Query psy2112
Match_columns 336
No_of_seqs 142 out of 614
Neff 7.3
Searched_HMMs 29240
Date Sat Aug 17 00:34:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mwp_A Amyloid A4 protein; hep 12.6 35 0.0012 25.9 -0.6 12 19-30 50-61 (96)
2 2kxr_A Tight junction protein 11.8 70 0.0024 25.1 0.9 26 257-290 70-95 (118)
3 2vqp_A Matrix protein; viral p 8.9 27 0.00092 30.3 -2.6 38 23-66 206-245 (257)
4 3le4_A Microprocessor complex 7.9 2.4E+02 0.0082 20.2 2.4 26 257-283 28-62 (79)
5 2kxs_A Tight junction protein 7.7 1.1E+02 0.0036 25.0 0.5 45 257-310 84-131 (146)
6 2l0c_A Putative membrane prote 7.7 2E+02 0.0069 21.6 2.1 22 66-87 67-88 (97)
7 3ktm_A Amyloid beta A4 protein 7.0 78 0.0027 26.9 -0.6 6 21-26 63-68 (191)
8 4aeq_A Colicin-M immunity prot 6.9 3E+02 0.01 20.7 2.7 44 23-74 50-97 (98)
9 2das_A Zinc finger MYM-type pr 6.5 3.2E+02 0.011 18.7 2.4 43 196-239 1-45 (62)
10 3ktb_A Arsenical resistance op 5.8 3.5E+02 0.012 20.6 2.6 28 210-237 5-53 (106)
No 1
>1mwp_A Amyloid A4 protein; heparin binding, sugar binding protein; 1.80A {Homo sapiens} SCOP: d.170.2.1
Probab=12.60 E-value=35 Score=25.87 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=9.5
Q ss_pred ccCCCccCCCCc
Q psy2112 19 YKKLEGFNAYGI 30 (336)
Q Consensus 19 ~~~~NvTN~~e~ 30 (336)
||+|+|||..|-
T Consensus 50 YP~l~ItnVvea 61 (96)
T 1mwp_A 50 YPELQITNVVEA 61 (96)
T ss_dssp STTSCEEEEEEC
T ss_pred CCCCccceeEec
Confidence 688999998664
No 2
>2kxr_A Tight junction protein ZO-1; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=11.80 E-value=70 Score=25.06 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=18.0
Q ss_pred CCCCcceeccccCCCcceeeccccccCCChhhhh
Q psy2112 257 CVPSGVINVTSCRFGAPAFVSYPHFYKADPYFAS 290 (336)
Q Consensus 257 c~~~G~~~ls~c~~g~Pi~~S~PHF~~~d~~~~~ 290 (336)
|-|.|+. +.-|+++++||+ |.+.+.+
T Consensus 70 cGP~G~~------F~~PViL~iPHc--a~~~W~~ 95 (118)
T 2kxr_A 70 AGPHGLK------FLKPVELRLPHC--DPKTWQN 95 (118)
T ss_dssp CSSSCCE------EEEEEEEEECCC--CTTSSCS
T ss_pred ECCCCCc------CcCCEEEEcCCC--Cccchhh
Confidence 6677763 346999999999 4455543
No 3
>2vqp_A Matrix protein; viral protein, peripheral membrane Pro RSV, virion, envelope protein; HET: GOL; 1.60A {Human respiratory syncytial virus} PDB: 2ykd_A
Probab=8.88 E-value=27 Score=30.29 Aligned_cols=38 Identities=16% Similarity=0.069 Sum_probs=27.5
Q ss_pred CccCCCCcCCC-Cc-ccCCeEEEeCCCCCCCeeEEEeeeeceEEcc
Q psy2112 23 EGFNAYGIPTS-SV-KVCPHIVDAAPSIDCQSTSENKEVVQVKFHD 66 (336)
Q Consensus 23 NvTN~~e~l~~-g~-K~~p~v~EvGPy~~~~vY~E~~~k~nv~f~~ 66 (336)
++||+.....- |+ - -.+.|+||| +-.|...++--.|+.
T Consensus 206 t~~~~KG~FK~l~ags--Q~iveLG~Y----~~~eSi~~v~~nW~H 245 (257)
T 2vqp_A 206 TVTDNKGAFKYIKPQS--QFIVDLGAY----LEKESIYYVTTNWKH 245 (257)
T ss_dssp ECCCSSGGGTTSCTTC--EEEEECGGG----CTTSCHHHHHHHEEE
T ss_pred EecCCcchHhhcCCCc--EEEEeccch----hhHhHHHHHHhcccc
Confidence 89999975332 33 2 468999999 888877776666764
No 4
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=7.89 E-value=2.4e+02 Score=20.18 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=20.7
Q ss_pred CCCCcceeccccCCCcceee---------ccccccC
Q psy2112 257 CVPSGVINVTSCRFGAPAFV---------SYPHFYK 283 (336)
Q Consensus 257 c~~~G~~~ls~c~~g~Pi~~---------S~PHF~~ 283 (336)
-+|.|-+-++--. |.|+++ |.|.|++
T Consensus 28 ~LPeGW~~v~H~S-GmP~YlH~~trV~T~SrPY~lG 62 (79)
T 3le4_A 28 PLPDGWIMTFHNS-GVPVYLHRESRVVTWSRPYFLG 62 (79)
T ss_dssp CCCTTEEEEECTT-SSEEEEETTTTEEESSCCCCCT
T ss_pred cCCCccEEEEecC-CceEEEeccceEEeccCCeEec
Confidence 4788999888876 999875 7788875
No 5
>2kxs_A Tight junction protein ZO-1, linker, peptide of M enriched ZO-associated protein; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=7.74 E-value=1.1e+02 Score=25.00 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=26.3
Q ss_pred CCCCcceeccccCCCcceeeccccccCCChhhhhcc-ccCCCC--ccCCceeEeeec
Q psy2112 257 CVPSGVINVTSCRFGAPAFVSYPHFYKADPYFASLV-TGMKPE--RDKHEFYLTLEP 310 (336)
Q Consensus 257 c~~~G~~~ls~c~~g~Pi~~S~PHF~~~d~~~~~~v-~Gl~P~--~~~h~~~~~iEP 310 (336)
|-|.|+. +..|+++++||+ |.+.+.+-+ .| +|. .++|...+.++-
T Consensus 84 CGP~G~~------F~kPViL~iPHc--A~~~W~~v~~~g-~~~y~~~~~~~~v~vdh 131 (146)
T 2kxs_A 84 CGPHGLK------FLKPVELRLPHC--DPKTWQNKCLPG-DPNYLVGANCVSVLIDH 131 (146)
T ss_dssp ESSSSEE------EEEEEEEEECCC--CGGGGSCCCCTT-STTTTTTTSCEEEEEEE
T ss_pred ECCCCCc------CcCCEEEEcCcC--CCcCCEEeEeCC-CccEEecCCeEEEEecc
Confidence 5677763 356999999998 455664432 23 221 145555555554
No 6
>2l0c_A Putative membrane protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Salmonella enterica subsp}
Probab=7.68 E-value=2e+02 Score=21.56 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=18.9
Q ss_pred cCCeEEEEeceeeEEecCCCCC
Q psy2112 66 DNGTVSYKQERRWYFDSEYSAG 87 (336)
Q Consensus 66 ~n~tvsy~~~~~~~F~~e~S~~ 87 (336)
|-|+++|+..|..-|.+..+.+
T Consensus 67 D~G~Lt~QGTRfl~Fer~~~~~ 88 (97)
T 2l0c_A 67 DQGTLSYKGTRFVGFVSRTPDN 88 (97)
T ss_dssp CCEEEEEETTEEEEEECSSCGG
T ss_pred CEEEEEEeeeeEEeeecCCCcc
Confidence 5689999999999999987654
No 7
>3ktm_A Amyloid beta A4 protein; protein structure, alzheimer disease, amyloidosis, apoptosis, cell adhesion, copper, disease mutation, disulfi endocytosis; 2.70A {Homo sapiens} PDB: 1owt_A 2fkl_A
Probab=7.01 E-value=78 Score=26.90 Aligned_cols=6 Identities=33% Similarity=0.224 Sum_probs=2.1
Q ss_pred CCCccC
Q psy2112 21 KLEGFN 26 (336)
Q Consensus 21 ~~NvTN 26 (336)
+|+|||
T Consensus 63 el~ItN 68 (191)
T 3ktm_A 63 ELQITN 68 (191)
T ss_dssp TSCEEE
T ss_pred CccccC
Confidence 333333
No 8
>4aeq_A Colicin-M immunity protein; immune system, 3D domain SWAP; 1.89A {Escherichia coli} PDB: 2xgl_A
Probab=6.91 E-value=3e+02 Score=20.73 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=25.3
Q ss_pred CccCCCCcCC---CCcccCCeEEEeCCCCCCCeeEEEeeeeceEEc-cCCeEEEEe
Q psy2112 23 EGFNAYGIPT---SSVKVCPHIVDAAPSIDCQSTSENKEVVQVKFH-DNGTVSYKQ 74 (336)
Q Consensus 23 NvTN~~e~l~---~g~K~~p~v~EvGPy~~~~vY~E~~~k~nv~f~-~n~tvsy~~ 74 (336)
.+-|.++... .+.....-+.--||- . -.+.++.++ ++|||+|.+
T Consensus 50 ~Wvn~~~~~t~~~~~~~~~VPltVRG~k----~----d~~Y~V~vdCk~gti~Ys~ 97 (98)
T 4aeq_A 50 TWEKIERSLTDVEDEKTLLVPFKAEGPD----G----KRMYYGMYHCEEGYVEYAN 97 (98)
T ss_dssp EECCCCCCSSSGGGCCEEEEEEEEECSS----C----EEEEEEEEETTTTEEEEEC
T ss_pred EEecccccccccccCCeEEEEEEEEcCC----C----cEEEEEEEEccCCEEEecC
Confidence 4556666541 122111335556776 2 344567788 899999975
No 9
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=6.49 E-value=3.2e+02 Score=18.72 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=29.6
Q ss_pred CCcCCccCCCCCCC--ceEEeeecccccccccCCeeeeEEecCccc
Q psy2112 196 GTSGTLFPPVRSKQ--DRVTMYSPDLCRVESVEGVPGYRFVGSEYI 239 (336)
Q Consensus 196 Gtdg~~fpp~l~~~--~~l~~f~~~lcr~~~~~gi~~~ry~~~~~~ 239 (336)
|+.|..|.|-.... .++.++++ -|+.+-..|=.+|++......
T Consensus 1 ~~~~~~~~~~~~q~~~~~~~v~C~-~CKk~lqKGQtAyqrkGs~~L 45 (62)
T 2das_A 1 GSSGSSGQPTAQQQLTKPAKITCA-NCKKPLQKGQTAYQRKGSAHL 45 (62)
T ss_dssp CCCCCCCCCCCCCCCSSCSSCBCT-TTCCBCCTTSCCEECTTCCCE
T ss_pred CCCCcccCcccccCCCCccccChh-hccchhhcCceeeeecCchhh
Confidence 56777788876533 46666664 478777789999988755433
No 10
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=5.80 E-value=3.5e+02 Score=20.60 Aligned_cols=28 Identities=14% Similarity=0.409 Sum_probs=22.2
Q ss_pred ceEEeeeccccccc---------------------ccCCeeeeEEecCc
Q psy2112 210 DRVTMYSPDLCRVE---------------------SVEGVPGYRFVGSE 237 (336)
Q Consensus 210 ~~l~~f~~~lcr~~---------------------~~~gi~~~ry~~~~ 237 (336)
..+.||.+.+|=+. +-+|+...||.+..
T Consensus 5 ~~i~ifepamCCstGvCG~~vd~eL~~~~~~~~~lk~~Gi~V~RyNL~~ 53 (106)
T 3ktb_A 5 KKIEIFDPAMCCPTGLCGTNINPELMRIAVVIESLKKQGIIVTRHNLRD 53 (106)
T ss_dssp CCEEEEECSCSSTTSCSSSCCCHHHHHHHHHHHHHHHTTCCCEEEETTT
T ss_pred ceEEEechhhccCCCCcCCCCCHHHHHHHHHHHHHHHCCCEEEEEcccc
Confidence 36899999888652 34899999999874
Done!