BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>psy2111
MGEVGWEKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL
QQA
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with LEMD3 LEMD3 LEMD3 Uncharacterized protein	protein from Gallus gallus	6.2e-12
BLAST match view associations BLAST with LEMD3 LEMD3 LEMD3 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-11
BLAST match view associations BLAST with LEMD3 LEMD3 LEMD3 Uncharacterized protein	protein from Canis lupus familiaris	1.7e-11
BLAST match view associations BLAST with LEMD3 LEMD3 LEMD3 Uncharacterized protein	protein from Bos taurus	2.4e-11
BLAST match view associations BLAST with lemd3 lemd3 lemd3 LEM domain containing 3	gene_product from Danio rerio	2.7e-11
BLAST match view associations BLAST with LEMD3 LEMD3 LEMD3 Inner nuclear membrane protein Man1	protein from Homo sapiens	3.0e-11
BLAST match view associations BLAST with Lemd3 Lemd3 Lemd3 LEM domain containing 3	protein from Mus musculus	3.1e-11
BLAST match view associations BLAST with Lemd3 Lemd3 Lemd3 LEM domain containing 3	gene from Rattus norvegicus	6.5e-11
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b	protein from Homo sapiens	0.00044
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy2111
        (63 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|F1NHX3 - symbol:LEMD3 "Uncharacterized protein"...   168  6.2e-12   1
UNIPROTKB|F1NZN4 - symbol:LEMD3 "Uncharacterized protein"...   168  7.3e-12   1
UNIPROTKB|J9NVV1 - symbol:LEMD3 "Uncharacterized protein"...   168  1.3e-11   1
UNIPROTKB|F1PZA4 - symbol:LEMD3 "Uncharacterized protein"...   168  1.7e-11   1
UNIPROTKB|E1BIJ4 - symbol:LEMD3 "Uncharacterized protein"...   168  2.4e-11   1
ZFIN|ZDB-GENE-030131-490 - symbol:lemd3 "LEM domain conta...   167  2.7e-11   1
UNIPROTKB|Q9Y2U8 - symbol:LEMD3 "Inner nuclear membrane p...   167  3.0e-11   1
MGI|MGI:3580376 - symbol:Lemd3 "LEM domain containing 3" ...   167  3.1e-11   1
UNIPROTKB|F1LWZ8 - symbol:Lemd3 "Protein Lemd3" species:1...   164  6.3e-11   1
RGD|1596822 - symbol:Lemd3 "LEM domain containing 3" spec...   164  6.5e-11   1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ...    86  0.00044   2


>UNIPROTKB|F1NHX3 [details] [associations]
            symbol:LEMD3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005639
            "integral to nuclear inner membrane" evidence=IEA]
            InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0005639 GeneTree:ENSGT00530000063791
            EMBL:AADN02009903 EMBL:AADN02009904 IPI:IPI00590059
            Ensembl:ENSGALT00000016052 ArrayExpress:F1NHX3 Uniprot:F1NHX3
        Length = 406

 Score = 168 (64.2 bits), Expect = 6.2e-12, P = 6.2e-12
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPSN    S+
Sbjct:   341 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPSNKHMNSM 390


>UNIPROTKB|F1NZN4 [details] [associations]
            symbol:LEMD3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005639
            "integral to nuclear inner membrane" evidence=IEA] [GO:0030512
            "negative regulation of transforming growth factor beta receptor
            signaling pathway" evidence=IEA] [GO:0030514 "negative regulation
            of BMP signaling pathway" evidence=IEA] [GO:0032926 "negative
            regulation of activin receptor signaling pathway" evidence=IEA]
            [GO:0035914 "skeletal muscle cell differentiation" evidence=IEA]
            [GO:0051726 "regulation of cell cycle" evidence=IEA]
            InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0051726 GO:GO:0032926 GO:GO:0030512
            GO:GO:0030514 GO:GO:0005639 GeneTree:ENSGT00530000063791
            EMBL:AADN02009903 EMBL:AADN02009904 IPI:IPI00822008
            Ensembl:ENSGALT00000038639 OMA:VAGKHEC ArrayExpress:F1NZN4
            Uniprot:F1NZN4
        Length = 436

 Score = 168 (64.2 bits), Expect = 7.3e-12, P = 7.3e-12
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPSN    S+
Sbjct:   371 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPSNKHMNSM 420


>UNIPROTKB|J9NVV1 [details] [associations]
            symbol:LEMD3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005639 "integral to nuclear inner membrane"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0005639 GeneTree:ENSGT00530000063791
            EMBL:AAEX03007007 Ensembl:ENSCAFT00000048719 Uniprot:J9NVV1
        Length = 615

 Score = 168 (64.2 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPSN    S+
Sbjct:   550 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPSNKHMNSM 599


>UNIPROTKB|F1PZA4 [details] [associations]
            symbol:LEMD3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005639 "integral to nuclear inner membrane"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0005639 GeneTree:ENSGT00530000063791
            EMBL:AAEX03007007 Ensembl:ENSCAFT00000036610 OMA:YGKPKLS
            Uniprot:F1PZA4
        Length = 708

 Score = 168 (64.2 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPSN    S+
Sbjct:   643 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPSNKHMNSM 692


>UNIPROTKB|E1BIJ4 [details] [associations]
            symbol:LEMD3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0051726 "regulation of cell cycle" evidence=IEA]
            [GO:0035914 "skeletal muscle cell differentiation" evidence=IEA]
            [GO:0032926 "negative regulation of activin receptor signaling
            pathway" evidence=IEA] [GO:0030514 "negative regulation of BMP
            signaling pathway" evidence=IEA] [GO:0030512 "negative regulation
            of transforming growth factor beta receptor signaling pathway"
            evidence=IEA] [GO:0005639 "integral to nuclear inner membrane"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402
            INTERPRO:IPR003887 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0051726
            GO:GO:0032926 Gene3D:1.10.720.40 InterPro:IPR011015 Pfam:PF03020
            SUPFAM:SSF63451 PROSITE:PS50954 GO:GO:0035914 GO:GO:0030512
            GO:GO:0030514 SMART:SM00540 GO:GO:0005639
            GeneTree:ENSGT00530000063791 OMA:SPIPRYR EMBL:DAAA02013330
            EMBL:DAAA02013331 IPI:IPI00702391 Ensembl:ENSBTAT00000053178
            Uniprot:E1BIJ4
        Length = 913

 Score = 168 (64.2 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPSN    S+
Sbjct:   848 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPSNKHMNSM 897


>ZFIN|ZDB-GENE-030131-490 [details] [associations]
            symbol:lemd3 "LEM domain containing 3" species:7955
            "Danio rerio" [GO:0005639 "integral to nuclear inner membrane"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402
            INTERPRO:IPR003887 ZFIN:ZDB-GENE-030131-490 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.720.40 InterPro:IPR011015
            Pfam:PF03020 SUPFAM:SSF63451 PROSITE:PS50954 SMART:SM00540
            GO:GO:0005639 GeneTree:ENSGT00530000063791 CTD:23592
            HOGENOM:HOG000063699 HOVERGEN:HBG006319 OrthoDB:EOG4HQDHV
            EMBL:BX119963 EMBL:BC168502 IPI:IPI00498035 RefSeq:NP_001038329.1
            UniGene:Dr.106184 SMR:Q5TZH9 STRING:Q5TZH9
            Ensembl:ENSDART00000013604 GeneID:558474 KEGG:dre:558474
            InParanoid:Q5TZH9 OMA:TRYSSGE NextBio:20882487 Uniprot:Q5TZH9
        Length = 841

 Score = 167 (63.8 bits), Expect = 2.7e-11, P = 2.7e-11
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query:     7 EKKRRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSLQQ 62
             E   +A++ LHG+WF+ KLVTVKYLR +RYH+RFPQA     PLKPS+    S+ +
Sbjct:   771 EHSGKAFKALHGSWFDGKLVTVKYLRLDRYHQRFPQALGSNTPLKPSSSSMNSMSR 826


>UNIPROTKB|Q9Y2U8 [details] [associations]
            symbol:LEMD3 "Inner nuclear membrane protein Man1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005639 "integral to nuclear inner membrane"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035914
            "skeletal muscle cell differentiation" evidence=IEA] [GO:0051726
            "regulation of cell cycle" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0030512 "negative regulation of
            transforming growth factor beta receptor signaling pathway"
            evidence=IDA] [GO:0032926 "negative regulation of activin receptor
            signaling pathway" evidence=IDA] [GO:0030514 "negative regulation
            of BMP signaling pathway" evidence=IDA] [GO:0005637 "nuclear inner
            membrane" evidence=IDA] [GO:0016020 "membrane" evidence=TAS]
            [GO:0016021 "integral to membrane" evidence=IDA] InterPro:IPR012677
            InterPro:IPR018996 Pfam:PF09402 INTERPRO:IPR003887 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0051726 GO:GO:0032926
            Gene3D:1.10.720.40 InterPro:IPR011015 Pfam:PF03020 SUPFAM:SSF63451
            PROSITE:PS50954 GO:GO:0035914 GO:GO:0030512 GO:GO:0030514
            SMART:SM00540 GO:GO:0005639 Orphanet:94063 EMBL:AF112299
            EMBL:AF263918 EMBL:AF180135 EMBL:AF180136 EMBL:AF180137
            EMBL:AF180138 EMBL:AF180139 EMBL:AF180140 EMBL:AF180141
            EMBL:AF180142 EMBL:AL137533 IPI:IPI00032491 PIR:T46377
            RefSeq:NP_001161086.1 RefSeq:NP_055134.2 UniGene:Hs.741370 PDB:2CH0
            PDBsum:2CH0 ProteinModelPortal:Q9Y2U8 SMR:Q9Y2U8 IntAct:Q9Y2U8
            MINT:MINT-1199446 STRING:Q9Y2U8 PhosphoSite:Q9Y2U8 DMDM:13629600
            PaxDb:Q9Y2U8 PeptideAtlas:Q9Y2U8 PRIDE:Q9Y2U8 DNASU:23592
            Ensembl:ENST00000308330 GeneID:23592 KEGG:hsa:23592 UCSC:uc001ssl.2
            CTD:23592 GeneCards:GC12P065563 HGNC:HGNC:28887 HPA:HPA025078
            MIM:155950 MIM:166700 MIM:607844 neXtProt:NX_Q9Y2U8 Orphanet:1306
            Orphanet:166119 Orphanet:1879 PharmGKB:PA134907442 eggNOG:NOG70255
            HOGENOM:HOG000063699 HOVERGEN:HBG006319 InParanoid:Q9Y2U8
            OMA:SPIPRYR OrthoDB:EOG4HQDHV PhylomeDB:Q9Y2U8
            EvolutionaryTrace:Q9Y2U8 GenomeRNAi:23592 NextBio:46240
            ArrayExpress:Q9Y2U8 Bgee:Q9Y2U8 CleanEx:HS_LEMD3
            Genevestigator:Q9Y2U8 GermOnline:ENSG00000174106 Uniprot:Q9Y2U8
        Length = 911

 Score = 167 (63.8 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPSN    S+
Sbjct:   846 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTSNTPLKPSNKHMNSM 895


>MGI|MGI:3580376 [details] [associations]
            symbol:Lemd3 "LEM domain containing 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IDA]
            [GO:0005637 "nuclear inner membrane" evidence=ISO] [GO:0005639
            "integral to nuclear inner membrane" evidence=IEA] [GO:0016020
            "membrane" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=ISA] [GO:0030512 "negative regulation of transforming
            growth factor beta receptor signaling pathway" evidence=ISO]
            [GO:0030514 "negative regulation of BMP signaling pathway"
            evidence=ISO] [GO:0032926 "negative regulation of activin receptor
            signaling pathway" evidence=ISO] [GO:0035914 "skeletal muscle cell
            differentiation" evidence=IMP] [GO:0051726 "regulation of cell
            cycle" evidence=IMP] InterPro:IPR012677 InterPro:IPR018996
            Pfam:PF09402 MGI:MGI:3580376 INTERPRO:IPR003887 GO:GO:0016021
            GO:GO:0005635 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
            GO:GO:0051726 Gene3D:1.10.720.40 InterPro:IPR011015 Pfam:PF03020
            SUPFAM:SSF63451 PROSITE:PS50954 GO:GO:0035914 SMART:SM00540
            GO:GO:0005639 CTD:23592 eggNOG:NOG70255 HOGENOM:HOG000063699
            HOVERGEN:HBG006319 OrthoDB:EOG4HQDHV EMBL:AC140381 EMBL:AF112300
            EMBL:BC082610 EMBL:AK140538 IPI:IPI00123867 IPI:IPI00853982
            RefSeq:NP_001074662.2 UniGene:Mm.339371 ProteinModelPortal:Q9WU40
            SMR:Q9WU40 STRING:Q9WU40 PhosphoSite:Q9WU40 PaxDb:Q9WU40
            PRIDE:Q9WU40 GeneID:380664 KEGG:mmu:380664 NextBio:401076
            CleanEx:MM_LEMD3 Genevestigator:Q9WU40
            GermOnline:ENSMUSG00000048661 Uniprot:Q9WU40
        Length = 921

 Score = 167 (63.8 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 30/50 (60%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKP+N    SL
Sbjct:   856 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPANKHMNSL 905


>UNIPROTKB|F1LWZ8 [details] [associations]
            symbol:Lemd3 "Protein Lemd3" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005639 "integral to nuclear inner membrane" evidence=IEA]
            [GO:0030512 "negative regulation of transforming growth factor beta
            receptor signaling pathway" evidence=IEA] [GO:0030514 "negative
            regulation of BMP signaling pathway" evidence=IEA] [GO:0032926
            "negative regulation of activin receptor signaling pathway"
            evidence=IEA] [GO:0035914 "skeletal muscle cell differentiation"
            evidence=IEA] [GO:0051726 "regulation of cell cycle" evidence=IEA]
            InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 RGD:1596822
            INTERPRO:IPR003887 GO:GO:0000166 Gene3D:3.30.70.330
            Gene3D:1.10.720.40 InterPro:IPR011015 Pfam:PF03020 SUPFAM:SSF63451
            PROSITE:PS50954 SMART:SM00540 GO:GO:0005639
            GeneTree:ENSGT00530000063791 IPI:IPI00388697 PRIDE:F1LWZ8
            Ensembl:ENSRNOT00000039532 Uniprot:F1LWZ8
        Length = 902

 Score = 164 (62.8 bits), Expect = 6.3e-11, P = 6.3e-11
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPS+    S+
Sbjct:   837 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCSTPLKPSDKHMNSM 886


>RGD|1596822 [details] [associations]
            symbol:Lemd3 "LEM domain containing 3" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005635 "nuclear envelope" evidence=ISO] [GO:0005637 "nuclear
            inner membrane" evidence=ISO] [GO:0005639 "integral to nuclear
            inner membrane" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=ISO] [GO:0030512 "negative regulation of transforming
            growth factor beta receptor signaling pathway" evidence=ISO]
            [GO:0030514 "negative regulation of BMP signaling pathway"
            evidence=ISO] [GO:0032926 "negative regulation of activin receptor
            signaling pathway" evidence=ISO] [GO:0035914 "skeletal muscle cell
            differentiation" evidence=ISO] [GO:0051726 "regulation of cell
            cycle" evidence=ISO] InterPro:IPR012677 InterPro:IPR018996
            Pfam:PF09402 RGD:1596822 INTERPRO:IPR003887 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0051726 GO:GO:0032926 Gene3D:1.10.720.40
            InterPro:IPR011015 Pfam:PF03020 SUPFAM:SSF63451 PROSITE:PS50954
            GO:GO:0035914 GO:GO:0030512 GO:GO:0030514 SMART:SM00540
            GO:GO:0005639 IPI:IPI00781464 Ensembl:ENSRNOT00000058176
            Uniprot:F1M029
        Length = 923

 Score = 164 (62.8 bits), Expect = 6.5e-11, P = 6.5e-11
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query:    11 RAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPSNDRRYSL 60
             +A++ LHG+WF+ KLVTVKYLR +RYH RFPQA     PLKPS+    S+
Sbjct:   858 KAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCSTPLKPSDKHMNSM 907


>UNIPROTKB|E1P5S2 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
            [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
            SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
        Length = 373

 Score = 86 (35.3 bits), Expect = 0.00044, Sum P(2) = 0.00044
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query:    12 AYRTLHGAWFNSKLVTVKYLRYERYHERFPQAKALVAPLKPS 53
             A   LHG WF  K++T  Y+    YH  FP +      L PS
Sbjct:   330 AVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPS 371

 Score = 28 (14.9 bits), Expect = 0.00044, Sum P(2) = 0.00044
 Identities = 4/5 (80%), Positives = 5/5 (100%)

Query:     3 EVGWE 7
             EVGW+
Sbjct:   282 EVGWD 286


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       63        63   0.00091  102 3  11 22  0.38    28
                                                     29  0.42    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  11
  No. of states in DFA:  501 (53 KB)
  Total size of DFA:  97 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.04u 0.11s 7.15t   Elapsed:  00:00:00
  Total cpu time:  7.04u 0.11s 7.15t   Elapsed:  00:00:00
  Start:  Thu Aug 15 16:21:52 2013   End:  Thu Aug 15 16:21:52 2013
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
