BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2113
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
+ TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK +
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGIS 72
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
V WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG
Sbjct: 73 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 163 DNSVRVFKTK 172
D SVR++ K
Sbjct: 131 DESVRIWDVK 140
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 116
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ + L + H D V V+++ D I+S D
Sbjct: 117 NFNP-QSNLIVSGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 165 SVRVFKT 171
R++ T
Sbjct: 175 LCRIWDT 181
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK------TLPAHSDPVS 156
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 157 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 163 DNSVRVF 169
DN+++++
Sbjct: 216 DNTLKLW 222
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 210 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM 263
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 264 VYIWNLQTKEI-VQKLQGHTDVVI 286
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
+ TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK +
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGIS 72
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
V WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG
Sbjct: 73 DVAWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 163 DNSVRVFKTK 172
D SVR++ K
Sbjct: 131 DESVRIWDVK 140
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 116
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ + L + H D V V+++ D I+S D
Sbjct: 117 NFNP-QSNLIVSGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 165 SVRVFKT 171
R++ T
Sbjct: 175 LCRIWDT 181
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 45 LITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TL H + +SAV + I++SS+D +IWD G +K+ V
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-----SGQCLKTLIDDDNPPVS 199
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCV--NWS--DYRYIMS 159
V++SP + + ++A+ DN +KLWD K L GH+++ C+ N+S ++I+S
Sbjct: 200 FVKFSP-NGKYILAATLDNDLKLWDYSKGKC-LKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 160 GGQDNSVRVF 169
G +DN V ++
Sbjct: 258 GSEDNMVYIW 267
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK------TLPAHSDPVS 156
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 157 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 163 DNSVRVF 169
DN ++++
Sbjct: 216 DNDLKLW 222
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+ LK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 210 ILAATLDNDLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM 263
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 264 VYIWNLQTKEI-VQKLQGHTDVVI 286
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 46 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 73
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQD 163
V WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 74 VAWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 164 NSVRVFKTK 172
SVR++ K
Sbjct: 132 ESVRIWDVK 140
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 116
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 117 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 165 SVRVFKT 171
R++ T
Sbjct: 175 LCRIWDT 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 156
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 157 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 163 DNSVRV 168
DN++++
Sbjct: 216 DNTLKL 221
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 210 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 263
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGG---QDNSVRVFKT 171
V +W+L++ ++ + + GH D V+ I++ D +++++K+
Sbjct: 264 VYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKS 313
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 46 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 73
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQD 163
V WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 74 VAWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 164 NSVRVFKTK 172
SVR++ K
Sbjct: 132 ESVRIWDVK 140
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 116
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 117 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 165 SVRVFKT 171
R++ T
Sbjct: 175 LCRIWDT 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 156
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 157 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 163 DNSVRV 168
DN++++
Sbjct: 216 DNTLKL 221
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 210 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 263
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGG---QDNSVRVFKT 171
V +W+L++ ++ + + GH D V+ I++ D ++++FK+
Sbjct: 264 VYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFKS 313
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK + V
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISDV 76
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 77 AWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 165 SVRVFKTK 172
SVR++ K
Sbjct: 135 SVRIWDVK 142
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 65 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 118
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 119 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 165 SVRVFKT 171
R++ T
Sbjct: 177 LCRIWDT 183
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 158
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 159 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 217
Query: 163 DNSVRVF 169
DN+++++
Sbjct: 218 DNTLKLW 224
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 212 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 265
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 266 VYIWNLQTKEI-VQKLQGHTDVVI 288
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK + V
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISDV 77
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 78 AWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 165 SVRVFKTK 172
SVR++ K
Sbjct: 136 SVRIWDVK 143
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 119
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 120 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 165 SVRVFKT 171
R++ T
Sbjct: 178 LCRIWDT 184
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 159
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 160 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 218
Query: 163 DNSVRVF 169
DN+++++
Sbjct: 219 DNTLKLW 225
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 213 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 267 VYIWNLQTKEI-VQKLQGHTDVVI 289
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 46 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK +
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 94
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQD 163
V WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 95 VAWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFD 152
Query: 164 NSVRVFKTK 172
SVR++ K
Sbjct: 153 ESVRIWDVK 161
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + +++S D TLKIWD G K T H +V
Sbjct: 84 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 137
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 138 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 165 SVRVFKT 171
R++ T
Sbjct: 196 LCRIWDT 202
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 177
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 178 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 236
Query: 163 DNSVRV 168
DN++++
Sbjct: 237 DNTLKL 242
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 231 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 284
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 285 VYIWNLQTKEI-VQKLQGHTDVVI 307
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK + V
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISDV 77
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 78 AWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 165 SVRVFKTK 172
SVR++ K
Sbjct: 136 SVRIWDVK 143
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 119
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 120 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 165 SVRVFKT 171
R++ T
Sbjct: 178 LCRIWDT 184
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 159
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 160 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 218
Query: 163 DNSVRVF 169
DN+++++
Sbjct: 219 DNTLKLW 225
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 213 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 267 VYIWNLQTKEI-VQKLQGHTDVVI 289
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 46 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK +
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 92
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQD 163
V WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 93 VAWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 164 NSVRVFKTK 172
SVR++ K
Sbjct: 151 ESVRIWDVK 159
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + +++S D TLKIWD G K T H +V
Sbjct: 82 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 135
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 136 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 165 SVRVFKT 171
R++ T
Sbjct: 194 LCRIWDT 200
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 175
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 176 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 234
Query: 163 DNSVRV 168
DN++++
Sbjct: 235 DNTLKL 240
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 229 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 282
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGG---QDNSVRVFKT 171
V +W+L++ ++ + + GH D V+ I++ D +++++K+
Sbjct: 283 VYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 332
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 46 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 76
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQD 163
V WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 77 VAWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 164 NSVRVFKTK 172
SVR++ K
Sbjct: 135 ESVRIWDVK 143
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 119
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 120 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 165 SVRVFKT 171
R++ T
Sbjct: 178 LCRIWDT 184
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 159
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 160 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 218
Query: 163 DNSVRV 168
DN++++
Sbjct: 219 DNTLKL 224
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 213 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 267 VYIWNLQTKEI-VQKLQGHTDVVI 289
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 46 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK +
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 87
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQD 163
V WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 88 VAWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFD 145
Query: 164 NSVRVFKTK 172
SVR++ K
Sbjct: 146 ESVRIWDVK 154
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 77 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 130
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 131 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 165 SVRVFKT 171
R++ T
Sbjct: 189 LCRIWDT 195
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 170
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 171 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 229
Query: 163 DNSVRV 168
DN++++
Sbjct: 230 DNTLKL 235
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 224 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 277
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 278 VYIWNLQTKEI-VQKLQGHTDVVI 300
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK + V
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISDV 70
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 71 AWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 165 SVRVFKTK 172
SVR++ K
Sbjct: 129 SVRIWDVK 136
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 59 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 112
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 113 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 165 SVRVFKT 171
R++ T
Sbjct: 171 LCRIWDT 177
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 152
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 153 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 211
Query: 163 DNSVRVF 169
DN+++++
Sbjct: 212 DNTLKLW 218
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 206 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 259
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 260 VYIWNLQTKEI-VQKLQGHTDVVI 282
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK + V
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISDV 71
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 72 AWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 165 SVRVFKTK 172
SVR++ K
Sbjct: 130 SVRIWDVK 137
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 113
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 114 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 165 SVRVFKT 171
R++ T
Sbjct: 172 LCRIWDT 178
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 153
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 154 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 212
Query: 163 DNSVRVF 169
DN+++++
Sbjct: 213 DNTLKLW 219
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 207 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 260
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 261 VYIWNLQTKEI-VQKLQGHTDVVI 283
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK + V
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISDV 72
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 73 AWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 165 SVRVFKTK 172
SVR++ K
Sbjct: 131 SVRIWDVK 138
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + +++S D TLKIWD G K T H +V
Sbjct: 61 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 114
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 115 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 165 SVRVFKT 171
R++ T
Sbjct: 173 LCRIWDT 179
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 154
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 155 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 213
Query: 163 DNSVRVF 169
DN+++++
Sbjct: 214 DNTLKLW 220
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 208 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 261
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 262 VYIWNLQTKEI-VQKLQGHTDVVI 284
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK + V
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISDV 71
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 72 AWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 165 SVRVFKTK 172
SVR++ K
Sbjct: 130 SVRIWDVK 137
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 113
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 114 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 165 SVRVFKT 171
R++ T
Sbjct: 172 LCRIWDT 178
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 153
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 154 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 212
Query: 163 DNSVRVF 169
DN+++++
Sbjct: 213 DNTLKLW 219
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 207 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 260
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 261 VYIWNLQTKEI-VQKLQGHTDVVI 283
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TL GH +A+S+V+++ E + +SS D +KIW A G +K T S HK + V
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------TISGHKLGISDV 67
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 68 AWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 165 SVRVFKTK 172
SVR++ K
Sbjct: 126 SVRIWDVK 133
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 56 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 109
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 110 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 165 SVRVFKT 171
R++ T
Sbjct: 168 LCRIWDT 174
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 149
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 150 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 208
Query: 163 DNSVRVF 169
DN+++++
Sbjct: 209 DNTLKLW 215
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 203 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 256
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 257 VYIWNLQTKEI-VQKLQGHTDVVI 279
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 10/129 (7%)
Query: 46 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
TL GH +A+S+V+++ E + SS D +KIW A G +K T S HK +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK------TISGHKLGISD 73
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQD 163
V WS D L VSAS D ++K+WD+ S K L + GH + V C N++ I+SG D
Sbjct: 74 VAWSS-DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 164 NSVRVFKTK 172
SVR++ K
Sbjct: 132 ESVRIWDVK 140
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GHK IS V W++ + ++++S D TLKIWD G K T H +V
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK------TLKGHSNYVFCC 116
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
++P L VS SFD SV++WD+++ K L + H D V V+++ D I+S D
Sbjct: 117 NFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 165 SVRVFKT 171
R++ T
Sbjct: 175 LCRIWDT 181
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TLKGH + + +I S S+D +++IWD + G K T +H + V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK------TLPAHSDPVS 156
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+V ++ D L VS+S+D ++WD S + + V V +S + +YI++
Sbjct: 157 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 163 DNSVRV 168
DN++++
Sbjct: 216 DNTLKL 221
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNS 123
I+ ++ D+TLK+WD KG +K T++ HK ++ +S + VS S DN
Sbjct: 210 ILAATLDNTLKLWD-----YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 263
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVM 147
V +W+L++ ++ + + GH D V+
Sbjct: 264 VYIWNLQTKEI-VQKLQGHTDVVI 286
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 48 LKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKKGAIVKSTF-SSHKEWVQS 104
L GHK S+ Q+ E +IT S D T +WD G ++ +I S F S H V S
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG--QRISIFGSEFPSGHTADVLS 210
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN-WSDYRYIMSGGQD 163
+ + ++ +F+S S D +V+LWDLR + GHE + V + D + +G D
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270
Query: 164 NSVRVF--KTKHQ 174
+ R+F +T HQ
Sbjct: 271 GTCRLFDMRTGHQ 283
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TL+GH + ++ WT I+++S D L +W+A L K AI H WV
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNA-LTSQKTHAI-----KLHCPWVMEC 114
Query: 106 RWSPIDPQLFVSASFDNSVKLWDL-----RSPKVPLFDML-GHE 143
++P + Q D++ +++L R +P+ +L GH+
Sbjct: 115 AFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK 157
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 11/130 (8%)
Query: 44 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
P L+GH +S V + +++SWDH+L++W+ + G + F H + V
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQY------KFLGHTKDV 112
Query: 103 QSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS---DYRYIMS 159
SV +SP + Q+ VS DN++++W+++ + H D V CV +S D I+S
Sbjct: 113 LSVAFSPDNRQI-VSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 160 GGQDNSVRVF 169
GG DN V+V+
Sbjct: 172 GGWDNLVKVW 181
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 50 GHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGMKKGAIVKS-TFSSHKEWVQSVRW 107
GH + + +V ++ + +I++ D+ L++W+ KG + + + +H +WV VR+
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV------KGECMHTLSRGAHTDWVSCVRF 160
Query: 108 SP-IDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNS 165
SP +D + VS +DN VK+WDL + ++ + D+ GH + V V S D S +D
Sbjct: 161 SPSLDAPVIVSGGWDNLVKVWDLATGRL-VTDLKGHTNYVTSVTVSPDGSLCASSDKDGV 219
Query: 166 VRVF 169
R++
Sbjct: 220 ARLW 223
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 48 LKGHKEAISAVQWTAVDE----IITSSWDHTLKIW----DAELGGMKKGAIVKSTFSSHK 99
L GH+ ++++ E ++++S D TL W D G + H
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYG-LPDRRLEGHS 67
Query: 100 EWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIM 158
+V V S + VSAS+D+S++LW+L++ + + LGH V+ V +S D R I+
Sbjct: 68 AFVSDVALSN-NGNFAVSASWDHSLRLWNLQNGQCQ-YKFLGHTKDVLSVAFSPDNRQIV 125
Query: 159 SGGQDNSVRVFKTKHQ 174
SGG+DN++RV+ K +
Sbjct: 126 SGGRDNALRVWNVKGE 141
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 12/121 (9%)
Query: 48 LKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRW 107
L GH+ A++ V + I+++S D T+K+W+ + T + HK + +++
Sbjct: 252 LVGHRAAVNVVDFDD-KYIVSASGDRTIKVWNTSTCEFVR------TLNGHKRGIACLQY 304
Query: 108 SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVR 167
+L VS S DN+++LWD+ L + GHE+ V C+ + + R I+SG D ++
Sbjct: 305 RD---RLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRFDNKR-IVSGAYDGKIK 359
Query: 168 V 168
V
Sbjct: 360 V 360
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 17/128 (13%)
Query: 48 LKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
L GH ++ +Q+ DE IIT S D T+++WD G M +T H E V +
Sbjct: 169 LTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEM------LNTLIHHCEAVLHL 219
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSP-KVPLFDML-GHEDKVMCVNWSDYRYIMSGGQD 163
R+ + + V+ S D S+ +WD+ SP + L +L GH V V++ D +YI+S D
Sbjct: 220 RF---NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-KYIVSASGD 275
Query: 164 NSVRVFKT 171
+++V+ T
Sbjct: 276 RTIKVWNT 283
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRV 168
D Q VS DN++K+WD + + + GH V+C+ + D R I++G D++VRV
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRI-LTGHTGSVLCLQY-DERVIITGSSDSTVRV 197
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 41 QKTPLITLKGHKEAISAVQWTA--VDEIITSSWDHTLKIWDAELGGMKKGAIV--KSTFS 96
+ P + L+GH++ + W + ++++S DHT+ +WD G K+G IV K+ F+
Sbjct: 168 ECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDIN-AGPKEGKIVDAKAIFT 226
Query: 97 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV--PLFDMLGHEDKVMCVNWSDY 154
H V+ V W + LF S + D + +WD RS P + H +V C++++ Y
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 155 -RYIMSGG 161
+I++ G
Sbjct: 287 SEFILATG 294
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 44 PLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
P + H ++ + + E I T S D T+ +WD ++ + TF SHK+
Sbjct: 267 PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-----LRNLKLKLHTFESHKDE 321
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLR-------------SPKVPLFDMLGHEDKVMC 148
+ V WSP + + S+ D + +WDL P LF GH K+
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 149 VNWSDYR--YIMSGGQDNSVRVFK 170
+W+ I S +DN ++++
Sbjct: 382 FSWNPNEPWVICSVSEDNIXQIWQ 405
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDAELGGMKKGAIVKST----- 94
K L T + HK+ I V W+ +E I +S D L +WD G ++ A
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 95 ---FSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 127
H + W+P +P + S S DN ++W
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 41 QKTPLITLKGHKEAISAVQWTA--VDEIITSSWDHTLKIWDAELGGMKKGAIV--KSTFS 96
+ P + L+GH++ + W + ++++S DHT+ +WD G K+G IV K+ F+
Sbjct: 168 ECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDIN-AGPKEGKIVDAKAIFT 226
Query: 97 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV--PLFDMLGHEDKVMCVNWSDY 154
H V+ V W + LF S + D + +WD RS P + H +V C++++ Y
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 155 -RYIMSGG 161
+I++ G
Sbjct: 287 SEFILATG 294
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 22/144 (15%)
Query: 44 PLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
P + H ++ + + E I T S D T+ +WD ++ + TF SHK+
Sbjct: 267 PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-----LRNLKLKLHTFESHKDE 321
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLR-------------SPKVPLFDMLGHEDKVMC 148
+ V WSP + + S+ D + +WDL P LF GH K+
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 149 VNWSDYR--YIMSGGQDNSVRVFK 170
+W+ I S +DN +++++
Sbjct: 382 FSWNPNEPWVICSVSEDNIMQIWQ 405
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDAELGGMKKGAIVKST----- 94
K L T + HK+ I V W+ +E I +S D L +WD G ++ A
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 95 ---FSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129
H + W+P +P + S S DN +++W +
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 9/107 (8%)
Query: 47 TLKGHKEAISAVQ-WTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
T+ GH +S+V D I+++S D T+K+W+ + G K TF+ H+EWV+ V
Sbjct: 187 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK------TFTGHREWVRMV 240
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152
R + D L S S D +V++W + + + ++ H V C++W+
Sbjct: 241 RPNQ-DGTLIASCSNDQTVRVWVVATKECKA-ELREHRHVVECISWA 285
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 48 LKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVR 106
L GH+ ++ V + V + +++S D T+K+WD E G ++ T H + VQ +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER------TLKGHTDSVQDIS 157
Query: 107 WSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN-WSDYRYIMSGGQDNS 165
+ +L S S D ++KLWD + + + M GH+ V V+ + +I+S +D +
Sbjct: 158 FDH-SGKLLASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 215
Query: 166 VRVFKTK 172
+++++ +
Sbjct: 216 IKMWEVQ 222
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+++ S D T+K+WD G + T H WV+ V + + +S + D +++
Sbjct: 311 LLSGSRDKTIKMWDVSTG------MCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLR 363
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYR-YIMSGGQDNSVRVFKTK 172
+WD ++ + + + HE V +++ Y+++G D +V+V++ +
Sbjct: 364 VWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 27 IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA--VDEIITSSWDHTLKIWDAELGG 84
+ T PS + P + L+GH++ + W ++++S DHT+ +WD
Sbjct: 152 FDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDIS-AV 210
Query: 85 MKKGAIV--KSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV--PLFDML 140
K+G +V K+ F+ H V+ V W + LF S + D + +WD RS P +
Sbjct: 211 PKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD 270
Query: 141 GHEDKVMCVNWSDY-RYIMSGG 161
H +V C++++ Y +I++ G
Sbjct: 271 AHTAEVNCLSFNPYSEFILATG 292
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 28 EVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSW--DHTLKIWDAELGGM 85
+++++P +++ KT GH + V W + E + S D L IWD
Sbjct: 206 DISAVPKEGKVVDAKT---IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNT 262
Query: 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDK 145
K + + +H V + ++P + + S D +V LWDLR+ K+ L H+D+
Sbjct: 263 SKPS---HSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 319
Query: 146 VMCVNWSDYRY--IMSGGQDNSVRVF 169
+ V WS + + S G D + V+
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVW 345
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 22/144 (15%)
Query: 44 PLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
P ++ H ++ + + E I T S D T+ +WD ++ + +F SHK+
Sbjct: 265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-----LRNLKLKLHSFESHKDE 319
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLR-------------SPKVPLFDMLGHEDKVMC 148
+ V+WSP + + S+ D + +WDL P LF GH K+
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379
Query: 149 VNWSDYR--YIMSGGQDNSVRVFK 170
+W+ I S +DN ++V++
Sbjct: 380 FSWNPNEPWVICSVSEDNIMQVWQ 403
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWD-AELGGMKKGAIVKS----- 93
K L + + HK+ I VQW+ +E I +S D L +WD +++G + +
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPEL 366
Query: 94 --TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129
H + W+P +P + S S DN +++W +
Sbjct: 367 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 20/144 (13%)
Query: 44 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
P L GH +S + + + I+SSWD TL++WD G K F H+ V
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK------RFVGHQSEV 121
Query: 103 QSVRWSPIDPQLFVSASFDNSVKLWD-LRSPKVPLFDMLGHEDKVMCVNWSDYR------ 155
SV +SP + Q+ +SA + +KLW+ L K + H D V CV +S
Sbjct: 122 YSVAFSPDNRQI-LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180
Query: 156 -----YIMSGGQDNSVRVFKTKHQ 174
Y S G D ++V+ T Q
Sbjct: 181 QPFAPYFASVGWDGRLKVWNTNFQ 204
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 10/146 (6%)
Query: 28 EVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSW--DHTLKIWDAELGGM 85
++ + P ++I K GH + V W + E + S D L IWD
Sbjct: 214 DINATPKEHRVIDAKN---IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 270
Query: 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDK 145
K + T +H V + ++P + + S D +V LWDLR+ K+ L H+D+
Sbjct: 271 SKPS---HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 327
Query: 146 VMCVNWSDYRY--IMSGGQDNSVRVF 169
+ V WS + + S G D + V+
Sbjct: 328 IFQVQWSPHNETILASSGTDRRLHVW 353
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 27 IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGG 84
+ T PS + + P + L+GH++ + W ++++S DHT+ +WD
Sbjct: 160 FDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP 219
Query: 85 MKKGAI-VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV--PLFDMLG 141
+ I K+ F+ H V+ V W + LF S + D + +WD R+ P +
Sbjct: 220 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 279
Query: 142 HEDKVMCVNWSDY-RYIMSGG 161
H +V C++++ Y +I++ G
Sbjct: 280 HTAEVNCLSFNPYSEFILATG 300
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 22/144 (15%)
Query: 44 PLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
P T+ H ++ + + E I T S D T+ +WD ++ + +F SHK+
Sbjct: 273 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-----LRNLKLKLHSFESHKDE 327
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLR-------------SPKVPLFDMLGHEDKVMC 148
+ V+WSP + + S+ D + +WDL P LF GH K+
Sbjct: 328 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 387
Query: 149 VNWSDYR--YIMSGGQDNSVRVFK 170
+W+ I S +DN ++V++
Sbjct: 388 FSWNPNEPWIICSVSEDNIMQVWQ 411
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWD-AELGGMKKGAIVKS----- 93
K L + + HK+ I VQW+ +E I +S D L +WD +++G + +
Sbjct: 315 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 374
Query: 94 --TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129
H + W+P +P + S S DN +++W +
Sbjct: 375 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 10/146 (6%)
Query: 28 EVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSW--DHTLKIWDAELGGM 85
++ + P ++I K GH + V W + E + S D L IWD
Sbjct: 212 DINATPKEHRVIDAKN---IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 268
Query: 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDK 145
K + T +H V + ++P + + S D +V LWDLR+ K+ L H+D+
Sbjct: 269 SKPS---HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 325
Query: 146 VMCVNWSDYRY--IMSGGQDNSVRVF 169
+ V WS + + S G D + V+
Sbjct: 326 IFQVQWSPHNETILASSGTDRRLHVW 351
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 27 IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGG 84
+ T PS + + P + L+GH++ + W ++++S DHT+ +WD
Sbjct: 158 FDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP 217
Query: 85 MKKGAI-VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV--PLFDMLG 141
+ I K+ F+ H V+ V W + LF S + D + +WD R+ P +
Sbjct: 218 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 277
Query: 142 HEDKVMCVNWSDY-RYIMSGG 161
H +V C++++ Y +I++ G
Sbjct: 278 HTAEVNCLSFNPYSEFILATG 298
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 22/144 (15%)
Query: 44 PLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
P T+ H ++ + + E I T S D T+ +WD ++ + +F SHK+
Sbjct: 271 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-----LRNLKLKLHSFESHKDE 325
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLR-------------SPKVPLFDMLGHEDKVMC 148
+ V+WSP + + S+ D + +WDL P LF GH K+
Sbjct: 326 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 385
Query: 149 VNWSDYR--YIMSGGQDNSVRVFK 170
+W+ I S +DN ++V++
Sbjct: 386 FSWNPNEPWIICSVSEDNIMQVWQ 409
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWD-AELGGMKKGAIVKS----- 93
K L + + HK+ I VQW+ +E I +S D L +WD +++G + +
Sbjct: 313 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 372
Query: 94 --TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL-------RSPKVPLFDM 139
H + W+P +P + S S DN +++W + P++P ++
Sbjct: 373 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASEL 427
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 10/146 (6%)
Query: 28 EVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSW--DHTLKIWDAELGGM 85
++ + P ++I K GH + V W + E + S D L IWD
Sbjct: 210 DINATPKEHRVIDAKN---IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266
Query: 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDK 145
K + T +H V + ++P + + S D +V LWDLR+ K+ L H+D+
Sbjct: 267 SKPS---HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 323
Query: 146 VMCVNWSDYRY--IMSGGQDNSVRVF 169
+ V WS + + S G D + V+
Sbjct: 324 IFQVQWSPHNETILASSGTDRRLHVW 349
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 27 IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGG 84
+ T PS + + P + L+GH++ + W ++++S DHT+ +WD
Sbjct: 156 FDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP 215
Query: 85 MKKGAI-VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV--PLFDMLG 141
+ I K+ F+ H V+ V W + LF S + D + +WD R+ P +
Sbjct: 216 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275
Query: 142 HEDKVMCVNWSDY-RYIMSGG 161
H +V C++++ Y +I++ G
Sbjct: 276 HTAEVNCLSFNPYSEFILATG 296
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 22/144 (15%)
Query: 44 PLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
P T+ H ++ + + E I T S D T+ +WD ++ + +F SHK+
Sbjct: 269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-----LRNLKLKLHSFESHKDE 323
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLR-------------SPKVPLFDMLGHEDKVMC 148
+ V+WSP + + S+ D + +WDL P LF GH K+
Sbjct: 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 383
Query: 149 VNWSDYR--YIMSGGQDNSVRVFK 170
+W+ I S +DN ++V++
Sbjct: 384 FSWNPNEPWIICSVSEDNIMQVWQ 407
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWD-AELGGMKKGAIVKS----- 93
K L + + HK+ I VQW+ +E I +S D L +WD +++G + +
Sbjct: 311 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370
Query: 94 --TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL-------RSPKVPLFDM 139
H + W+P +P + S S DN +++W + P++P ++
Sbjct: 371 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASEL 425
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 48 LKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRW 107
L GH +S ++ ++I+TSS D T +WD E +TF+ H V S+
Sbjct: 150 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET------GQQTTTFTGHTGDVMSLSL 203
Query: 108 SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN-WSDYRYIMSGGQDNSV 166
+P D +LFVS + D S KLWD+R GHE + + + + +G D +
Sbjct: 204 AP-DTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATC 261
Query: 167 RVFKTK 172
R+F +
Sbjct: 262 RLFDLR 267
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 40 LQKTPLITLKGHKEAISAVQW-TAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSH 98
+Q TL+GH I A+ W T ++++S D L IWD+ ++S+
Sbjct: 54 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS---- 109
Query: 99 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPL---FDMLGHEDKVMCVNWSDYR 155
WV + ++P DN +++L++ + + ++ GH + C + D
Sbjct: 110 --WVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 166
Query: 156 YIMSGGQDNSV 166
I++ D +
Sbjct: 167 QIVTSSGDTTC 177
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 92 KSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK----VPLFDMLGHEDKVM 147
+ T H + ++ W D +L VSAS D + +WD + +PL VM
Sbjct: 59 RRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPL-----RSSWVM 112
Query: 148 -CVNWSDYRYIMSGGQDNSVRVFKTKHQPKSGQKSK 182
C Y+ GG DN ++ K + + + S+
Sbjct: 113 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 148
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 48 LKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRW 107
L GH +S ++ ++I+TSS D T +WD E +TF+ H V S+
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET------GQQTTTFTGHTGDVMSLSL 192
Query: 108 SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN-WSDYRYIMSGGQDNSV 166
+P D +LFVS + D S KLWD+R GHE + + + + +G D +
Sbjct: 193 AP-DTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 167 RVFKTK 172
R+F +
Sbjct: 251 RLFDLR 256
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 40 LQKTPLITLKGHKEAISAVQW-TAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSH 98
+Q TL+GH I A+ W T ++++S D L IWD+ ++S+
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS---- 98
Query: 99 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPL---FDMLGHEDKVMCVNWSDYR 155
WV + ++P DN +++L++ + + ++ GH + C + D
Sbjct: 99 --WVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 156 YIMSGGQDNSV 166
I++ D +
Sbjct: 156 QIVTSSGDTTC 166
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 91 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK----VPLFDMLGHEDKV 146
+ T H + ++ W D +L +SAS D + +WD + +PL V
Sbjct: 47 TRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPL-----RSSWV 100
Query: 147 M-CVNWSDYRYIMSGGQDNSVRVFKTKHQPKSGQKSK 182
M C Y+ GG DN ++ K + + + S+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 48 LKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRW 107
L GH +S ++ ++I+TSS D T +WD E +TF+ H V S+
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET------GQQTTTFTGHTGDVMSLSL 192
Query: 108 SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN-WSDYRYIMSGGQDNSV 166
+P D +LFVS + D S KLWD+R GHE + + + + +G D +
Sbjct: 193 AP-DTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 167 RVFKTK 172
R+F +
Sbjct: 251 RLFDLR 256
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 40 LQKTPLITLKGHKEAISAVQW-TAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSH 98
+Q TL+GH I A+ W T ++++S D L IWD+ ++S+
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS---- 98
Query: 99 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPL---FDMLGHEDKVMCVNWSDYR 155
WV + ++P DN +++L++ + + ++ GH + C + D
Sbjct: 99 --WVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 156 YIMSGGQDNSV 166
I++ D +
Sbjct: 156 QIVTSSGDTTC 166
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 92 KSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK----VPLFDMLGHEDKVM 147
+ T H + ++ W D +L VSAS D + +WD + +PL VM
Sbjct: 48 RRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPL-----RSSWVM 101
Query: 148 -CVNWSDYRYIMSGGQDNSVRVFKTKHQPKSGQKSK 182
C Y+ GG DN ++ K + + + S+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 48 LKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRW 107
L GH +S ++ ++I+TSS D T +WD E +TF+ H V S+
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET------GQQTTTFTGHTGDVMSLSL 192
Query: 108 SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN-WSDYRYIMSGGQDNSV 166
+P D +LFVS + D S KLWD+R GHE + + + + +G D +
Sbjct: 193 AP-DTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 167 RVFKTK 172
R+F +
Sbjct: 251 RLFDLR 256
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 40 LQKTPLITLKGHKEAISAVQW-TAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSH 98
+Q TL+GH I A+ W T ++++S D L IWD+ ++S+
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS---- 98
Query: 99 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPL---FDMLGHEDKVMCVNWSDYR 155
WV + ++P DN +++L++ + + ++ GH + C + D
Sbjct: 99 --WVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 156 YIMSGGQDNSV 166
I++ D +
Sbjct: 156 QIVTSSGDTTC 166
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 92 KSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK----VPLFDMLGHEDKVM 147
+ T H + ++ W D +L VSAS D + +WD + +PL VM
Sbjct: 48 RRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPL-----RSSWVM 101
Query: 148 -CVNWSDYRYIMSGGQDNSVRVFKTKHQPKSGQKSK 182
C Y+ GG DN ++ K + + + S+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 48 LKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRW 107
L GH +S ++ ++I+TSS D T +WD E +TF+ H V S+
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET------GQQTTTFTGHTGDVMSLSL 192
Query: 108 SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN-WSDYRYIMSGGQDNSV 166
+P D +LFVS + D S KLWD+R GHE + + + + +G D +
Sbjct: 193 AP-DTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 167 RVFKTK 172
R+F +
Sbjct: 251 RLFDLR 256
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 40 LQKTPLITLKGHKEAISAVQW-TAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSH 98
+Q TL+GH I A+ W T ++++S D L IWD+ ++S+
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS---- 98
Query: 99 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPL---FDMLGHEDKVMCVNWSDYR 155
WV + ++P DN +++L++ + + ++ GH + C + D
Sbjct: 99 --WVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 156 YIMSGGQDNSV 166
I++ D +
Sbjct: 156 QIVTSSGDTTC 166
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 91 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK----VPLFDMLGHEDKV 146
+ T H + ++ W D +L +SAS D + +WD + +PL V
Sbjct: 47 TRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPL-----RSSWV 100
Query: 147 M-CVNWSDYRYIMSGGQDNSVRVFKTKHQPKSGQKSK 182
M C Y+ GG DN ++ K + + + S+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 42 KTPLITL-KGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSH 98
TPL TL +GH++ I ++ W DE +++S D+T+ +W+ E A S F +
Sbjct: 251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE------SAEQLSQFPAR 304
Query: 99 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS 131
W +++P P LF ASFDN +++ L++
Sbjct: 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 29/142 (20%)
Query: 61 TAVDEIITSSWDHTL-------------KIWDAELGGMKKGAI---VKSTFSSHKEWVQS 104
++VDE+I+ +W+ +L IWD + KK I S S K+ +
Sbjct: 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK---AKKEVIHLSYTSPNSGIKQQLSV 219
Query: 105 VRWSPIDPQLFVSAS---FDNSVKLWDLRSPKVPLFDM-LGHEDKVMCVNWS--DYRYIM 158
V W P + +A+ D S+ +WDLR+ PL + GH+ ++ ++W D ++
Sbjct: 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL 279
Query: 159 SGGQDNSVRVFKTKHQPKSGQK 180
S G+DN+V ++ P+S ++
Sbjct: 280 SSGRDNTVLLWN----PESAEQ 297
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 15 FMTVGALLTLTNIEVTSLPSFFQLILQKT-------PLITLKGHKEAISAVQWTAVDE-- 65
F V E + +F L L KT PL+ GH + + W ++
Sbjct: 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC--GHTAPVLDIAWCPHNDNV 96
Query: 66 IITSSWDHTLKIWDAELGGM----KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD 121
I + S D T+ +W+ GG+ ++ I T H + V V W P + +SA D
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVI---TLEGHTKRVGIVAWHPTAQNVLLSAGCD 153
Query: 122 NSVKLWDLRSPKVPLFDMLG---HEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172
N + +WD+ + L LG H D + V+WS D I + +D VRV + +
Sbjct: 154 NVILVWDVGTGAAVL--TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TL GH ++ V ++ + I S S D T+K+W+ + G +++ T + H V
Sbjct: 378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN------RNGQLLQ-TLTGHSSSVW 430
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
V +SP D Q SAS D +VKLW+ R+ ++ L + GH V V +S D + I S
Sbjct: 431 GVAFSP-DDQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASD 487
Query: 163 DNSVRVFKTKHQ 174
D +V+++ Q
Sbjct: 488 DKTVKLWNRNGQ 499
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 12/132 (9%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TL GH ++ V ++ + I S S D T+K+W+ + G +++ T + H V+
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN------RNGQLLQ-TLTGHSSSVR 102
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
V +SP D Q SAS D +VKLW+ R+ ++ L + GH V V +S D + I S
Sbjct: 103 GVAFSP-DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASD 159
Query: 163 DNSVRVFKTKHQ 174
D +V+++ Q
Sbjct: 160 DKTVKLWNRNGQ 171
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TL GH ++ V ++ + I S S D T+K+W+ + G +++ T + H V
Sbjct: 214 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN------RNGQLLQ-TLTGHSSSVN 266
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
V + P D Q SAS D +VKLW+ R+ ++ L + GH V V +S D + I S
Sbjct: 267 GVAFRP-DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASD 323
Query: 163 DNSVRVFKTKHQ 174
D +V+++ Q
Sbjct: 324 DKTVKLWNRNGQ 335
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TL GH ++ V ++ + I S S D T+K+W+ + G +++ T + H V
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN------RNGQLLQ-TLTGHSSSVW 184
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
V +SP D Q SAS D +VKLW+ R+ ++ L + GH V V +S D + I S
Sbjct: 185 GVAFSP-DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASD 241
Query: 163 DNSVRVFKTKHQ 174
D +V+++ Q
Sbjct: 242 DKTVKLWNRNGQ 253
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TL GH ++ V ++ + I S S D T+K+W+ + G ++ T + H V
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN------RNGQHLQ-TLTGHSSSVW 348
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
V +SP D Q SAS D +VKLW+ R+ ++ L + GH V V +S D + I S
Sbjct: 349 GVAFSP-DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASD 405
Query: 163 DNSVRVFKTKHQ 174
D +V+++ Q
Sbjct: 406 DKTVKLWNRNGQ 417
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L TL GH ++ V ++ + I S S D T+K+W+ + G +++ T + H V
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN------RNGQLLQ-TLTGHSSSVW 553
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWD 128
V +SP D Q SAS D +VKLW+
Sbjct: 554 GVAFSP-DGQTIASASSDKTVKLWN 577
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHE 143
G G ++ +H V+ V +SP D Q SAS D +VKLW+ R+ ++ L + GH
Sbjct: 1 GSHMGVKERNRLEAHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHS 57
Query: 144 DKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQ 174
V V +S D + I S D +V+++ Q
Sbjct: 58 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 89
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 14/129 (10%)
Query: 42 KTPLITLKGHKE-AISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE 100
K+P + LKGH + I+ +Q+ + I++ S D+TLK+W A G + T H
Sbjct: 109 KSPKV-LKGHDDHVITCLQFCG-NRIVSGSDDNTLKVWSAVTGKCLR------TLVGHTG 160
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSG 160
V S S + + +S S D ++K+W+ + + + + GH V C++ + R ++SG
Sbjct: 161 GVWS---SQMRDNIIISGSTDRTLKVWNAETGEC-IHTLYGHTSTVRCMHLHEKR-VVSG 215
Query: 161 GQDNSVRVF 169
+D ++RV+
Sbjct: 216 SRDATLRVW 224
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 70/134 (52%), Gaps = 15/134 (11%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
+T L TL+GH + ++Q+ + +++ S D ++++WD E G T + H+
Sbjct: 269 ETCLHTLQGHTNRVYSLQFDGI-HVVSGSLDTSIRVWDVETGN------CIHTLTGHQSL 321
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG---HEDKVMCVNWSDYRYIM 158
+ + + VS + D++VK+WD+++ + L + G H+ V C+ + + +++
Sbjct: 322 TSGM---ELKDNILVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQF-NKNFVI 376
Query: 159 SGGQDNSVRVFKTK 172
+ D +V+++ K
Sbjct: 377 TSSDDGTVKLWDLK 390
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 47 TLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVR 106
TL GH + + +++ S D TL++WD E G H V +VR
Sbjct: 194 TLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQ------CLHVLMGH---VAAVR 243
Query: 107 WSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSV 166
D + VS ++D VK+WD + + L + GH ++V + + D +++SG D S+
Sbjct: 244 CVQYDGRRVVSGAYDFMVKVWDPET-ETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSI 301
Query: 167 RVF 169
RV+
Sbjct: 302 RVW 304
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 47 TLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TL GH+ S ++ D I+ S + D T+KIWD +K G +++ +K +V
Sbjct: 314 TLTGHQSLTSGMELK--DNILVSGNADSTVKIWD-----IKTGQCLQTLQGPNKHQ-SAV 365
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRS 131
+ +++S D +VKLWDL++
Sbjct: 366 TCLQFNKNFVITSSDDGTVKLWDLKT 391
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 45 LITLKG---HKEAISAVQWTAVDEIITSSWDHTLKIWDAELG 83
L TL+G H+ A++ +Q+ + +ITSS D T+K+WD + G
Sbjct: 352 LQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTG 392
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 24/162 (14%)
Query: 28 EVTSLPSFFQLILQKT-------PLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIW 78
E + +F L L KT PL+ GH + + W ++ I + S D T+ +W
Sbjct: 52 EASGGGAFLVLPLGKTGRVDKNVPLVX--GHTAPVLDIAWXPHNDNVIASGSEDCTVMVW 109
Query: 79 DAELGGM----KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV 134
+ GG+ ++ I T H + V V W P + +SA DN + +WD+ +
Sbjct: 110 EIPDGGLVLPLREPVI---TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAA 166
Query: 135 PLFDMLG---HEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172
L LG H D + V+WS D I + +D VRV + +
Sbjct: 167 VL--TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 47 TLKGHKEAISAVQWTAVDE---IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
T++ H + ++A+ T +D I+++S D ++ +W G + + + H +V+
Sbjct: 377 TMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYG-VAQRRLTGHSHFVE 434
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
V S D Q +S S+D ++LWDL + V +GH V+ V +S D R I+S +
Sbjct: 435 DVVLSS-DGQFALSGSWDGELRLWDL-AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 163 DNSVRVFKTKHQPK 176
D +++++ T + K
Sbjct: 493 DRTIKLWNTLGECK 506
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Query: 49 KGHKEAISAVQW---TAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
+GH++ +S V++ T I+++SWD T+K+W+ L K ++ST + H +V +V
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN--LSNCK----LRSTLAGHTGYVSTV 567
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNS 165
SP D L S D V LWDL K L+ + + + + +S RY + ++
Sbjct: 568 AVSP-DGSLCASGGKDGVVLLWDLAEGK-KLYSLEANS-VIHALCFSPNRYWLCAATEHG 624
Query: 166 VRV 168
+++
Sbjct: 625 IKI 627
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 88 GAIVKSTFSSHKEWVQSVRWSPID-PQLFVSASFDNSVKLWDL----RSPKVPLFDMLGH 142
G ++K T +H + V ++ +PID + VSAS D S+ LW L ++ V + GH
Sbjct: 371 GLVLKGTMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH 429
Query: 143 ----EDKVMCVNWSDYRYIMSGGQDNSVRV 168
ED V+ SD ++ +SG D +R+
Sbjct: 430 SHFVEDVVLS---SDGQFALSGSWDGELRL 456
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+++ S D T+K+W+ E ++ TF H+ +V V ++P DP F S D +VK
Sbjct: 112 VLSGSDDLTVKLWNWE-----NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYR------YIMSGGQDNSVRVFKTKHQPKS 177
+W L P F + +++ VN+ DY Y+++ D +++++ +Q KS
Sbjct: 167 VWSL-GQSTPNFTLTTGQER--GVNYVDYYPLPDKPYMITASDDLTIKIW--DYQTKS 219
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 42 KTPLITLKGHKEAIS-AVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE 100
K+ + TL+GH +S AV + II+ S D TLKIW++ ++K T + E
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK------TLNVGLE 271
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDL 129
+ P + ++++ FDN + L
Sbjct: 272 RSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 15/138 (10%)
Query: 39 ILQKTPLITLKGHKEAISAVQW-TAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSS 97
I + ++ L+GH++ I ++ + + D++++ S D T++IWD G S S
Sbjct: 152 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-------SLTLS 204
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP-KVPLFDM-----LGHEDKVMCVNW 151
++ V +V SP D + + S D +V++WD + V D GH+D V V +
Sbjct: 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 264
Query: 152 S-DYRYIMSGGQDNSVRV 168
+ D + ++SG D SV++
Sbjct: 265 TRDGQSVVSGSLDRSVKL 282
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Query: 66 IITSSWDHTLKIWDAELGGM-KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSV 124
I S D +++WD+E G + ++ + + HK+ V SV ++ D Q VS S D SV
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSV 280
Query: 125 KLWDLRSP------KVP-----LFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSV 166
KLW+L++ K P +GH+D V+ V + + YI+SG +D V
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 334
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+ T + D ++IWD E +K ++ H++ + S+ + P +L VS S D +V+
Sbjct: 138 LATGAEDRLIRIWDIE---NRKIVMI---LQGHEQDIYSLDYFPSGDKL-VSGSGDRTVR 190
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWS--DYRYIMSGGQDNSVRVFKTK 172
+WDLR+ + L L ED V V S D +YI +G D +VRV+ ++
Sbjct: 191 IWDLRTGQCSL--TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 41 QKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE 100
Q I L+GH+E + + +++ S+D T+K+W+ G +K F H+
Sbjct: 1039 QLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD------FVCHQG 1092
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSG 160
V S S D F S S D + K+W +PL ++ GH V C +S +++
Sbjct: 1093 TVLSCDISH-DATKFSSTSADKTAKIWSF-DLLLPLHELRGHNGCVRCSAFSVDSTLLAT 1150
Query: 161 GQDN 164
G DN
Sbjct: 1151 GDDN 1154
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 41 QKTPLITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHK 99
QK T+ GH +++ +++ D+++ S S D TLK+WDA +K VK F + +
Sbjct: 738 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE 797
Query: 100 E-------WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152
+ V+ WS ++ V+A N + L+D+ + + GH + ++S
Sbjct: 798 DPQEDMEVIVKCCSWSADGARIMVAAK--NKIFLFDIHTSGLLGEIHTGHHSTIQYCDFS 855
Query: 153 DYRYI 157
++
Sbjct: 856 PQNHL 860
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVF 169
D Q S D +++++ + + L ++ HED+V+C +S D R+I + D V+++
Sbjct: 632 DGQRIASCGADKTLQVFKAETGE-KLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 170 KT 171
+
Sbjct: 691 NS 692
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 12/81 (14%)
Query: 51 HKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTF-SSHKEWVQSVRWS 108
HK+ + +Q+TA ++ +I+SS D +++W+ +L K F H+E V+ R
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLD--------KCIFLRGHQETVKDFRL- 1058
Query: 109 PIDPQLFVSASFDNSVKLWDL 129
+ +S SFD +VK+W++
Sbjct: 1059 -LKNSRLLSWSFDGTVKVWNI 1078
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+++ S D T+K+W+ E ++ TF H+ +V V ++P DP F S D +VK
Sbjct: 112 VLSGSDDLTVKLWNWE-----NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYR------YIMSGGQDNSVRVFKTKHQPKS 177
+W L P F + +++ VN+ DY Y+++ D +++++ +Q KS
Sbjct: 167 VWSL-GQSTPNFTLTTGQER--GVNYVDYYPLPDKPYMITASDDLTIKIW--DYQTKS 219
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 42 KTPLITLKGHKEAIS-AVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE 100
K+ + TL+GH +S AV + II+ S D TLKIW++ ++K V +
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV----GLERS 273
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDL 129
W + P + ++++ FDN + L
Sbjct: 274 WCIATH--PTGRKNYIASGFDNGFTVLSL 300
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 75/141 (53%), Gaps = 17/141 (12%)
Query: 47 TLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVR 106
TL+GH ++ + +IT + D ++++D+ + K +++ S H V +++
Sbjct: 116 TLRGHXTSVITCLQFEDNYVITGADDKXIRVYDS----INKKFLLQ--LSGHDGGVWALK 169
Query: 107 WSPIDPQLFVSASFDNSVKLWDLRSPKVP-LFDMLGHEDKVMCVNWSDYR---YIMSGGQ 162
++ + VS S D +V++WD++ +F+ GH V C++ +Y+ YI++G +
Sbjct: 170 YAH--GGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 163 DNSVRVFKTKHQ---PKSGQK 180
DN++ V+K + P G++
Sbjct: 226 DNTLHVWKLPKESSVPDHGEE 246
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 14/122 (11%)
Query: 48 LKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTF--SSHKEWVQSV 105
L+GH ++ V + +++ S+D+TL +WD A K + S H + + S
Sbjct: 266 LRGHXASVRTVSGHG-NIVVSGSYDNTLIVWDV--------AQXKCLYILSGHTDRIYST 316
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNS 165
+ + + +SAS D ++++WDL + ++ + + GH V + SD ++++S D S
Sbjct: 317 IYDH-ERKRCISASXDTTIRIWDLENGELX-YTLQGHTALVGLLRLSD-KFLVSAAADGS 373
Query: 166 VR 167
+R
Sbjct: 374 IR 375
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 48 LKGHKEAISA---VQWTAVDEIITSSWDHTLKIWD-------AELGGMKKGAIVKSTFSS 97
+GH + V++ + I+T S D+TL +W + G +V T
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 258
Query: 98 HKEWV-------QSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN 150
+ +V SVR + VS S+DN++ +WD+ K L+ + GH D++
Sbjct: 259 NPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKC-LYILSGHTDRIYSTI 317
Query: 151 WSDYR-YIMSGGQDNSVRV 168
+ R +S D ++R+
Sbjct: 318 YDHERKRCISASXDTTIRI 336
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 40 LQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK 99
+ K L+ L GH + A+++ +++ S D T+++WD +KKG F H
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD-----IKKGCCTH-VFEGHN 203
Query: 100 EWVQS---VRWSPIDPQLFVSASFDNSVKLWDL-RSPKVP 135
V+ V + I + V+ S DN++ +W L + VP
Sbjct: 204 STVRCLDIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVP 241
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 47 TLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVR 106
TL+GH + ++ + +++++ D +++ WDA K FS H + ++
Sbjct: 347 TLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRK--------FSYHHTNLSAIT 397
Query: 107 WSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW 151
+ + VS S +N +++LRS K+ ++L D++ VN+
Sbjct: 398 TFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNF 441
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+++ S D T+K+W+ E ++ TF H+ +V V ++P DP F S D +VK
Sbjct: 112 VLSGSDDLTVKLWNWE-----NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYR------YIMSGGQDNSVRVFKTKHQPKS 177
+W L P F + +++ VN+ DY Y+++ D +++++ +Q KS
Sbjct: 167 VWSL-GQSTPNFTLTTGQER--GVNYVDYYPLPDKPYMITASDDLTIKIW--DYQTKS 219
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 42 KTPLITLKGHKEAIS-AVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE 100
K+ + TL+GH +S AV + II+ S D TLKIW++ ++K V +
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV----GLERS 273
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDL 129
W + P + ++++ FDN + L
Sbjct: 274 WCIATH--PTGRKNYIASGFDNGFTVLSL 300
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+++ S D T+K+W+ E ++ TF H+ +V V ++P DP F S D +VK
Sbjct: 112 VLSGSDDLTVKLWNWE-----NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYR------YIMSGGQDNSVRVFKTKHQPKS 177
+W L P F + +++ VN+ DY Y+++ D +++++ +Q KS
Sbjct: 167 VWSL-GQSTPNFTLTTGQER--GVNYVDYYPLPDKPYMITASDDLTIKIW--DYQTKS 219
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 42 KTPLITLKGHKEAIS-AVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE 100
K+ + TL+GH +S AV + II+ S D TLKIW++ ++K V +
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV----GLERS 273
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDL 129
W + P + ++++ FDN + L
Sbjct: 274 WCIATH--PTGRKNYIASGFDNGFTVLSL 300
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 10/120 (8%)
Query: 48 LKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRW 107
L+GH ++ V + +++ S+D+TL +WD + MK I+ S H + + S +
Sbjct: 266 LRGHMASVRTVSGHG-NIVVSGSYDNTLIVWD--VAQMKCLYIL----SGHTDRIYSTIY 318
Query: 108 SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVR 167
+ + +SAS D ++++WDL + ++ ++ + GH V + SD ++++S D S+R
Sbjct: 319 DH-ERKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLSD-KFLVSAAADGSIR 375
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 75/141 (53%), Gaps = 17/141 (12%)
Query: 47 TLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVR 106
TL+GH ++ + +IT + D ++++D+ + K +++ S H V +++
Sbjct: 116 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDS----INKKFLLQ--LSGHDGGVWALK 169
Query: 107 WSPIDPQLFVSASFDNSVKLWDLRSPKVP-LFDMLGHEDKVMCVNWSDYR---YIMSGGQ 162
++ + VS S D +V++WD++ +F+ GH V C++ +Y+ YI++G +
Sbjct: 170 YAH--GGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 163 DNSVRVFKTKHQ---PKSGQK 180
DN++ V+K + P G++
Sbjct: 226 DNTLHVWKLPKESSVPDHGEE 246
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 40 LQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK 99
+ K L+ L GH + A+++ +++ S D T+++WD +KKG F H
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD-----IKKGCCTH-VFEGHN 203
Query: 100 EWVQS---VRWSPIDPQLFVSASFDNSVKLWDL-RSPKVP 135
V+ V + I + V+ S DN++ +W L + VP
Sbjct: 204 STVRCLDIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVP 241
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
+ TL+GH + ++ + +++++ D +++ WDA K FS H + +
Sbjct: 345 MYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRK--------FSYHHTNLSA 395
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW 151
+ + + VS S +N +++LRS K+ ++L D++ VN+
Sbjct: 396 ITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNF 441
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 35 FFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKS 93
F I +KTP L GH IS +++ ++ ++++S D TL+IW G ++
Sbjct: 230 FVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS------QN 283
Query: 94 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130
F H + + S W D +S S D SV+LW L+
Sbjct: 284 CFYGHSQSIVSASWVGDDK--VISCSMDGSVRLWSLK 318
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 50 GHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP 109
GH ++I + W D++I+ S D ++++W + + +IV + + R S
Sbjct: 287 GHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVP------IFAGRISQ 340
Query: 110 IDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVM 147
D Q + A D V ++DL+ + G+ D ++
Sbjct: 341 -DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGIL 377
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 8/141 (5%)
Query: 45 LITLKGHKEAISAVQWTAVDEII-TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
L ++GH+ + V W+ + T S D ++ IW+ + G + I S H + V+
Sbjct: 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI--SVLQEHSQDVK 157
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML-GHEDKVMCVNWSDYR---YIMS 159
V W P + L S+S+D++V++W +L GHE V ++ + S
Sbjct: 158 HVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS 216
Query: 160 GGQDNSVRVFKTKHQPKSGQK 180
G D++VRV+K + Q+
Sbjct: 217 GSDDSTVRVWKYMGDDEDDQQ 237
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 11/95 (11%)
Query: 96 SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM------LGHEDKVMCV 149
++HK+ ++SV W P L + SFD++V +W F+M GHE++V V
Sbjct: 55 TAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 150 NWS-DYRYIMSGGQDNSVRVFKTKHQPKSGQKSKA 183
WS D Y+ + +D SV +++T +SG++ +
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWET---DESGEEYEC 145
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 41 QKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE 100
Q + L+ H+E + + +++ S+D T+K+W+ G +++ F+ H+
Sbjct: 1040 QTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIER------DFTCHQG 1093
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLW--DLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
V S S D F S S D + K+W DL S PL ++ GH V C +S ++
Sbjct: 1094 TVLSCAISS-DATKFSSTSADKTAKIWSFDLLS---PLHELKGHNGCVRCSAFSLDGILL 1149
Query: 159 SGGQDN 164
+ G DN
Sbjct: 1150 ATGDDN 1155
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 41 QKTPLITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHK 99
QK T+ GH +++ +++ DE++ S S D TL++WD +K VK F S +
Sbjct: 739 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 798
Query: 100 E-------WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152
+ V+ WS ++ V+A N V L+D+ + + GH + ++S
Sbjct: 799 DPPEDVEVIVKCCSWSADGDKIIVAAK--NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 856
Query: 153 DYRYI 157
Y ++
Sbjct: 857 PYDHL 861
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 47 TLKGHKEAISAVQWTAVDE---IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
T H E ++ +T + T S D LK+WD ++T H V
Sbjct: 701 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL------NQKECRNTMFGHTNSVN 754
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRS 131
R+SP D +L S S D +++LWD+RS
Sbjct: 755 HCRFSP-DDELLASCSADGTLRLWDVRS 781
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 50 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWS 108
GHK+A+ +Q+TA + +I+SS D +++W+ + G +H+E V+ R
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-------VFLQAHQETVKDFRL- 1059
Query: 109 PIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVM-CVNWSDYRYIMSGGQDNSVR 167
+ +S SFD +VK+W++ + ++ D H+ V+ C SD S D + +
Sbjct: 1060 -LQDSRLLSWSFDGTVKVWNVITGRIER-DFTCHQGTVLSCAISSDATKFSSTSADKTAK 1117
Query: 168 V 168
+
Sbjct: 1118 I 1118
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW-SDYRYIMSGGQDNSVRV 168
D Q S D +++++ + + L D+ HED+V+C + SD YI + D V++
Sbjct: 633 DGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 690
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 46 ITLKGHKEAISAVQWTAVDEIITSSW-DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
+ ++ H +A+ ++ + I S D TL+++ AE G +K +K+ H++ V
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKA----HEDEVLC 669
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDMLGHEDKVMCV---NWSDYRYIMSG 160
+S D + S D VK+WD + K V +D H ++V C N S++ + +G
Sbjct: 670 CAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDE--HSEQVNCCHFTNKSNHLLLATG 726
Query: 161 GQD 163
D
Sbjct: 727 SND 729
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 41 QKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE 100
Q + L+ H+E + + +++ S+D T+K+W+ G +++ F+ H+
Sbjct: 1033 QTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIER------DFTCHQG 1086
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLW--DLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
V S S D F S S D + K+W DL S PL ++ GH V C +S ++
Sbjct: 1087 TVLSCAISS-DATKFSSTSADKTAKIWSFDLLS---PLHELKGHNGCVRCSAFSLDGILL 1142
Query: 159 SGGQDN 164
+ G DN
Sbjct: 1143 ATGDDN 1148
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 41 QKTPLITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHK 99
QK T+ GH +++ +++ DE++ S S D TL++WD +K VK F S +
Sbjct: 732 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 791
Query: 100 E-------WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152
+ V+ WS ++ V+A N V L+D+ + + GH + ++S
Sbjct: 792 DPPEDVEVIVKCCSWSADGDKIIVAAK--NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849
Query: 153 DYRYI 157
Y ++
Sbjct: 850 PYDHL 854
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 47 TLKGHKEAISAVQWTAVDE---IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
T H E ++ +T + T S D LK+WD ++T H V
Sbjct: 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL------NQKECRNTMFGHTNSVN 747
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRS 131
R+SP D +L S S D +++LWD+RS
Sbjct: 748 HCRFSP-DDELLASCSADGTLRLWDVRS 774
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 50 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWS 108
GHK+A+ +Q+TA + +I+SS D +++W+ + G +H+E V+ R
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-------VFLQAHQETVKDFRL- 1052
Query: 109 PIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVM-CVNWSDYRYIMSGGQDNSVR 167
+ +S SFD +VK+W++ + ++ D H+ V+ C SD S D + +
Sbjct: 1053 -LQDSRLLSWSFDGTVKVWNVITGRIER-DFTCHQGTVLSCAISSDATKFSSTSADKTAK 1110
Query: 168 V 168
+
Sbjct: 1111 I 1111
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW-SDYRYIMSGGQDNSVRV 168
D Q S D +++++ + + L D+ HED+V+C + SD YI + D V++
Sbjct: 626 DGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 46 ITLKGHKEAISAVQWTAVDEIITSSW-DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
+ ++ H +A+ ++ + I S D TL+++ AE G +K +K+ H++ V
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKA----HEDEVLC 662
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDMLGHEDKVMCV---NWSDYRYIMSG 160
+S D + S D VK+WD + K V +D H ++V C N S++ + +G
Sbjct: 663 CAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDE--HSEQVNCCHFTNKSNHLLLATG 719
Query: 161 GQD 163
D
Sbjct: 720 SND 722
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 44 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
P+ + KGH + TA +++SWD TL++WD G + F HK V
Sbjct: 51 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ------RFVGHKSDV 104
Query: 103 QSVRWSPIDPQ--LFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW-------SD 153
SV ID + + +S S D ++K+W ++ L +LGH D V V D
Sbjct: 105 MSV---DIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDD 159
Query: 154 YRYIMSGGQDNSVRVFK 170
I+S G D V+ +
Sbjct: 160 SVTIISAGNDKMVKAWN 176
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 90 IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK----VPLFDMLGHEDK 145
+++ T H WV S+ S P L +SAS D ++ W L VP+ GH
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 146 VM-CVNWSDYRYIMSGGQDNSVRVF 169
V C +D Y +S D ++R++
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLW 86
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 44 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
P+ + KGH + TA +++SWD TL++WD G + F HK V
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ------RFVGHKSDV 110
Query: 103 QSVRWSPIDPQ--LFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW-------SD 153
SV ID + + +S S D ++K+W ++ L +LGH D V V D
Sbjct: 111 MSV---DIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 154 YRYIMSGGQDNSVRVFK 170
I+S G D V+ +
Sbjct: 166 SVTIISAGNDKMVKAWN 182
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK----VPLFD 138
G + +++ T H WV S+ S P L +SAS D ++ W L VP+
Sbjct: 1 GASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS 60
Query: 139 MLGHEDKVM-CVNWSDYRYIMSGGQDNSVRVF 169
GH V C +D Y +S D ++R++
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 44 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
P+ + KGH + TA +++SWD TL++WD G + F HK V
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ------RFVGHKSDV 110
Query: 103 QSVRWSPIDPQ--LFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW-------SD 153
SV ID + + +S S D ++K+W ++ L +LGH D V V D
Sbjct: 111 MSV---DIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 154 YRYIMSGGQDNSVRVFK 170
I+S G D V+ +
Sbjct: 166 SVTIISAGNDKMVKAWN 182
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK----VPLFD 138
G + +++ T H WV S+ S P L +SAS D ++ W L VP+
Sbjct: 1 GASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS 60
Query: 139 MLGHEDKVM-CVNWSDYRYIMSGGQDNSVRVF 169
GH V C +D Y +S D ++R++
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 44 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
P+ + KGH + TA +++SWD TL++WD G + F HK V
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ------RFVGHKSDV 110
Query: 103 QSVRWSPIDPQ--LFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW-------SD 153
SV ID + + +S S D ++K+W ++ L +LGH D V V D
Sbjct: 111 MSV---DIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 154 YRYIMSGGQDNSVRVFK 170
I+S G D V+ +
Sbjct: 166 SVTIISAGNDKMVKAWN 182
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 90 IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK----VPLFDMLGHEDK 145
+++ T H WV S+ S P L +SAS D ++ W L VP+ GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 146 VM-CVNWSDYRYIMSGGQDNSVRVF 169
V C +D Y +S D ++R++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLW 92
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 44 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
P+ + KGH + TA +++SWD TL++WD G + F HK V
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ------RFVGHKSDV 110
Query: 103 QSVRWSPIDPQ--LFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW-------SD 153
SV ID + + +S S D ++K+W ++ L +LGH D V V D
Sbjct: 111 MSV---DIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 154 YRYIMSGGQDNSVRVFK 170
I+S G D V+ +
Sbjct: 166 SVTIISAGNDKMVKAWN 182
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 90 IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK----VPLFDMLGHEDK 145
+++ T H WV S+ S P L +SAS D ++ W L VP+ GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 146 VM-CVNWSDYRYIMSGGQDNSVRVF 169
V C +D Y +S D ++R++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLW 92
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 51/172 (29%)
Query: 20 ALLTLTNIEVTSLPSFFQL-----ILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWD 72
++ L ++E +S S++ I + P + H+ ++ VQW D +SS+D
Sbjct: 66 GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV----HRYSVETVQWYPHDTGMFTSSSFD 121
Query: 73 HTLKIWDA---------------------------------------ELGGMKKGAIVKS 93
TLK+WD +L +K G+
Sbjct: 122 KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-CSH 180
Query: 94 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDK 145
H++ + +V WSP + +AS D+ VKLWD+R L + H K
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK 232
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 48 LKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDAELG----------GMKKGAIVKSTF 95
L+GH++ I AV W+ + I T+S D +K+WD KK V+S
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 96 SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128
++H V + ++ D ++ DN ++LW+
Sbjct: 242 TAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWN 273
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 21/137 (15%)
Query: 44 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
P+ + KGH + TA +++SWD TL++WD G + F HK V
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ------RFVGHKSDV 110
Query: 103 QSVRWSPIDPQL--FVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW-------SD 153
SV ID + +S S D ++K+W ++ L +LGH D V V D
Sbjct: 111 XSV---DIDKKASXIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 154 YRYIMSGGQDNSVRVFK 170
I+S G D V+ +
Sbjct: 166 SVTIISAGNDKXVKAWN 182
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 90 IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK----VPLFDMLGHEDK 145
+++ T H WV S+ S P L +SAS D ++ W L VP+ GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 146 VM-CVNWSDYRYIMSGGQDNSVRVF 169
V C +D Y +S D ++R++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLW 92
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 44 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
P L+GH +S V ++ + ++ SWD TL++WD G + F H + V
Sbjct: 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR------RFVGHTKDV 131
Query: 103 QSVRWSPIDPQLFVSASFDNSVKLWD-LRSPKVPLFDMLGHEDKVMCVNWSDYR---YIM 158
SV +S + Q+ VS S D ++KLW+ L K + D H + V CV +S I+
Sbjct: 132 LSVAFSSDNRQI-VSGSRDKTIKLWNTLGVCKYTVQDE-SHSEWVSCVRFSPNSSNPIIV 189
Query: 159 SGGQDNSVRV-------FKTKHQPKSG 178
S G D V+V KT H +G
Sbjct: 190 SCGWDKLVKVWNLANCKLKTNHIGHTG 216
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK----VPLFDML 140
M + ++ T H WV + +P P + +SAS D ++ +W L + +P +
Sbjct: 24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 83
Query: 141 GHEDKVM-CVNWSDYRYIMSGGQDNSVRVF 169
GH V V SD ++ +SG D ++R++
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 51 HKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP 109
H +SA +T D +I+T+S D T +WD E G + + +F H V + +P
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ------SFHGHGADVLCLDLAP 206
Query: 110 IDP-QLFVSASFDNSVKLWDLRSPK-VPLFDMLGHEDKVMCVN-WSDYRYIMSGGQDNSV 166
+ FVS D +WD+RS + V F+ HE V V + SG D +
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFET--HESDVNSVRYYPSGDAFASGSDDATC 264
Query: 167 RVFKTK 172
R++ +
Sbjct: 265 RLYDLR 270
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 52/183 (28%)
Query: 47 TLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDA------------------------- 80
TLKGH + + W I++SS D + +WD+
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 81 ---ELGGMKKGAIV--------------KSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
GG+ V K + + H ++ + ++ D Q+ ++AS D +
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQI-LTASGDGT 177
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYR---YIMSGGQDNSVRVFKTKHQPKSGQK 180
LWD+ S ++ L GH V+C++ + +SGG D V+ +SGQ
Sbjct: 178 CALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM----RSGQC 232
Query: 181 SKA 183
+A
Sbjct: 233 VQA 235
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 39 ILQKTPLITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIW 78
+L+ + + L GH+ +S ++ + S SWDHTL++W
Sbjct: 313 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 20/147 (13%)
Query: 44 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
P L+GH +S V ++ + ++ SWD TL++WD G + F H + V
Sbjct: 55 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR------RFVGHTKDV 108
Query: 103 QSVRWSPIDPQLFVSASFDNSVKLWD-LRSPKVPLFDMLGHEDKVMCVNWSDYR---YIM 158
SV +S D + VS S D ++KLW+ L K + D H + V CV +S I+
Sbjct: 109 LSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDE-SHSEWVSCVRFSPNSSNPIIV 166
Query: 159 SGGQDNSVRV-------FKTKHQPKSG 178
S G D V+V KT H +G
Sbjct: 167 SCGWDKLVKVWNLANCKLKTNHIGHTG 193
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK----VPLFDML 140
M + ++ T H WV + +P P + +SAS D ++ +W L + +P +
Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60
Query: 141 GHEDKVM-CVNWSDYRYIMSGGQDNSVRVF 169
GH V V SD ++ +SG D ++R++
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 16/130 (12%)
Query: 48 LKGHKEAISAVQWTAVD--EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
L G A+++V + II+ S D+T+ I++ K STF H ++V SV
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK------STFGEHTKFVHSV 196
Query: 106 RWSPIDPQLFVSASFDNSVKLWD-LRSPKVPLFD-----MLGHEDKVMCVNWS-DYRYIM 158
R++P D LF S D ++ L++ + K +F+ + H V + WS D I
Sbjct: 197 RYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255
Query: 159 SGGQDNSVRV 168
S D ++++
Sbjct: 256 SASADKTIKI 265
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDMLGHE-DKVMCVNWSDYR 155
H V V WSP + +L + S DNSV +W++ P P+ H V V W +
Sbjct: 535 HTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 593
Query: 156 YIMSGGQDNSVR 167
I+S GQD++++
Sbjct: 594 TIVSAGQDSNIK 605
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 51 HKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPI 110
H I+ ++ T+ ++ T SWD LK+ A G+ V + SS +
Sbjct: 366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA----VSA 421
Query: 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVF 169
D + V+A + + + +VP+ CV S D +++ GGQD+ V V+
Sbjct: 422 DGDIAVAACYKHIAIYSHGKLTEVPI------SYNSSCVALSNDKQFVAVGGQDSKVHVY 475
Query: 170 K 170
K
Sbjct: 476 K 476
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 47 TLKGHKEAISAVQWTAVDEIITSSW-DHTLKIWDAELGGMKKGAIVKSTFS--SHKEWVQ 103
T H + + +V++ + S+ D T+ +++ + G K G + +H V
Sbjct: 185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG-VDGTKTGVFEDDSLKNVAHSGSVF 243
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGH--EDKVMCVNWS 152
+ WSP D SAS D ++K+W++ + KV +G ED+ + + W+
Sbjct: 244 GLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 293
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 65 EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSV 124
+ ++ S D +K+WD +V S++ +H V V SP +F+S S DN +
Sbjct: 141 QAVSGSKDICIKVWDL------AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRI 194
Query: 125 KLWDLRSPK 133
LWD R PK
Sbjct: 195 LLWDTRCPK 203
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 45 LITLKGHKEAISAVQWTAVDEII-TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
+ TL+GH+ + +V W ++ T S D ++ +W+ + + S +SH + V+
Sbjct: 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD---EEDEYECVSVLNSHTQDVK 154
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDMLGHEDKVMCVNWS-----DYRYI 157
V W P +L SAS+D++VKL+ V + GHE V WS + +
Sbjct: 155 HVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTV----WSLAFDPSGQRL 209
Query: 158 MSGGQDNSVRVFK 170
S D +VR+++
Sbjct: 210 ASCSDDRTVRIWR 222
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSS------ 97
TL+GH+ + ++ + + + S S D T++IW L G ++G + S
Sbjct: 187 CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT 246
Query: 98 ----HKEWVQSVRWSPIDPQLFVSASFDNSVKLW--DLRS-PKVPLFDML-----GHEDK 145
H + + W + L +A D++++++ D S P+ P F + H
Sbjct: 247 LSGFHSRTIYDIAWCQLTGAL-ATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD 305
Query: 146 VMCVNWS 152
V CV W+
Sbjct: 306 VNCVAWN 312
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 95 FSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDML-GHEDKVMCVNWS 152
+ H + +++ P DP L +S S D++++LW++++ V +F + GH D+V+ ++
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 153 DY-RYIMSGGQDNSVRVFK 170
IMS G D+S+++++
Sbjct: 207 LLGEKIMSCGMDHSLKLWR 225
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 35/129 (27%)
Query: 22 LTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIW-- 78
L L NI+ +L + F + +GH++ + + + + E I++ DH+LK+W
Sbjct: 176 LRLWNIQTDTLVAIFGGV---------EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
Query: 79 -------------DAELGGMKKGAIVK-------STFSSHKEWVQSVRWSPIDPQLFVSA 118
D + I + ST H+ +V VRW L +S
Sbjct: 227 NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSK 283
Query: 119 SFDNSVKLW 127
S +N++ W
Sbjct: 284 SCENAIVCW 292
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 95 FSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDML-GHEDKVMCVNWS 152
+ H + +++ P DP L +S S D++++LW++++ V +F + GH D+V+ ++
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 153 DY-RYIMSGGQDNSVRVFK 170
IMS G D+S+++++
Sbjct: 171 LLGEKIMSCGMDHSLKLWR 189
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 35/129 (27%)
Query: 22 LTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIW-- 78
L L NI+ +L + F ++GH++ + + + + E I++ DH+LK+W
Sbjct: 140 LRLWNIQTDTLVAIFG---------GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
Query: 79 -------------DAELGGMKKGAIVK-------STFSSHKEWVQSVRWSPIDPQLFVSA 118
D + I + ST H+ +V VRW L +S
Sbjct: 191 NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSK 247
Query: 119 SFDNSVKLW 127
S +N++ W
Sbjct: 248 SCENAIVCW 256
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 95 FSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDML-GHEDKVMCVNWS 152
+ H + +++ P DP L +S S D++++LW++++ V +F + GH D+V+ ++
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 153 DY-RYIMSGGQDNSVRVFK 170
IMS G D+S+++++
Sbjct: 166 LLGEKIMSCGMDHSLKLWR 184
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 35/129 (27%)
Query: 22 LTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIW-- 78
L L NI+ +L + F ++GH++ + + + + E I++ DH+LK+W
Sbjct: 135 LRLWNIQTDTLVAIFG---------GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
Query: 79 -------------DAELGGMKKGAIVK-------STFSSHKEWVQSVRWSPIDPQLFVSA 118
D + I + ST H+ +V VRW L +S
Sbjct: 186 NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSK 242
Query: 119 SFDNSVKLW 127
S +N++ W
Sbjct: 243 SCENAIVCW 251
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 95 FSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDML-GHEDKVMCVNWS 152
+ H + +++ P DP L +S S D++++LW++++ V +F + GH D+V+ ++
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 153 DY-RYIMSGGQDNSVRVFK 170
IMS G D+S+++++
Sbjct: 170 LLGEKIMSCGMDHSLKLWR 188
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 35/129 (27%)
Query: 22 LTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIW-- 78
L L NI+ +L + F ++GH++ + + + + E I++ DH+LK+W
Sbjct: 139 LRLWNIQTDTLVAIFG---------GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 79 -------------DAELGGMKKGAIVK-------STFSSHKEWVQSVRWSPIDPQLFVSA 118
D + I + ST H+ +V VRW L +S
Sbjct: 190 NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSK 246
Query: 119 SFDNSVKLW 127
S +N++ W
Sbjct: 247 SCENAIVCW 255
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 95 FSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDML-GHEDKVMCVNWS 152
+ H + +++ P DP L +S S D++++LW++++ V +F + GH D+V+ ++
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 153 DY-RYIMSGGQDNSVRVFK 170
IMS G D+S+++++
Sbjct: 170 LLGEKIMSCGMDHSLKLWR 188
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 35/129 (27%)
Query: 22 LTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIW-- 78
L L NI+ +L + F ++GH++ + + + + E I++ DH+LK+W
Sbjct: 139 LRLWNIQTDTLVAIFG---------GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 79 -------------DAELGGMKKGAIVK-------STFSSHKEWVQSVRWSPIDPQLFVSA 118
D + I + ST H+ +V VRW L +S
Sbjct: 190 NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSK 246
Query: 119 SFDNSVKLW 127
S +N++ W
Sbjct: 247 SCENAIVCW 255
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 64 DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
++ +T+S D T+K+W + ++K+ H + V+ + + +D F+S S D
Sbjct: 156 NKFLTASADKTIKLW-------QNDKVIKTFSGIHNDVVRHL--AVVDDGHFISCSNDGL 206
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKH 173
+KL D + V L GHE V C+ I+S G+D +VR++ ++
Sbjct: 207 IKLVDXHTGDV-LRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN 255
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKK 87
L T +GH+ + ++ +I++ D T++IW E G +K+
Sbjct: 218 LRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQ 260
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 47 TLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVR 106
TLKGH + + V ++ + S D T+++W K + + + + ++ SV
Sbjct: 13 TLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWS------KDDQWLGTVVYTGQGFLNSVC 66
Query: 107 WSPIDPQLFVSASFD---NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQD 163
+ + +L + D N V L+ S + PL+ ++GH+ V +++ D ++SG D
Sbjct: 67 YDS-EKELLLFGGKDTXINGVPLF-ATSGEDPLYTLIGHQGNVCSLSFQD-GVVISGSWD 123
Query: 164 NSVRVFK 170
+ +V+K
Sbjct: 124 KTAKVWK 130
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 65 EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP--IDPQLFVSASFDN 122
+ +T D+ +KIW + + +++ST H +WV+ V WSP + S S D
Sbjct: 172 KFVTGGADNLVKIW--KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNW------SDYRYIMSGGQDNSVRVFKTKHQPK 176
+ +W + + P L E+K V W S +SGG DN V ++K + K
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEGK 288
Score = 33.1 bits (74), Expect = 0.084, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 33/148 (22%)
Query: 47 TLKGHKEAISAVQWT--AVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
TL GH+ + V W I+ S S+D + IW E G + A+ + H V
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV----HAVHSASVN 103
Query: 104 SVRWSPID--PQLFVSASFDNSVKLWDLR-----SPKVPLFDMLGHEDKVMCVNWS---- 152
SV+W+P + P L V++S D V + + + SP + + H V +W+
Sbjct: 104 SVQWAPHEYGPLLLVASS-DGKVSVVEFKENGTTSPII----IDAHAIGVNSASWAPATI 158
Query: 153 ----------DYRYIMSGGQDNSVRVFK 170
+ R ++GG DN V+++K
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWK 186
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 19/157 (12%)
Query: 15 FMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEI-ITSSWDH 73
++ GA+ + NI F + K L TL+GH I ++ ++ ++ +T+S D
Sbjct: 178 YLASGAIDGIINI--------FDIATGKL-LHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228
Query: 74 TLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK 133
+KI+D + A + T S H WV +V + P D FVS+S D SVK+WD+ + +
Sbjct: 229 YIKIYDVQH------ANLAGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDVGT-R 280
Query: 134 VPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVF 169
+ H+D+V V ++ + I+S G D + ++
Sbjct: 281 TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 65 EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSV 124
+ ++ D ++K+WD + + A++KS +++H V V P +F+S D +
Sbjct: 153 QAVSGGKDFSVKVWD-----LSQKAVLKS-YNAHSSEVNCVAACPGKDTIFLSCGEDGRI 206
Query: 125 KLWDLRSPK 133
LWD R PK
Sbjct: 207 LLWDTRKPK 215
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 52 KEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFS--SHKEWVQSVRWSP 109
+ ++ V W + I+ +S +++W+ ++K +++ + F+ H + V+++
Sbjct: 94 EAGVTDVAWVSEKGILVASDSGAVELWEI----LEKESLLVNKFAKYEHDDIVKTLSVFS 149
Query: 110 IDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYR--YIMSGGQDNSVR 167
D VS D SVK+WDL S K L H +V CV + +S G+D +
Sbjct: 150 -DGTQAVSGGKDFSVKVWDL-SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL 207
Query: 168 VFKTKHQPKSGQK 180
++ T+ +PK +
Sbjct: 208 LWDTR-KPKPATR 219
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 89 AIVKSTFS------SHKEWVQSVRWSPIDPQLFVSASFDNSV 124
A++ + FS SH+++V V WSP+D F + +D+ V
Sbjct: 295 AVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKV 336
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITSSW-DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
+ TL GH + + ++W + S D+ + +W + G + G + TF+ H+ V+
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG--EGGWVPLQTFTQHQGAVK 291
Query: 104 SVRWSPIDPQLFVS--ASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSG 160
+V W P + + + D +++W++ S + +V + WS Y+ ++SG
Sbjct: 292 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHSQVCSILWSPHYKELISG 349
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 18/137 (13%)
Query: 39 ILQKTPLITLKGHKEAISAVQWTAVDEII---TSSWDHTLKIWDAELGGMKKGAIVKSTF 95
ILQ L+ ++ E IS+V W + TSS + +++WD + +
Sbjct: 148 ILQ---LLQMEQPGEYISSVAWIKEGNYLAVGTSSAE--VQLWDVQQQKRLR------NM 196
Query: 96 SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DY 154
+SH V S+ W + + S S + D+R + + + GH +V + W+ D
Sbjct: 197 TSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 253
Query: 155 RYIMSGGQDNSVRVFKT 171
R++ SGG DN V V+ +
Sbjct: 254 RHLASGGNDNLVNVWPS 270
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 44 PLITLKGHKEAISAVQWTAVDEIITSSW----DHTLKIWDAELGGMKKGAIVKSTFSSHK 99
PL T H+ A+ AV W + ++ D ++IW+ + GA + S +H
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN-----VCSGACL-SAVDAHS 332
Query: 100 EWVQSVRWSPIDPQLFVSASF-DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYI 157
+ V S+ WSP +L F N + +W + + ++ GH +V+ + S D +
Sbjct: 333 Q-VCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATV 390
Query: 158 MSGGQDNSVRVFKT 171
S D ++R+++
Sbjct: 391 ASAAADETLRLWRC 404
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 65 EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP--IDPQLFVSASFDN 122
+ +T D+ +KIW + + +++ST H +WV+ V WSP + S S D
Sbjct: 174 KFVTGGADNLVKIW--KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231
Query: 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNW------SDYRYIMSGGQDNSVRVFKTKHQPK 176
+ +W + + P L E+K V W S +SGG DN V ++K + K
Sbjct: 232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEGK 290
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 28/158 (17%)
Query: 35 FFQLILQKTPLI-TLKGHKEAISAVQWT--AVDEIITS-SWDHTLKIWDAELGGMKKGAI 90
F++ + LI TL GH+ + V W I+ S S+D + IW E G + A+
Sbjct: 37 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 96
Query: 91 VKSTFSSHKEWVQSVRWSPID--PQLFVSASFDNSVKLWDLRSPKV--PLFDMLGHEDKV 146
+ H V SV+W+P + P L V AS D V + + + P+ + H V
Sbjct: 97 ----HAVHSASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENGTTSPII-IDAHAIGV 150
Query: 147 MCVNWS--------------DYRYIMSGGQDNSVRVFK 170
+W+ + R ++GG DN V+++K
Sbjct: 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 188
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITSSW-DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
+ TL GH + + ++W + S D+ + +W + G + G + TF+ H+ V+
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG--EGGWVPLQTFTQHQGAVK 280
Query: 104 SVRWSPIDPQLFVS--ASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSG 160
+V W P + + + D +++W++ S + +V + WS Y+ ++SG
Sbjct: 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHSQVCSILWSPHYKELISG 338
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 18/137 (13%)
Query: 39 ILQKTPLITLKGHKEAISAVQWTAVDEII---TSSWDHTLKIWDAELGGMKKGAIVKSTF 95
ILQ L+ ++ E IS+V W + TSS + +++WD + +
Sbjct: 137 ILQ---LLQMEQPGEYISSVAWIKEGNYLAVGTSSAE--VQLWDVQQQKRLR------NM 185
Query: 96 SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DY 154
+SH V S+ W + + S S + D+R + + + GH +V + W+ D
Sbjct: 186 TSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 242
Query: 155 RYIMSGGQDNSVRVFKT 171
R++ SGG DN V V+ +
Sbjct: 243 RHLASGGNDNLVNVWPS 259
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 44 PLITLKGHKEAISAVQWTAVDEIITSSW----DHTLKIWDAELGGMKKGAIVKSTFSSHK 99
PL T H+ A+ AV W + ++ D ++IW+ + GA + S +H
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN-----VCSGACL-SAVDAHS 321
Query: 100 EWVQSVRWSPIDPQLFVSASF-DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYI 157
+ V S+ WSP +L F N + +W + + ++ GH +V+ + S D +
Sbjct: 322 Q-VCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATV 379
Query: 158 MSGGQDNSVRVFKT 171
S D ++R+++
Sbjct: 380 ASAAADETLRLWRC 393
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITSSW-DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103
+ TL GH + + ++W + S D+ + +W + G + G + TF+ H+ V+
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG--EGGWVPLQTFTQHQGAVK 200
Query: 104 SVRWSPIDPQLFVS--ASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSG 160
+V W P + + + D +++W++ S + +V + WS Y+ ++SG
Sbjct: 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHSQVCSILWSPHYKELISG 258
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 18/137 (13%)
Query: 39 ILQKTPLITLKGHKEAISAVQWTAVDEII---TSSWDHTLKIWDAELGGMKKGAIVKSTF 95
ILQ L+ ++ E IS+V W + TSS + +++WD + +
Sbjct: 57 ILQ---LLQMEQPGEYISSVAWIKEGNYLAVGTSSAE--VQLWDVQQQKRLR------NM 105
Query: 96 SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DY 154
+SH V S+ W + + S S + D+R + + + GH +V + W+ D
Sbjct: 106 TSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162
Query: 155 RYIMSGGQDNSVRVFKT 171
R++ SGG DN V V+ +
Sbjct: 163 RHLASGGNDNLVNVWPS 179
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 44 PLITLKGHKEAISAVQWTAVDEIITSSW----DHTLKIWDAELGGMKKGAIVKSTFSSHK 99
PL T H+ A+ AV W + ++ D ++IW+ + GA + S +H
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN-----VCSGACL-SAVDAHS 241
Query: 100 EWVQSVRWSPIDPQLFVSASF-DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYI 157
+ V S+ WSP +L F N + +W + + ++ GH +V+ + S D +
Sbjct: 242 Q-VCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATV 299
Query: 158 MSGGQDNSVRVFKT 171
S D ++R+++
Sbjct: 300 ASAAADETLRLWRC 313
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 23/138 (16%)
Query: 6 FGILTLGVIFMTVGAL---LTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA 62
FG +L ++ G L + N+E +P + ++KGHKE I+A+
Sbjct: 73 FGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY-----------SVKGHKEIINAIDGIG 121
Query: 63 -------VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE-WVQSVRWSPIDPQL 114
EI+T S D T+K+WD + + ++ W + + +
Sbjct: 122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER 181
Query: 115 FVSASFDNS-VKLWDLRS 131
V A +DN +KL+DLR+
Sbjct: 182 VVCAGYDNGDIKLFDLRN 199
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/69 (17%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 113 QLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRY-------IMSGGQDNS 165
+ + F ++ +W+L +P++P++ + GH++ + ++ I++G +D +
Sbjct: 81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140
Query: 166 VRVFKTKHQ 174
V+V+ + +
Sbjct: 141 VKVWDPRQK 149
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 62 AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD 121
++++++ +S + ++D KG + +HK V VR P + +LF++A
Sbjct: 223 SMNKLVATSLEGKFHVFDMRTQHPTKG-FASVSEKAHKSTVWQVRHLPQNRELFLTAGGA 281
Query: 122 NSVKLWDLRSP 132
+ LW P
Sbjct: 282 GGLHLWKYEYP 292
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 65 EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP--IDPQLFVSASFDN 122
+ +T D+ +KIW + + +++ST H +WV+ V WSP + S S D
Sbjct: 172 KFVTGGADNLVKIW--KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNW------SDYRYIMSGGQDNSVRVFKTKHQPK 176
+ +W + + P L E+K V W S +SGG DN V ++K + K
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEGK 288
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 28/158 (17%)
Query: 35 FFQLILQKTPLI-TLKGHKEAISAVQWT--AVDEIITS-SWDHTLKIWDAELGGMKKGAI 90
F++ + LI TL GH+ + V W I+ S S+D + IW E G + A+
Sbjct: 35 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 94
Query: 91 VKSTFSSHKEWVQSVRWSPID--PQLFVSASFDNSVKLWDLRSPKV--PLFDMLGHEDKV 146
+ H V SV+W+P + P L V AS D V + + + P+ + H V
Sbjct: 95 ----HAVHSASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENGTTSPII-IDAHAIGV 148
Query: 147 MCVNWS--------------DYRYIMSGGQDNSVRVFK 170
+W+ + R ++GG DN V+++K
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 65 EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS- 123
++ + + + +W+A+ G + A+ ++ S+ +V SV+WS F+S N
Sbjct: 105 NVVAVALERNVYVWNADSGSVS--ALAETDEST---YVASVKWS--HDGSFLSVGLGNGL 157
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGG 161
V ++D+ S + L M GH+ +V C++W+ R+++S G
Sbjct: 158 VDIYDVES-QTKLRTMAGHQARVGCLSWN--RHVLSSG 192
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 94 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW-S 152
T + H+ V + W + + S S ++ D+R + + GH +V + W S
Sbjct: 171 TMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227
Query: 153 DYRYIMSGGQDNSVRVFKTK 172
D + SGG DN V+++ +
Sbjct: 228 DGLQLASGGNDNVVQIWDAR 247
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 65 EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP--IDPQLFVSASFDN 122
+ +T D+ +KIW + + +++ST H +WV+ V WSP + S S D
Sbjct: 172 KFVTGGADNLVKIW--KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229
Query: 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNW------SDYRYIMSGGQDNSVRVFKTKHQPK 176
+ +W + + P L E+K V W S +SGG DN V ++K + K
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEGK 288
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 28/158 (17%)
Query: 35 FFQLILQKTPLI-TLKGHKEAISAVQWT--AVDEIITS-SWDHTLKIWDAELGGMKKGAI 90
F++ + LI TL GH+ + V W I+ S S+D + IW E G + A+
Sbjct: 35 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV 94
Query: 91 VKSTFSSHKEWVQSVRWSPID--PQLFVSASFDNSVKLWDLRSPKV--PLFDMLGHEDKV 146
+ H V SV+W+P + P L V AS D V + + + P+ + H V
Sbjct: 95 ----HAVHSASVNSVQWAPHEYGPMLLV-ASSDGKVSVVEFKENGTTSPII-IDAHAIGV 148
Query: 147 MCVNWS--------------DYRYIMSGGQDNSVRVFK 170
+W+ + R ++GG DN V+++K
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 65 EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP--IDPQLFVSASFDN 122
+ +T D+ +KIW + + +++ST H +WV+ V WSP + S S D
Sbjct: 172 KFVTGGADNLVKIW--KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDR 229
Query: 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNW------SDYRYIMSGGQDNSVRVFKTKHQPK 176
+ +W + + P L E+K V W S +SGG DN V ++K + K
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEGK 288
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 28/158 (17%)
Query: 35 FFQLILQKTPLI-TLKGHKEAISAVQWT--AVDEIITS-SWDHTLKIWDAELGGMKKGAI 90
F++ + LI TL GH+ + V W I+ S S+D + IW E G + A+
Sbjct: 35 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAV 94
Query: 91 VKSTFSSHKEWVQSVRWSPID--PQLFVSASFDNSVKLWDLRSPKV--PLFDMLGHEDKV 146
+ H V SV+W+P + P L V AS D V + + + P+ + H V
Sbjct: 95 ----HAVHSASVNSVQWAPHEYGPXLLV-ASSDGKVSVVEFKENGTTSPII-IDAHAIGV 148
Query: 147 MCVNWS--------------DYRYIMSGGQDNSVRVFK 170
+W+ + R ++GG DN V+++K
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS--PKVPLFDMLGHEDKVMCV--NWSD 153
HK V ++P L ++S D +VKLWDLR+ K + HE V N +D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 154 YRYIMSGGQDNSVRVFKT 171
+++ Q N +RV+ +
Sbjct: 262 STKLLTTDQRNEIRVYSS 279
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS--PKVPLFDMLGHEDKVMCV--NWSD 153
HK V ++P L ++S D +VKLWDLR+ K + HE V N +D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 154 YRYIMSGGQDNSVRVFKT 171
+++ Q N +RV+ +
Sbjct: 263 STKLLTTDQRNEIRVYSS 280
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.1 bits (74), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS--PKVPLFDMLGHEDKVMCVNWS-DY 154
HK+ V V +P +AS D +VK+WDLR K L H V +S D
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 155 RYIMSGGQDNSVRVF 169
+++ Q + +RV+
Sbjct: 310 ARLLTTDQKSEIRVY 324
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.1 bits (74), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS--PKVPLFDMLGHEDKVMCVNWS-DY 154
HK+ V V +P +AS D +VK+WDLR K L H V +S D
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 155 RYIMSGGQDNSVRVF 169
+++ Q + +RV+
Sbjct: 309 ARLLTTDQKSEIRVY 323
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.1 bits (74), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS--PKVPLFDMLGHEDKVMCVNWS-DY 154
HK+ V V +P +AS D +VK+WDLR K L H V +S D
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 155 RYIMSGGQDNSVRVF 169
+++ Q + +RV+
Sbjct: 309 ARLLTTDQKSEIRVY 323
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 51 HKEAIS-----------AVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK 99
HKEA+ AV + EI+T + LKIWD G + I+ + + +
Sbjct: 179 HKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQIL--SLTGDR 236
Query: 100 EWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW--SDYRYI 157
+ V P + + D + +WD+R +P+ + HE ++ V++ S+ ++
Sbjct: 237 VPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHL 296
Query: 158 MSGGQDNSV 166
+ +D S+
Sbjct: 297 FTCSEDGSL 305
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 18/110 (16%)
Query: 72 DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP---IDPQLFVSASFDNSVKLWD 128
D+ +K+W E G K + +H +WV+ V W+P + S S D V +W
Sbjct: 188 DNLIKLWKEEEDGQWK---EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244
Query: 129 LR-------SPKVPLFDMLGHEDKVMCVNWSDYRYIMS-GGQDNSVRVFK 170
SPK+ + D V V+WS I++ G DN V ++K
Sbjct: 245 CDDASSNTWSPKL----LHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 40 LQKTPLITLKGHKEAISAVQWTAVDE---IITSSWDHTLKIWD 79
L I + H + + W ++T SWD TLK WD
Sbjct: 115 LSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 65 EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRW-SPIDPQLFVSASFDNS 123
++ T+S D T K+WD + ++ + H V+++ W + ++ S+D +
Sbjct: 100 KVFTASCDKTAKMWD-----LSSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKT 152
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMS--GGQDNSVRVFKTKHQP 175
+K WD RS P+ +L ++ C +D Y M+ + + V++ ++QP
Sbjct: 153 LKFWDTRSSN-PMM-VLQLPERCYC---ADVIYPMAVVATAERGLIVYQLENQP 201
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 64 DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+++I DH + DA MK+ + +S ++ + + PI + +SA ++
Sbjct: 17 EDLIRQLKDHGVIASDAVAQAMKE--TDRKHYSPRNPYMDAPQ--PIGGGVTISAPHMHA 72
Query: 124 VKLWDLRS---PKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKSGQK 180
L LR P + D +G + + YRYI + G D R+ +HQ + ++
Sbjct: 73 FALEYLRDHLKPGARILD-VGSGSGYLTACF--YRYIKAKGVDADTRIVGIEHQAELVRR 129
Query: 181 SKA 183
SKA
Sbjct: 130 SKA 132
>pdb|1G8K|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|E Chain E, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|G Chain G, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 28.5 bits (62), Expect = 2.2, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 52 KEAISAVQWTAVDEIITSSWDHTLKIW 78
KE +SA + A DE + ++WDH + ++
Sbjct: 117 KERLSAPRLYAADEWVDTTWDHAMALY 143
>pdb|1G8J|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8J|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 28.5 bits (62), Expect = 2.2, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 52 KEAISAVQWTAVDEIITSSWDHTLKIW 78
KE +SA + A DE + ++WDH + ++
Sbjct: 117 KERLSAPRLYAADEWVDTTWDHAMALY 143
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 97 SHKEWVQSVRWSPIDPQLFVSASFDN------SVKLWDLRSPKVPL 136
S KEW +S + P+ +LF D+ KLW R P VPL
Sbjct: 241 STKEWAKSTGYDPV--KLFTKLFKDDIRYLLTMDKLWRKRKPPVPL 284
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 97 SHKEWVQSVRWSPIDPQLFVSASFDN------SVKLWDLRSPKVPL 136
S KEW +S + P+ +LF D+ KLW R P VPL
Sbjct: 259 STKEWAKSTGYDPV--KLFTKLFKDDIRYLLTMDKLWRKRKPPVPL 302
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 46 ITLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
I L GH+ ++ V++ D + + S D + +W L G + G T H +
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVW-YSLNGERLG-----TLDGHTGTI-- 77
Query: 105 VRWSPIDPQLF----VSASFDNSVKLWDLRSPKV 134
WS ID F V+ S D S+KLWD+ + +
Sbjct: 78 --WS-IDVDCFTKYCVTGSADYSIKLWDVSNGQC 108
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 97 SHKEWVQSVRWSPIDPQLFVSASFDN------SVKLWDLRSPKVPL 136
S KEW +S + P+ +LF D+ KLW R P VPL
Sbjct: 239 STKEWAKSTGYDPV--KLFTKLFKDDIRYLLTMDKLWRKRKPPVPL 282
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 115 FVSASFDNS-VKLWDLRSPKVPLFDMLGHEDK-VMCVNWSDYRYIMSGGQDNSVRV 168
++ A ++N + WDLRSP+ P+ + L +E + V ++ +S G D S+++
Sbjct: 305 YIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL 360
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 64 DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPID-PQLFVSASFDN 122
+ +I+SS D LKIW + G + T H+ V + + ID + +SAS D
Sbjct: 152 EALISSSQDMQLKIWSVKDGSNPR------TLIGHRATVTDI--AIIDRGRNVLSASLDG 203
Query: 123 SVKLWDL 129
+++LW+
Sbjct: 204 TIRLWEC 210
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 115 FVSASFDNS-VKLWDLRSPKVPLFDMLGHEDK-VMCVNWSDYRYIMSGGQDNSVRV 168
++ A ++N + WDLRSP+ P+ + L +E + V ++ +S G D S+++
Sbjct: 302 YIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL 357
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDP-QLFVSASFDNSV 124
+I+SS D LKIW + G + T H+ V + + ID + +SAS D ++
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPR------TLIGHRATVTDI--AIIDRGRNVLSASLDGTI 202
Query: 125 KLWDL 129
+LW+
Sbjct: 203 RLWEC 207
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 1 MSTNKFGILTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQW 60
+ + G +GV+ G +++L+ + +F++L + L T+ GH + I+A+
Sbjct: 292 LDKQQLGNQQVGVVATGNGRIISLS---LDGTLNFYELGHDEV-LKTISGHNKGITAL-- 345
Query: 61 TAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRW 107
V+ +I+ S+D + W + ++ S +S + S+ W
Sbjct: 346 -TVNPLISGSYDGRIXEWSSSSXHQDHSNLIVSLDNSKAQEYSSISW 391
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 102 VQSVRWSP---------IDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152
+ ++ W P I+ L + S D ++ ++ ++ P + + H+D V + W
Sbjct: 534 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWE 593
Query: 153 DYRYIMSGGQDNSVR 167
++S G D ++
Sbjct: 594 TPSTLVSSGADACIK 608
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 34 SFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKS 93
S FQ IL K P T +G+ WT DEI + ++W E K + K
Sbjct: 176 SLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEF----QLWQIE--NYKPDKVYKV 229
Query: 94 TFSSHK 99
HK
Sbjct: 230 EGGDHK 235
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 34 SFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKS 93
S FQ IL K P T +G+ WT DEI + ++W E K + K
Sbjct: 177 SLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEF----QLWQIE--NYKPDKVYKV 230
Query: 94 TFSSHK 99
HK
Sbjct: 231 EGGDHK 236
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 34 SFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKS 93
S FQ IL K P T +G+ WT DEI + ++W E K + K
Sbjct: 177 SLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEF----QLWQIE--NYKPDKVYKV 230
Query: 94 TFSSHK 99
HK
Sbjct: 231 EGGDHK 236
>pdb|1M32|A Chain A, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|B Chain B, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|C Chain C, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|D Chain D, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|E Chain E, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|F Chain F, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
Length = 366
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 2 STNKFGILTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAIS---AV 58
+ + FG + + + + L++ N + +P F +I ++ L KGH ++S
Sbjct: 168 AXSSFGGIPXDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYA 227
Query: 59 QWTAVDE 65
QW ++
Sbjct: 228 QWRCXED 234
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 23/129 (17%)
Query: 49 KGHKEAISAVQWTAVDE---IITSSWDHTLKIWD-----AELGGMKKGAIVKSTFSSHKE 100
+ H +I A+ W + + I ++S+D T+K+W+ E G + + T + K
Sbjct: 54 RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLC--TLNDSKG 111
Query: 101 WVQSVRWSPIDPQLFVSA-SFDNSVKLWDLRSP------------KVPLFDMLGHEDKVM 147
+ SV+++P L ++ D ++L+D P KV H
Sbjct: 112 SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDF 171
Query: 148 CVNWSDYRY 156
C++W R+
Sbjct: 172 CLSWCPSRF 180
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 23/129 (17%)
Query: 49 KGHKEAISAVQWTAVDE---IITSSWDHTLKIWD-----AELGGMKKGAIVKSTFSSHKE 100
+ H +I A+ W + + I ++S+D T+K+W+ E G + + T + K
Sbjct: 52 RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLC--TLNDSKG 109
Query: 101 WVQSVRWSPIDPQLFVSA-SFDNSVKLWDLRSP------------KVPLFDMLGHEDKVM 147
+ SV+++P L ++ D ++L+D P KV H
Sbjct: 110 SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDF 169
Query: 148 CVNWSDYRY 156
C++W R+
Sbjct: 170 CLSWCPSRF 178
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 23/129 (17%)
Query: 49 KGHKEAISAVQWTAVDE---IITSSWDHTLKIWD-----AELGGMKKGAIVKSTFSSHKE 100
+ H +I A+ W + + I ++S+D T+K+W+ E G + + T + K
Sbjct: 54 RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLC--TLNDSKG 111
Query: 101 WVQSVRWSPIDPQLFVSA-SFDNSVKLWDLRSPKVPLFDMLGHEDKVM------------ 147
+ SV+++P L ++ D ++L+D P L E KV+
Sbjct: 112 SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDF 171
Query: 148 CVNWSDYRY 156
C++W R+
Sbjct: 172 CLSWCPSRF 180
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 34 SFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAE 81
S FQ IL K P T +G+ WT DEI + ++W E
Sbjct: 177 SLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEF----QLWQIE 220
>pdb|1PN9|A Chain A, Crystal Structure Of An Insect Delta-class Glutathione S-
Transferase From A Ddt-resistant Strain Of The Malaria
Vector Anopheles Gambiae
pdb|1PN9|B Chain B, Crystal Structure Of An Insect Delta-class Glutathione S-
Transferase From A Ddt-resistant Strain Of The Malaria
Vector Anopheles Gambiae
Length = 209
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 110 IDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKV 146
++PQ + DN LW+ R+ ++ L + G +DK+
Sbjct: 46 LNPQHCIPTLVDNGFALWESRAIQIYLAEKYGKDDKL 82
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 102 VQSVRWSP---------IDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152
+ ++ W P I+ L + S D ++ ++ ++ P + + H+D V + W
Sbjct: 534 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 593
Query: 153 DYRYIMSGGQDNSVR 167
++S G D ++
Sbjct: 594 TPSTLVSSGADACIK 608
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,583,079
Number of Sequences: 62578
Number of extensions: 210531
Number of successful extensions: 1091
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 345
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)