BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2115
         (77 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q27367|CRQ_DROME Protein croquemort OS=Drosophila melanogaster GN=crq PE=1 SV=2
          Length = 457

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 26/34 (76%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P  L  + FNWTNPEDIRN + KPNFVEMGPY F
Sbjct: 63 PIYLSFYMFNWTNPEDIRNPDIKPNFVEMGPYTF 96


>sp|Q14108|SCRB2_HUMAN Lysosome membrane protein 2 OS=Homo sapiens GN=SCARB2 PE=1 SV=2
          Length = 478

 Score = 30.0 bits (66), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 15 FNWTNPEDIRNNETKPNFVEMGPYRF 40
          FN TNPE+I   ET P   E+GPY +
Sbjct: 67 FNVTNPEEILRGET-PRVEEVGPYTY 91


>sp|B6JL62|SYE1_HELP2 Glutamate--tRNA ligase 1 OS=Helicobacter pylori (strain P12)
           GN=gltX1 PE=3 SV=1
          Length = 463

 Score = 30.0 bits (66), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 2   EINTNPKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
           ++N++P     HK NW N   ++N  T+     + P+ F
Sbjct: 291 DLNSSPSCFSWHKLNWLNAHYLKNQSTQELLKLLKPFSF 329


>sp|E0W3E3|SNMP1_PEDHC Sensory neuron membrane protein 1 OS=Pediculus humanus subsp.
          corporis GN=PHUM603690 PE=3 SV=1
          Length = 518

 Score = 30.0 bits (66), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P   + H FN TN  +++N    PN  E+GPY +
Sbjct: 55 PIDFKIHIFNITNHVEVQNEGKIPNLQEIGPYYY 88


>sp|Q10PV9|RH47B_ORYSJ DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa subsp.
           japonica GN=Os03g0219700 PE=2 SV=1
          Length = 573

 Score = 30.0 bits (66), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 7   PKKLRGHKFNWTNPEDIRNNETKPNFVEM-GPYRFHYGDKYKSQKTSGPQKWSGGPHVAR 65
           P+ +R H+  W   E +++         + G  +  YG K K+ +  GP+  S    +  
Sbjct: 36  PRAVRFHQTAWLGTETVQDKSASLTLASLEGQNKVEYGKKEKATRIGGPKPSSRASALKV 95

Query: 66  RPLVGN 71
           +P V +
Sbjct: 96  KPKVSS 101


>sp|E5EZW9|SNMP2_OSTNU Sensory neuron membrane protein 2 OS=Ostrinia nubilalis GN=Snmp2
          PE=2 SV=1
          Length = 522

 Score = 29.6 bits (65), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P     + FN TN ED+ NN  KP   ++GPY +
Sbjct: 58 PLTFNVYVFNVTNVEDV-NNGAKPRLQQIGPYAY 90


>sp|E5EZX0|SNMP2_OSTFU Sensory neuron membrane protein 2 OS=Ostrinia furnacalis GN=Snmp2
          PE=2 SV=1
          Length = 522

 Score = 29.6 bits (65), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P     + FN TN ED+ NN  KP   ++GPY +
Sbjct: 58 PLTFNVYVFNVTNVEDV-NNGAKPRLQQIGPYAY 90


>sp|Q09606|YRN3_CAEEL Uncharacterized protein R07B1.3 OS=Caenorhabditis elegans
          GN=R07B1.3 PE=1 SV=1
          Length = 536

 Score = 29.6 bits (65), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 10 LRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          ++ + FN TNP++++    KP  +E+G Y F
Sbjct: 67 MKFNLFNVTNPDEVKYLGAKPELIEVGGYAF 97


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.135    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,968,408
Number of Sequences: 539616
Number of extensions: 1424678
Number of successful extensions: 1590
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1585
Number of HSP's gapped (non-prelim): 11
length of query: 77
length of database: 191,569,459
effective HSP length: 48
effective length of query: 29
effective length of database: 165,667,891
effective search space: 4804368839
effective search space used: 4804368839
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)