Query psy2112
Match_columns 336
No_of_seqs 142 out of 614
Neff 7.3
Searched_HMMs 46136
Date Sat Aug 17 00:34:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01130 CD36: CD36 family; I 100.0 2.2E-76 4.8E-81 591.7 24.5 281 3-335 43-403 (467)
2 KOG3776|consensus 100.0 5.3E-75 1.2E-79 576.4 23.3 281 3-335 54-407 (507)
3 KOG3776|consensus 99.0 7.9E-11 1.7E-15 118.2 2.8 109 126-234 178-295 (507)
4 PF01130 CD36: CD36 family; I 99.0 1.8E-10 4E-15 115.9 4.9 100 124-224 166-279 (467)
5 PF04022 Staphylcoagulse: Stap 31.5 34 0.00074 20.1 1.4 14 60-73 13-26 (27)
6 PF07356 DUF1481: Protein of u 19.1 1.5E+02 0.0033 26.5 3.9 18 60-77 68-85 (195)
7 PF04873 EIN3: Ethylene insens 15.8 50 0.0011 32.3 0.0 45 16-71 59-108 (354)
8 smart00218 ZU5 Domain present 11.9 1.2E+02 0.0025 24.4 1.1 21 257-283 67-87 (104)
9 PF03393 Pneumo_matrix: Pneumo 11.9 17 0.00037 32.8 -4.0 38 23-66 205-244 (252)
10 PF11271 DUF3068: Protein of u 11.3 1.9E+02 0.0041 27.4 2.5 36 200-236 140-183 (301)
No 1
>PF01130 CD36: CD36 family; InterPro: IPR002159 CD36 is a transmembrane, highly glycosylated, 88kDa glycoprotein expressed by monocytes, macrophages, platelets, microvascular endothelial cells and adipose tissues. Platelet glycoprotein IV (GP IV)(GPIIIb) (CD36 antigen) is also called GPIV, OKM5-antigen or PASIV. CD36 recognises oxidized low density lipoprotein, long chain fatty acids, anionic phospholipids, collagen types I, IV and V, thrombospondin (TSP) and Plasmodium falciparum infected erythrocytes. The recognition of apoptotic neutrophils is in co-operation with TSP and avb3. Other ligands may still be unknown. CD36 is a scavenger receptor for oxidized LDL and shed photoreceptor outer segments and in recognition and phagocytosis of apoptotic cells and is the cell adhesion molecule in platelet adhesion and aggregation, platelet-monocyte and platelet-tumor cell interaction []. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0007155 cell adhesion, 0016020 membrane
Probab=100.00 E-value=2.2e-76 Score=591.70 Aligned_cols=281 Identities=41% Similarity=0.838 Sum_probs=259.1
Q ss_pred CCCCCCCcceEEEEEeccCCCccCCCCcCCCCcccCCeEEEeCCCCCCCeeEEEeeeeceEEccCC-eEEEEeceeeEEe
Q psy2112 3 APLGPTLKKSLNFYIAYKKLEGFNAYGIPTSSVKVCPHIVDAAPSIDCQSTSENKEVVQVKFHDNG-TVSYKQERRWYFD 81 (336)
Q Consensus 3 ~~~~pp~~~~~~~y~F~~~~NvTN~~e~l~~g~K~~p~v~EvGPy~~~~vY~E~~~k~nv~f~~n~-tvsy~~~~~~~F~ 81 (336)
.|++||+|++++||+| ||||||||+++|+| |+|+|+||| ||+|+++|+|++|++|+ ||+|+++++|+|+
T Consensus 43 ~W~~~p~p~~~~~y~f----NvTNp~ev~~~g~k--P~~~EvGPY----~y~e~~~k~nv~~~~~~~tvsY~~~~~~~F~ 112 (467)
T PF01130_consen 43 NWKKPPVPIYFKFYFF----NVTNPEEVLNGGAK--PNVQEVGPY----VYREYREKVNVTFNDNGSTVSYRQKRTFFFD 112 (467)
T ss_pred hhhcCCCccEEEEEEE----eccCHHHHhCcCCC--ceEEEeCCE----EEEeeeeeeeeEEcCCCcEEEEEeeeeEEec
Confidence 5999999999999999 99999999998999 999999999 99999999999999877 8999999999999
Q ss_pred cCCCCC-CCCCcEEecccee------------------------------------------------------------
Q psy2112 82 SEYSAG-SLKDNVTTLNAVV------------------------------------------------------------ 100 (336)
Q Consensus 82 ~e~S~~-~~~d~I~~pN~~~------------------------------------------------------------ 100 (336)
||+|++ .++|.||+||+++
T Consensus 113 ~~~S~~~~~~d~it~~N~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~fv~~tv~e~Lf~GY~dpll~~~~~~~~~~~~ 192 (467)
T PF01130_consen 113 PELSCGCSEDDTITTPNIPLLGAASLVRNMSPFVKSLINLLLNSLGEKLFVTRTVRELLFDGYEDPLLSLAKKLLDFLRP 192 (467)
T ss_pred cccCCCCCccceEEeccHHHhhhhhhhccccHHHHHHHHHhhhccCCcceEeccHHHhhhccCchHHHHHHhhhhhhcCC
Confidence 999999 6999999999998
Q ss_pred ------------eecCCccccceEEEecCcccccceeeEEEeCCcccccccCC-ccccccCCcccccCCCCCCCCeEEEe
Q psy2112 101 ------------VRNGSDQFDGHFNIDTGQNGIHNIGKVYQWQYTNTTSFYEG-TCAMVNGTSGTLFPPVRSKQDRVTMY 167 (336)
Q Consensus 101 ------------~~n~s~~~~~~~~i~tG~~d~~~~g~i~~w~~~d~l~~~~~-~~~~inGt~G~~f~~~~~~~~~l~vf 167 (336)
.+|++. ++.|+|+||.+|.+++|++..|++.+.+.+|.+ .|++|+||+|++|+|.+++++.+.+|
T Consensus 193 ~~~~~~~fg~~~~~N~t~--~~~~~v~TG~~d~~~~g~i~~~ng~~~l~~w~~~~cn~i~GtdG~~fpP~l~~~~~l~~f 270 (467)
T PF01130_consen 193 DLIPFDKFGLFYGRNGTY--DGVYTVNTGKDDISKVGQIDSWNGSTSLTYWNGEECNMINGTDGSFFPPFLTKDDTLYVF 270 (467)
T ss_pred ccCCCCccccccccCCCC--ceeEEEECCCCChhhhceeeEECCcccCCCcCCccccceeCCccCccCCCCCCCceEEEE
Confidence 245553 588999999999999999999999999998875 68888888888888877777777777
Q ss_pred CCCcccceeeeeeeccccccCCccCcccCCcCCccCCCCCCCceEEeeecccccccccCCeeeeEEecCcccccCCCCCC
Q psy2112 168 SPDLCSRTCQWQYTNTTSFYEGTCAMVNGTSGTLFPPVRSKQDRVTMYSPDLCRVESVEGVPGYRFVGSEYIVDNGTLDP 247 (336)
Q Consensus 168 ~~d~cr~~~~~~~~~~~~~~~~~Cn~I~Gtdg~~fpp~l~~~~~l~~f~~~lcr~~~~~gi~~~ry~~~~~~f~~~~~~p 247 (336)
.+|+||++ .++|+ ++.+++||+++||++++++|++++.+|
T Consensus 271 ~~dlCRs~-~l~y~---------------------------------------~~~~~~Gi~~~rf~~~~~~f~~~~~~~ 310 (467)
T PF01130_consen 271 SSDLCRSL-PLEYE---------------------------------------EEVTVKGIPAYRFVLPPNVFDNGSNNP 310 (467)
T ss_pred ehhcceeE-EEEEe---------------------------------------cceecCCeEEEEEEEChhHhcCcCcCc
Confidence 77778777 77777 667899999999999999999999999
Q ss_pred CCCCccCCC-----CCCCcceeccccCCCcceeeccccccCCChhhhhccccCCCCccCCceeEeeeccCCccceeeeee
Q psy2112 248 SNECFCNGE-----CVPSGVINVTSCRFGAPAFVSYPHFYKADPYFASLVTGMKPERDKHEFYLTLEPSTGIPLDVGARF 322 (336)
Q Consensus 248 ~n~c~c~~~-----c~~~G~~~ls~c~~g~Pi~~S~PHF~~~d~~~~~~v~Gl~P~~~~h~~~~~iEP~tG~~l~~~~rl 322 (336)
+|+|||.+. |+++|++|||+|++|+|+++|+||||+|||+++++|+||+||+++|++|++|||+||+||++++|+
T Consensus 311 ~n~c~C~~~~~~~~c~p~G~~~ls~C~~g~Pi~~S~PHF~~adp~~~~~v~Gl~Pd~~~H~~~~~iEP~tG~~l~~~~rl 390 (467)
T PF01130_consen 311 ENKCFCPKNSDECNCLPSGLLNLSPCQFGAPIFVSFPHFYNADPSLLEAVEGLNPDPEKHETYIDIEPTTGIPLQAAKRL 390 (467)
T ss_pred cccccCCCCCcccccCCcceEechhhcCCCCccccCcccccCChhhhhcCCCCCCCcccceeEEEeecccCeeeeeeEee
Confidence 999999732 999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCC
Q psy2112 323 QINLLLQPIESIM 335 (336)
Q Consensus 323 Q~N~~v~~~~~i~ 335 (336)
|+|+.|++.++|+
T Consensus 391 Q~N~~v~~~~~~~ 403 (467)
T PF01130_consen 391 QINLLVRPTDGIS 403 (467)
T ss_pred eeeEEecCccccc
Confidence 9999999999864
No 2
>KOG3776|consensus
Probab=100.00 E-value=5.3e-75 Score=576.38 Aligned_cols=281 Identities=37% Similarity=0.743 Sum_probs=261.2
Q ss_pred CCCCCCCcceEEEEEeccCCCccCCCCcCCCCcccCCeEEEeCCCCCCCeeEEEeeeeceEEccCCeEEEEe-ceeeEEe
Q psy2112 3 APLGPTLKKSLNFYIAYKKLEGFNAYGIPTSSVKVCPHIVDAAPSIDCQSTSENKEVVQVKFHDNGTVSYKQ-ERRWYFD 81 (336)
Q Consensus 3 ~~~~pp~~~~~~~y~F~~~~NvTN~~e~l~~g~K~~p~v~EvGPy~~~~vY~E~~~k~nv~f~~n~tvsy~~-~~~~~F~ 81 (336)
.|.+||+++++++||| ||||||||+++|+| |+|+|+||| ||+|.+.|+|+.|++|+|++|.+ +|+|+|+
T Consensus 54 ~W~~pp~~~~~~~yiF----NvTNpde~~~~~~k--p~v~EvGPy----vy~E~~~K~~~~f~~n~tv~f~~~~k~~~F~ 123 (507)
T KOG3776|consen 54 SWLNPPYPIYLNFYIF----NVTNPDEFLSGGAK--PNVQEVGPY----VYREIEQKVNIDFNENNTVSFYQNRKTYVFN 123 (507)
T ss_pred hhhcCCCccEEEEEEE----ecCCHHHhhCcCCC--CceEeeCCe----EEEEEecccceeeccCCcEEEEeeccEEEec
Confidence 6999999999999999 99999999998899 999999999 99999999999999999988777 9999999
Q ss_pred cCCCCCCC-CCcEEecccee------------------------------------------------------------
Q psy2112 82 SEYSAGSL-KDNVTTLNAVV------------------------------------------------------------ 100 (336)
Q Consensus 82 ~e~S~~~~-~d~I~~pN~~~------------------------------------------------------------ 100 (336)
|++|++++ +|.|++||+++
T Consensus 124 p~~S~~~~~~d~I~~pN~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~f~~~tV~e~Lf~GYeDpll~l~~~~~~~~~~~ 203 (507)
T KOG3776|consen 124 PEESVGDCKDDKITVPNIPALGAATSVKREQFLRLAISIALTILGEKPFVTVTVGELLFDGYEDPLLSLINRFVPIKPPS 203 (507)
T ss_pred hhhcCCCcCcCeEEecCchhhhhhhhhhhhHHHHHHHHHHHHHhCCCcceEeeHHHHHHhhcccHHHHHHhhcCCcCCcc
Confidence 99999998 79999999773
Q ss_pred -------eecCCccccceEEEecCcccccceeeEEEeCCcccccccCC-ccccccCCcccccCCCCCCCCeEEEeCCCcc
Q psy2112 101 -------VRNGSDQFDGHFNIDTGQNGIHNIGKVYQWQYTNTTSFYEG-TCAMVNGTSGTLFPPVRSKQDRVTMYSPDLC 172 (336)
Q Consensus 101 -------~~n~s~~~~~~~~i~tG~~d~~~~g~i~~w~~~d~l~~~~~-~~~~inGt~G~~f~~~~~~~~~l~vf~~d~c 172 (336)
.+|++. ++.|+|+||.+|+++.|+|..|++.+.+.||.. .|++|+||+|.+|+|++.+++.+.+|.+|+|
T Consensus 204 ~r~G~~~~~Ngt~--d~~y~V~tG~dd~~k~g~I~~wng~~~l~~W~~~~c~~I~Gtdgs~FpP~l~k~d~l~if~~~~C 281 (507)
T KOG3776|consen 204 PRFGLFYGYNGTS--DGVYTVNTGKDDISKFGQIDTWNGLTHLPWWETDECNMINGTDGSLFPPFLQKEDELYIFSSDLC 281 (507)
T ss_pred cceeeecccCCCc--cccEEEecCCCCHHHCeeeeEECCcccCCccCccccccccCCCcccCCCccCCCCeeEEEchhhh
Confidence 567764 689999999999999999999999999999874 7888888888888888888888888888888
Q ss_pred cceeeeeeeccccccCCccCcccCCcCCccCCCCCCCceEEeeecccccccccCCeeeeEEecCcccccCCCCCCCCCCc
Q psy2112 173 SRTCQWQYTNTTSFYEGTCAMVNGTSGTLFPPVRSKQDRVTMYSPDLCRVESVEGVPGYRFVGSEYIVDNGTLDPSNECF 252 (336)
Q Consensus 173 r~~~~~~~~~~~~~~~~~Cn~I~Gtdg~~fpp~l~~~~~l~~f~~~lcr~~~~~gi~~~ry~~~~~~f~~~~~~p~n~c~ 252 (336)
|++ .++|. ++++++||+++||+++.+.||++..+|++.||
T Consensus 282 Rsi-~l~y~---------------------------------------~~~~~~Gi~~~rf~~p~~~~d~~~~~~~~~Cy 321 (507)
T KOG3776|consen 282 RSI-PLTYS---------------------------------------ETVTVNGIPAYRFVVPEDSFDNTLDNPDGFCY 321 (507)
T ss_pred cce-EeEee---------------------------------------eEEEECCccceeeccchhhcCCCCCCCCcccc
Confidence 887 77777 77899999999999999999999999999999
Q ss_pred cCC---CCCCCcceeccccCCCcceeeccccccCCChhhhhccccCCCCccCCceeEeeeccCCccceeeeeeEEEEeec
Q psy2112 253 CNG---ECVPSGVINVTSCRFGAPAFVSYPHFYKADPYFASLVTGMKPERDKHEFYLTLEPSTGIPLDVGARFQINLLLQ 329 (336)
Q Consensus 253 c~~---~c~~~G~~~ls~c~~g~Pi~~S~PHF~~~d~~~~~~v~Gl~P~~~~h~~~~~iEP~tG~~l~~~~rlQ~N~~v~ 329 (336)
|.+ +|+++|++|+|+|+.|+||++|+||||.|||+|+++|+||+|++|+|++|++|||.||+||++++|+|+|+.|+
T Consensus 322 ~~~~~~~Clp~G~~niS~C~~~~pv~~S~PHFy~adp~~~~~v~Gl~P~~e~He~~~dieP~tG~plq~~~RlQiNl~v~ 401 (507)
T KOG3776|consen 322 CTEKKPNCLPSGVLNISQCQGGAPVYLSFPHFYLADPVLVEAVEGLNPNKEKHETYFDIEPKTGTPLQAAKRLQINLPVE 401 (507)
T ss_pred CccccCCCCccCceeehhhcCCCcceecCchhccCCHhHHhcCCCCCCChhhCceEEEeccCCCCeeEEeEEEEEEEEec
Confidence 983 49999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy2112 330 PIESIM 335 (336)
Q Consensus 330 ~~~~i~ 335 (336)
+.++|.
T Consensus 402 ~~~~~~ 407 (507)
T KOG3776|consen 402 PVKGIR 407 (507)
T ss_pred ccCCcc
Confidence 999885
No 3
>KOG3776|consensus
Probab=99.04 E-value=7.9e-11 Score=118.20 Aligned_cols=109 Identities=21% Similarity=0.364 Sum_probs=79.2
Q ss_pred eEEEe-CCccccc-ccCCc--cccccCCcccccCCCCCCCCeEEEeCC--Cccccee--eeeeeccccccCC-ccCcccC
Q psy2112 126 KVYQW-QYTNTTS-FYEGT--CAMVNGTSGTLFPPVRSKQDRVTMYSP--DLCSRTC--QWQYTNTTSFYEG-TCAMVNG 196 (336)
Q Consensus 126 ~i~~w-~~~d~l~-~~~~~--~~~inGt~G~~f~~~~~~~~~l~vf~~--d~cr~~~--~~~~~~~~~~~~~-~Cn~I~G 196 (336)
..++| ||+|++. ..... -.......|.+++.+.+.++.++|+++ |..+... +|+....++||.+ .|++|+|
T Consensus 178 ~e~Lf~GYeDpll~l~~~~~~~~~~~~r~G~~~~~Ngt~d~~y~V~tG~dd~~k~g~I~~wng~~~l~~W~~~~c~~I~G 257 (507)
T KOG3776|consen 178 GELLFDGYEDPLLSLINRFVPIKPPSPRFGLFYGYNGTSDGVYTVNTGKDDISKFGQIDTWNGLTHLPWWETDECNMING 257 (507)
T ss_pred HHHHHhhcccHHHHHHhhcCCcCCcccceeeecccCCCccccEEEecCCCCHHHCeeeeEECCcccCCccCccccccccC
Confidence 34699 9999983 11000 112234579999999999999999986 3333221 4444445899987 8999999
Q ss_pred CcCCccCCCCCCCceEEeeecccccccccCCeeeeEEe
Q psy2112 197 TSGTLFPPVRSKQDRVTMYSPDLCRVESVEGVPGYRFV 234 (336)
Q Consensus 197 tdg~~fpp~l~~~~~l~~f~~~lcr~~~~~gi~~~ry~ 234 (336)
|||++|||+++++++|.+|.+++||++.+.=-....|.
T Consensus 258 tdgs~FpP~l~k~d~l~if~~~~CRsi~l~y~~~~~~~ 295 (507)
T KOG3776|consen 258 TDGSLFPPFLQKEDELYIFSSDLCRSIPLTYSETVTVN 295 (507)
T ss_pred CCcccCCCccCCCCeeEEEchhhhcceEeEeeeEEEEC
Confidence 99999999999999999999999999855322444443
No 4
>PF01130 CD36: CD36 family; InterPro: IPR002159 CD36 is a transmembrane, highly glycosylated, 88kDa glycoprotein expressed by monocytes, macrophages, platelets, microvascular endothelial cells and adipose tissues. Platelet glycoprotein IV (GP IV)(GPIIIb) (CD36 antigen) is also called GPIV, OKM5-antigen or PASIV. CD36 recognises oxidized low density lipoprotein, long chain fatty acids, anionic phospholipids, collagen types I, IV and V, thrombospondin (TSP) and Plasmodium falciparum infected erythrocytes. The recognition of apoptotic neutrophils is in co-operation with TSP and avb3. Other ligands may still be unknown. CD36 is a scavenger receptor for oxidized LDL and shed photoreceptor outer segments and in recognition and phagocytosis of apoptotic cells and is the cell adhesion molecule in platelet adhesion and aggregation, platelet-monocyte and platelet-tumor cell interaction []. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0007155 cell adhesion, 0016020 membrane
Probab=99.03 E-value=1.8e-10 Score=115.87 Aligned_cols=100 Identities=22% Similarity=0.465 Sum_probs=75.4
Q ss_pred eeeEEEe-CCccccc-ccCC----c-ccc-ccCCcccccCCCCCCCCeEEEeCC--Cc---ccceeeeeeeccccccCC-
Q psy2112 124 IGKVYQW-QYTNTTS-FYEG----T-CAM-VNGTSGTLFPPVRSKQDRVTMYSP--DL---CSRTCQWQYTNTTSFYEG- 189 (336)
Q Consensus 124 ~g~i~~w-~~~d~l~-~~~~----~-~~~-inGt~G~~f~~~~~~~~~l~vf~~--d~---cr~~~~~~~~~~~~~~~~- 189 (336)
+...++| ||+|++- .... . .+. -....|.+...+.+.++.++|+++ |. .... .|++...+++|++
T Consensus 166 tv~e~Lf~GY~dpll~~~~~~~~~~~~~~~~~~~fg~~~~~N~t~~~~~~v~TG~~d~~~~g~i~-~~ng~~~l~~w~~~ 244 (467)
T PF01130_consen 166 TVRELLFDGYEDPLLSLAKKLLDFLRPDLIPFDKFGLFYGRNGTYDGVYTVNTGKDDISKVGQID-SWNGSTSLTYWNGE 244 (467)
T ss_pred cHHHhhhccCchHHHHHHhhhhhhcCCccCCCCccccccccCCCCceeEEEECCCCChhhhceee-EECCcccCCCcCCc
Confidence 3445799 9999982 1111 0 011 133478888888888889999986 32 3333 5555556899987
Q ss_pred ccCcccCCcCCccCCCCCCCceEEeeecccccccc
Q psy2112 190 TCAMVNGTSGTLFPPVRSKQDRVTMYSPDLCRVES 224 (336)
Q Consensus 190 ~Cn~I~Gtdg~~fpp~l~~~~~l~~f~~~lcr~~~ 224 (336)
+||+|+||||++|||++++++.|++|++|+||++.
T Consensus 245 ~cn~i~GtdG~~fpP~l~~~~~l~~f~~dlCRs~~ 279 (467)
T PF01130_consen 245 ECNMINGTDGSFFPPFLTKDDTLYVFSSDLCRSLP 279 (467)
T ss_pred cccceeCCccCccCCCCCCCceEEEEehhcceeEE
Confidence 89999999999999999999999999999999985
No 5
>PF04022 Staphylcoagulse: Staphylocoagulase repeat; InterPro: IPR001443 Staphylocoagulase is an extracellular protein produced by several strains of Staphylococcus aureus and which specifically forms a complex with prothrombin [, ]. This complex named staphylothrombin can clot fibrinogen without any proteolytic cleavage of prothrombin. The C terminus of staphylocoagulase contains the tandem repeat which does not seem to be required for the procoagulant activity.
Probab=31.54 E-value=34 Score=20.06 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=11.4
Q ss_pred eceEEccCCeEEEE
Q psy2112 60 VQVKFHDNGTVSYK 73 (336)
Q Consensus 60 ~nv~f~~n~tvsy~ 73 (336)
.||+-|.+|||+|-
T Consensus 13 ynvtt~~dgtvsyg 26 (27)
T PF04022_consen 13 YNVTTNQDGTVSYG 26 (27)
T ss_pred eeeEeccCceEecC
Confidence 47888888999983
No 6
>PF07356 DUF1481: Protein of unknown function (DUF1481); InterPro: IPR010858 This family consists of several hypothetical bacterial proteins of around 230 residues in length. Members of this family are often referred to as YjaH and are found in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.
Probab=19.06 E-value=1.5e+02 Score=26.45 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=14.9
Q ss_pred eceEEccCCeEEEEecee
Q psy2112 60 VQVKFHDNGTVSYKQERR 77 (336)
Q Consensus 60 ~nv~f~~n~tvsy~~~~~ 77 (336)
+-|.|+++|.++|++++.
T Consensus 68 v~lRFd~~G~avfmQr~l 85 (195)
T PF07356_consen 68 VHLRFDKDGEAVFMQRQL 85 (195)
T ss_pred EEEEECCCCCEEEEEEEe
Confidence 358899999999998764
No 7
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=15.75 E-value=50 Score=32.31 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=0.0
Q ss_pred EEeccCCCccCCCCcCCC--CcccCCeEEEeCCCCCCCeeEEEee---eeceEEccCCeEE
Q psy2112 16 YIAYKKLEGFNAYGIPTS--SVKVCPHIVDAAPSIDCQSTSENKE---VVQVKFHDNGTVS 71 (336)
Q Consensus 16 y~F~~~~NvTN~~e~l~~--g~K~~p~v~EvGPy~~~~vY~E~~~---k~nv~f~~n~tvs 71 (336)
||| |+|+++|+-.|..+ -.+ =+.+| | -..... |+.|+|+.|+|+.
T Consensus 59 ym~-~~m~~~n~~gfvy~~~~~~--~k~~~-~-------~s~slr~wwke~v~~~~ng~~~ 108 (354)
T PF04873_consen 59 YMF-PEMELCNAPGFVYTIISSS--GKPVE-G-------VSPSLRAWWKEEVEFDRNGPIQ 108 (354)
T ss_dssp -------------------------------------------------------------
T ss_pred hhc-cccccccCceeeecCCCCC--CCccC-C-------cCCcccchhhhhhhcCcccccc
Confidence 788 99999999999732 122 22333 1 123344 7789999888853
No 8
>smart00218 ZU5 Domain present in ZO-1 and Unc5-like netrin receptors. Domain of unknown function.
Probab=11.91 E-value=1.2e+02 Score=24.37 Aligned_cols=21 Identities=33% Similarity=0.752 Sum_probs=15.8
Q ss_pred CCCCcceeccccCCCcceeeccccccC
Q psy2112 257 CVPSGVINVTSCRFGAPAFVSYPHFYK 283 (336)
Q Consensus 257 c~~~G~~~ls~c~~g~Pi~~S~PHF~~ 283 (336)
|-|.|+. +--|+++++||+-.
T Consensus 67 cGP~G~~------f~~PViL~vPHcA~ 87 (104)
T smart00218 67 CGPHGAL------FLRPVILEVPHCAS 87 (104)
T ss_pred ECCCCCe------EcCCEEEecccccC
Confidence 6666663 45799999999954
No 9
>PF03393 Pneumo_matrix: Pneumovirus matrix protein; InterPro: IPR005056 The matrix proteins of Pneumovirus virus are transcriptional processivity and antitermination factor and play a crucial role in viral assembly.; GO: 0019068 virion assembly, 0019031 viral envelope; PDB: 2VQP_A 2YKD_A.
Probab=11.89 E-value=17 Score=32.78 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=20.4
Q ss_pred CccCCCCcCCC-Cc-ccCCeEEEeCCCCCCCeeEEEeeeeceEEcc
Q psy2112 23 EGFNAYGIPTS-SV-KVCPHIVDAAPSIDCQSTSENKEVVQVKFHD 66 (336)
Q Consensus 23 NvTN~~e~l~~-g~-K~~p~v~EvGPy~~~~vY~E~~~k~nv~f~~ 66 (336)
++||+..+..- |+ - -.+.|+||| +-.|...++--.|+.
T Consensus 205 t~~~~KG~Fk~l~ag~--Q~iveLG~Y----~~~eSi~~v~~nW~H 244 (252)
T PF03393_consen 205 TMNNPKGAFKKLGAGS--QVIVELGAY----VQAESISRVCRNWKH 244 (252)
T ss_dssp E---SSGGGTTS-TT---EEEEE-GGG-----TTS-HHHHHHHEEE
T ss_pred EecCCcchhhhcCCCc--EEEEeccch----hhHHHHHHHHhcccc
Confidence 89999976432 33 2 468999999 877776665555653
No 10
>PF11271 DUF3068: Protein of unknown function (DUF3068); InterPro: IPR021424 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=11.30 E-value=1.9e+02 Score=27.45 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=26.8
Q ss_pred CccCCCCCCCceEEeeeccccccc--------ccCCeeeeEEecC
Q psy2112 200 TLFPPVRSKQDRVTMYSPDLCRVE--------SVEGVPGYRFVGS 236 (336)
Q Consensus 200 ~~fpp~l~~~~~l~~f~~~lcr~~--------~~~gi~~~ry~~~ 236 (336)
..||.+.++ ....+|...+-+.. +++|+++|||+-.
T Consensus 140 ykFPf~tek-~~Y~~fD~~~r~a~p~~f~ge~~v~G~~vY~F~q~ 183 (301)
T PF11271_consen 140 YKFPFDTEK-RSYPYFDPTTRTAVPADFVGEEEVDGREVYRFEQE 183 (301)
T ss_pred EECCCCCCC-CCcccCCcccCcccceEeccceEECCEEEEEEEEE
Confidence 347777665 56888887776653 7899999999854
Done!