RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2114
(147 letters)
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural
genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo
sapiens}
Length = 280
Score = 103 bits (258), Expect = 4e-28
Identities = 43/63 (68%), Positives = 49/63 (77%)
Query: 31 RKDKISVWEVDGKRFKPYCQNLCLLAKFFLDHKTLYDDVEPFLFYVMTICDSEGCHTVGY 90
RK IS +E+DG++ K Y QNLCLLAK FLDHKTLY D +PFLFYVMT D +G H VGY
Sbjct: 69 RKGTISFFEIDGRKNKSYSQNLCLLAKCFLDHKTLYYDTDPFLFYVMTEYDCKGFHIVGY 128
Query: 91 FSK 93
FSK
Sbjct: 129 FSK 131
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics,
structural genomics consortium, SGC; HET: COA; 1.45A
{Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A*
3tob_A*
Length = 278
Score = 103 bits (257), Expect = 6e-28
Identities = 45/63 (71%), Positives = 50/63 (79%)
Query: 31 RKDKISVWEVDGKRFKPYCQNLCLLAKFFLDHKTLYDDVEPFLFYVMTICDSEGCHTVGY 90
RK ISV EVDGK K YCQNLCLLAK FLDH+TLY DVEPF+FY++T D +G H VGY
Sbjct: 71 RKSNISVHEVDGKDHKIYCQNLCLLAKLFLDHRTLYFDVEPFVFYILTEVDRQGAHIVGY 130
Query: 91 FSK 93
FSK
Sbjct: 131 FSK 133
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G
consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Length = 284
Score = 100 bits (250), Expect = 7e-27
Identities = 47/63 (74%), Positives = 51/63 (80%)
Query: 31 RKDKISVWEVDGKRFKPYCQNLCLLAKFFLDHKTLYDDVEPFLFYVMTICDSEGCHTVGY 90
RK+ ISV+EVDG YCQNLCLLAK FLDHKTLY DVEPFLFYV+T D +GCH VGY
Sbjct: 76 RKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDVKGCHLVGY 135
Query: 91 FSK 93
FSK
Sbjct: 136 FSK 138
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 100 bits (249), Expect = 1e-26
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 31 RKDKISVWEVDGKRFKPYCQNLCLLAKFFLDHKTLYDDVEPFLFYVMTICDSEGCHTVGY 90
R D +S +E+DG++ + +C+NLCLL+K FLDHKTLY DV+PFLFY MT D G H VGY
Sbjct: 71 RDDYVSFFEIDGRKQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCMTRRDELGHHLVGY 130
Query: 91 FSK 93
FSK
Sbjct: 131 FSK 133
>2p0w_A Histone acetyltransferase type B catalytic subuni; HAT1, structural
genomics, structural genomics consortium, S transferase;
HET: ACO; 1.90A {Homo sapiens}
Length = 324
Score = 33.4 bits (76), Expect = 0.018
Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 25 FSILSSRKDKISVWEV-----DGKRFKPYCQNLCLLAKFFLDHKTLYDDVEP-----FLF 74
+S+LS + +++ + F+ Y + L +F++ + D + +F
Sbjct: 129 YSVLSPTGGENFTFQIYKADMTCRGFREYHERLQTFLMWFIETASFIDVDDERWHYFLVF 188
Query: 75 YVMTICDSEGCHTVGYFSKLHYAKF 99
+ TVGY + +Y +
Sbjct: 189 EKYNKDGATLFATVGYMTVYNYYVY 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.34
Identities = 34/172 (19%), Positives = 53/172 (30%), Gaps = 60/172 (34%)
Query: 2 LNLELCTKHAHPVVCLSSLTGLFFSI---LSSRKD-------KISVWEVDGKRF---KPY 48
LNL+ C P L L L + I +SR D +I + + +R KPY
Sbjct: 187 LNLKNCNS---PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 49 CQNLCLLAKFFLDHKTLYD--DVEPFLFY----VMT----ICDSEGCHTVGYFSKLHYAK 98
CLL L + + + F + T + D T + S H++
Sbjct: 244 EN--CLL---VLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 99 ----------FMTWFGLKT---PTSRFKIHRANHATAALRLVKNPRVLSIFA 137
+ + + P + PR LSI A
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTN--------------PRRLSIIA 334
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.8
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 105 LKTPTSRFKIHRANHATA-ALR 125
LK + K++ + A A A++
Sbjct: 22 LKKLQASLKLYADDSAPALAIK 43
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 26.0 bits (58), Expect = 5.5
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 9/27 (33%)
Query: 6 LCTKHAHPV---------VCLSSLTGL 23
L KHA V V +S++
Sbjct: 131 LVAKHAARVMIPAKKGSIVFTASISSF 157
>1tvl_A Protein YTNJ; beta-alpha barrel, structural genomics, PSI, protein
structu initiative, NEW YORK SGX research center for
structural GEN nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.1.16.4 PDB: 1yw1_A*
Length = 454
Score = 25.7 bits (57), Expect = 7.6
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 103 FGLKTPTSRFKIHRANHATAALR 125
GL P + +H ++H +
Sbjct: 428 LGLGIPQHQSVLHSSHHEGGSHH 450
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.140 0.451
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,156,683
Number of extensions: 112633
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 13
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.5 bits)