RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2112
         (336 letters)



>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2)
          {Cryptosporidium parvum [TaxId: 5807]}
          Length = 117

 Score = 25.6 bits (56), Expect = 4.2
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 7/45 (15%)

Query: 36 KVCPHIVDAAPSIDCQSTSENKEVVQVKFHDNGTVSYKQERRWYF 80
          +     +     +DCQ +  N  +V V     G V     +   F
Sbjct: 56 QRVQFEIT---RVDCQPSPNNGSIVFVT----GDVRIDDGQPLKF 93


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,285,693
Number of extensions: 60151
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 7
Length of query: 336
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,226,816
Effective search space: 306704000
Effective search space used: 306704000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)