RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2113
(183 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 75.2 bits (183), Expect = 5e-17
Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 41 QKTPLITLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK 99
+ T GH+ I+A+ + + T S D T +++D ++ + +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD----LRADQELMTYSHDNII 270
Query: 100 EWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIM 158
+ SV +S +L ++ D + +WD + GH+++V C+ + D +
Sbjct: 271 CGITSVSFSK-SGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 159 SGGQDNSVRVF 169
+G D+ ++++
Sbjct: 329 TGSWDSFLKIW 339
Score = 56.3 bits (134), Expect = 2e-10
Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 67 ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKL 126
++ + D + K+WD G ++ TF+ H+ + ++ + P + F + S D + +L
Sbjct: 200 VSGACDASAKLWDVREGMCRQ------TFTGHESDINAICFFP-NGNAFATGSDDATCRL 252
Query: 127 -WDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172
++ + + V++S R +++G D + V+
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Score = 55.5 bits (132), Expect = 4e-10
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 51 HKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP 109
I++V ++ ++ D +WDA + H V + +
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG------VLAGHDNRVSCLGVTD 322
Query: 110 IDPQLFVSASFDNSVKLWD 128
D + S+D+ +K+W+
Sbjct: 323 -DGMAVATGSWDSFLKIWN 340
Score = 44.7 bits (104), Expect = 2e-06
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRY 156
D +LFVS + D S KLWD+R GHE + + + +
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNA 240
Query: 157 IMSGGQDNSVRVFKTKHQP 175
+G D + R+F +
Sbjct: 241 FATGSDDATCRLFDLRADQ 259
Score = 39.7 bits (91), Expect = 9e-05
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 39 ILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79
L+ L GH +S + T + T SWD LKIW+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 37.8 bits (86), Expect = 3e-04
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 91 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN 150
+ T H + ++ W D +L VSAS D + +WD + + + VM
Sbjct: 47 TRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCA 104
Query: 151 WS 152
++
Sbjct: 105 YA 106
Score = 36.3 bits (82), Expect = 0.001
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 8/113 (7%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TL+GH I A+ W ++++S D L IWD+ WV +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH------AIPLRSSWVMTC 103
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
++P DN +++L++ + + ++ +
Sbjct: 104 AYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 74.4 bits (181), Expect = 1e-16
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 16/161 (9%)
Query: 26 NIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84
+ V + F + + + GHK+++ +V +T + +++ S D ++K+W+ +
Sbjct: 228 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287
Query: 85 MKK------GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFD 138
K + T+ HK++V SV + + + +S S D V WD +S PL
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGN-PLLM 345
Query: 139 MLGHEDKVMCVNWS-------DYRYIMSGGQDNSVRVFKTK 172
+ GH + V+ V + +Y +G D R++K K
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
Score = 54.0 bits (128), Expect = 1e-09
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 24 LTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82
L N++ + S + T +T GHK+ + +V T DE I++ S D + WD +
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339
Query: 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPI-----DPQLFVSASFDNSVKLWDLR 130
G H+ V SV + + +F + S D ++W +
Sbjct: 340 GNPLL------MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
Score = 46.7 bits (109), Expect = 4e-07
Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 13/142 (9%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAE------------LGGMKKGAIVK 92
L H + V+++ E + + + T +++ +
Sbjct: 55 LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114
Query: 93 STFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152
S+ S +++SV +SP D + + + D +++WD+ + K+ + +D +
Sbjct: 115 SSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173
Query: 153 DYRYIMSGGQDNSVRVFKTKHQ 174
++SG D +VR++ +
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTG 195
Score = 33.2 bits (74), Expect = 0.012
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 121 DNSVKLWDLRSPK---VPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQ 174
++ L++ P+ V L L H V CV +S D Y+ +G + + +V++
Sbjct: 37 NDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG 93
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 72.5 bits (176), Expect = 3e-16
Identities = 24/106 (22%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+++ S D T+K+WD G T H WV+ V + + +S + D +++
Sbjct: 220 LLSGSRDKTIKMWDVSTGMCLM------TLVGHDNWVRGVLFHS-GGKFILSCADDKTLR 272
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFK 170
+WD ++ + + + HE V +++ Y+++G D +V+V++
Sbjct: 273 VWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 52.4 bits (124), Expect = 4e-09
Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 28/151 (18%)
Query: 43 TPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
+ T GH+E + V+ I + S D T+++W K+ H+
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA------TKECKAELREHRHV 187
Query: 102 VQSVRW-------------------SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGH 142
V+ + W S +S S D ++K+WD+ + L ++GH
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGH 246
Query: 143 EDKVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172
++ V V + ++I+S D ++RV+ K
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277
Score = 51.7 bits (122), Expect = 7e-09
Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 39 ILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSS 97
I + L GH+ ++ V + V ++++S D T+K+WD E G ++ T
Sbjct: 4 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER------TLKG 57
Query: 98 HKEWVQSVRWSPI-----------------------------------------DPQLFV 116
H + VQ + + + V
Sbjct: 58 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 117
Query: 117 SASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVF 169
SAS D ++K+W++++ + GH + V V + D I S D +VRV+
Sbjct: 118 SASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
Score = 37.8 bits (86), Expect = 4e-04
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79
K + TL H+ ++++ + ++T S D T+K+W+
Sbjct: 279 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 63.3 bits (152), Expect = 8e-13
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 22/144 (15%)
Query: 47 TLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGA------IVKSTFSSHKE 100
K H I +V ++ S D LK+WD +L + V + H +
Sbjct: 9 AGKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP---------KVPLFDMLGHEDKVMCVNW 151
+Q++ + L + SF + + + K+ L D + + W
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127
Query: 152 S------DYRYIMSGGQDNSVRVF 169
+++ + ++
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIW 151
Score = 43.3 bits (100), Expect = 6e-06
Identities = 17/177 (9%), Positives = 49/177 (27%), Gaps = 27/177 (15%)
Query: 26 NIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELG 83
+ ++ + + H + + A++ A + + T+S+ L +
Sbjct: 40 DNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE 99
Query: 84 GMKKGAIVKS----TFSSHKEWVQSVRWSP----IDPQLFVSASFDNSVKLWDLRSPK-- 133
K I + K +++W + V+ + +W
Sbjct: 100 DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159
Query: 134 ---------------VPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQP 175
+ + V+ S+ I +G + +V++ +
Sbjct: 160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLR 216
Score = 39.1 bits (89), Expect = 1e-04
Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 71 WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130
++ L + +H WV S+ ++ SA +D ++ WD++
Sbjct: 261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVK 319
Query: 131 SPKVPLFDMLGHEDKVMCVNWS-----DYRYIMSGG 161
+ + + + H D + + G
Sbjct: 320 TKE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
Score = 32.1 bits (71), Expect = 0.035
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 141 GHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
H+ + V+ + + +S D ++V+ K
Sbjct: 12 AHDADIFSVSACN-SFTVSCSGDGYLKVWDNK 42
Score = 31.7 bits (70), Expect = 0.038
Identities = 14/112 (12%), Positives = 34/112 (30%), Gaps = 26/112 (23%)
Query: 64 DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ----SVRWSPIDPQLFVSAS 119
+ + ++ WD L+ WD + T + H + ++ +
Sbjct: 302 ETLCSAGWDGKLRFWDVKTKERIT------TLNMHCDDIEIEEDILAVDE-HGDSLAEPG 354
Query: 120 FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKT 171
++D++ K +G + + D S+R F+
Sbjct: 355 ------VFDVKFLKKGWRSGMGADLNES---------LCCVCLDRSIRWFRE 391
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 61.0 bits (146), Expect = 5e-12
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRY 156
H+ V S++++ + FVS DN + W V+ + S D +Y
Sbjct: 264 HESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGA--SIFQSKESSSVLSCDISVDDKY 320
Query: 157 IMSGGQDNSVRVFK 170
I++G D V++
Sbjct: 321 IVTGSGDKKATVYE 334
Score = 52.1 bits (123), Expect = 6e-09
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 51 HKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP 109
H+ + ++++ + +++ D+ L W GA + + V S S
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWR-----TPYGASIFQS--KESSSVLSCDISV 316
Query: 110 IDPQLFVSASFDNSVKLWDL 129
D + V+ S D ++++
Sbjct: 317 -DDKYIVTGSGDKKATVYEV 335
Score = 47.1 bits (110), Expect = 2e-07
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 2/114 (1%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
I H E + AV + + + +K+WD G K + + + +++S
Sbjct: 44 QINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP-VSQLDCLNRDNYIRS 102
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
+ P D + +++ +WDL +P + L +
Sbjct: 103 CKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155
Score = 32.5 bits (72), Expect = 0.022
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSG 160
S + V D + R + + L H + V V S R++ +G
Sbjct: 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHAR--QINTLNHGEVVCAVTISNPTRHVYTG 69
Query: 161 GQDNSVRVFKTKHQP 175
G V+V+ H
Sbjct: 70 G-KGCVKVWDISHPG 83
Score = 30.9 bits (68), Expect = 0.073
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 1/104 (0%)
Query: 70 SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129
S D T ++ + + ++ + P A S + L
Sbjct: 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251
Query: 130 RSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172
K + + HE V+ + ++ ++ +S G+DN + ++T
Sbjct: 252 HVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 56.4 bits (134), Expect = 2e-10
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 93 STFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML-GHEDKVMCVNW 151
+ S E + W+ D ++ V +++ K L H +V V+W
Sbjct: 1 AYHSFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 59
Query: 152 S-DYRYIMSGGQDNSVRVFKTKHQP 175
+ D I++ G D + V+ K +
Sbjct: 60 APDSNRIVTCGTDRNAYVWTLKGRT 84
Score = 55.2 bits (131), Expect = 4e-10
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 6/109 (5%)
Query: 51 HKEAISAVQWTAVDEII-TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP 109
E IS W I +H + I++ + H V V W+P
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ----VHELKEHNGQVTGVDWAP 61
Query: 110 IDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
D V+ D + +W L+ ++ ++
Sbjct: 62 -DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 109
Score = 46.0 bits (107), Expect = 7e-07
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 9/101 (8%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
++ G + + + D + A S HK
Sbjct: 274 AAGKLSFGGRLDVPKQSSQR------GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 327
Query: 102 VQSVRWSP---IDPQLFVSASFDNSVKLWDLRSPKVPLFDM 139
V + F + D + +WD+RS + L D+
Sbjct: 328 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDL 368
Score = 37.5 bits (85), Expect = 5e-04
Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 10/137 (7%)
Query: 41 QKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK 99
+ + LK H ++ V W I+T D +W + K ++ + +
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
Query: 100 EWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN----WSDYR 155
+ + F S + + + V +
Sbjct: 100 CV-----RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 154
Query: 156 YIMSGGQDNSVRVFKTK 172
+ +G D R+F
Sbjct: 155 LLAAGSCDFKCRIFSAY 171
Score = 32.9 bits (73), Expect = 0.019
Identities = 15/130 (11%), Positives = 37/130 (28%), Gaps = 20/130 (15%)
Query: 51 HKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK---KGAIVKSTFSSHKEWVQSVRW 107
+ AV + ++ + D ++ + K G + SS + R+
Sbjct: 242 ETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF 301
Query: 108 SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-----DYRYIMSGGQ 162
+D + S L H++ V ++ + G
Sbjct: 302 QNLDKKASSEGSAAAGAGLDS------------LHKNSVSQISVLSGGKAKCSQFCTTGM 349
Query: 163 DNSVRVFKTK 172
D + ++ +
Sbjct: 350 DGGMSIWDVR 359
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 56.4 bits (134), Expect = 2e-10
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 94 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR--SPKVPLFDMLGHEDKVMCVNW 151
+ K+++ ++ P L + S+D S+ ++ + V L L ++ ++C N+
Sbjct: 6 IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 152 SD 153
D
Sbjct: 65 ID 66
Score = 54.1 bits (128), Expect = 1e-09
Identities = 11/113 (9%), Positives = 31/113 (27%), Gaps = 4/113 (3%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
+ K+ IS ++ ++ +SWD +L ++ ++ +K +
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV---DLLQSLRYKHPLLCC 62
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
+ + + DL + +C +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKL 115
Score = 49.1 bits (115), Expect = 5e-08
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 2/117 (1%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+ +D +++ + + ++ V S+ +SP + +A D +
Sbjct: 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIIS 276
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKSGQKSK 182
W+L++ K +ED V+ + SD + D++ + Q S
Sbjct: 277 CWNLQTRKKIKNFAKFNEDSVVKIACSD-NILCLATSDDTFKTNAAIDQTIELNASS 332
Score = 34.1 bits (76), Expect = 0.007
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 141 GHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPKSGQ 179
+D + + ++ D S+ V+K Q K+
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD 48
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 55.7 bits (132), Expect = 3e-10
Identities = 13/73 (17%), Positives = 31/73 (42%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYI 157
K + I+ L + S D ++ ++ ++ P + + H+D V + W +
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTL 272
Query: 158 MSGGQDNSVRVFK 170
+S G D ++ +
Sbjct: 273 VSSGADACIKRWN 285
Score = 48.4 bits (113), Expect = 1e-07
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 67 ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKL 126
T S D + I+ +K+ + ++HK+ V ++ W P VS+ D +K
Sbjct: 231 ATGSLDTNIFIYS-----VKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKR 283
Query: 127 WD 128
W+
Sbjct: 284 WN 285
Score = 46.5 bits (108), Expect = 4e-07
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 14/118 (11%)
Query: 41 QKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE 100
L T+ GH + I+A+ + +I+ S+D + W S H
Sbjct: 2 HDEVLKTISGHNKGITALTV---NPLISGSYDGRIMEWS-----------SSSMHQDHSN 47
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
+ S+ S +S V + D V +D ++
Sbjct: 48 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 105
Score = 45.0 bits (104), Expect = 1e-06
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 94 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD 153
T S H + + ++ +P+ +S S+D + W S H + ++ ++ S
Sbjct: 8 TISGHNKGITALTVNPL-----ISGSYDGRIMEWSSSSMHQ------DHSNLIVSLDNSK 56
Query: 154 YRYIMSG 160
+ S
Sbjct: 57 AQEYSSI 63
Score = 40.7 bits (93), Expect = 4e-05
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWD 79
+ L HK+ ++ + W +++S D +K W+
Sbjct: 248 MKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285
Score = 28.0 bits (60), Expect = 0.59
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 135 PLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
L + GH + + + ++SG D + + +
Sbjct: 5 VLKTISGHNKGITALTVN---PLISGSYDGRIMEWSSS 39
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 55.4 bits (131), Expect = 4e-10
Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 91 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN 150
+ H + + ++ S D + SA + + WD+ + H + +
Sbjct: 4 IDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 151 WSDYRYIMSGGQDNSVRVF 169
+ + + D+ ++V
Sbjct: 63 TTSKGDLFTVSWDDHLKVV 81
Score = 45.4 bits (105), Expect = 9e-07
Identities = 14/113 (12%), Positives = 39/113 (34%), Gaps = 8/113 (7%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
GH +AI+A+ +A + + ++ + + WD G + H + +
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS-----TGISNRVFPDVHATMITGI 61
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
+ + + S+D+ +K+ V + ++ + +
Sbjct: 62 KTTSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 112
Score = 45.0 bits (104), Expect = 1e-06
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 59 QWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 118
+ T S D+++ +W+ + + V SV W + VSA
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKP---SDHPIIIKGAHAMSSVNSVIWL--NETTIVSA 286
Query: 119 SFDNSVKLWDL 129
D+++K W++
Sbjct: 287 GQDSNIKFWNV 297
Score = 44.6 bits (103), Expect = 2e-06
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP--LFDMLGHEDKVMCVNWSDYR 155
+ D + S DNSV +W++ P + V V W +
Sbjct: 222 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 281
Query: 156 YIMSGGQDNSVRVF 169
I+S GQD++++ +
Sbjct: 282 TIVSAGQDSNIKFW 295
Score = 33.8 bits (75), Expect = 0.008
Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 141 GHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172
GH + ++ S D + + S + + +
Sbjct: 10 GHNKAITALSSSADGKTLFSADAEGHINSWDIS 42
Score = 32.6 bits (72), Expect = 0.018
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 41 QKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWD 79
+I ++++V W I+++ D +K W+
Sbjct: 258 DHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 54.9 bits (130), Expect = 7e-10
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYI 157
H + ++ + + VS S +N +++LRS K+ ++L D++ VN+ +
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLV 338
Query: 158 MSGGQDNSVRV 168
+ +D +
Sbjct: 339 AAVEKDGQSFL 349
Score = 53.4 bits (126), Expect = 2e-09
Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 46 ITLKGHKEA-ISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
TL+GH + I+ +Q+ + +IT + D ++++D+ S H V +
Sbjct: 6 TTLRGHMTSVITCLQFED-NYVITGADDKMIRVYDSINKKFLL------QLSGHDGGVWA 58
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDN 164
++++ + S V + V + + +YI++G +DN
Sbjct: 59 LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 165 SVRVFKTKHQ 174
++ V+K +
Sbjct: 119 TLHVWKLPKE 128
Score = 51.4 bits (121), Expect = 1e-08
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 51 HKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPI 110
H + + D I+ S ++ I++ ++ G +V + + + SV +
Sbjct: 281 HTNLSAITTFYVSDNILVSGSENQFNIYN-----LRSGKLVHANILKDADQIWSVNFKG- 334
Query: 111 DPQLFVSASFDNSVKLWDL 129
L + D L L
Sbjct: 335 -KTLVAAVEKDGQSFLEIL 352
Score = 39.5 bits (90), Expect = 1e-04
Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 5/134 (3%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
K L+ L GH + A+++ +++ S D T+++WD +KKG +
Sbjct: 43 KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD-----IKKGCCTHVFEGHNSTV 97
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGG 161
+ + V+ S DN++ +W L H+ ++ + Y +
Sbjct: 98 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157
Query: 162 QDNSVRVFKTKHQP 175
+ + V
Sbjct: 158 RGHMASVRTVSGHG 171
Score = 28.3 bits (61), Expect = 0.54
Identities = 3/33 (9%), Positives = 9/33 (27%)
Query: 47 TLKGHKEAISAVQWTAVDEIITSSWDHTLKIWD 79
+ + I +V + + D +
Sbjct: 319 NILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI 351
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 54.5 bits (129), Expect = 8e-10
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 43 TPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
+ TL GHK I+ +Q+ +++ S D+T+++WD E + +
Sbjct: 169 EFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIE---------CGACLRVLEGHE 218
Query: 103 QSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP--------LFDMLGHEDKVMCVNWSDY 154
+ VR D + VS ++D +K+WDL + P L ++ H +V + + +
Sbjct: 219 ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE- 277
Query: 155 RYIMSGGQDNSVRV 168
I+S D+++ +
Sbjct: 278 FQIVSSSHDDTILI 291
Score = 49.5 bits (116), Expect = 4e-08
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 40 LQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKK---GAIVKSTFS 96
++ + + E + I++ ++D +K+WD + G + T
Sbjct: 205 IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 264
Query: 97 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128
H V +++ D VS+S D+++ +WD
Sbjct: 265 EHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293
Score = 45.6 bits (106), Expect = 8e-07
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 93 STFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152
E + V D Q VS DN++K+WD + + + GH V+C+ +
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYD 64
Query: 153 DYRYIM 158
+ I
Sbjct: 65 ERVIIT 70
Score = 45.6 bits (106), Expect = 8e-07
Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
I+++S D T+K+W+ + + + +L VS S DN+++
Sbjct: 151 IVSASGDRTIKVWNTSTC---------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 201
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
LWD+ +L ++++ D + I+SG D ++V+
Sbjct: 202 LWDIECGA--CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246
Score = 35.6 bits (80), Expect = 0.002
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 71 WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130
D ++ +WD ++ H+ V V + D + VSAS D ++K+W+
Sbjct: 113 KDRSIAVWDMA---SPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTS 166
Query: 131 SPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQ 174
+ + + + GH+ + C+ + D R ++SG DN++R++ +
Sbjct: 167 TCE-FVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECG 208
Score = 34.4 bits (77), Expect = 0.005
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 47 TLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
+ E V D+ I++ D+T+KIWD K+ + H V
Sbjct: 7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR------ILTGHTGSVLC 60
Query: 105 VRWSP 109
+++
Sbjct: 61 LQYDE 65
Score = 28.7 bits (62), Expect = 0.35
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 141 GHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
V C+ + D + I+SG +DN+++++
Sbjct: 13 ETSKGVYCLQY-DDQKIVSGLRDNTIKIWDKN 43
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 52.1 bits (123), Expect = 6e-09
Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 43 TPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
+ TL GH+ S ++ + +++ + D T+KIWD + G + T +
Sbjct: 208 NCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQ------TLQGPNKHQ 260
Query: 103 QSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV----PLFDMLGHEDKVMCVNWS-DYRYI 157
+V + +++S D +VKLWDL++ + + G V + S
Sbjct: 261 SAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 320
Query: 158 MSGGQDNSVRVF 169
G ++ +
Sbjct: 321 AVGSRNGTEETK 332
Score = 45.6 bits (106), Expect = 9e-07
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 11/117 (9%)
Query: 59 QWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 118
+++ ++D +K+WD E T H V D VS
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLH------TLQGHTNRVY---SLQFDGIHVVSG 193
Query: 119 SFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQP 175
S D S+++WD+ + + + GH+ + D ++SG D++V+++ K
Sbjct: 194 SLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQ 248
Score = 44.8 bits (104), Expect = 1e-06
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 94 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD 153
H + V + VS S DN++K+W + K L ++GH V D
Sbjct: 11 VLKGHDDHVITC-LQF-CGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMRD 67
Query: 154 YRYIM 158
I
Sbjct: 68 NIIIS 72
Score = 44.4 bits (103), Expect = 2e-06
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 43 TPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
LKGH + + + I++ S D+TLK+W A G + T H V
Sbjct: 7 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLR------TLVGHTGGV 60
Query: 103 QSVRWSP 109
S +
Sbjct: 61 WSSQMRD 67
Score = 32.5 bits (72), Expect = 0.021
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 127 WDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
W K P + GH+D V+ I+SG DN+++V+
Sbjct: 1 WRRGELKSPKV-LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAV 45
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 50.3 bits (118), Expect = 2e-08
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
T D T+++WD + K T + Q V +S S D ++
Sbjct: 266 FATVGADATIRVWDVTTSKC----VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321
Query: 126 LWDL 129
++L
Sbjct: 322 FYEL 325
Score = 46.8 bits (109), Expect = 3e-07
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDMLGHEDKVMCVN--WSDY 154
S +D Q F + D ++++WD+ + K V + + + V +
Sbjct: 249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 308
Query: 155 RYIMSGGQDNSVRVFK 170
I+S D ++ ++
Sbjct: 309 GRIISLSLDGTLNFYE 324
Score = 36.0 bits (81), Expect = 0.002
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 96 SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV-PLFDMLGHE-DKVMCVNWS- 152
S+ + + + + P + V+ D KV P+ GH V V +S
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73
Query: 153 --DYRYIMSGGQDNSVRVFKTKH 173
+Y+ SG + V V+
Sbjct: 74 IKGSQYLCSGDESGKVIVWGWTF 96
Score = 33.0 bits (73), Expect = 0.015
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 11/95 (11%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPI-DPQLFVSASFDNSV 124
++ D G K V V +V++SPI Q S V
Sbjct: 33 AYPCGKSAFVRCLDD---GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV 89
Query: 125 KLWDLRSPKVP-------LFDMLGHEDKVMCVNWS 152
+W K + + ++W
Sbjct: 90 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 124
Score = 26.8 bits (57), Expect = 1.8
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 97 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMC---VNWSD 153
+V+ V +SP + ++ D + +D +S + + E ++W D
Sbjct: 203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 262
Query: 154 YRYIMSGGQDNSVRVFKTK 172
+ + G D ++RV+
Sbjct: 263 SQKFATVGADATIRVWDVT 281
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 50.6 bits (119), Expect = 2e-08
Identities = 10/149 (6%), Positives = 33/149 (22%), Gaps = 9/149 (6%)
Query: 27 IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK 86
+ + + + + + ++
Sbjct: 202 DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV 261
Query: 87 KGAIVKS--TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHED 144
+ S + A + +D+++ KV ++
Sbjct: 262 DPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLLKYDVKTRKV-----TEVKN 315
Query: 145 KVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172
+ + S D + +M D + F +
Sbjct: 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
Score = 42.2 bits (97), Expect = 1e-05
Identities = 11/88 (12%), Positives = 23/88 (26%), Gaps = 12/88 (13%)
Query: 47 TLKGHKEAISAVQWTAVDEII-TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
L+ S + L +D + + K + +
Sbjct: 271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----------KVTEVKNNLTDL 320
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPK 133
R S D + + D + + L P+
Sbjct: 321 RLSA-DRKTVMVRKDDGKIYTFPLEKPE 347
Score = 37.5 bits (85), Expect = 4e-04
Identities = 9/122 (7%), Positives = 25/122 (20%), Gaps = 9/122 (7%)
Query: 59 QWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKS-TFSSHKEWVQSVRWSPIDPQLFVS 117
+ S+ D + + K + P +
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP-RSMTSEA 244
Query: 118 ASFDNSVKLWDLRSPKVP---LFDMLGHEDKVMCVNW----SDYRYIMSGGQDNSVRVFK 170
+D + V ++ E ++ + Y + + +
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304
Query: 171 TK 172
K
Sbjct: 305 VK 306
Score = 31.8 bits (70), Expect = 0.036
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 104 SVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162
+ +SP+D L S + D+ V + ++ V D + G
Sbjct: 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK---VPEPLRIRYVRRGGDTKVAFIHGT 62
Query: 163 DNSVRVF 169
+
Sbjct: 63 REGDFLG 69
Score = 30.6 bits (67), Expect = 0.11
Identities = 4/42 (9%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKK 87
+ K ++ ++ +A + ++ D + + E ++
Sbjct: 309 KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 48.0 bits (112), Expect = 1e-07
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 3/113 (2%)
Query: 59 QWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 118
++ D T+ +++ G S + D SA
Sbjct: 197 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256
Query: 119 SFDNSVKLWDLRSPKVP--LFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVF 169
S D ++K+W++ + KV + ED+ + + W+ + ++S + +
Sbjct: 257 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK-QALVSISANGFINFV 308
Score = 46.0 bits (107), Expect = 6e-07
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
I ++S D T+KIW+ + + K+ + Q + Q VS S + +
Sbjct: 253 IASASADKTIKIWN-----VATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFIN 306
Query: 126 LWDL 129
+
Sbjct: 307 FVNP 310
Score = 43.0 bits (99), Expect = 6e-06
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Query: 89 AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMC 148
A+ S + + + +P + SV + S H +
Sbjct: 7 ALFPSLPRTARGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLT-DTEIYTEHSHQTTV 63
Query: 149 VNWS-DYRYIMSGGQDNSVRVFKTKHQP 175
S Y SG +VR++ T
Sbjct: 64 AKTSPSGYYCASGDVHGNVRIWDTTQTT 91
Score = 35.6 bits (80), Expect = 0.002
Identities = 12/103 (11%), Positives = 27/103 (26%), Gaps = 8/103 (7%)
Query: 57 AVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFV 116
+ T + I ++ + ++ H + SP
Sbjct: 22 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTE------IYTEHSHQTTVAKTSP-SGYYCA 74
Query: 117 SASFDNSVKLWDLRSPKVPLFDML-GHEDKVMCVNWSDYRYIM 158
S +V++WD L + V ++W +
Sbjct: 75 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117
Score = 29.1 bits (63), Expect = 0.28
Identities = 3/42 (7%), Positives = 11/42 (26%), Gaps = 2/42 (4%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAE 81
T+ + +++ S + + + E
Sbjct: 270 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
Score = 27.6 bits (59), Expect = 0.90
Identities = 9/117 (7%), Positives = 19/117 (16%), Gaps = 1/117 (0%)
Query: 43 TPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
T H + + + + ++IWD + K+
Sbjct: 49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
I F + S +
Sbjct: 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG 165
Score = 24.5 bits (51), Expect = 8.8
Identities = 4/31 (12%), Positives = 9/31 (29%)
Query: 142 HEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
D I S D +++++
Sbjct: 238 SGSVFGLTWSPDGTKIASASADKTIKIWNVA 268
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 46.3 bits (108), Expect = 5e-07
Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 10/108 (9%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+I +++ + L + D + KS K + +P + +V + +
Sbjct: 11 MIVTNYPNNLHVVDVA-----SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 65
Query: 126 LWDLRSPKVPLF-----DMLGHEDKVMCVNWSDYRYIMSGGQDNSVRV 168
DL + K + S + + + R+
Sbjct: 66 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL 113
Score = 45.9 bits (107), Expect = 6e-07
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
T+ + D +K G F+ E + SP DP N +
Sbjct: 223 PATADLLYGYLSVD-----LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLA 275
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172
+DL+ K+ + CV + + GG N + VF
Sbjct: 276 KYDLKQRKL--IKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321
Score = 40.5 bits (93), Expect = 5e-05
Identities = 9/93 (9%), Positives = 23/93 (24%), Gaps = 8/93 (8%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
KT E + D + L +D + + K ++
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK-------AANLDHT 293
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV 134
V + N + +++ + +
Sbjct: 294 YYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEK 325
Score = 34.3 bits (77), Expect = 0.005
Identities = 6/66 (9%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIM-SGGQDNSVRV 168
+ + ++ N++ + D+ S V ++ + + D R +
Sbjct: 7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66
Query: 169 FKTKHQ 174
Sbjct: 67 IDLDTC 72
Score = 34.3 bits (77), Expect = 0.006
Identities = 12/120 (10%), Positives = 31/120 (25%), Gaps = 12/120 (10%)
Query: 67 ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA-------- 118
+ ++ + D + A + S + S SP +++ +
Sbjct: 56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115
Query: 119 ---SFDNSVKLWDLRSPKVP-LFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQ 174
++++ +V + +D + G D KT
Sbjct: 116 HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKY 175
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 45.6 bits (106), Expect = 8e-07
Identities = 15/117 (12%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKS-TFSSHKEWVQSVRWSPIDPQLFVSASFDNSV 124
I+ + L + D +K A+ K T + +P + + + S+
Sbjct: 4 ILAPARPDKLVVIDT-----EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESL 58
Query: 125 KLWDLRSPKVPLFDMLGHEDKVMCVNWS-----DYRYIMSGGQDNSVRVFKTKHQPK 176
DL + + L ++ + + D + + + + + QP
Sbjct: 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115
Score = 44.4 bits (103), Expect = 2e-06
Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 11/124 (8%)
Query: 50 GHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP 109
G +D +++ L D ++ G + + S +P
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMD-----LETGEMAMREVRIMDVFYFSTAVNP 250
Query: 110 IDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRV 168
+ F N ++ +DL + VN S D + GG +
Sbjct: 251 AKTRAFG---AYNVLESFDLEKNAS--IKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAA 305
Query: 169 FKTK 172
+ +
Sbjct: 306 YDAE 309
Score = 32.9 bits (73), Expect = 0.015
Identities = 5/63 (7%), Positives = 17/63 (26%), Gaps = 3/63 (4%)
Query: 113 QLFVSASFDNSVKLWDLRSPKV-PLFDMLGHEDKVMCVNWS-DYRYIM-SGGQDNSVRVF 169
++ + + + + D V + + M + R + + S+
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 170 KTK 172
Sbjct: 62 DLV 64
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 42.9 bits (99), Expect = 7e-06
Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 67 ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKL 126
I +S + + D + + SP +++V+ + N V +
Sbjct: 6 IANSESDNISVIDVT-----SNKVTATI--PVGSNPMGAVISPDGTKVYVANAHSNDVSI 58
Query: 127 WDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
D + V G + + V+ + +
Sbjct: 59 IDTATNNVIATVPAGSSPQGVAVSPDGKQVYV 90
Score = 37.2 bits (84), Expect = 6e-04
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 91 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV 134
+ + + +P +++V+ SF N+V + D + +
Sbjct: 236 ITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278
Score = 32.2 bits (71), Expect = 0.026
Identities = 9/60 (15%), Positives = 24/60 (40%)
Query: 114 LFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKH 173
+++ S +++ + D+ S KV +G ++ + ++ N V + T
Sbjct: 4 AYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 40.2 bits (93), Expect = 6e-05
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 1/69 (1%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+ D + + D + A +K S + S D A +
Sbjct: 76 LFVIGRDGKVNMIDLWMKEPTTVAEIK-IGSEARSIETSKMEGWEDKYAIAGAYWPPQYV 134
Query: 126 LWDLRSPKV 134
+ D + +
Sbjct: 135 IMDGETLEP 143
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 37.5 bits (85), Expect = 4e-04
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 8/113 (7%)
Query: 67 ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKL 126
I S + +W+ +GA+ + VQ + SP L+V + V
Sbjct: 8 IASPESQQIHVWNLN----HEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63
Query: 127 WDL----RSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQP 175
+ + + L + + + +V V + +
Sbjct: 64 YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL 116
Score = 30.6 bits (67), Expect = 0.11
Identities = 5/76 (6%), Positives = 19/76 (25%), Gaps = 3/76 (3%)
Query: 54 AISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQ 113
A + + ++ G + K F + +
Sbjct: 233 ADIHITPDGRHLYACDRTASLITVFSVSEDG---SVLSKEGFQPTETQPRGFNVDHSGKY 289
Query: 114 LFVSASFDNSVKLWDL 129
L + + + ++++
Sbjct: 290 LIAAGQKSHHISVYEI 305
Score = 29.8 bits (65), Expect = 0.19
Identities = 9/60 (15%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 114 LFVSASFDNSVKLWDLRSP-KVPLFDMLGHEDKVMCVNWS-DYRYI-MSGGQDNSVRVFK 170
+++++ + +W+L + L ++ +V + S D RY+ + + V ++
Sbjct: 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 37.1 bits (84), Expect = 6e-04
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 64 DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP-IDPQLFVSASFDN 122
DE + + + DA+ G + S+ S P L+ ++ D
Sbjct: 271 DEWRHKTASRFVVVLDAKTGERLA-------KFEMGHEIDSINVSQDEKPLLYALSTGDK 323
Query: 123 SVKLWDLRSPKV 134
++ + D S +
Sbjct: 324 TLYIHDAESGEE 335
Score = 33.6 bits (75), Expect = 0.010
Identities = 5/71 (7%), Positives = 19/71 (26%), Gaps = 5/71 (7%)
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS---DYRYIMSGG 161
+ + + V + D ++ + ++ +N S
Sbjct: 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGER--LAKFEMGHEIDSINVSQDEKPLLYALST 320
Query: 162 QDNSVRVFKTK 172
D ++ + +
Sbjct: 321 GDKTLYIHDAE 331
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 36.5 bits (83), Expect = 0.001
Identities = 5/76 (6%), Positives = 19/76 (25%), Gaps = 6/76 (7%)
Query: 60 WTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPID-PQLFVSA 118
E S + + S+ ++ + + ++
Sbjct: 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPI-----SNGHDSDAIIAAQDGASDNYANS 333
Query: 119 SFDNSVKLWDLRSPKV 134
+ + ++D S +
Sbjct: 334 AGTEVLDIYDAASDQD 349
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 34.9 bits (79), Expect = 0.004
Identities = 9/115 (7%), Positives = 25/115 (21%), Gaps = 14/115 (12%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+T + + D + + + V R S + + D +
Sbjct: 35 SVTLRDAGQIALVDGDSKK------IVKVIDTG-YAVHISRMSA-SGRYLLVIGRDARID 86
Query: 126 LWDLRSPKV----PLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQ 174
+ DL + + + + I + +
Sbjct: 87 MIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141
Score = 30.7 bits (68), Expect = 0.10
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 114 LFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVF 169
V+ + L D S K+ ++ V S RY++ G+D + +
Sbjct: 34 FSVTLRDAGQIALVDGDSKKI--VKVIDTGYAVHISRMSASGRYLLVIGRDARIDMI 88
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 34.6 bits (78), Expect = 0.004
Identities = 9/104 (8%), Positives = 21/104 (20%), Gaps = 14/104 (13%)
Query: 72 DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN-SVKLWDLR 130
+ + S + V P F + ++ +
Sbjct: 95 TPAASVTVIDAV--------SKKMLSEIDTAACVLAYPAGDDRFTALCESGKALTVTLDA 146
Query: 131 SPKV--PLFDMLGHEDKVMCVNWSDYRY---IMSGGQDNSVRVF 169
+ K + + RY + +VR
Sbjct: 147 NGKEAKRTMSDAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSA 190
Score = 28.8 bits (63), Expect = 0.33
Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 15/72 (20%)
Query: 64 DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPID-PQLFVSASFDN 122
+ V+ + S++ S D P + + +
Sbjct: 250 QVWVYDLKSKQRVARWD-----LAQQKVEP--------LVSIQVSEDDKPLFYGLTATSD 296
Query: 123 SVKLWDLRSPKV 134
V + D R+ +
Sbjct: 297 LV-VMDARTGAL 307
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC
{Bacillus subtilis [TaxId: 1423]}
Length = 319
Score = 26.4 bits (57), Expect = 2.1
Identities = 12/127 (9%), Positives = 33/127 (25%), Gaps = 3/127 (2%)
Query: 31 SLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAI 90
++ F + PL+ + S + V + + + +++
Sbjct: 10 TMSEFLEEYWPVKPLVARGEVERFTSIPGFEKVRTLENVLAIYNNPVMVVGDAVIEESEG 69
Query: 91 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP-KVPLFDMLGHEDKVMCV 149
+ F +++ W L + ++ K L G K +
Sbjct: 70 ITDRFLVSPA--EALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLPAGTSSKAIVY 127
Query: 150 NWSDYRY 156
+
Sbjct: 128 AAKNGGG 134
>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga
maritima [TaxId: 2336]}
Length = 338
Score = 26.3 bits (58), Expect = 2.4
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 115 FVSASFDNSVKLWDLRSPKVPL 136
F+ + +N ++ D+R P + L
Sbjct: 124 FLKIAHENGTRIIDIRIPPLEL 145
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 25.3 bits (55), Expect = 6.2
Identities = 8/56 (14%), Positives = 13/56 (23%)
Query: 79 DAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV 134
E + G H + LF++ + V L K
Sbjct: 51 TNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKT 106
>d1azoa_ c.52.1.14 (A:) DNA mismatch repair protein MutH from
{Escherichia coli [TaxId: 562]}
Length = 226
Score = 24.4 bits (53), Expect = 8.7
Identities = 13/70 (18%), Positives = 26/70 (37%)
Query: 97 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRY 156
S W S + L++ + S+ L R L+ ED+ + +W +
Sbjct: 101 SGVTWETSHVRHKLKRVLWIPVEGEASIPLAQRRVGSPLLWSPNEEEDRQLREDWEELMD 160
Query: 157 IMSGGQDNSV 166
++ GQ +
Sbjct: 161 MIVLGQVERI 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.405
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 672,809
Number of extensions: 29155
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 118
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (24.0 bits)