Query psy2112
Match_columns 336
No_of_seqs 142 out of 614
Neff 7.3
Searched_HMMs 13730
Date Sat Aug 17 00:34:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2112.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2112hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d0gr3 g.24.1.1 (R:102-128) D 28.5 13 0.00096 19.5 1.5 14 256-270 5-18 (27)
2 d1bdsa_ g.9.1.1 (A:) BDs-I def 17.5 29 0.0021 19.9 1.6 21 259-280 23-43 (43)
3 d1mwpa_ d.170.2.1 (A:) N-termi 16.7 11 0.00078 26.8 -0.6 12 19-30 50-61 (96)
4 d1y29a_ g.3.6.2 (A:) Huwentoxi 8.2 65 0.0047 16.6 1.0 6 257-262 2-7 (28)
5 d1cl4a_ g.40.1.1 (A:) Nucleoca 7.9 1.1E+02 0.008 16.8 1.9 20 186-205 13-32 (32)
6 d1deca_ g.3.15.2 (A:) Decorsin 5.7 78 0.0057 17.5 0.5 12 248-259 12-24 (39)
7 d1ea9c2 b.71.1.1 (C:504-583) M 5.5 2.3E+02 0.017 18.0 3.1 46 271-319 33-78 (80)
8 g1uhe.1 b.52.2.1 (B:,A:) Pyruv 3.4 1.7E+02 0.012 21.0 1.1 17 11-31 39-55 (121)
9 d1dsva_ g.40.1.1 (A:) Nucleic 3.4 1.6E+02 0.012 15.9 0.6 18 187-204 14-31 (31)
10 d1x63a2 g.39.1.3 (A:45-76) Fou 3.3 1.4E+02 0.01 15.8 0.4 15 190-205 4-18 (32)
No 1
>d1d0gr3 g.24.1.1 (R:102-128) Death receptor-5 (dr5) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.53 E-value=13 Score=19.48 Aligned_cols=14 Identities=36% Similarity=0.963 Sum_probs=11.3
Q ss_pred CCCCCcceeccccCC
Q psy2112 256 ECVPSGVINVTSCRF 270 (336)
Q Consensus 256 ~c~~~G~~~ls~c~~ 270 (336)
.| |.|++.++.|.+
T Consensus 5 gc-prg~vkv~dctp 18 (27)
T d1d0gr3 5 GC-PRGMVKVGDCTP 18 (27)
T ss_dssp SC-CTTCEEEECCBT
T ss_pred CC-CCcceEeccCcc
Confidence 46 799999999963
No 2
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=17.47 E-value=29 Score=19.85 Aligned_cols=21 Identities=33% Similarity=0.711 Sum_probs=13.6
Q ss_pred CCcceeccccCCCcceeecccc
Q psy2112 259 PSGVINVTSCRFGAPAFVSYPH 280 (336)
Q Consensus 259 ~~G~~~ls~c~~g~Pi~~S~PH 280 (336)
|-|--=.|.|+ .-|-+...||
T Consensus 23 pggygytsncy-kwpniccyph 43 (43)
T d1bdsa_ 23 PGGYGYTSNCY-KWPNICCYPH 43 (43)
T ss_dssp CTTTCCCCEEE-ETTEEEECCC
T ss_pred CCCcccccccc-cCCcccccCC
Confidence 34444456676 6787777777
No 3
>d1mwpa_ d.170.2.1 (A:) N-terminal domain of the amyloid precursor protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.67 E-value=11 Score=26.85 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=9.6
Q ss_pred ccCCCccCCCCc
Q psy2112 19 YKKLEGFNAYGI 30 (336)
Q Consensus 19 ~~~~NvTN~~e~ 30 (336)
||+|||||..|-
T Consensus 50 YP~l~ItNVVEa 61 (96)
T d1mwpa_ 50 YPELQITNVVEA 61 (96)
T ss_dssp STTSCEEEEEEC
T ss_pred CCccCcceeEec
Confidence 689999997664
No 4
>d1y29a_ g.3.6.2 (A:) Huwentoxin-X {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=8.24 E-value=65 Score=16.64 Aligned_cols=6 Identities=50% Similarity=1.453 Sum_probs=3.0
Q ss_pred CCCCcc
Q psy2112 257 CVPSGV 262 (336)
Q Consensus 257 c~~~G~ 262 (336)
|+|.|-
T Consensus 2 clppgk 7 (28)
T d1y29a_ 2 CLPPGK 7 (28)
T ss_dssp CBCTTC
T ss_pred CcCCCC
Confidence 455553
No 5
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=7.90 E-value=1.1e+02 Score=16.78 Aligned_cols=20 Identities=20% Similarity=0.544 Sum_probs=15.3
Q ss_pred ccCCccCcccCCcCCccCCC
Q psy2112 186 FYEGTCAMVNGTSGTLFPPV 205 (336)
Q Consensus 186 ~~~~~Cn~I~Gtdg~~fpp~ 205 (336)
.|..+|......||.-+||+
T Consensus 13 HWa~~Crsk~~~~G~pl~P~ 32 (32)
T d1cl4a_ 13 HWANECKSKTDNQGNPIPPH 32 (32)
T ss_dssp SCSTTCCCTTSSSSCCCSCC
T ss_pred hHHHHhhhhhccCCCcCCCC
Confidence 37778887777888888774
No 6
>d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=5.70 E-value=78 Score=17.54 Aligned_cols=12 Identities=50% Similarity=1.445 Sum_probs=8.0
Q ss_pred CCCCccC-CCCCC
Q psy2112 248 SNECFCN-GECVP 259 (336)
Q Consensus 248 ~n~c~c~-~~c~~ 259 (336)
..+|.|. ++|+|
T Consensus 12 qekclcnkdecpp 24 (39)
T d1deca_ 12 QEKCLCNKDECPP 24 (39)
T ss_dssp SSCEESSSSEECT
T ss_pred hhhccccCCCCCC
Confidence 4579997 56754
No 7
>d1ea9c2 b.71.1.1 (C:504-583) Maltogenic amylase {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}
Probab=5.46 E-value=2.3e+02 Score=17.97 Aligned_cols=46 Identities=11% Similarity=0.020 Sum_probs=29.9
Q ss_pred CcceeeccccccCCChhhhhccccCCCCccCCceeEeeeccCCccceee
Q psy2112 271 GAPAFVSYPHFYKADPYFASLVTGMKPERDKHEFYLTLEPSTGIPLDVG 319 (336)
Q Consensus 271 g~Pi~~S~PHF~~~d~~~~~~v~Gl~P~~~~h~~~~~iEP~tG~~l~~~ 319 (336)
+.|.-+++|- ++..+.+-+.|=.-..+.-...+.+.|..+..|++.
T Consensus 33 ~~~~tv~lp~---~~~~~~~l~~g~~~~~~~~~~tltLpp~~~~il~a~ 78 (80)
T d1ea9c2 33 KAGHTLTLPV---RHAQWTHLWQDDVLTAAHGQLTVKLPAYGFAVLKAS 78 (80)
T ss_dssp SSCEEEEEEC---CSSSCCEEBSTTCCEECCCSSEEEEEECSSCCCEEC
T ss_pred CCCEEEEecC---CCCeEEEeecCceeeccCCcEEEEECCccEEEEEEe
Confidence 3567777772 345666666663222233344799999999999875
No 8
>g1uhe.1 b.52.2.1 (B:,A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Helicobacter pylori [TaxId: 210]}
Probab=3.41 E-value=1.7e+02 Score=21.05 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=12.0
Q ss_pred ceEEEEEeccCCCccCCCCcC
Q psy2112 11 KSLNFYIAYKKLEGFNAYGIP 31 (336)
Q Consensus 11 ~~~~~y~F~~~~NvTN~~e~l 31 (336)
.+=+|.++ |+||-++|.
T Consensus 39 p~E~V~V~----N~~NG~Rf~ 55 (121)
T g1uhe.1 39 EGMKVEIV----DVNNGERFS 55 (121)
T ss_dssp TTCEEEEE----ETTTCCEEE
T ss_pred CCCEEEEE----ECCCCeEEE
Confidence 34577888 888877764
No 9
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=3.35 E-value=1.6e+02 Score=15.94 Aligned_cols=18 Identities=22% Similarity=0.615 Sum_probs=11.0
Q ss_pred cCCccCcccCCcCCccCC
Q psy2112 187 YEGTCAMVNGTSGTLFPP 204 (336)
Q Consensus 187 ~~~~Cn~I~Gtdg~~fpp 204 (336)
|..+|......||.-+||
T Consensus 14 Wa~~Crsk~~~~G~pl~P 31 (31)
T d1dsva_ 14 WKSECKSKFDKDGNPLPP 31 (31)
T ss_dssp CTTTCCCSEEGGGEECCC
T ss_pred HHHHhhhhhccCCCCCcc
Confidence 666776655566655554
No 10
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.31 E-value=1.4e+02 Score=15.83 Aligned_cols=15 Identities=47% Similarity=0.913 Sum_probs=8.2
Q ss_pred ccCcccCCcCCccCCC
Q psy2112 190 TCAMVNGTSGTLFPPV 205 (336)
Q Consensus 190 ~Cn~I~Gtdg~~fpp~ 205 (336)
.|..+-|| |++||-+
T Consensus 4 ~ckq~igs-gsffpkg 18 (32)
T d1x63a2 4 NCKQVIGT-GSFFPKG 18 (32)
T ss_dssp SSCCCCTT-SCEEEET
T ss_pred hhhhhccc-ccccCCC
Confidence 45555554 5666654
Done!