RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2112
         (336 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 19/47 (40%)

Query: 10 KKSLNFYIAYKKLEGFNAYGIPTSSVKV-CPHIVDAAPSIDCQSTSE 55
          K++L      KKL+         +S+K+      D+AP++  ++T E
Sbjct: 19 KQAL------KKLQ---------ASLKLYAD---DSAPALAIKATME 47



 Score = 28.4 bits (62), Expect = 2.2
 Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 4/26 (15%)

Query: 205 VRSKQDRVTMYSPD----LCRVESVE 226
           ++  Q  + +Y+ D    L    ++E
Sbjct: 22  LKKLQASLKLYADDSAPALAIKATME 47



 Score = 28.0 bits (61), Expect = 2.7
 Identities = 3/14 (21%), Positives = 8/14 (57%)

Query: 157 VRSKQDRVTMYSPD 170
           ++  Q  + +Y+ D
Sbjct: 22  LKKLQASLKLYADD 35


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.5 bits (76), Expect = 0.11
 Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 31/111 (27%)

Query: 78   W-----YFDSEYSAG-SLKDNVTTLNAVVVRNGSDQFDGHFNIDTGQNGIHNIGKVYQWQ 131
            W     +F   Y  G S+ D        +V N       HF    G+ G   I + Y   
Sbjct: 1646 WNRADNHFKDTY--GFSILD--------IVINNPVNLTIHF---GGEKG-KRIRENYS-- 1689

Query: 132  YTNTTSFYEGTCAMVNGTSGTLFPPVRSKQDRVTMYSP-DLCSRTCQWQYT 181
                   +E T       +  +F  +       T  S   L S T   Q+T
Sbjct: 1690 ----AMIFE-TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT---QFT 1732


>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
           heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
           c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
          Length = 294

 Score = 28.7 bits (64), Expect = 2.9
 Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 17/107 (15%)

Query: 55  ENKEVVQVKFHDNGTVSYKQERRWYFDSEYSAGSLKD-------NVTTLNAVVVRNGSDQ 107
             KE+++         +   E   +    +S  S           ++ ++A +     DQ
Sbjct: 139 LGKELLKGSLRFT---ASPLEEERFGFPAFSGISRLTWLVSLFGELSLISATLEERKEDQ 195

Query: 108 FDG-HFNIDTGQNGIHNIGKVYQWQYTNTTSFYEGTCAMVNGTSGTL 153
           +      ++T   G+        W                  TSG+L
Sbjct: 196 YMKMTVQLETQNKGL------LSWIEEKGPGLKRNRYVNFQFTSGSL 236


>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer,
           domain swapping, phosphate-binding, coiled coil,
           exocytosis; 2.00A {Saccharomyces cerevisiae}
          Length = 171

 Score = 26.9 bits (59), Expect = 8.4
 Identities = 13/86 (15%), Positives = 21/86 (24%), Gaps = 26/86 (30%)

Query: 50  CQSTSENKEVVQVKFHDNGTVSYKQERRWYFDSEYSAGSLKDNVTTLNAV-VVRNGSDQF 108
               +  K +   K  +N   S++  R W                 L  V      S+ F
Sbjct: 72  SAKPNNAKLIQIHKARENSDGSFQIGRTWQLT-------------ELVRVEKDLEISEGF 118

Query: 109 DGHFNIDTGQNGIHNIGKVYQWQYTN 134
                            K Y W+  +
Sbjct: 119 ILTM------------SKKYYWETNS 132


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0570    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,111,736
Number of extensions: 296110
Number of successful extensions: 595
Number of sequences better than 10.0: 1
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 8
Length of query: 336
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 242
Effective length of database: 4,077,219
Effective search space: 986686998
Effective search space used: 986686998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)