RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2116
(102 letters)
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 103 bits (258), Expect = 4e-29
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 36 TRGTKYLQMGKYEMEVWYQSPYPDDYARLPKLYLCEFCLKYMKTKTILFRHANKCVWKHP 95
R + MGKYE+E WY SPYP + +Y+ +F L+Y +K R+ KC +HP
Sbjct: 3 VRNLNRIIMGKYEIEPWYFSPYPIELTDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHP 62
Query: 96 PGEEVYR 102
PG E+YR
Sbjct: 63 PGNEIYR 69
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 101 bits (252), Expect = 3e-28
Identities = 41/66 (62%), Positives = 50/66 (75%)
Query: 37 RGTKYLQMGKYEMEVWYQSPYPDDYARLPKLYLCEFCLKYMKTKTILFRHANKCVWKHPP 96
R ++ GKYE+ WY SPYP +Y+RLPKLYLCEFCLKYMK++TIL +H KC W HPP
Sbjct: 1 RCPSVIEFGKYEIHTWYSSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHMKKCGWFHPP 60
Query: 97 GEEVYR 102
E+YR
Sbjct: 61 ANEIYR 66
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 99.9 bits (249), Expect = 9e-28
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 40 KYLQMGKYEMEVWYQSPYPDDYARLPKLYLCEFCLKYMKTKTILFRHANKCVWKHPPGEE 99
+ +G YE++ WY SP+P+DY + PKL+LCE+CLKYMK + H +C W+ PPG+E
Sbjct: 4 DKIHIGNYEIDAWYFSPFPEDYGKQPKLWLCEYCLKYMKYEKSYRFHLGQCQWRQPPGKE 63
Query: 100 VYR 102
+YR
Sbjct: 64 IYR 66
>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz
{Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 57.0 bits (138), Expect = 2e-13
Identities = 23/31 (74%), Positives = 27/31 (87%)
Query: 62 ARLPKLYLCEFCLKYMKTKTILFRHANKCVW 92
+RLPKLYLCEFCLKYMK++TIL +H KC W
Sbjct: 2 SRLPKLYLCEFCLKYMKSRTILQQHMKKCGW 32
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 27.3 bits (60), Expect = 0.27
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 3/77 (3%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLCEFCLKYMK 78
A+ L + L LQ E Y + P P++ + L+ +
Sbjct: 152 AICLICGDR--MDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGIS 209
Query: 79 TKTILFRHANKCVWKHP 95
TK K P
Sbjct: 210 TKGAERAITLKMEIPGP 226
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 25.1 bits (54), Expect = 0.47
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 64 LPKLYLCEFCLKYMKTKTILFRHANKC 90
+P ++C C K + + RHA+ C
Sbjct: 1 VPAAFVCSKCGKTFTRRNTMARHADNC 27
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
Thermoproteus tenax [TaxId: 2271]}
Length = 499
Score = 24.9 bits (53), Expect = 2.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 76 YMKTKTILFRHANKCVWKH 94
KTI+F + K VWK+
Sbjct: 480 VTAYKTIVFNYKGKGVWKY 498
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 22.5 bits (48), Expect = 3.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 68 YLCEFCLKYMKTKTILFRHANK 89
Y C C + + +L RHA K
Sbjct: 2 YPCGLCNRAFTRRDLLIRHAQK 23
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 22.7 bits (49), Expect = 5.7
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 68 YLCEFCLKYMKTKTILFRH 86
+ C C +Y T L H
Sbjct: 16 HRCLACARYFIDSTNLKTH 34
>d2i0ka1 d.58.32.3 (A:274-613) Cholesterol oxidase {Brevibacterium
sterolicum [TaxId: 1702]}
Length = 340
Score = 23.4 bits (50), Expect = 6.4
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 18/62 (29%)
Query: 7 KPRP----WSLINWFYFALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWYQSPYPDDYA 62
+PRP W + W + +P GT + EME W +S Y +D A
Sbjct: 228 RPRPDHPDWDVAIWL-----------NVLGVP---GTPGMFEFYREMEQWMRSHYNNDDA 273
Query: 63 RL 64
Sbjct: 274 TF 275
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 23.4 bits (50), Expect = 7.3
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 17 FYFALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLCEFCLK 75
+ A ++ + L N + +Q G + + QS +PDD PKL L+
Sbjct: 176 LFVAAIICCGDR--PGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLR 233
Query: 76 YMKTKTI 82
+ T+
Sbjct: 234 QLVTEHA 240
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 21.6 bits (46), Expect = 8.5
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 66 KLYLCEFCLKYMKTKTILFRH 86
K Y C C K + K +L H
Sbjct: 7 KPYACSHCDKTFRQKQLLDMH 27
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 23.2 bits (49), Expect = 9.0
Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 20 ALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWY-QSPYPDDYARLPKLYLCEFCLKYMK 78
A++L++ + + + + + + Y + + +P D R +L L L+ +
Sbjct: 175 AIILYNPDI--RGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSIS 232
Query: 79 TKTI 82
K
Sbjct: 233 LKCQ 236
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 23.1 bits (49), Expect = 9.3
Identities = 10/53 (18%), Positives = 14/53 (26%), Gaps = 2/53 (3%)
Query: 18 YFALVLFSQEAELKTLPNTRGTKYLQMGKYEMEVWYQSPYPDDYARLPKLYLC 70
+ A VL S + L + LQ + L KL
Sbjct: 163 FSAFVLMSADR--SWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICK 213
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.481
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 420,438
Number of extensions: 16853
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 26
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)