RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2116
(102 letters)
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G
consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Length = 284
Score = 98.5 bits (245), Expect = 1e-26
Identities = 42/69 (60%), Positives = 51/69 (73%)
Query: 34 PNTRGTKYLQMGKYEMEVWYQSPYPDDYARLPKLYLCEFCLKYMKTKTILFRHANKCVWK 93
P R ++ GKYE+ WY SPYP +Y+RLPKLYLCEFCLKYMK++TIL +H KC W
Sbjct: 8 PQVRCPSVIEFGKYEIHTWYSSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHMKKCGWF 67
Query: 94 HPPGEEVYR 102
HPP E+YR
Sbjct: 68 HPPANEIYR 76
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics,
structural genomics consortium, SGC; HET: COA; 1.45A
{Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A*
3tob_A*
Length = 278
Score = 96.6 bits (240), Expect = 5e-26
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 35 NTRGTKYLQMGKYEMEVWYQSPYPDDYARLPKLYLCEFCLKYMKTKTILFRHANKCVWKH 94
+ + +G YE++ WY SP+P+DY + PKL+LCE+CLKYMK + H +C W+
Sbjct: 4 KVKYVDKIHIGNYEIDAWYFSPFPEDYGKQPKLWLCEYCLKYMKYEKSYRFHLGQCQWRQ 63
Query: 95 PPGEEVYR 102
PPG+E+YR
Sbjct: 64 PPGKEIYR 71
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural
genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo
sapiens}
Length = 280
Score = 96.2 bits (239), Expect = 6e-26
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 37 RGTKYLQMGKYEMEVWYQSPYPDDYARLPKLYLCEFCLKYMKTKTILFRHANKCVWKHPP 96
+ + +++G++ ++ WY SPYP + LP LYLCEFCLKY ++ L RH KC +HPP
Sbjct: 4 KNIECIELGRHRLKPWYFSPYPQELTTLPVLYLCEFCLKYGRSLKCLQRHLTKCDLRHPP 63
Query: 97 GEEVYR 102
G E+YR
Sbjct: 64 GNEIYR 69
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 93.5 bits (232), Expect = 7e-25
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 36 TRGTKYLQMGKYEMEVWYQSPYPDDYARLPKLYLCEFCLKYMKTKTILFRHANKCVWKHP 95
R + MGKYE+E WY SPYP + +Y+ +F L+Y +K R+ KC +HP
Sbjct: 5 VRNLNRIIMGKYEIEPWYFSPYPIELTDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHP 64
Query: 96 PGEEVYR 102
PG E+YR
Sbjct: 65 PGNEIYR 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.042
Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 36/106 (33%)
Query: 9 RPWSL------------INWFYFALVLFSQEAELKTLPN-TRG--------------TKY 41
RP +L F+ A L QE K LP T G K+
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 42 LQMGKYEMEVWYQSPYPDDYARLPKLYLCEFCLKYMKTKTILFRHA 87
L +E S + ++ L L EF Y++ I HA
Sbjct: 65 LGYVSSLVE---PSK-VGQFDQVLNLCLTEFENCYLEGNDI---HA 103
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor,
ER-alpha, antagonist hormone-growth factor receptor
complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1
PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A*
3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A*
1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A*
...
Length = 248
Score = 30.5 bits (69), Expect = 0.058
Identities = 9/81 (11%), Positives = 26/81 (32%), Gaps = 10/81 (12%)
Query: 20 ALVLFSQEAELKTLPNTRGTK------YLQMGKYEMEVWY----QSPYPDDYARLPKLYL 69
+++L + + + + + + + RL +L L
Sbjct: 144 SIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLL 203
Query: 70 CEFCLKYMKTKTILFRHANKC 90
+++M K + ++ KC
Sbjct: 204 ILSHIRHMSNKGMEHLYSMKC 224
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich,
structural proteomics in europe, spine, structural
genomics, gene regulation; HET: EPH; 1.65A {Heliothis
virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A*
3ixp_A*
Length = 264
Score = 30.2 bits (68), Expect = 0.089
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLCEFCLKYMK 78
A++L + ++K L N + + L+ + Y + + R L L L+ +
Sbjct: 169 AIILLN--PDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSIS 226
Query: 79 TKTI 82
K+
Sbjct: 227 LKSF 230
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand
binding domain, orphan receptor, three-layered helical
sandwich, DNA-binding; 1.48A {Homo sapiens}
Length = 244
Score = 28.6 bits (64), Expect = 0.29
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLCEFCLKYMK 78
A+VLF+ +A L + + LQ Y +S YP+ R KL L L+ +
Sbjct: 147 AIVLFTSDA--CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVS 204
Query: 79 TKTI 82
+ I
Sbjct: 205 SSVI 208
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A
{Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A*
1lv2_A*
Length = 237
Score = 28.1 bits (63), Expect = 0.38
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLCEFCLKYMK 78
A++ F +A K L + K L+ Y D R +L L L+ +
Sbjct: 150 AIIFFDPDA--KGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSIT 207
Query: 79 TKTI 82
+ I
Sbjct: 208 WQMI 211
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN
factor, transcription-receptor-agonist comple; HET: 470;
1.75A {Homo sapiens} PDB: 1yok_A* 1yuc_A* 4dor_A*
1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Length = 257
Score = 27.8 bits (62), Expect = 0.55
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLCEFCLKYMK 78
LVLFS ++K L N + + +Q + Y YP + +L L ++ +
Sbjct: 169 FLVLFS--LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAIS 226
Query: 79 TKTI 82
+
Sbjct: 227 MQAE 230
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand
binding pocket, hormone/growth factor complex; HET: P1A;
2.75A {Tribolium castaneum}
Length = 235
Score = 27.7 bits (62), Expect = 0.57
Identities = 12/64 (18%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLCEFCLKYMK 78
A++L++ +++ + + + + L+ Y + Y ++ +P++ R KL L L+ +
Sbjct: 146 AIILYN--PDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIG 203
Query: 79 TKTI 82
K +
Sbjct: 204 LKCL 207
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 27.7 bits (61), Expect = 0.62
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLCEFCLKYMK 78
LVLFS ++K L N + + +Q + Y YP + +L L ++ +
Sbjct: 264 FLVLFS--LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAIS 321
Query: 79 TKTI 82
+
Sbjct: 322 MQAE 325
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, antagonist,
spironolactone; HET: SNL; 2.11A {Homo sapiens}
Length = 294
Score = 27.6 bits (61), Expect = 0.65
Identities = 7/81 (8%), Positives = 20/81 (24%), Gaps = 5/81 (6%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY----QSPYPDDYARLPKLYLCEFCLK 75
L+L S L + + ++ + + + R +L +
Sbjct: 184 VLLLLSTIP-KDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMH 242
Query: 76 YMKTKTILFRHANKCVWKHPP 96
+ + + F
Sbjct: 243 DLVSDLLEFCFYTFRESHALK 263
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional
corepressor, regulatory complex, DNA-binding,
lipid-binding, metal-binding; 3.00A {Mus musculus}
Length = 268
Score = 27.5 bits (60), Expect = 0.78
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLCEFCLKYMK 78
VLF+ + L + + LQ ++ + + + R +L F L+++
Sbjct: 181 GTVLFNPDL--PGLQCVKYIEGLQWRTQQILTEHIRMMQREYQIRSAELNSALFLLRFIN 238
Query: 79 TKTI---LFRH 86
+ + FR
Sbjct: 239 SDVVTELFFRP 249
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand,
phosphatidyl glycerol, CO-repressor peptide,
transcription; HET: DR9; 1.20A {Mus musculus} PDB:
3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Length = 246
Score = 27.1 bits (60), Expect = 0.91
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLC 70
L+LFS ++K L N K Q + Y S YP + +L L
Sbjct: 158 FLILFS--LDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLS 207
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein,
phosphorylation, PAIR-RULE protein; 2.8A {Drosophila
melanogaster} PDB: 2xhs_A
Length = 243
Score = 27.0 bits (60), Expect = 1.1
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLCEFCLKYMK 78
L+L + + + N + + Y + YP + L + M
Sbjct: 156 FLILLNPSV--RGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNILPEIHAMA 213
Query: 79 TKTI 82
+
Sbjct: 214 VRGE 217
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor,
transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A*
1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A*
2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Length = 244
Score = 27.0 bits (60), Expect = 1.1
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLC 70
A+ L + ++ + + + LQ +E Y + +D R K+ +
Sbjct: 156 AIALANSDS--MHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 205
>2qdr_A Uncharacterized protein; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}
Length = 303
Score = 27.1 bits (59), Expect = 1.2
Identities = 15/89 (16%), Positives = 27/89 (30%)
Query: 13 LINWFYFALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWYQSPYPDDYARLPKLYLCEF 72
I W V + + P+ R + ++ ++ W ++ K +
Sbjct: 155 EILWMENGSVPLEYKYAQEDHPDARLSDFIPALDSKLLPWGKADTVQFVQANKKWLRKDI 214
Query: 73 CLKYMKTKTILFRHANKCVWKHPPGEEVY 101
+ IL NK P EE Y
Sbjct: 215 NGGGVWLLAILPHFDNKYQMIQPYNEEGY 243
>1yje_A Orphan nuclear receptor NR4A1; NGFI-B, NUR77, ligand-binding
domain, novel coregulator interface, cell-specific;
2.40A {Rattus norvegicus} PDB: 2qw4_A
Length = 264
Score = 26.6 bits (59), Expect = 1.4
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY---QSPYPDDYARLPKLYL 69
ALVL + L+ + R + LQ + + P + L +L
Sbjct: 174 ALVLITDRHGLQ---DPRRVEELQNRIASCLKEHMAAVAGDPQPASCLSRLLG 223
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein
mobIle metagenome structural genomics PSI-2 protein
structure initiative midwest center for structural
genomics; HET: MSE; 2.18A {Unidentified}
Length = 119
Score = 26.0 bits (56), Expect = 2.0
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 5 SRKPRPWSLINWFYFAL-VLFSQEAELKTLPNTR 37
S PR WS W Q +L PNTR
Sbjct: 68 SPVPREWSYAQWLQQIFAAASEQGVKLVLGPNTR 101
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 298
Score = 26.0 bits (57), Expect = 2.2
Identities = 5/61 (8%), Positives = 16/61 (26%), Gaps = 10/61 (16%)
Query: 20 ALVLFSQEAELKTLPNTRGTK------YLQMGKYEMEVWY----QSPYPDDYARLPKLYL 69
+++L + + + + + + + RL +L L
Sbjct: 153 SIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLL 212
Query: 70 C 70
Sbjct: 213 I 213
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine, structural
genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB:
1z5x_U* 2q60_A
Length = 282
Score = 25.9 bits (57), Expect = 2.2
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYL 69
A+VLF+ + K L N + L+ Y Y + YP+ R KL L
Sbjct: 192 AIVLFN--PDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLL 240
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone
receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1
PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A*
2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A*
3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A*
...
Length = 240
Score = 25.9 bits (57), Expect = 2.4
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLC 70
A+VLF+ + K L N + L+ Y Y + YP+ R KL L
Sbjct: 150 AIVLFN--PDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLR 199
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 24.0 bits (52), Expect = 2.6
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 66 KLYLCEFCLKYMKTKTILFRHANKC 90
K Y C C + + +L RHA K
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKI 25
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone
receptor-activator; HET: PTR EST; 1.50A {Homo sapiens}
PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A*
2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A*
1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A*
...
Length = 240
Score = 25.5 bits (56), Expect = 3.0
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 20 ALVLFSQEA-----ELKTLPNTRGTKYLQMGKYEMEVWY----QSPYPDDYARLPKLYLC 70
A++L + + ++R +L + VW RL L +
Sbjct: 142 AMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLML 201
Query: 71 EFCLKYMKTKTILFRHANKC 90
+++ K + KC
Sbjct: 202 LSHVRHASNKGMEHLLNMKC 221
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear
receptor, mouse GR, hormone receptor; HET: DEX; 1.50A
{Mus musculus} PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A*
3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A*
3gn8_A* 4e2j_A*
Length = 261
Score = 24.9 bits (54), Expect = 6.2
Identities = 7/75 (9%), Positives = 20/75 (26%), Gaps = 5/75 (6%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY----QSPYPDDYARLPKLYLCEFCLK 75
L+L S + L + ++M + ++ R +L +
Sbjct: 152 TLLLLSSVP-KEGLKSQELFDEIRMTYIKELGKAIAKRGGNSSQNWQRFYQLTKLLDSMH 210
Query: 76 YMKTKTILFRHANKC 90
+ + +
Sbjct: 211 DVVENLLSYCFQTFL 225
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor,
transcription factor, agonist; HET: 196; 2.03A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Length = 268
Score = 24.9 bits (54), Expect = 6.4
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 20 ALVLFSQEA-----ELKTLPNTRGTKYLQMGKYEMEVWY----QSPYPDDYARLPKLYLC 70
A++L + + ++R +L + VW RL L +
Sbjct: 140 AMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLML 199
Query: 71 EFCLKYMKTKTILFRHANKC 90
+++ K + KC
Sbjct: 200 LSHVRHASNKGMEHLLNMKC 219
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 24.3 bits (52), Expect = 7.0
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 63 RLPKLYLCEFCLKYMKTKTILFRHANKCVWKHP 95
L Y+C C K L H K HP
Sbjct: 46 VLNSSYVCVECNFLTKRYDALSEHNLKY---HP 75
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 24.1 bits (51), Expect = 7.0
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 66 KLYLCEFCLKYMKTKTILFRH 86
K C C++ K+ ++RH
Sbjct: 68 KKLTCLECMRTFKSSFSIWRH 88
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein,
cysteine-rich secretory PROT domain, immune system;
2.20A {Necator americanus}
Length = 424
Score = 24.7 bits (53), Expect = 7.6
Identities = 2/16 (12%), Positives = 3/16 (18%)
Query: 85 RHANKCVWKHPPGEEV 100
C + V
Sbjct: 84 DAIQSCPSGFAGIQGV 99
>1vr5_A Oligopeptide ABC transporter, periplasmic oligope binding protein;
TM1223, periplasmic oligopepti binding, structural
genomics; HET: EPE; 1.73A {Thermotoga maritima} SCOP:
c.94.1.1
Length = 547
Score = 24.3 bits (53), Expect = 8.9
Identities = 5/47 (10%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 27 EAELKTLPNTRGTKYLQMGKYEMEV--WYQSPYPDDYARLPKLYLCE 71
E K ++ L GK+++ + + ++ ++ +
Sbjct: 397 NVEPKYPDYSKYADDLYGGKFDLILNNFTTGVSATIWSYFNGVFYPD 443
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.481
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,604,801
Number of extensions: 75669
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 48
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)