RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2111
         (63 letters)



>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 34.6 bits (79), Expect = 1e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 10  RRAYRTLHGAWFNSKLVTVKYLRYERYHER 39
           ++A + L G  F +++V  KY   + YH R
Sbjct: 72  QKAMQGLTGRKFANRVVVTKYCDPDSYHRR 101


>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
          1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 95

 Score = 23.9 bits (51), Expect = 1.3
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 7  EKKRRAYRTLHGAWFNSKLVTVKYLRYER 35
               A     G  ++   + V++ R  R
Sbjct: 64 RDAEDAVYGRDGYDYDGYRLRVEFPRSGR 92


>d1jmta_ d.58.7.3 (A:) U2AF35
           (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 23.8 bits (51), Expect = 1.5
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 11  RAYRTLHGAWFNSKLVTVKY 30
           +A   L+  WFN + +  + 
Sbjct: 83  KAVIDLNNRWFNGQPIHAEL 102


>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 22.8 bits (48), Expect = 3.7
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 10 RRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQ 42
            A R L+G  F+ + + V     E+  E    
Sbjct: 64 LSAMRNLNGREFSGRALRVDNAASEKNKEELKS 96


>d1dqia_ b.1.13.1 (A:) Superoxide reductase (SOR) {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 124

 Score = 22.3 bits (47), Expect = 4.6
 Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 2/19 (10%)

Query: 11  RAYRTLHGAWFNSKLVTVK 29
            +Y  +HG W N   VT++
Sbjct: 108 LSYCNIHGLWENE--VTLE 124


>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 22.3 bits (47), Expect = 5.0
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 10 RRAYRTLHGAWFNSKLVTVKYLRYERYHERFPQAK 44
          + A   L G    ++ + V Y    R  ++    K
Sbjct: 60 KNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKK 94


>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 99

 Score = 21.8 bits (46), Expect = 7.0
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 11 RAYRTLHGAWFNSKLVTVKY 30
             +TL G WF  + +T + 
Sbjct: 72 YCIQTLDGRWFGGRQITAQA 91


>d2nlva1 d.326.1.1 (A:1-111) Hypothetical protein Ava3825
          {Anabaena variabilis [TaxId: 1172]}
          Length = 111

 Score = 21.5 bits (46), Expect = 8.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 3  EVGWEKKRRAYRTL 16
           VGW+   R YR +
Sbjct: 45 NVGWQGLNRIYRCV 58


>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
          N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 89

 Score = 21.5 bits (45), Expect = 9.6
 Identities = 4/29 (13%), Positives = 10/29 (34%)

Query: 10 RRAYRTLHGAWFNSKLVTVKYLRYERYHE 38
            A   ++ +    + + V   +  R  E
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKE 89


>d2nwva1 d.326.1.1 (A:2-113) Hypothetical protein Ava3320
          {Anabaena variabilis [TaxId: 1172]}
          Length = 112

 Score = 21.6 bits (46), Expect = 9.8
 Identities = 4/14 (28%), Positives = 6/14 (42%)

Query: 3  EVGWEKKRRAYRTL 16
           V W+  +R   T 
Sbjct: 46 AVDWQGSKRIKYTY 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.133    0.418 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 244,228
Number of extensions: 8435
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 12
Length of query: 63
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 31
Effective length of database: 1,968,236
Effective search space: 61015316
Effective search space used: 61015316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)