
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=96.92 E-value=0.00071 Score=39.98 Aligned_cols=31 Identities=10% Similarity=0.110 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHhcc----ccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGA----WFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGR----WF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||. .++||.|.++|-.
T Consensus 59 ~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 59 QLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp ECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred EECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 367899999999999997 6999999999853
No 94
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.89 E-value=0.00091 Score=38.21 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHhccccC--CceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFN--SKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~--GR~I~Aey~p 32 (63)
+.+.++|.+|++.|||.-++ ||.|.++|..
T Consensus 60 f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 60 YESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp ESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred ECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 57899999999999999999 9999999864
No 95
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.88 E-value=0.00049 Score=38.19 Aligned_cols=30 Identities=13% Similarity=0.013 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHH-hccccCCceeEEEEe
Q psy2111 2 GEVGWEKKRRAYRTL-HGAWFNSKLVTVKYL 31 (63)
Q Consensus 2 kc~s~e~A~~A~~~L-hGRWF~GR~I~Aey~ 31 (63)
.+.+.++|.+|++.| ||..++|+.|.++|.
T Consensus 54 ~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 54 QFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp EESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred EECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 357899999999999 999999999999874
No 96
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.88 E-value=0.00052 Score=39.35 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
+.+.++|.+|++.|||.-|+||.|.++|....
T Consensus 56 f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 56 YEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp ESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 57899999999999999999999999986543
No 97
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.86 E-value=0.00059 Score=44.44 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHhccccC-CceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFN-SKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~-GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||+.++ ||.|.++|...
T Consensus 195 ~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 195 QMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 467899999999999999999 99999999653
No 98
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.00058 Score=39.21 Aligned_cols=31 Identities=10% Similarity=-0.170 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
+.+.++|.+|++.|||..|.||.|.+++...
T Consensus 52 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 52 FDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred ECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 5789999999999999999999999999743
No 99
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.85 E-value=0.00091 Score=44.17 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHhccccCC--ceeEEEEechhhHHhhCcC--cccCCcccccCCcccccc
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNS--KLVTVKYLRYERYHERFPQ--AKALVAPLKPSNDRRYSL 60 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~G--R~I~Aey~p~~~Y~~~FP~--a~~a~~pL~ps~~~~~s~ 60 (63)
+.+.++|..|++.|||+-+.| |.|.++|.......-++-+ +..-+.|-.|+.....++
T Consensus 91 F~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~vk~nn~rsrDyt~p~lp~~~~~~~~ 152 (164)
T 1sjr_A 91 YADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 152 (164)
T ss_dssp ESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCCCCCCSSSEEESSCSCCCCCC-----
T ss_pred ECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcccccccCCCCccccCCCCCCCCCCCCc
Confidence 578999999999999999955 9999999987754444432 233344444554444333
No 100
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.83 E-value=0.00031 Score=41.43 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYL 31 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~ 31 (63)
+.+.++|.+|++.|||..|+||.|.++|-
T Consensus 89 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 89 FDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp EESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 56889999999999999999999999874
No 101
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=96.81 E-value=0.0012 Score=40.23 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..|+||.|.++|..
T Consensus 98 ~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 128 (143)
T 3egn_A 98 GLPNEKAAAKALKEANGYVLFGKPMVVQFAR 128 (143)
T ss_dssp ECSSHHHHHHHHHHHTTBEETTEECEEEECC
T ss_pred EeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 3678999999999999999999999999874
No 102
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.81 E-value=0.0011 Score=38.25 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHhcccc---CCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWF---NSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF---~GR~I~Aey~p~ 33 (63)
+.+.++|.+|++.|||..+ .||.|.++|...
T Consensus 62 f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 62 YCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp ESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred ECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 5789999999999999987 999999998754
No 103
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=96.77 E-value=0.00025 Score=39.53 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHhccccCCc-eeEE
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSK-LVTV 28 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR-~I~A 28 (63)
+.+.++|.+|++.|||..|+|| .|.+
T Consensus 54 f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 54 YASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp ESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred ECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 5789999999999999999999 8864
No 104
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.76 E-value=0.0011 Score=38.05 Aligned_cols=30 Identities=13% Similarity=0.052 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++ |||..++||.|.+++..
T Consensus 64 ~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 64 DFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp EESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred EECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 3578999999999 99999999999999864
No 105
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=96.75 E-value=0.00055 Score=45.40 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|+ .|||++|+||.|.+.|..
T Consensus 260 ~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 260 VFENKDSAERAL-QMNRSLLGNREISVSLAD 289 (292)
T ss_dssp EESSHHHHHHHG-GGTTEEETTEEEEEEECC
T ss_pred EeCCHHHHHHHH-HhcCCEECCcEEEEEEec
Confidence 367899999999 999999999999999864
No 106
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.75 E-value=0.0012 Score=37.12 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++ |||.-++||.|.+++...
T Consensus 56 ~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 56 DFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp ECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred EECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 3679999999999 999999999999998653
No 107
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.74 E-value=0.00065 Score=41.68 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+||.|.++|...
T Consensus 94 ~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 94 YFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp EESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 35789999999999999999999999988643
No 108
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.73 E-value=0.0016 Score=39.60 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
.+.+.++|.+|++.|||..|+||.|.+++....
T Consensus 79 ~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 79 TYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp ECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 367899999999999999999999999997654
No 109
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.73 E-value=0.00081 Score=39.34 Aligned_cols=31 Identities=10% Similarity=0.019 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||.-|+|+.|.+++..
T Consensus 68 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 68 QYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp ECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred EECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3678999999999999999999999999964
No 110
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.71 E-value=0.0015 Score=39.18 Aligned_cols=37 Identities=5% Similarity=-0.104 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER 39 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~ 39 (63)
.+.+.++|.+|++ |||..++||.|.+.+.....+...
T Consensus 67 ~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~~~ 103 (118)
T 2db1_A 67 ELESEDDVKLALK-KDRESMGHRYIEVFKSHRTEMDWV 103 (118)
T ss_dssp EBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHHHHHH
T ss_pred EECCHHHHHHHHh-cCCCeECCeEEEEEECCHHHHHHH
Confidence 3678999999999 999999999999999988876544
No 111
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.70 E-value=0.001 Score=39.84 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHE 38 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~ 38 (63)
.+.+.++|.+|++ |||..++||.|.+++.....+..
T Consensus 73 ~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~~ 108 (124)
T 1wel_A 73 EFRNEADYKAALC-RHKQYMGNRFIQVHPITKKGMLE 108 (124)
T ss_dssp EBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHHHHH
T ss_pred EECCHHHHHHHHH-hCCCeECCcEEEEEECCHHHHHH
Confidence 3678999999999 99999999999999998877654
No 112
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=96.68 E-value=0.0013 Score=43.12 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|..|++.|||..+.||.|.++|..
T Consensus 49 f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 49 MADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred ECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 578999999999999999999999999975
No 113
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.65 E-value=0.0016 Score=37.45 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHhccccCC---ceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNS---KLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~G---R~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||.-+.| |.|.++|...
T Consensus 62 ~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 62 KFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT 96 (105)
T ss_dssp EESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred EeCCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence 3578999999999999999888 9999998754
No 114
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.00072 Score=38.81 Aligned_cols=30 Identities=10% Similarity=-0.040 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL 31 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~ 31 (63)
.+.+.++|.+|++.|||.-|+||.|.+++-
T Consensus 69 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 69 KYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred EECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 367899999999999999999999998774
No 115
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.63 E-value=0.00098 Score=37.99 Aligned_cols=31 Identities=6% Similarity=0.142 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCce----eEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKL----VTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~----I~Aey~p 32 (63)
.+.+.++|.+|++.|||..++||. |.++|..
T Consensus 58 ~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 58 EFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp ECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred EeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence 367999999999999999999999 8888753
No 116
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.63 E-value=0.0011 Score=38.33 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHh------ccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLH------GAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~Lh------GRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|| |..++||.|.+++...
T Consensus 63 ~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 63 QFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT 100 (111)
T ss_dssp EESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCC
T ss_pred EECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCC
Confidence 3578999999999999 9999999999998754
No 117
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.59 E-value=0.0018 Score=36.99 Aligned_cols=31 Identities=19% Similarity=-0.063 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++ |||..|+||.|.+++...
T Consensus 58 ~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 58 TFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp EESSHHHHHHHHH-HCCCBSSSCBCEEEECCC
T ss_pred EECCHHHHHHHHH-hCCCEECCeEEEEEECCC
Confidence 3678999999999 999999999999998653
No 118
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.58 E-value=0.0017 Score=39.86 Aligned_cols=31 Identities=19% Similarity=0.029 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..++||.|.++|..
T Consensus 116 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 116 EFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp EESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred EECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 3578999999999999999999999999864
No 119
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.57 E-value=0.00062 Score=39.17 Aligned_cols=30 Identities=23% Similarity=0.150 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHhccc-cCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAW-FNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRW-F~GR~I~Aey~p 32 (63)
+.+.++|.+|++.|||.. ++||.|.+++..
T Consensus 58 f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 58 FTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp ESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred ECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 678999999999999999 999999998864
No 120
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.57 E-value=0.0016 Score=40.16 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|+|+.|.+++...
T Consensus 87 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 87 EYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp EESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 36789999999999999999999999999863
No 121
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.57 E-value=0.0017 Score=37.34 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHH-hccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTL-HGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~L-hGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.| ||-.++||.|.++|..
T Consensus 50 ~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 50 EFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp ECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred EecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 368999999999988 5668999999999864
No 122
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=96.55 E-value=0.0012 Score=38.68 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER 39 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~ 39 (63)
.+.+.++|.+|++ |||..++||.|.+.+.....+...
T Consensus 61 ~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~~~~~ 97 (107)
T 2lmi_A 61 EMESEQDVQKALE-KHRMYMGQRYVEVYEINNEDVDAL 97 (107)
T ss_dssp EBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHHHHHH
T ss_pred EECCHHHHHHHHH-hCcceeCCeEEEEEECCHHHHHHH
Confidence 3678999999999 999999999999999887665543
No 123
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=96.55 E-value=0.00076 Score=39.46 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHhccccCCc-eeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSK-LVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR-~I~Aey~p 32 (63)
+.+.++|.+|++.|||.-|+|| .|.+++..
T Consensus 68 f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 68 YASPAHAVDAVKNADGYKLDKQHTFRVNLFT 98 (105)
T ss_dssp ECSSSHHHHHHHHCSSEECSTTCEEEEECSC
T ss_pred ECCHHHHHHHHHHhCCcccCCCceEEEEEcc
Confidence 5688999999999999999999 99998864
No 124
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.54 E-value=0.00058 Score=40.79 Aligned_cols=36 Identities=25% Similarity=0.149 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechhhHHh
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHE 38 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~ 38 (63)
+.+.++|.+|++.|||.-|+||.|.+.|+.+..-..
T Consensus 58 f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 58 FVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp ESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred ECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 578999999999999999999997777776665443
No 125
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=96.52 E-value=0.0021 Score=40.86 Aligned_cols=40 Identities=8% Similarity=0.111 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHhccccCC--ceeEEEEechhhHHhhCcC
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNS--KLVTVKYLRYERYHERFPQ 42 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~G--R~I~Aey~p~~~Y~~~FP~ 42 (63)
+.++++|.+|++.|||+=|.| +.|.++|......+-++-+
T Consensus 73 f~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~v~~n~ 114 (130)
T 3zzy_A 73 YADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNN 114 (130)
T ss_dssp ESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCCCCCCS
T ss_pred ECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCceeEEecC
Confidence 478999999999999999988 9999999988876666654
No 126
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.51 E-value=0.002 Score=39.53 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||.-++||.|.+++...
T Consensus 118 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 118 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp EESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 35789999999999999999999999998643
No 127
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.50 E-value=0.0018 Score=39.08 Aligned_cols=29 Identities=10% Similarity=-0.005 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++ |||..|+||.|.++|..
T Consensus 136 f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 136 YDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp ESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred ECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 578999999998 89999999999999864
No 128
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=96.48 E-value=0.0028 Score=39.79 Aligned_cols=35 Identities=6% Similarity=-0.059 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHH
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYH 37 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~ 37 (63)
.+.+.++|.+|++ |||..++||.|.+.+.......
T Consensus 94 ~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~e~~ 128 (136)
T 2hgl_A 94 ELGSEDDVKMALK-KDRESMGHRYIEVFKSHRTEMD 128 (136)
T ss_dssp ECSSHHHHHHHHT-TTEEESSSSEEEEEECCHHHHH
T ss_pred EECCHHHHHHHHh-cCCCEECCEEEEEEECChHHHH
Confidence 3679999999999 9999999999999998766654
No 129
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.44 E-value=0.0014 Score=36.49 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|+ .|||..|+||.|.+++..
T Consensus 55 f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 55 FSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp ESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred ECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 57899999999 999999999999999864
No 130
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.42 E-value=0.0024 Score=36.84 Aligned_cols=30 Identities=13% Similarity=0.043 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
+.+.++|.+|+ .|||.-|+||.|.+++...
T Consensus 64 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 64 FEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp ESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred ECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 57899999999 9999999999999999754
No 131
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=96.41 E-value=0.0015 Score=35.46 Aligned_cols=28 Identities=18% Similarity=0.072 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKY 30 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey 30 (63)
.+.+.++|.+|++ |||.-++||.|.+++
T Consensus 47 ~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 47 TFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp ECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred EECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 3678999999998 999999999999875
No 132
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.38 E-value=0.0019 Score=39.70 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||..++||.|.+++..
T Consensus 95 ~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 95 RFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp ECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3679999999999999999999999999864
No 133
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.38 E-value=0.0022 Score=40.71 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER 35 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~ 35 (63)
+.+.++|.+|++.|||..|+||.|.+++.....
T Consensus 106 f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~~ 138 (156)
T 3n9u_C 106 VASENSVHKLLELLPGKVLNGEKVDVRPATRQN 138 (156)
T ss_dssp ESCHHHHHHHHHHSTTCEETTEECEEEECCHHH
T ss_pred ECCHHHHHHHHHHcCCCEECCeEeEEEEcCCCc
Confidence 578999999999999999999999999986543
No 134
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.37 E-value=0.002 Score=37.11 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|+ .|||..++||.|.+++..
T Consensus 63 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 63 FDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp ESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred ECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 57899999999 999999999999999964
No 135
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.36 E-value=0.0014 Score=38.59 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.||| .|+||.|.+++..
T Consensus 65 ~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 65 TMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp EESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred EECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 36789999999999999 8999999999964
No 136
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.35 E-value=0.002 Score=41.50 Aligned_cols=33 Identities=6% Similarity=0.105 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
.+.+.++|.+|++.|||..|+|+.|.++|....
T Consensus 135 ~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 135 HFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp EESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred EeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 357899999999999999999999999997654
No 137
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=95.35 E-value=0.00058 Score=40.31 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
.+.+.++|.+|++.|||.-|+||.|.+++....
T Consensus 63 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 63 SFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRR 95 (116)
Confidence 467899999999999999999999999987543
No 138
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.35 E-value=0.0031 Score=37.86 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
+.+.++|.+|++.|||..++||.|.+++...
T Consensus 52 f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 52 FTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 5789999999999999999999999998763
No 139
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.33 E-value=0.0016 Score=37.70 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|+ .|||.-|+||.|.+++..
T Consensus 68 f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 68 FEDLDSLLSAL-SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp ECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred ECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence 57899999999 999999999999998864
No 140
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=96.31 E-value=0.0021 Score=35.54 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEE
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVK 29 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Ae 29 (63)
+.+.++|.+|+ .|||.-|+||.|.++
T Consensus 60 f~~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 60 FRSVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp ESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred cCCHHHHHHHH-hcCCCEECCeEEEEe
Confidence 57899999999 999999999999986
No 141
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.29 E-value=0.0037 Score=36.47 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHhcccc--------CCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWF--------NSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF--------~GR~I~Aey~p 32 (63)
+.+.++|.+|++.|||..+ .||.|.++|..
T Consensus 73 f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 73 MESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp ESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred ECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 5789999999999999999 57889988864
No 142
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.29 E-value=0.0023 Score=46.79 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.|.+.++|.+|++.|||.+|+|+.|.|+|...
T Consensus 150 ~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 150 EYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred eeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 46789999999999999999999999999864
No 143
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.28 E-value=0.0026 Score=39.53 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHhcccc-----CCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWF-----NSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF-----~GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||+-+ .|+.|.+.|..
T Consensus 69 ~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 69 RYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp EESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred EECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence 36789999999999999988 79999999864
No 144
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.25 E-value=0.0035 Score=39.26 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
+.+.++|.+|++.|||..|.|+.|.++|...
T Consensus 121 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 121 YETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 5789999999999999999999999998643
No 145
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0038 Score=37.16 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
+.+.++|.+|++.|||..+.|+.|.+++...
T Consensus 48 f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 48 YHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 5789999999999999999999999998743
No 146
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.24 E-value=0.0035 Score=39.13 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHhccccCC--ceeEEEEechhhH
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNS--KLVTVKYLRYERY 36 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~G--R~I~Aey~p~~~Y 36 (63)
+.+.++|..|++.|||.-+.| +.|.++|.....-
T Consensus 69 f~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 69 FESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp ESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred ECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 578999999999999999987 6999999866543
No 147
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.18 E-value=0.0012 Score=36.96 Aligned_cols=30 Identities=13% Similarity=-0.022 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
+.+.+ |.+|+..|||.-++||.|.+++...
T Consensus 50 f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 50 MQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp ECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred ECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 56788 9999999999999999999998654
No 148
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.16 E-value=0.0048 Score=37.52 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHhcc--ccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGA--WFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGR--WF~GR~I~Aey~p 32 (63)
+.+.++|.+|++.|||. .+.||.|.++|..
T Consensus 64 f~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 64 FEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp ESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred ECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 57899999999999998 5899999999975
No 149
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.13 E-value=0.0033 Score=36.74 Aligned_cols=31 Identities=29% Similarity=0.143 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHhccccCC-----ceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNS-----KLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~G-----R~I~Aey~p~ 33 (63)
+.+.++|.+|++.|||.-|+| |.|.+++-..
T Consensus 57 f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 57 FVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp ESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred ECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 578999999999999999999 9999998654
No 150
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.09 E-value=0.00088 Score=37.22 Aligned_cols=27 Identities=7% Similarity=0.016 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEE
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVK 29 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Ae 29 (63)
+.+.++|.+|++.|||.-++||.|.+.
T Consensus 54 f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 54 FDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp ESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred ECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 578999999999999999999998654
No 151
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.06 E-value=0.0055 Score=36.52 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
+.+.++|.+|++.|||.-+.|+.|.+++...
T Consensus 51 f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 51 YIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999998763
No 152
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=96.06 E-value=0.0037 Score=36.93 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|+ .|||..|+||.|.+++..
T Consensus 84 ~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 84 EFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp EESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred EECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 367899999999 899999999999999864
No 153
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.03 E-value=0.0031 Score=36.92 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER 35 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~ 35 (63)
+.+.++|.+|+ .|||.-|+||.|.+++.....
T Consensus 74 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 74 FCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEK 105 (114)
T ss_dssp ESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHH
T ss_pred eCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCc
Confidence 56889999999 999999999999999976544
No 154
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.96 E-value=0.007 Score=35.72 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhhC
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERF 40 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~F 40 (63)
.+.+.++|.+|++. ||..|+||.|.+++......+...
T Consensus 63 ~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~~~~~~ 100 (114)
T 2cpy_A 63 QFKNEDDARKSERL-HRKKLNGREAFVHVVTLEDMREIE 100 (114)
T ss_dssp ECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHHHHHHH
T ss_pred EECCHHHHHHHHHh-CCCccCCeEEEEEECCHHHHHHHH
Confidence 36799999999998 999999999999999887766543
No 155
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.94 E-value=0.0062 Score=36.63 Aligned_cols=30 Identities=17% Similarity=0.009 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHhcc--ccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGA--WFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGR--WF~GR~I~Aey~p 32 (63)
+.+.++|..|++.|||. -+.||.|.++|..
T Consensus 59 f~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 59 MATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp ESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred ECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 57899999999999985 4999999999975
No 156
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.94 E-value=0.0042 Score=35.86 Aligned_cols=31 Identities=13% Similarity=0.019 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHh--ccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLH--GAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~Lh--GRWF~GR~I~Aey~p~ 33 (63)
+.+.++|.+|++.|| |.-++||.|.++|...
T Consensus 59 f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~ 91 (109)
T 2dis_A 59 YESHRAAAMARRKLMPGRIQLWGHQIAVDWAEP 91 (109)
T ss_dssp ESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCS
T ss_pred ecCHHHHHHHHHHhhCCCceecCCeEEEEEcCC
Confidence 578999999999996 5899999999999753
No 157
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.91 E-value=0.0067 Score=36.21 Aligned_cols=31 Identities=3% Similarity=0.013 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHhcc--ccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGA--WFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGR--WF~GR~I~Aey~p~ 33 (63)
+.+.++|.+|++.|||. .++||.|.++|...
T Consensus 58 f~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 58 FENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp ESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 57899999999999875 59999999999753
No 158
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.91 E-value=0.011 Score=35.66 Aligned_cols=36 Identities=8% Similarity=-0.033 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHE 38 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~ 38 (63)
.+.+.++|.+|+ .|||..++||.|.+.......|..
T Consensus 62 ~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~~~~ 97 (109)
T 2dnn_A 62 KFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQWVA 97 (109)
T ss_dssp ECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHHHHH
T ss_pred EECCHHHHHHHH-hcCCCeECCeEEEEEECCccchhh
Confidence 467899999999 799999999999998887776643
No 159
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.90 E-value=0.006 Score=38.09 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
.+.+.++|.+|++.|||..|.||.|.+++....
T Consensus 47 ~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 47 QMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp ECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred EECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 367899999999999999999999999997643
No 160
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.90 E-value=0.0069 Score=36.06 Aligned_cols=30 Identities=7% Similarity=0.015 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHh--ccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLH--GAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~Lh--GRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++.|| |..+.||.|.++|..
T Consensus 58 f~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 58 LATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp ESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred ECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 578999999999886 678999999999975
No 161
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.90 E-value=0.005 Score=37.09 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHhccccC---CceeEEEEe
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFN---SKLVTVKYL 31 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~---GR~I~Aey~ 31 (63)
.+.+.++|.+|++.|||+-+. ||.|.++|-
T Consensus 142 ~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 142 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 467899999999999997554 499999874
No 162
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=95.89 E-value=0.0053 Score=40.40 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
.+.+.++|.+|++.|||..+.||.|.++|....
T Consensus 58 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 90 (282)
T 3pgw_A 58 IFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 90 (282)
T ss_pred EECCHHHHHHHHHHhcCCeeCCcEEEEEEeccC
Confidence 467899999999999999999999999998543
No 163
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.84 E-value=0.0037 Score=38.65 Aligned_cols=42 Identities=10% Similarity=0.007 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhhCcCcc
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAK 44 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~FP~a~ 44 (63)
.+.+.++|.+|++. ||..++||.|.+..............+.
T Consensus 74 ~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e~~~~~~~~~ 115 (123)
T 2dha_A 74 LFACEEYAQNALRK-HKDLLGKRYIELFRSTAAEVQQVLNRFS 115 (123)
T ss_dssp CCSSHHHHHHHHTT-TTEESSSCEECCEEECHHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHh-CCCeeCCeEEEEEECCHHHHHHHHHhcc
Confidence 47899999999997 9999999999999988887777654433
No 164
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.73 E-value=0.011 Score=36.71 Aligned_cols=30 Identities=3% Similarity=-0.012 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHhc--cccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHG--AWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhG--RWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++.|+| ..++||.|.++|..
T Consensus 74 F~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 74 MNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred ECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 6789999999999985 69999999999964
No 165
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=95.62 E-value=0.0083 Score=38.93 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++.|||..|.||.|.+++...
T Consensus 78 ~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 78 QMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp EESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred EECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 35789999999999999999999999998754
No 166
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.57 E-value=0.011 Score=38.83 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
.+.+.++|.+|++.|||..++||.|.+++....
T Consensus 143 ~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 143 EYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 357899999999999999999999999998654
No 167
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.56 E-value=0.007 Score=35.19 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechhhH
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERY 36 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y 36 (63)
+.+.++|.+|++. ||..++||.|.+.+.....+
T Consensus 64 F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~ 96 (104)
T 1wg5_A 64 FASQEIAEKALKK-HKERIGHRYIEIFKSSRAEV 96 (104)
T ss_dssp ESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTS
T ss_pred ECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHH
Confidence 5789999999998 99999999999988765544
No 168
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.48 E-value=0.014 Score=35.87 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHhc--cccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHG--AWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhG--RWF~GR~I~Aey~p 32 (63)
+.+.++|..|++.||| ..|+||.|.++|..
T Consensus 69 f~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 69 METREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp CSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 6789999999999975 57999999999964
No 169
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.40 E-value=0.007 Score=32.66 Aligned_cols=28 Identities=11% Similarity=-0.019 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKY 30 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey 30 (63)
.+.+.++|.+|++.|| ..++||.|.+++
T Consensus 48 ~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 48 TFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred EEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 4678999999999999 999999999886
No 170
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=95.35 E-value=0.015 Score=38.36 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
.+.+.++|.+|++.|||..++|+.|.+++....
T Consensus 165 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 197 (292)
T 2ghp_A 165 DVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL 197 (292)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 367899999999999999999999999987543
No 171
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.33 E-value=0.013 Score=35.57 Aligned_cols=31 Identities=13% Similarity=0.003 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|+ .|||..+.||.|.+++...
T Consensus 60 ~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 60 DFESAEDLEKAL-ELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp EESSHHHHHHHH-HGGGEEETTEEEEEECCCC
T ss_pred EECCHHHHHHHH-hcCCCEeCCeEEEEecCCC
Confidence 367899999999 5999999999999998753
No 172
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.28 E-value=0.0052 Score=37.10 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHhcc----ccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGA----WFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGR----WF~GR~I~Aey~p~ 33 (63)
+.+. +|.+|++.|||. .++||.|.++|...
T Consensus 74 f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 74 LSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp CCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred ECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 5678 999999999999 99999999998754
No 173
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.23 E-value=0.0023 Score=36.36 Aligned_cols=28 Identities=4% Similarity=-0.115 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYL 31 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~ 31 (63)
+.+.++|.+|+. |||.-|+||.|.+++-
T Consensus 52 f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 52 MGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp ESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred ECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 578999999999 9999999999999744
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.22 E-value=0.013 Score=36.60 Aligned_cols=30 Identities=10% Similarity=-0.006 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++.|||..++||.|.+++..
T Consensus 77 f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 77 YEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp ESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred eCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 578999999999999999999999997643
No 175
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=94.91 E-value=0.0099 Score=36.62 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|+ .|||..|.||.|.+++..
T Consensus 57 ~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~ 86 (198)
T 2yh0_A 57 EFRSVDETTQAM-AFDGIIFQGQSLKIRRPH 86 (198)
T ss_dssp EESCSHHHHHHG-GGTTEEETTEEEEEECCC
T ss_pred EeCCHHHHHHHH-HhcCCEEcCceEEEeCCC
Confidence 367899999999 899999999999998754
No 176
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=94.91 E-value=0.0076 Score=40.23 Aligned_cols=33 Identities=6% Similarity=-0.102 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER 35 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~ 35 (63)
+.+.++|.+|++.|||.-|+||.|.+++.....
T Consensus 119 f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~~ 151 (229)
T 3q2s_C 119 VGSEASSKKLMDLLPKRELHGQNPVVTPVNKQF 151 (229)
T ss_dssp ESCTTHHHHHHTTSTTSCBTTBCCEEEECCHHH
T ss_pred ECCHHHHHHHHHHcCCCeECCEEeEEEECCCCc
Confidence 578899999999999999999999999976554
No 177
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.87 E-value=0.015 Score=33.99 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|++. ||..|+||.|.+++..
T Consensus 75 ~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 75 TFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp ECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred EeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 36789999999999 9999999999999864
No 178
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.80 E-value=0.0093 Score=36.43 Aligned_cols=30 Identities=3% Similarity=-0.028 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHh--ccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLH--GAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~Lh--GRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++.|+ |..++||.|.++|..
T Consensus 59 F~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 59 MNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp ESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 578999999999997 489999999998864
No 179
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.78 E-value=0.014 Score=34.51 Aligned_cols=29 Identities=7% Similarity=0.053 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|+. +||.-|+||.|.+++-.
T Consensus 59 F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 59 FDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp ESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred ECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 578999999999 99999999999998543
No 180
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=94.68 E-value=0.019 Score=35.26 Aligned_cols=32 Identities=6% Similarity=-0.157 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
.+.+.++|.+|+.. ||..|+||.|.+.+....
T Consensus 152 ~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 152 TFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp EESSHHHHHHHHHC-SCCEETTEECEEEECC--
T ss_pred EECCHHHHHHHHHh-CCcEECCEEEEEEecCCh
Confidence 36789999999987 899999999999986543
No 181
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=94.66 E-value=0.027 Score=36.10 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechhh
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYER 35 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~ 35 (63)
+.+.++|.+|++.|||..+.||.|.+.+.....
T Consensus 64 F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 64 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred eCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence 578999999999999999999999998875443
No 182
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=94.58 E-value=0.017 Score=39.84 Aligned_cols=32 Identities=9% Similarity=-0.087 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhcccc------------CCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWF------------NSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF------------~GR~I~Aey~p~ 33 (63)
.+.+.++|..|+++|||..+ +||.|.+++-..
T Consensus 185 ~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 185 KFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp EESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred EeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 35789999999999999999 999999999753
No 183
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.54 E-value=0.018 Score=33.66 Aligned_cols=30 Identities=13% Similarity=-0.033 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|+ .+||..++||.|.+....
T Consensus 61 ~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 61 EFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp ECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred EECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 367899999999 479999999999997654
No 184
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.51 E-value=0.019 Score=34.61 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL 31 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~ 31 (63)
.+.+.++|.+|+ .|||..++||.|.+++.
T Consensus 57 ~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~ 85 (172)
T 2g4b_A 57 EFRSVDETTQAM-AFDGIIFQGQSLKIRRP 85 (172)
T ss_dssp EESSHHHHHHHG-GGTTCEETTEECEEECC
T ss_pred EeCCHHHHHHHH-HhCCcEecCceeeecCC
Confidence 367899999999 99999999999999864
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=94.34 E-value=0.04 Score=36.39 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
.+.+.++|.+|+..|||.-+.||.|.+.+..
T Consensus 64 ~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 64 RLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 4689999999999999999999999999864
No 186
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.23 E-value=0.0088 Score=34.34 Aligned_cols=29 Identities=3% Similarity=-0.176 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++. ||..|+||.|.+++..
T Consensus 65 f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 65 FKDPNCVGTVLAS-RPHTLDGRNIDPKPCT 93 (105)
T ss_dssp ESSTTHHHHHHHH-CSEEETTEEEBCCCSC
T ss_pred ECCHHHHHHHHHh-CCCeECCEEEEEEEcc
Confidence 5788999999999 9999999999998754
No 187
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=93.96 E-value=0.033 Score=30.71 Aligned_cols=27 Identities=4% Similarity=0.016 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKY 30 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey 30 (63)
+.+.++|.+|++. +|.-++||.|.+++
T Consensus 60 f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 60 FKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp ESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred ECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 5789999999965 77789999999875
No 188
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=93.10 E-value=0.036 Score=29.65 Aligned_cols=27 Identities=7% Similarity=-0.130 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKY 30 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey 30 (63)
+.+.++|.+|++. ||.-++||.|.+++
T Consensus 48 f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 48 FKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred ECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 5789999999995 99999999998875
No 189
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.05 E-value=0.07 Score=32.84 Aligned_cols=28 Identities=7% Similarity=-0.018 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYL 31 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~ 31 (63)
+.+.++|.+|++ |||-=++||.|++++-
T Consensus 65 F~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 65 FADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp CSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred EcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 568899999999 9999999999999863
No 190
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=92.71 E-value=0.074 Score=31.10 Aligned_cols=29 Identities=10% Similarity=-0.056 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++.++ .-|+||.|.+++..
T Consensus 74 f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 74 FMDQAGVDKVLAQSR-HELDSKTIDPKVAF 102 (109)
T ss_dssp ESSHHHHHHHHHSSC-EEETTEEEEEEECC
T ss_pred ECCHHHHHHHHHHCC-CcCCCEEEEEEEcc
Confidence 578999999999974 99999999999864
No 191
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=92.52 E-value=0.024 Score=35.59 Aligned_cols=31 Identities=10% Similarity=-0.037 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|+ .|||..++||.|.+.....
T Consensus 92 ~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 92 EFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp ECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred EeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 367899999999 8999999999999877654
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=92.34 E-value=0.11 Score=34.32 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHH-hccccC---CceeEEEEechhh
Q psy2111 2 GEVGWEKKRRAYRTL-HGAWFN---SKLVTVKYLRYER 35 (63)
Q Consensus 2 kc~s~e~A~~A~~~L-hGRWF~---GR~I~Aey~p~~~ 35 (63)
.+.+.++|.+|++.| +|.++. ||.|.+++.....
T Consensus 143 ~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 143 EFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred EeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 367899999999999 556665 9999999987543
No 193
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.18 E-value=0.11 Score=30.44 Aligned_cols=28 Identities=7% Similarity=-0.275 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEe
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYL 31 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~ 31 (63)
.+.+.++|.+|++.||+ ++|+.|.+...
T Consensus 58 ~f~~~~~a~~Ai~~~~~--~~G~~~~~~~~ 85 (114)
T 2dnl_A 58 LFQEESSVQALIDACLE--EDGKLYLCVSS 85 (114)
T ss_dssp CCSSHHHHHHHHHHSEE--ETTEEEEEECC
T ss_pred EECCHHHHHHHHHhhhh--cCCcEEEeccC
Confidence 46799999999999976 77877776543
No 194
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.94 E-value=0.12 Score=29.25 Aligned_cols=30 Identities=7% Similarity=0.083 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
.+.+.++|.+|++ +|..++||.|.+++...
T Consensus 63 ~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 63 RFTEYETQVKVMS--QRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp EESSHHHHHHHHH--SCEEETTEEEEEECCCT
T ss_pred EECCHHHHHHHHH--cCCeeCCeEEEEEecCC
Confidence 3578999999999 46799999999998654
No 195
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.93 E-value=0.083 Score=32.17 Aligned_cols=29 Identities=10% Similarity=0.064 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++ |||-=++||.|++++-.
T Consensus 56 F~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 56 FLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp ESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred ECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 468899999999 99999999999998754
No 196
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=91.91 E-value=0.036 Score=34.44 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhH
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERY 36 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y 36 (63)
.+.+.++|.+|++. ||..++||.|.+........
T Consensus 90 ~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~~e~ 123 (126)
T 2hgm_A 90 QFASQELAEKALGK-HKERIGHRYIEVFKSSQEEV 123 (126)
T ss_dssp EESSTTHHHHHHTT-TTCCBTTBCCCCEEECHHHH
T ss_pred EECCHHHHHHHHHH-CCCEECCEEEEEEECCHHHh
Confidence 35789999999985 88999999999988765543
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=91.59 E-value=0.15 Score=33.03 Aligned_cols=28 Identities=11% Similarity=-0.101 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHhccccCCc----eeEEEE
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSK----LVTVKY 30 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR----~I~Aey 30 (63)
+.+.++|.+|+..|||.-++|+ ++++++
T Consensus 172 f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 172 WDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp CSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred eCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 6789999999999999999998 455544
No 198
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.07 E-value=0.12 Score=30.79 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~ 33 (63)
+.+.++|..|++.++| +.||.|.++|...
T Consensus 61 F~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 61 FATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp ESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred ECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 5689999999999888 7899999998643
No 199
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=90.74 E-value=0.17 Score=30.89 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEechh
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~ 34 (63)
+.+.++|.+|++. +|..++||.|.+++....
T Consensus 62 f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 62 YATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp ESSHHHHHHHHHT-CSCEETTEECEEEECCC-
T ss_pred eCCHHHHHHHHhc-CCCEECCEEeeeecccCc
Confidence 5789999999987 999999999999987543
No 200
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.58 E-value=0.11 Score=31.53 Aligned_cols=30 Identities=7% Similarity=0.008 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHH-hccccCCceeEEEEech
Q psy2111 3 EVGWEKKRRAYRTL-HGAWFNSKLVTVKYLRY 33 (63)
Q Consensus 3 c~s~e~A~~A~~~L-hGRWF~GR~I~Aey~p~ 33 (63)
+.+.++|.+|++.| ||..++| .|.+.+...
T Consensus 20 ~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 20 AVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 67899999999999 9999999 998886543
No 201
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=88.36 E-value=0.58 Score=27.76 Aligned_cols=31 Identities=13% Similarity=-0.039 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHhccccC---CceeEEEEec
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFN---SKLVTVKYLR 32 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~---GR~I~Aey~p 32 (63)
.+.+.++|.+|++.|||.-+. ++.|.+.+..
T Consensus 53 ~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 53 TFYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp EESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred EECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence 367899999999999997654 5666666544
No 202
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=86.15 E-value=0.45 Score=30.64 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEE
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKY 30 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey 30 (63)
+.+.++|.+|+..+++ -|+||.|.+..
T Consensus 157 F~~~e~A~~A~~~~~~-~~~Gr~l~V~~ 183 (193)
T 2voo_A 157 FDSIESAKKFVETPGQ-KYKETDLLILF 183 (193)
T ss_dssp ESSHHHHHHHHHCTTC-EETTEECEEEE
T ss_pred ECCHHHHHHHHHhCCC-eECCEEEEEEE
Confidence 5789999999988876 89999999874
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=85.36 E-value=0.62 Score=33.51 Aligned_cols=30 Identities=23% Similarity=0.301 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHhcccc---CCc--eeEEEEe
Q psy2111 2 GEVGWEKKRRAYRTLHGAWF---NSK--LVTVKYL 31 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF---~GR--~I~Aey~ 31 (63)
.|.+.|+|.+|++.|||.-+ .|+ .|...|+
T Consensus 62 ~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 62 RYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp EESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEC
T ss_pred EECCHHHHHHHHHHhCCCccccccCCceEEEEEEe
Confidence 36899999999999999987 355 5777777
No 204
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=82.24 E-value=0.2 Score=28.32 Aligned_cols=28 Identities=7% Similarity=-0.118 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.+.++|.+|++ ||.-++|+.|.+.+.-
T Consensus 57 f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 57 FYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp ESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred ECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 467889999999 9999999999976654
No 205
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=80.61 E-value=1.2 Score=28.90 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=22.9
Q ss_pred HHHHHH--HHhccccCCceeEEEEechh
Q psy2111 9 KRRAYR--TLHGAWFNSKLVTVKYLRYE 34 (63)
Q Consensus 9 A~~A~~--~LhGRWF~GR~I~Aey~p~~ 34 (63)
|.+|+. .|+|.-++||.|.+++=+..
T Consensus 69 A~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 69 AFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp HHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred HHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 889999 89999999999999976543
No 206
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=80.55 E-value=1.6 Score=27.86 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.|..+|++|.=+|||-=|+||.|.+--+.
T Consensus 69 f~d~~~AgKasLaL~G~ef~gr~Lr~gTv~ 98 (117)
T 2l9w_A 69 FRDSKFAAKMLMILNGSQFQGKVIRSGTIN 98 (117)
T ss_dssp CSCHHHHHHHHHHHSSEEETTEEEEEECHH
T ss_pred EccchhhHHHHhhcCCeeecCeEEEecCHH
Confidence 678999999999999999999999987554
No 207
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.49 E-value=1.5 Score=27.23 Aligned_cols=30 Identities=17% Similarity=0.019 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~GR~I~Aey~p 32 (63)
+.++|+|.+|-..|||.=|.|+.|.+-|-.
T Consensus 53 F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 53 FSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred eCChHHHHHHHHHhccceecCceeEEEecC
Confidence 578999999999999999999999988766
No 208
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=69.52 E-value=3.1 Score=28.06 Aligned_cols=34 Identities=12% Similarity=0.390 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhccccCCceeEE------EEechhhHHhhCcC
Q psy2111 7 EKKRRAYRTLHGAWFNSKLVTV------KYLRYERYHERFPQ 42 (63)
Q Consensus 7 e~A~~A~~~LhGRWF~GR~I~A------ey~p~~~Y~~~FP~ 42 (63)
+.|.+.++.|..+| ++.|.. .|.|-++|||.|-+
T Consensus 132 ~~A~~~~~~l~~~~--~~~IvTeI~p~~~Fy~AE~yHQ~Yl~ 171 (187)
T 3pim_A 132 KELAKIKEEWQPKW--GNKIATVIEPIKNFYDAEEYHQLYLD 171 (187)
T ss_dssp HHHHHHHHHHGGGG--TTCBCCEEEEEEEEEEHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHh--CCCcEEEEeeCCCeeecHHHHHHHHH
Confidence 45777788888886 444443 47888999998754
No 209
>1kpt_A KP4 toxin; killer toxin, virally encoded, single subunit, alpha/beta family, LEFT-handed crossover, fungal TOXI; 1.75A {Ustilago maydis} SCOP: d.70.1.1
Probab=54.94 E-value=6.6 Score=24.39 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhc-cccCCceeEE
Q psy2111 7 EKKRRAYRTLHG-AWFNSKLVTV 28 (63)
Q Consensus 7 e~A~~A~~~LhG-RWF~GR~I~A 28 (63)
++-..+++.+++ |||+|..|..
T Consensus 20 ~~l~~~i~~i~~n~~y~G~~iAC 42 (105)
T 1kpt_A 20 VRIRDQACGNQGQTWCPGERRAK 42 (105)
T ss_dssp HHHHHHHHHCTTSEECBTCCCEE
T ss_pred HHHHHHHhcCCCCceECCceeEE
Confidence 455667788888 9999999944
No 210
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=51.87 E-value=10 Score=24.26 Aligned_cols=37 Identities=19% Similarity=0.010 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHhccccCCceeEEEEechhhHHhh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHER 39 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~GR~I~Aey~p~~~Y~~~ 39 (63)
+++|..+|.+|++ -||+=|+|-+|-++......-.++
T Consensus 68 tYds~~~A~rAL~-~NG~ii~G~mIGV~Py~~~~ve~l 104 (132)
T 3p3d_A 68 TYDNPASAVDALL-ENGAVFNGVLLGVIPYTKDAVERL 104 (132)
T ss_dssp EBSSHHHHHHHHT-TTTCEETTEECEEEECCHHHHHHH
T ss_pred EcCCHHHHHHHHH-hCCeEeCcEEEEEEECCHHHHHHH
Confidence 5788999998886 499999999999988766554443
No 211
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=50.55 E-value=3.2 Score=25.70 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHhccccCCceeE
Q psy2111 5 GWEKKRRAYRTLHGAWFNSKLVT 27 (63)
Q Consensus 5 s~e~A~~A~~~LhGRWF~GR~I~ 27 (63)
+.+++.+|+++||..+|.++...
T Consensus 134 ~~~d~~~a~~~Lh~~f~~~~~~~ 156 (157)
T 3mah_A 134 KAEDKKKALIALSNKLFNSRATK 156 (157)
T ss_dssp EGGGHHHHHHHHHHHHHC-----
T ss_pred cHHHHHHHHHHHHHHHhccCCCC
Confidence 35788999999999999887654
No 212
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.36 E-value=12 Score=23.12 Aligned_cols=32 Identities=13% Similarity=-0.118 Sum_probs=26.9
Q ss_pred CCCC-HHHHHHHHHHHh--ccccCCceeEEEEech
Q psy2111 2 GEVG-WEKKRRAYRTLH--GAWFNSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s-~e~A~~A~~~Lh--GRWF~GR~I~Aey~p~ 33 (63)
.|.+ +++|..|++.|+ |.=+.|..++++.+.-
T Consensus 61 rf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 61 LFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp EESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred EECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 4678 789999999995 7788899999998763
No 213
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=49.81 E-value=12 Score=20.69 Aligned_cols=26 Identities=12% Similarity=-0.038 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHhccccC--CceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAWFN--SKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRWF~--GR~I~Aey~p 32 (63)
+.+.++|. .|+|.-+. ||.|.+++-.
T Consensus 55 F~~~~~A~----~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 55 FADDKVAQ----SLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ESCHHHHH----HHTTCEEEETTEEEEEEECC
T ss_pred ECCHHHHH----HHcCCCcccCCEEEEEEEcC
Confidence 46777776 47787654 9999988754
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=47.32 E-value=6.1 Score=24.80 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHhccccCC-ceeEEEEechhhHHhh
Q psy2111 2 GEVGWEKKRRAYRTLHGAWFNS-KLVTVKYLRYERYHER 39 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF~G-R~I~Aey~p~~~Y~~~ 39 (63)
++.+..+|.+|++. ||+-++| =+|-+.-.....-.+.
T Consensus 65 ~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d~~vi~~ 102 (119)
T 1wwh_A 65 RYQSKLQARKALSK-DGRIFGESIMIGVKPCIDKNVMEN 102 (119)
T ss_dssp EESSHHHHHHHHTT-TTCEETTTEECEEEECCCHHHHC-
T ss_pred EeCCHHHHHHHHHh-CCeEecCCEEEEEEECCCHHHHHH
Confidence 57889999999987 9999985 6677776654444433
No 215
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=45.65 E-value=9.6 Score=28.08 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHhcccc--CCce------eEEEEechhhHHh
Q psy2111 4 VGWEKKRRAYRTLHGAWF--NSKL------VTVKYLRYERYHE 38 (63)
Q Consensus 4 ~s~e~A~~A~~~LhGRWF--~GR~------I~Aey~p~~~Y~~ 38 (63)
+|++.|..++-.||-||. +|-. +.+|-+|+-.|..
T Consensus 345 dsp~tar~~l~~~~~~wl~~ag~~~~~~~~~~~Eispl~sy~g 387 (405)
T 3oc9_A 345 DNVNTVKRDWYRLNIYYLKKAGAIVDDSKSPICEISFRKSFEE 387 (405)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCEEECSSCCCEEECTTTCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEcCCCCccEEeCcccccCc
Confidence 789999999999999998 3322 3578888887754
No 216
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A
Probab=40.92 E-value=10 Score=25.61 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhccccCCceeE-----EEEechhhHHhhC
Q psy2111 7 EKKRRAYRTLHGAWFNSKLVT-----VKYLRYERYHERF 40 (63)
Q Consensus 7 e~A~~A~~~LhGRWF~GR~I~-----Aey~p~~~Y~~~F 40 (63)
+.|...+..|... |++.++| ..|.+-++||+.|
T Consensus 107 ~~A~~~~~~~~~~-~~~~IvTeI~p~~~Fy~AE~yHQ~Y 144 (193)
T 3bqh_A 107 AVIAAALKREQQK-YQLPLVVENEPLKNFYDAEEYHQDY 144 (193)
T ss_dssp HHHHHHHHHHHTT-CSSCBCCEEEECCCEEECCGGGTTH
T ss_pred HHHHHHHHHHHHH-hCCCeEEEEecCCCeeEcHHHHHHH
Confidence 4566677778776 5554433 2477888998876
No 217
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=35.04 E-value=8.5 Score=28.33 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHhccccCCc
Q psy2111 5 GWEKKRRAYRTLHGAWFNSK 24 (63)
Q Consensus 5 s~e~A~~A~~~LhGRWF~GR 24 (63)
+.+++.+|+++||..+|.|.
T Consensus 422 ~~~d~~~Av~aLH~~ff~~~ 441 (446)
T 3tvi_A 422 ETVDFEKAVKSIYNAFNEGH 441 (446)
T ss_dssp EGGGHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHHhccc
Confidence 35688999999999999985
No 218
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=34.86 E-value=13 Score=26.85 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhccccCCceeEEE------EechhhHHhhC
Q psy2111 6 WEKKRRAYRTLHGAWFNSKLVTVK------YLRYERYHERF 40 (63)
Q Consensus 6 ~e~A~~A~~~LhGRWF~GR~I~Ae------y~p~~~Y~~~F 40 (63)
.+.|.+.++.|.++| + +.|..+ |.+-++|||.|
T Consensus 104 ~~~a~~~~~~~~~~~-~-~~IvTeI~p~~~Fy~AE~yHQ~Y 142 (313)
T 3e0m_A 104 LPAIYTVVQEQERML-G-RKIAVEVEQLRHYILAEDYHQDY 142 (313)
T ss_dssp HHHHHHHHHHHHHHH-S-SCCCCEEEECCCEEECCGGGTTH
T ss_pred HHHHHHHHHHHHHhc-C-CCeEEEEeeccceeEcHHHHHHH
Confidence 456777788888765 4 445544 66778888875
No 219
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.09 E-value=16 Score=19.56 Aligned_cols=26 Identities=12% Similarity=-0.025 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHhccc--cCCceeEEEEec
Q psy2111 3 EVGWEKKRRAYRTLHGAW--FNSKLVTVKYLR 32 (63)
Q Consensus 3 c~s~e~A~~A~~~LhGRW--F~GR~I~Aey~p 32 (63)
+.+.++|.+ ++|.- +.|+.|.+++..
T Consensus 49 f~~~~~a~~----~~~~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 49 FADDQIAQS----LCGEDLIIKGISVHISNAE 76 (88)
T ss_dssp CSCHHHHHH----TTTCEEEETTEEEEEECCC
T ss_pred ECCHHHHHH----HhcCCceeCCEEEEEEecC
Confidence 567888864 45554 489999988754
No 220
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=31.79 E-value=11 Score=23.81 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=18.8
Q ss_pred HhccccCCceeEEEEechhhHHhhCcC
Q psy2111 16 LHGAWFNSKLVTVKYLRYERYHERFPQ 42 (63)
Q Consensus 16 LhGRWF~GR~I~Aey~p~~~Y~~~FP~ 42 (63)
-|||+|-|+.|.++. .+-|.=.|.+
T Consensus 18 ~ngryy~~~V~~~~~--~~~y~V~F~D 42 (123)
T 2xdp_A 18 RNTRYYSCRVMAVTS--QTFYEVMFDD 42 (123)
T ss_dssp CCCCCCCCEEEEEEE--EEEEEEEETT
T ss_pred CCCcEEeEEEEEEee--EEEEEEEcCC
Confidence 379999999999885 5566655554
No 221
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=31.01 E-value=20 Score=25.32 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHhcc-ccCCceeEEEEechhhHHhhCcC
Q psy2111 2 GEVGWEKKRRAYRTLHGA-WFNSKLVTVKYLRYERYHERFPQ 42 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGR-WF~GR~I~Aey~p~~~Y~~~FP~ 42 (63)
.|.+.|+|..+.+. +| .++...|..|-++...| ++|+
T Consensus 72 G~~taeeAv~~a~l--are~~gt~~iKlEvi~d~~~--l~pD 109 (268)
T 2htm_A 72 GARTAEEAVRLARL--GRLLTGERWVKLEVIPDPTY--LLPD 109 (268)
T ss_dssp TCCSHHHHHHHHHH--HHHHHCCSEEBCCCCSCTTT--TCCC
T ss_pred CCCCHHHHHHHHHh--hhHhcCcceeeeeeccCccc--cCcC
Confidence 59999999998876 66 78888898888888777 6766
No 222
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=28.64 E-value=31 Score=23.44 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcc-ccCCceeEE-----EEechhhHHhhC
Q psy2111 7 EKKRRAYRTLHGA-WFNSKLVTV-----KYLRYERYHERF 40 (63)
Q Consensus 7 e~A~~A~~~LhGR-WF~GR~I~A-----ey~p~~~Y~~~F 40 (63)
+.|.+.++.|... .|++.++|- .|.|-++|||.|
T Consensus 126 ~~A~~~~~~lq~~g~~~~~IvTeI~p~~~Fy~AE~YHQ~Y 165 (203)
T 1nwa_A 126 RIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDY 165 (203)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCCEEEECCCEEECCGGGTTH
T ss_pred HHHHHHHHHHHHhcCcCCCeEEEEecCCCEEEChHHHHHH
Confidence 3455556666543 355544432 377888888765
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=27.52 E-value=36 Score=18.25 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhccccCCceeEEEEe
Q psy2111 7 EKKRRAYRTLHGAWFNSKLVTVKYL 31 (63)
Q Consensus 7 e~A~~A~~~LhGRWF~GR~I~Aey~ 31 (63)
+.|..+++.|.+-+..||.+.++..
T Consensus 50 ~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 50 GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred HHHHHHHHHhccccCcCceEEEEEC
Confidence 4678899999999999999988754
No 224
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}
Probab=26.81 E-value=27 Score=22.96 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcc-ccCCceeE-E----EEechhhHHhhC
Q psy2111 8 KKRRAYRTLHGA-WFNSKLVT-V----KYLRYERYHERF 40 (63)
Q Consensus 8 ~A~~A~~~LhGR-WF~GR~I~-A----ey~p~~~Y~~~F 40 (63)
.|...+..|... .|+++++| + .|.+-++|||.|
T Consensus 104 ~a~~~~~~l~~~~~~~~~IvTei~p~~~Fy~AE~yHQ~Y 142 (168)
T 4gwb_A 104 IAQETIADVEASGLWPGKVVTEVEPVRDFWEAEPEHQNY 142 (168)
T ss_dssp HHHHHHHHHHHHTCSSSCCCCEEEECCCEEECCGGGTTH
T ss_pred HHHHHHHHHHHcccCCCCEEEEEEecCCeeECHHHHHHH
Confidence 344555555443 35555443 1 377788888876
No 225
>2w82_A ORF18, ARDA; DNA mimic, replication inhibitor; 2.80A {Enterococcus faecalis}
Probab=26.49 E-value=8.9 Score=24.41 Aligned_cols=8 Identities=63% Similarity=1.356 Sum_probs=6.0
Q ss_pred HHhccccC
Q psy2111 15 TLHGAWFN 22 (63)
Q Consensus 15 ~LhGRWF~ 22 (63)
.|||+||+
T Consensus 18 ~l~G~W~~ 25 (165)
T 2w82_A 18 ELVGAWFT 25 (165)
T ss_dssp SEEEEEEE
T ss_pred ceeeEEEe
Confidence 47889975
No 226
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=26.46 E-value=56 Score=17.05 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHhc
Q psy2111 1 MGEVGWEKKRRAYRTLHG 18 (63)
Q Consensus 1 ~kc~s~e~A~~A~~~LhG 18 (63)
|++.+.+.+..|++.-+|
T Consensus 21 MGF~~~~~~~~AL~~t~g 38 (53)
T 2knz_A 21 MGFINREANLQALIATGG 38 (53)
T ss_dssp TTCCCHHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHHhCC
Confidence 677788888888888776
No 227
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=25.38 E-value=63 Score=16.52 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=14.3
Q ss_pred CCCCCHHHHHHHHHHHhc
Q psy2111 1 MGEVGWEKKRRAYRTLHG 18 (63)
Q Consensus 1 ~kc~s~e~A~~A~~~LhG 18 (63)
|++.+.+.+..|+++-+|
T Consensus 17 MGF~d~~~~~~AL~~~~g 34 (46)
T 2bwb_A 17 MGFFDFDRNVAALRRSGG 34 (46)
T ss_dssp TTCCCHHHHHHHHHHHTT
T ss_pred cCCCcHHHHHHHHHHhCC
Confidence 677778888888887776
No 228
>2quy_A Penicillin acylase; autoproteolysis, NTN, OXY-anion HOLE, antibiotic resistance, hydrolase, zymogen; 1.70A {Bacillus sphaericus} PDB: 3pva_A 2iwm_A 3mji_A 2z71_A* 2pva_A
Probab=25.06 E-value=68 Score=22.06 Aligned_cols=31 Identities=3% Similarity=-0.065 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHhcccc-------------------CCceeEEEEech
Q psy2111 2 GEVGWEKKRRAYRTLHGAWF-------------------NSKLVTVKYLRY 33 (63)
Q Consensus 2 kc~s~e~A~~A~~~LhGRWF-------------------~GR~I~Aey~p~ 33 (63)
.|.++++|..+++.++ -+- .|+.|.+|+++-
T Consensus 112 ~~~tV~EA~~~L~~~~-i~~~~~~~~~~~~~~H~~i~D~sG~s~viE~~~g 161 (335)
T 2quy_A 112 NCVTVDDVIEKLTSYT-LLNEANIILGFAPPLHYTFTDASGESIVIEPDKT 161 (335)
T ss_dssp HCCSHHHHHHHHHTEE-EBCCCCTTTSSCCCEEEEEECTTCCEEEEEEETT
T ss_pred cCCCHHHHHHHHhhCe-eeccccCCCCCCcceEEEEEcCCCCEEEEEEeCC
Confidence 4999999999999865 221 689999999974
No 229
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=24.38 E-value=19 Score=22.28 Aligned_cols=20 Identities=30% Similarity=0.218 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHhccccCCc
Q psy2111 5 GWEKKRRAYRTLHGAWFNSK 24 (63)
Q Consensus 5 s~e~A~~A~~~LhGRWF~GR 24 (63)
+.+++.+|+++||..+|.+.
T Consensus 141 ~~~d~~~Av~~Lh~~f~~~~ 160 (167)
T 2dt9_A 141 PAEYAEAALRAVHQAFELDK 160 (167)
T ss_dssp EGGGHHHHHHHHHHHTC---
T ss_pred eHHHHHHHHHHHHHHHcCCc
Confidence 35678999999999988664
No 230
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=24.03 E-value=67 Score=16.70 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHhc
Q psy2111 1 MGEVGWEKKRRAYRTLHG 18 (63)
Q Consensus 1 ~kc~s~e~A~~A~~~LhG 18 (63)
|++.+.+.+..|++.-+|
T Consensus 22 MGF~~~~~~~~AL~~t~g 39 (52)
T 2jy5_A 22 MGFLNREANLQALIATGG 39 (52)
T ss_dssp TTCCCHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhCC
Confidence 677788888888888776
No 231
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=23.21 E-value=59 Score=19.71 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhccccCCc
Q psy2111 6 WEKKRRAYRTLHGAWFNSK 24 (63)
Q Consensus 6 ~e~A~~A~~~LhGRWF~GR 24 (63)
.|+-...++.||-.|-+|+
T Consensus 9 ledlqevlknlhknwhggk 27 (102)
T 1p68_A 9 LEDLQEVLKNLHKNWHGGK 27 (102)
T ss_dssp HHHHHHHHHHHHTTSSSCS
T ss_pred HHHHHHHHHHHHhcccCCc
Confidence 4677788999999999997
No 232
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=23.19 E-value=21 Score=22.71 Aligned_cols=21 Identities=19% Similarity=-0.038 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHhccccCCce
Q psy2111 5 GWEKKRRAYRTLHGAWFNSKL 25 (63)
Q Consensus 5 s~e~A~~A~~~LhGRWF~GR~ 25 (63)
+.+++.+|+++||..+|-++.
T Consensus 142 ~~~d~~~Av~aLH~~f~l~~~ 162 (181)
T 3s1t_A 142 RDTELDKAVVALHEAFGLGGD 162 (181)
T ss_dssp EGGGHHHHHHHHHHHHTCCC-
T ss_pred eHHHHHHHHHHHHHHHcCCCC
Confidence 356789999999999998875
No 233
>3bx6_A Alpha-1-acid glycoprotein; plasma protein, acute phase protein, polymorphism, pyrrolidone carboxylic acid, signaling protei; 1.80A {Homo sapiens} PDB: 3kq0_A 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=22.49 E-value=38 Score=21.93 Aligned_cols=38 Identities=21% Similarity=0.481 Sum_probs=28.0
Q ss_pred HHHHhccccCCceeEEEEechhhHHhhCcCcccCCcccccCC
Q psy2111 13 YRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSN 54 (63)
Q Consensus 13 ~~~LhGRWF~GR~I~Aey~p~~~Y~~~FP~a~~a~~pL~ps~ 54 (63)
.+.|-|+|| ..|-......|+...-.-..+..-|+|+.
T Consensus 18 ~~q~~GKWy----~Ia~As~~~~~~~~~~~~~s~~~~l~~~~ 55 (192)
T 3bx6_A 18 LDQITGKWF----YIASAFRNEEYNKSVQEIQATFFYFTPNK 55 (192)
T ss_dssp HHHHCEEEE----EEEEEESSHHHHHHHTTEEEEEEEEEEET
T ss_pred hhheeeeEE----EEEEEeCCHHHHHhhCceeEEEEEEecCC
Confidence 567899999 56666777788887765555677777763
No 234
>1pm1_X Nitrophorin 2, NP2, prolixin-S; beta barrel, lipocalin, imidazole, ferric heme, blood clotting inhibitor; HET: HEM; 1.10A {Rhodnius prolixus} SCOP: b.60.1.1 PDB: 2all_X* 2amm_X* 2hys_A* 1euo_A* 1pee_A* 1t68_X* 2acp_X* 2ah7_X* 2al0_X* 2gtf_X* 2a3f_X* 2eu7_X* 2asn_X*
Probab=21.93 E-value=5.7 Score=25.17 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=11.2
Q ss_pred CCCC-CHHHHH--HHHHHHhccccC
Q psy2111 1 MGEV-GWEKKR--RAYRTLHGAWFN 22 (63)
Q Consensus 1 ~kc~-s~e~A~--~A~~~LhGRWF~ 22 (63)
|+|. +++... ..-+=|.|.||-
T Consensus 1 ~~C~~~~~~m~nFd~~kff~G~WY~ 25 (180)
T 1pm1_X 1 MDCSTNISPKQGLDKAKYFSGKWYV 25 (180)
T ss_dssp CCCCSCCCCCSSCCHHHHSSSCEEE
T ss_pred CcCCCCCccccCCChHHcCCceEEE
Confidence 5666 433222 233445788874
No 235
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=21.53 E-value=50 Score=17.93 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHH----Hhcc
Q psy2111 3 EVGWEKKRRAYRT----LHGA 19 (63)
Q Consensus 3 c~s~e~A~~A~~~----LhGR 19 (63)
++++|+|..|++. |+|.
T Consensus 33 f~T~eeAA~AyD~Aa~~~~G~ 53 (63)
T 1gcc_A 33 FETAEDAALAYDRAAFRMRGS 53 (63)
T ss_dssp ESSHHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHHhcCc
Confidence 5789999988764 5554
No 236
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.31 E-value=46 Score=16.80 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=9.8
Q ss_pred hhhHHhhCcCccc
Q psy2111 33 YERYHERFPQAKA 45 (63)
Q Consensus 33 ~~~Y~~~FP~a~~ 45 (63)
..+||.++|....
T Consensus 22 Ike~Hrr~P~~~~ 34 (38)
T 2dt7_A 22 IKEFHRKHPNEIC 34 (38)
T ss_dssp HHHHHHSCCSSCC
T ss_pred HHHHHHhCCCccc
Confidence 4579999998653
No 237
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Probab=20.12 E-value=25 Score=27.02 Aligned_cols=17 Identities=35% Similarity=0.905 Sum_probs=13.2
Q ss_pred HHHHHHHHHhc---------cccCCc
Q psy2111 8 KKRRAYRTLHG---------AWFNSK 24 (63)
Q Consensus 8 ~A~~A~~~LhG---------RWF~GR 24 (63)
....|.+.||| ||||.=
T Consensus 291 ~~~~~~~~LhG~g~~~~~~NRWfDKs 316 (639)
T 1t1u_A 291 DTHRALQLLHGGGCSLNGANRWYDKS 316 (639)
T ss_dssp HHHHHHHHHHTTSTTTTTTSCCTTBS
T ss_pred HHHHHHHhccCCCCCCCCCccccccc
Confidence 34577889997 899983
Done!