Query psy2115
Match_columns 77
No_of_seqs 108 out of 410
Neff 4.6
Searched_HMMs 29240
Date Sat Aug 17 00:38:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xoc_A Oligopeptide-binding pr 38.4 17 0.00058 27.1 2.2 33 33-65 183-216 (520)
2 3t66_A Nickel ABC transporter 38.3 17 0.0006 27.0 2.3 34 33-66 157-191 (496)
3 3drf_A Oligopeptide-binding pr 37.5 18 0.00062 27.6 2.3 34 33-66 219-253 (590)
4 1dpe_A Dipeptide-binding prote 37.4 19 0.00064 26.6 2.3 33 34-66 181-214 (507)
5 2noo_A NIKA, nickel-binding pe 36.7 20 0.00068 26.5 2.4 33 34-66 161-194 (502)
6 3rqt_A Putative uncharacterize 36.1 19 0.00066 26.6 2.2 34 33-66 164-198 (486)
7 1uqw_A Putative binding protei 32.8 25 0.00084 26.2 2.3 32 34-65 181-214 (509)
8 3ry3_A Putative solute-binding 32.7 24 0.00083 26.5 2.3 33 33-65 177-210 (528)
9 3m8u_A Heme-binding protein A; 32.6 24 0.00083 26.3 2.3 34 33-66 182-216 (522)
10 2wol_A ORF15, clavulanic acid 31.9 20 0.00067 26.8 1.7 27 34-60 211-237 (562)
11 3zs6_A Periplasmic oligopeptid 29.6 23 0.0008 26.2 1.7 34 32-65 175-210 (506)
12 1jet_A OPPA, oligo-peptide bin 29.1 24 0.00081 26.2 1.7 34 33-66 186-221 (517)
13 3o9p_A Periplasmic murein pept 27.4 26 0.00089 26.1 1.7 35 32-66 188-224 (519)
14 3tpa_A Heme-binding protein A; 23.5 25 0.00084 26.3 0.9 33 33-65 187-220 (521)
15 2grv_A LPQW; substrate-binding 22.5 46 0.0016 25.8 2.3 34 33-66 215-250 (621)
16 2d5w_A Peptide ABC transporter 21.2 36 0.0012 25.8 1.4 33 33-65 208-246 (603)
No 1
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport, transport protein; 1.55A {Bacillus subtilis} SCOP: c.94.1.1
Probab=38.36 E-value=17 Score=27.07 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=24.1
Q ss_pred EEeCCeEEEEeeeeeceEEcCCcc-cCCCCeeec
Q psy2115 33 VEMGPYRFHYGDKYKSQKTSGPQK-WSGGPHVAR 65 (77)
Q Consensus 33 ~EvGPYvY~E~~~K~nvtf~~~~~-~~~~~~~~~ 65 (77)
.=-|||...++.....+++..|.. |.+.|++++
T Consensus 183 vGtGPy~l~~~~~~~~i~l~rn~~Yw~~~p~~d~ 216 (520)
T 1xoc_A 183 IGSGPFKFKEWKQGQYIKLEANDDYFEGRPYLDT 216 (520)
T ss_dssp CCSSSEEEEEEETTTEEEEEECTTCTTCCCSSSE
T ss_pred cccCCeEEEEecCCCEEEEEeCCcccCCCCCcCE
Confidence 346999999887666688877765 666677764
No 2
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=38.27 E-value=17 Score=26.96 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=25.1
Q ss_pred EEeCCeEEEEeeeeeceEEcCCcc-cCCCCeeecc
Q psy2115 33 VEMGPYRFHYGDKYKSQKTSGPQK-WSGGPHVARR 66 (77)
Q Consensus 33 ~EvGPYvY~E~~~K~nvtf~~~~~-~~~~~~~~~~ 66 (77)
.=-|||.+.+...-..+++..++. |.+.|++++.
T Consensus 157 vGtGPy~l~~~~~~~~i~l~rn~~Yw~~~p~~d~i 191 (496)
T 3t66_A 157 VGTGPFALESFTPGSKLELVRYDEYWDGASKLDSV 191 (496)
T ss_dssp CBSSSEEEEEEETTTEEEEEECTTCTTCCCSCSEE
T ss_pred cccCCeEEEEecCCCEEEEEECccccCCCCCCCEE
Confidence 346999999987666777777665 7777777743
No 3
>3drf_A Oligopeptide-binding protein OPPA; oligo-peptide binding, voluminous binding cavity, venus FLY- trap, peptide binding protein; 1.30A {Lactococcus lactis} PDB: 3drg_A 3drh_A 3dri_A 3drj_A 3drk_A 3fto_A 3rya_A 3ryb_A
Probab=37.52 E-value=18 Score=27.57 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=25.0
Q ss_pred EEeCCeEEEEeeeeeceEEcCCcc-cCCCCeeecc
Q psy2115 33 VEMGPYRFHYGDKYKSQKTSGPQK-WSGGPHVARR 66 (77)
Q Consensus 33 ~EvGPYvY~E~~~K~nvtf~~~~~-~~~~~~~~~~ 66 (77)
.=-|||.+.++..-..+++..|.. |.+.|++++.
T Consensus 219 vGtGPy~l~~~~~g~~i~L~rN~~Yw~~~p~~d~i 253 (590)
T 3drf_A 219 LVTGPFKPENVVAGESIKYVPNPYYWGEKPKLNSI 253 (590)
T ss_dssp CCCSSEEEEEEETTTEEEEEECTTCSSCCCSCSEE
T ss_pred cccCCeEEEEecCCCEEEEEECCcccCCCCcCCEE
Confidence 457999999987666777777765 6667777643
No 4
>1dpe_A Dipeptide-binding protein; peptide transport, periplasmic, chemotaxis binding proteins for active transport; 2.00A {Escherichia coli K12} SCOP: c.94.1.1 PDB: 1dpp_A
Probab=37.39 E-value=19 Score=26.63 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=24.3
Q ss_pred EeCCeEEEEeeeeeceEEcCCcc-cCCCCeeecc
Q psy2115 34 EMGPYRFHYGDKYKSQKTSGPQK-WSGGPHVARR 66 (77)
Q Consensus 34 EvGPYvY~E~~~K~nvtf~~~~~-~~~~~~~~~~ 66 (77)
=-|||...++.....+++..|.. |.+.|++++.
T Consensus 181 GtGPy~l~~~~~~~~i~l~rN~~Yw~~~p~~d~i 214 (507)
T 1dpe_A 181 GTGPFQLQQYQKDSRIRYKAFDGYWGTKPQIDTL 214 (507)
T ss_dssp CSSSEEEEEEETTTEEEEEECTTCSSCCCSCSEE
T ss_pred ccCCeEEEEecCCCEEEEEECcccccCCCCCCeE
Confidence 46999999887666788887766 6666777643
No 5
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A* 3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A* 3qim_A
Probab=36.73 E-value=20 Score=26.52 Aligned_cols=33 Identities=12% Similarity=0.316 Sum_probs=23.9
Q ss_pred EeCCeEEEEeeeeeceEEcCCcc-cCCCCeeecc
Q psy2115 34 EMGPYRFHYGDKYKSQKTSGPQK-WSGGPHVARR 66 (77)
Q Consensus 34 EvGPYvY~E~~~K~nvtf~~~~~-~~~~~~~~~~ 66 (77)
=-|||...++..-..+++..|+. |.+.|++++.
T Consensus 161 GtGPy~l~~~~~~~~i~l~rn~~Yw~~~p~~d~i 194 (502)
T 2noo_A 161 GTGPWILQESKLNQYDVFVRNENYWGEKPAIKKI 194 (502)
T ss_dssp CSSSEEEEEEETTTEEEEEECTTCSSCCCSCCEE
T ss_pred ecCCeEEEEecCCCEEEEeeCccccCCCCCCCEE
Confidence 36999999887666677877766 6666777643
No 6
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=36.11 E-value=19 Score=26.64 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=25.0
Q ss_pred EEeCCeEEEEeeeeeceEEcCCcc-cCCCCeeecc
Q psy2115 33 VEMGPYRFHYGDKYKSQKTSGPQK-WSGGPHVARR 66 (77)
Q Consensus 33 ~EvGPYvY~E~~~K~nvtf~~~~~-~~~~~~~~~~ 66 (77)
.=-|||...+...-..+++..++. |.+.|++++.
T Consensus 164 vGtGPy~l~~~~~g~~i~l~rn~~Yw~~~p~~d~i 198 (486)
T 3rqt_A 164 VGTGPYQIKDYKQSRKISLSNFKDYWQGKPKLDHI 198 (486)
T ss_dssp CCSSSEEEEEEETTTEEEEEECTTCTTSCCSCSEE
T ss_pred cccCCeEEEEecCCCeEEEEECccccCCCCCCCEE
Confidence 457999999887656677777765 7777777743
No 7
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=32.77 E-value=25 Score=26.17 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=23.9
Q ss_pred EeCCeEEEEeeeeeceEEcCCcc-cC-CCCeeec
Q psy2115 34 EMGPYRFHYGDKYKSQKTSGPQK-WS-GGPHVAR 65 (77)
Q Consensus 34 EvGPYvY~E~~~K~nvtf~~~~~-~~-~~~~~~~ 65 (77)
=-|||...++.....+++..|+. |. +.|++++
T Consensus 181 GtGPy~l~~~~~~~~i~l~rN~~Yw~~~~p~~d~ 214 (509)
T 1uqw_A 181 GTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDS 214 (509)
T ss_dssp CSSSEEEEEEETTTEEEEEECTTCSSTTCCCCSE
T ss_pred ccCCeEEEEecCCCEEEEEECCCccCCCCCccCE
Confidence 46999999887666788888776 55 4577774
No 8
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=32.69 E-value=24 Score=26.45 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=23.8
Q ss_pred EEeCCeEEEEeeeeeceEEcCCcc-cCCCCeeec
Q psy2115 33 VEMGPYRFHYGDKYKSQKTSGPQK-WSGGPHVAR 65 (77)
Q Consensus 33 ~EvGPYvY~E~~~K~nvtf~~~~~-~~~~~~~~~ 65 (77)
.=-|||.+.++..-..+++..|+. |.+.|++++
T Consensus 177 vGtGPy~l~~~~~~~~i~l~rN~~Yw~~~p~~d~ 210 (528)
T 3ry3_A 177 IGAGPYRLVSFQPGQQMIVEANPYYAGNKNDFDK 210 (528)
T ss_dssp CCSSSEEEEEEETTTEEEEEECTTCSSCCCSCSE
T ss_pred ccCCCcEEEEecCCCEEEEEECCCccCCCCCCCE
Confidence 346999999987666777777766 566666664
No 9
>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type transport system, PERI component, transport protein; HET: GDS; 1.85A {Haemophilus parasuis}
Probab=32.63 E-value=24 Score=26.30 Aligned_cols=34 Identities=18% Similarity=0.411 Sum_probs=25.2
Q ss_pred EEeCCeEEEEeeeeeceEEcCCcc-cCCCCeeecc
Q psy2115 33 VEMGPYRFHYGDKYKSQKTSGPQK-WSGGPHVARR 66 (77)
Q Consensus 33 ~EvGPYvY~E~~~K~nvtf~~~~~-~~~~~~~~~~ 66 (77)
.=-|||.+.++..-..+++..|.. |.+.|.+++.
T Consensus 182 vGtGPy~l~~~~~~~~i~l~rN~~Yw~~~p~~d~i 216 (522)
T 3m8u_A 182 IGTGPFLFAGYQVDQKSRYLAHKEYWKGKADIDRL 216 (522)
T ss_dssp CCSSSEEEEEEETTTEEEEEECTTCTTCCCSCSEE
T ss_pred cccCCeEEEEecCCCEEEEEeCccccCCCCCCCEE
Confidence 357999999987666777777765 7777777643
No 10
>2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2; solute-binding protein; 1.45A {Streptomyces clavuligerus} PDB: 2wok_A 2wop_A*
Probab=31.92 E-value=20 Score=26.83 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=20.6
Q ss_pred EeCCeEEEEeeeeeceEEcCCcccCCC
Q psy2115 34 EMGPYRFHYGDKYKSQKTSGPQKWSGG 60 (77)
Q Consensus 34 EvGPYvY~E~~~K~nvtf~~~~~~~~~ 60 (77)
=-|||.+.++.....+++..|..|.++
T Consensus 211 GtGPy~l~~~~~~~~i~l~rN~~y~~~ 237 (562)
T 2wol_A 211 SSGPYRVARHEPDTLLHLERNPHWDRA 237 (562)
T ss_dssp CCSSEEEEEEETTTEEEEEECTTCCGG
T ss_pred CCCCeEEEEecCCCeEEEEeCCCCCcc
Confidence 369999998876667888877777653
No 11
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein, ABC transport system; HET: GOL; 2.10A {Burkholderia pseudomallei}
Probab=29.57 E-value=23 Score=26.22 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=24.8
Q ss_pred eEEeCCeEEEEeeeeeceEEcCCcc-cCC-CCeeec
Q psy2115 32 FVEMGPYRFHYGDKYKSQKTSGPQK-WSG-GPHVAR 65 (77)
Q Consensus 32 v~EvGPYvY~E~~~K~nvtf~~~~~-~~~-~~~~~~ 65 (77)
..=-|||.+.++..-..+++..|.. |.+ .|++++
T Consensus 175 ~vGtGPy~l~~~~~g~~i~l~rn~~Yw~~~~p~~d~ 210 (506)
T 3zs6_A 175 IVSNGPYTLVDWQPNNRIVMAKSDKYWNARNVVIRK 210 (506)
T ss_dssp CCCCSSEEEEEEETTTEEEEEECSSSTTGGGCCCCE
T ss_pred eeecCCEEEEEecCCCeEEEEeCCCccCCCCCcCCE
Confidence 3457999999987666788887777 654 377764
No 12
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide transport/peptide), peptide transport; 1.20A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A 1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A 1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A 1b7h_A ...
Probab=29.13 E-value=24 Score=26.19 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=24.5
Q ss_pred EEeCCeEEEEeeeeeceEEcCCcc-cCCC-Ceeecc
Q psy2115 33 VEMGPYRFHYGDKYKSQKTSGPQK-WSGG-PHVARR 66 (77)
Q Consensus 33 ~EvGPYvY~E~~~K~nvtf~~~~~-~~~~-~~~~~~ 66 (77)
.=-|||...++..-..+++..|.. |.++ |++++.
T Consensus 186 vGtGPy~l~~~~~~~~i~l~rn~~Yw~~~~p~~d~i 221 (517)
T 1jet_A 186 VTNGAYKLKNWVVNERIVLERNPQYWDNAKTVINQV 221 (517)
T ss_dssp CCCSSEEEEEEETTTEEEEEECTTSTTGGGCCCCEE
T ss_pred eecCCEEEEEecCCCEEEEEECccccCCCCCCCCeE
Confidence 346999999887666788887766 5544 777743
No 13
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding proteins, murein tripeptide, periplasmi protein; HET: MHI; 2.07A {Escherichia coli} SCOP: c.94.1.0
Probab=27.45 E-value=26 Score=26.06 Aligned_cols=35 Identities=9% Similarity=0.166 Sum_probs=25.2
Q ss_pred eEEeCCeEEEEeeeeeceEEcCCcc-cCC-CCeeecc
Q psy2115 32 FVEMGPYRFHYGDKYKSQKTSGPQK-WSG-GPHVARR 66 (77)
Q Consensus 32 v~EvGPYvY~E~~~K~nvtf~~~~~-~~~-~~~~~~~ 66 (77)
..=-|||.+.++..-..+++..|+. |.+ .|++++.
T Consensus 188 ~vGtGPy~l~~~~~~~~i~l~rn~~Yw~~~~p~~d~i 224 (519)
T 3o9p_A 188 LIGNGAYVLKERVVNEKLVVVPNTHYWDNAKTVLQKV 224 (519)
T ss_dssp CCCSSSEEEEEEETTTEEEEEECTTSTTGGGCCCSEE
T ss_pred ceeeCCeEEEEEccCCEEEEeeCCcccCCCCCcCCeE
Confidence 3457999999987666788877777 654 3777643
No 14
>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A {Haemophilus parasuis 29755} SCOP: c.94.1.0
Probab=23.46 E-value=25 Score=26.26 Aligned_cols=33 Identities=18% Similarity=0.535 Sum_probs=24.4
Q ss_pred EEeCCeEEEEeeeeeceEEcCCcc-cCCCCeeec
Q psy2115 33 VEMGPYRFHYGDKYKSQKTSGPQK-WSGGPHVAR 65 (77)
Q Consensus 33 ~EvGPYvY~E~~~K~nvtf~~~~~-~~~~~~~~~ 65 (77)
.=-|||.+.++..-..+++..|.. |.+.|.+++
T Consensus 187 vGtGPy~l~~~~~~~~i~l~rn~~Yw~~~p~~d~ 220 (521)
T 3tpa_A 187 IGTGPFIFQTNQTDHAVRYTANVDYWKGKADIER 220 (521)
T ss_dssp CCSSSEEECSSCCTTEEEEEECTTCTTCCCSCSE
T ss_pred cccCCeEEEEecCCCEEEEEeCccccCCCCCCCE
Confidence 347999999887666777777765 777777764
No 15
>2grv_A LPQW; substrate-binding protein scaffold, biosynthetic protein; 2.40A {Mycobacterium smegmatis str}
Probab=22.49 E-value=46 Score=25.76 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=23.8
Q ss_pred EEeCCeEEEEeeee-eceEEcCCcc-cCCCCeeecc
Q psy2115 33 VEMGPYRFHYGDKY-KSQKTSGPQK-WSGGPHVARR 66 (77)
Q Consensus 33 ~EvGPYvY~E~~~K-~nvtf~~~~~-~~~~~~~~~~ 66 (77)
.=-|||...++..- ..+++..|+. |.+.|++++.
T Consensus 215 vGtGPy~l~~~~~~~~~i~L~rN~~Yw~~~p~~d~I 250 (621)
T 2grv_A 215 VTGGQFRVETIDPQRDEILLARNDRFWSVPAKPDLV 250 (621)
T ss_dssp SCCSSEEEEEEETTTTEEEEEECTTCSSSCCSCSEE
T ss_pred ccCCCeEEEEEecCCcEEEEEeCCcccCCCCCCCEE
Confidence 34699999987653 4677777766 5655677743
No 16
>2d5w_A Peptide ABC transporter, peptide-binding protein; protein-peptide complex, peptide binding protein; 1.30A {Thermus thermophilus}
Probab=21.24 E-value=36 Score=25.78 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=23.1
Q ss_pred EEeCCeEEEEeeeeeceEEcCCccc------CCCCeeec
Q psy2115 33 VEMGPYRFHYGDKYKSQKTSGPQKW------SGGPHVAR 65 (77)
Q Consensus 33 ~EvGPYvY~E~~~K~nvtf~~~~~~------~~~~~~~~ 65 (77)
.=-|||.+.++.....+++..|..| .+.|++++
T Consensus 208 vGtGPy~l~~~~~~~~i~L~rN~~Y~~~~~w~~~p~~d~ 246 (603)
T 2d5w_A 208 VYSGPFKLKRWVPGNSIEMERNPNFPIKPEGGESKYVQK 246 (603)
T ss_dssp CCCSSEEEEEEETTTEEEEEECTTCCCCCTTCGGGSCSE
T ss_pred cccCCeEEEeeccCceEEEEeCCCcccccCCCCCCCCCE
Confidence 3469999998876666888877664 44456653
Done!