Query psy2117
Match_columns 81
No_of_seqs 105 out of 468
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 16:31:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01130 CD36: CD36 family; I 100.0 1.1E-29 2.4E-34 190.4 7.6 80 2-81 3-84 (467)
2 KOG3776|consensus 99.9 1.2E-27 2.7E-32 181.9 6.6 80 2-81 15-95 (507)
3 PF09838 DUF2065: Uncharacteri 56.6 16 0.00036 20.3 2.7 33 2-34 4-36 (57)
4 PF06053 DUF929: Domain of unk 55.4 18 0.00039 25.9 3.4 23 53-77 45-67 (249)
5 PF11381 DUF3185: Protein of u 53.0 11 0.00024 21.4 1.6 35 2-36 2-37 (59)
6 PF05745 CRPA: Chlamydia 15 kD 51.3 10 0.00023 25.0 1.5 15 1-15 69-84 (150)
7 PF02038 ATP1G1_PLM_MAT8: ATP1 45.3 14 0.0003 20.4 1.1 12 1-12 19-30 (50)
8 COG2832 Uncharacterized protei 42.1 14 0.00031 23.8 1.0 40 2-42 8-50 (119)
9 PF11295 DUF3096: Protein of u 41.4 41 0.00088 17.6 2.5 20 7-26 4-23 (39)
10 PRK12585 putative monovalent c 39.5 23 0.0005 24.7 1.8 22 3-24 15-37 (197)
11 PF02056 Glyco_hydro_4: Family 39.2 21 0.00044 24.4 1.5 13 52-64 138-150 (183)
12 PRK00523 hypothetical protein; 38.4 49 0.0011 19.5 2.9 30 4-33 11-42 (72)
13 KOG0938|consensus 37.4 11 0.00023 28.9 -0.1 34 22-55 376-409 (446)
14 PRK06580 putative monovalent c 37.3 57 0.0012 20.3 3.2 38 25-67 58-95 (103)
15 PRK10527 hypothetical protein; 35.9 16 0.00035 23.5 0.6 41 2-43 8-51 (125)
16 PF09656 PGPGW: Putative trans 34.6 33 0.00071 19.0 1.6 13 2-14 6-19 (53)
17 PF03393 Pneumo_matrix: Pneumo 33.7 33 0.00071 24.5 1.9 28 52-79 201-230 (252)
18 PF10177 DUF2371: Uncharacteri 32.9 24 0.00053 23.3 1.1 18 2-19 44-64 (141)
19 PRK12675 putative monovalent c 32.3 38 0.00081 21.2 1.8 22 3-24 9-31 (104)
20 TIGR01300 CPA3_mnhG_phaG monov 31.9 43 0.00093 20.5 2.0 23 2-24 4-27 (97)
21 TIGR00869 sec62 protein transl 31.8 41 0.00088 24.0 2.1 22 3-24 124-146 (232)
22 PF03729 DUF308: Short repeat 31.6 79 0.0017 16.9 3.0 17 3-19 2-18 (72)
23 PRK12586 putative monovalent c 30.2 38 0.00082 22.5 1.6 8 16-23 32-39 (145)
24 PRK10574 putative major pilin 30.1 68 0.0015 21.0 2.8 20 5-24 14-34 (146)
25 PF15345 TMEM51: Transmembrane 29.9 29 0.00062 24.8 1.1 14 2-15 11-25 (233)
26 PF03839 Sec62: Translocation 29.6 37 0.0008 24.0 1.6 11 50-60 194-204 (224)
27 PF03334 PhaG_MnhG_YufB: Na+/H 29.6 60 0.0013 19.0 2.3 24 1-24 2-26 (81)
28 PF14927 Neurensin: Neurensin 29.1 35 0.00077 22.5 1.3 14 1-14 48-62 (140)
29 PF06799 DUF1230: Protein of u 29.0 88 0.0019 20.8 3.2 30 16-45 85-116 (144)
30 PF02799 NMT_C: Myristoyl-CoA: 28.8 37 0.0008 23.5 1.5 17 45-61 162-178 (190)
31 PRK12592 putative monovalent c 28.5 42 0.00091 21.7 1.6 22 3-24 17-39 (126)
32 PRK01844 hypothetical protein; 28.0 94 0.002 18.3 2.9 30 4-33 10-41 (72)
33 PRK12671 putative monovalent c 27.2 51 0.0011 21.2 1.8 22 3-24 21-43 (120)
34 smart00879 Brix Brix domain. T 27.0 94 0.002 19.9 3.1 25 47-77 152-176 (180)
35 PF01102 Glycophorin_A: Glycop 27.0 59 0.0013 20.9 2.1 7 21-27 88-94 (122)
36 PRK12670 putative monovalent c 26.7 58 0.0013 20.0 2.0 22 3-24 12-34 (99)
37 PRK12672 putative monovalent c 26.6 54 0.0012 20.8 1.9 22 3-24 13-35 (118)
38 PF04156 IncA: IncA protein; 25.9 54 0.0012 21.6 1.8 11 2-12 13-23 (191)
39 COG5154 BRX1 RNA-binding prote 25.9 2.1E+02 0.0046 20.6 4.8 58 20-77 151-211 (283)
40 PF05552 TM_helix: Conserved T 25.9 1.1E+02 0.0025 16.1 3.2 24 4-27 21-45 (53)
41 COG4968 PilE Tfp pilus assembl 25.6 1E+02 0.0022 20.4 3.0 22 5-26 15-37 (139)
42 PRK12674 putative monovalent c 25.3 62 0.0013 19.7 1.9 22 3-24 13-35 (99)
43 cd06919 Asp_decarbox Aspartate 25.3 38 0.00081 21.6 0.9 21 44-64 35-55 (111)
44 PRK15076 alpha-galactosidase; 25.0 48 0.001 25.3 1.6 16 50-65 139-154 (431)
45 PRK12587 putative monovalent c 25.0 59 0.0013 20.7 1.8 21 4-24 17-38 (118)
46 TIGR01710 typeII_sec_gspG gene 24.6 96 0.0021 19.6 2.8 17 6-22 11-28 (134)
47 PF14237 DUF4339: Domain of un 23.0 38 0.00082 17.4 0.5 8 73-80 9-16 (45)
48 PRK05449 aspartate alpha-decar 22.8 44 0.00096 21.7 0.9 21 44-64 36-56 (126)
49 COG1320 MnhG Multisubunit Na+/ 22.2 89 0.0019 19.8 2.2 23 2-24 13-36 (113)
50 PF08488 WAK: Wall-associated 22.2 50 0.0011 20.3 1.1 20 51-70 48-67 (103)
51 COG2165 PulG Type II secretory 21.7 94 0.002 18.6 2.3 16 5-20 17-33 (149)
52 KOG2927|consensus 21.7 51 0.0011 25.1 1.1 19 6-24 198-217 (372)
53 PF12249 AftA_C: Arabinofurano 21.1 1.1E+02 0.0023 21.1 2.5 19 59-79 155-173 (178)
54 PF14991 MLANA: Protein melan- 20.9 27 0.00059 22.4 -0.3 14 2-15 28-42 (118)
55 COG3763 Uncharacterized protei 20.7 1.5E+02 0.0032 17.4 2.7 15 18-32 26-40 (71)
56 TIGR03545 conserved hypothetic 20.2 1.9E+02 0.0042 23.1 4.1 47 15-61 23-70 (555)
No 1
>PF01130 CD36: CD36 family; InterPro: IPR002159 CD36 is a transmembrane, highly glycosylated, 88kDa glycoprotein expressed by monocytes, macrophages, platelets, microvascular endothelial cells and adipose tissues. Platelet glycoprotein IV (GP IV)(GPIIIb) (CD36 antigen) is also called GPIV, OKM5-antigen or PASIV. CD36 recognises oxidized low density lipoprotein, long chain fatty acids, anionic phospholipids, collagen types I, IV and V, thrombospondin (TSP) and Plasmodium falciparum infected erythrocytes. The recognition of apoptotic neutrophils is in co-operation with TSP and avb3. Other ligands may still be unknown. CD36 is a scavenger receptor for oxidized LDL and shed photoreceptor outer segments and in recognition and phagocytosis of apoptotic cells and is the cell adhesion molecule in platelet adhesion and aggregation, platelet-monocyte and platelet-tumor cell interaction []. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0007155 cell adhesion, 0016020 membrane
Probab=99.96 E-value=1.1e-29 Score=190.42 Aligned_cols=80 Identities=45% Similarity=0.830 Sum_probs=76.1
Q ss_pred hhhHHHHHHHH-hHhc-cHHHHHHHHHHhcccCCCCccccccccCCcceeEEEEEEeecChHHhhCCCCCCceEEeccee
Q psy2117 2 TVGALLTLTNI-EVTS-LPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYR 79 (81)
Q Consensus 2 ~vg~~l~~~Gi-~~~~-~p~~i~~~v~~~~~l~~~s~~~~~W~~pp~~~~~~~y~fN~TN~~e~l~g~~kp~~~E~GPY~ 79 (81)
++|++++++|+ +..+ +|++++.+++|+++|++||..|+.|++||.|++++||+||+||||||++|++||+++|+|||+
T Consensus 3 ~~g~~~~~~g~~~~~~~~~~~~~~~i~~~~~L~~~s~~~~~W~~~p~p~~~~~y~fNvTNp~ev~~~g~kP~~~EvGPY~ 82 (467)
T PF01130_consen 3 VVGILLLVLGILLGFVVFPSIIDSQIKKQLVLKPGSDSYDNWKKPPVPIYFKFYFFNVTNPEEVLNGGAKPNVQEVGPYV 82 (467)
T ss_pred eehhHHHHHhHhhhhhhhHHHHHHHHHhCcEECCCChhHhhhhcCCCccEEEEEEEeccCHHHHhCcCCCceEEEeCCEE
Confidence 67999999999 7765 999999999999999999999999999999999999999999999999976699999999999
Q ss_pred eC
Q psy2117 80 FQ 81 (81)
Q Consensus 80 y~ 81 (81)
||
T Consensus 83 y~ 84 (467)
T PF01130_consen 83 YR 84 (467)
T ss_pred EE
Confidence 96
No 2
>KOG3776|consensus
Probab=99.94 E-value=1.2e-27 Score=181.93 Aligned_cols=80 Identities=40% Similarity=0.826 Sum_probs=76.0
Q ss_pred hhhHHHHHHHH-hHhccHHHHHHHHHHhcccCCCCccccccccCCcceeEEEEEEeecChHHhhCCCCCCceEEecceee
Q psy2117 2 TVGALLTLTNI-EVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRF 80 (81)
Q Consensus 2 ~vg~~l~~~Gi-~~~~~p~~i~~~v~~~~~l~~~s~~~~~W~~pp~~~~~~~y~fN~TN~~e~l~g~~kp~~~E~GPY~y 80 (81)
++|++|+++|+ +++.|+.+++++++++++|+|||.++++|.+||.+.++++|+|||||||||++|++||+++|+|||+|
T Consensus 15 v~~~~~~v~g~~~~~~~~~i~~~~v~~~~~L~~gs~~~~~W~~pp~~~~~~~yiFNvTNpde~~~~~~kp~v~EvGPyvy 94 (507)
T KOG3776|consen 15 VIGALLAVAGIVIVVVFPDIIDSMVDKNVVLRPGSDAFESWLNPPYPIYLNFYIFNVTNPDEFLSGGAKPNVQEVGPYVY 94 (507)
T ss_pred HHHHHHHHhhheeeEeeHHHHHHHHHhceeeCCCchhhhhhhcCCCccEEEEEEEecCCHHHhhCcCCCCceEeeCCeEE
Confidence 56888888899 88888999999999999999999999999999999999999999999999999877999999999999
Q ss_pred C
Q psy2117 81 Q 81 (81)
Q Consensus 81 ~ 81 (81)
|
T Consensus 95 ~ 95 (507)
T KOG3776|consen 95 R 95 (507)
T ss_pred E
Confidence 6
No 3
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=56.59 E-value=16 Score=20.30 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHhHhccHHHHHHHHHHhcccCCC
Q psy2117 2 TVGALLTLTNIEVTSLPSFFQLILQKELALSPW 34 (81)
Q Consensus 2 ~vg~~l~~~Gi~~~~~p~~i~~~v~~~~~l~~~ 34 (81)
++|..+++=|+....+|+-.++.+.+-..+.++
T Consensus 4 algLvliiEGl~~~l~P~~~r~~l~~l~~~p~~ 36 (57)
T PF09838_consen 4 ALGLVLIIEGLLPFLAPERWRRMLRQLAQLPDR 36 (57)
T ss_pred HHHHHHHHHhhHHHhCHHHHHHHHHHHHhCCHH
Confidence 457777777887788999888888776665544
No 4
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=55.40 E-value=18 Score=25.95 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=18.5
Q ss_pred EEEeecChHHhhCCCCCCceEEecc
Q psy2117 53 YFFNWTNPEDIRNNETKPNFVEMGP 77 (81)
Q Consensus 53 y~fN~TN~~e~l~g~~kp~~~E~GP 77 (81)
.++.+.| .++..+| ||.+-.+|=
T Consensus 45 ~~~kvsn-~d~~~~G-k~~v~~igw 67 (249)
T PF06053_consen 45 NFFKVSN-QDLAPNG-KPEVIFIGW 67 (249)
T ss_pred ceeeecC-cccCCCC-eeEEEEEec
Confidence 7788888 5577778 999998883
No 5
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=53.04 E-value=11 Score=21.35 Aligned_cols=35 Identities=11% Similarity=-0.145 Sum_probs=20.4
Q ss_pred hhhHHHHHHHH-hHhccHHHHHHHHHHhcccCCCCc
Q psy2117 2 TVGALLTLTNI-EVTSLPSFFQLILQKELALSPWSR 36 (81)
Q Consensus 2 ~vg~~l~~~Gi-~~~~~p~~i~~~v~~~~~l~~~s~ 36 (81)
++|+.|++.|+ +...--+..++.-.|....-.|++
T Consensus 2 iigi~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~ 37 (59)
T PF11381_consen 2 IIGIALLVGGIVLLYFGYQASDSLGSQVSRAFTGSP 37 (59)
T ss_pred eeeehHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCC
Confidence 46889999999 665444445554444333333433
No 6
>PF05745 CRPA: Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); InterPro: IPR008436 Chlamydia is a genus of bacteria, which causes the most common bacterial sexually transmitted diseases. They are obligate intracellular bacterial pathogens. Members of this genus lack a peptidoglycan layer, but as a substitute, it has been proposed that they have several cysteine rich membrane proteins. This includes the major outer membrane protein (MOMP). These form disulphide bonds to provide rigidity to the cell wall. The alignment of the amino acid sequences of the MOMP from various serovars of Chlamydia show that they have between seven and ten cysteine residues; seven of which are highly conserved []. The MOMP has been the focus of efforts to produce a vaccine for Chlamydia trachomatis []. The 15 kDa cysteine-rich protein in this entry is a multi-pass outer membrane protein. They are associated with the differentiation of reticulate bodies (RBs) into elementary bodies (EBs) []. They immunolocalise to the inclusion membrane, which is the membrane that surrounds the intracellular parasite. These proteins are recognised by CD8+ T cells in both human and mouse infections, suggesting they gain access to the host cytoplasm.; GO: 0019867 outer membrane
Probab=51.26 E-value=10 Score=25.05 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=11.7
Q ss_pred ChhhHHHHHHHH-hHh
Q psy2117 1 MTVGALLTLTNI-EVT 15 (81)
Q Consensus 1 ~~vg~~l~~~Gi-~~~ 15 (81)
+++|++|++.|+ +.+
T Consensus 69 ~VlGiiLviagl~l~f 84 (150)
T PF05745_consen 69 VVLGIILVIAGLALTF 84 (150)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 467999999988 544
No 7
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=45.26 E-value=14 Score=20.38 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=8.2
Q ss_pred ChhhHHHHHHHH
Q psy2117 1 MTVGALLTLTNI 12 (81)
Q Consensus 1 ~~vg~~l~~~Gi 12 (81)
|+++++|.++||
T Consensus 19 Li~A~vlfi~Gi 30 (50)
T PF02038_consen 19 LIFAGVLFILGI 30 (50)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 356667777777
No 8
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.10 E-value=14 Score=23.79 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHhHh---ccHHHHHHHHHHhcccCCCCccccccc
Q psy2117 2 TVGALLTLTNIEVT---SLPSFFQLILQKELALSPWSRSFKIWR 42 (81)
Q Consensus 2 ~vg~~l~~~Gi~~~---~~p~~i~~~v~~~~~l~~~s~~~~~W~ 42 (81)
++|.+.+.+||+.+ +.|. ---.+........+|+.++.|.
T Consensus 8 ~iGfl~l~LGIiGifLPlLPT-TPFlLLaa~cFaRsSpRf~~WL 50 (119)
T COG2832 8 ILGFLSLALGIIGIFLPLLPT-TPFLLLAAACFARSSPRFHAWL 50 (119)
T ss_pred HHHHHHHHHHHHHhcCcccCC-cHHHHHHHHHHHcCCcHHHHHH
Confidence 57888888888333 4442 2233455566777888888774
No 9
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=41.43 E-value=41 Score=17.57 Aligned_cols=20 Identities=15% Similarity=0.384 Sum_probs=14.5
Q ss_pred HHHHHHhHhccHHHHHHHHH
Q psy2117 7 LTLTNIEVTSLPSFFQLILQ 26 (81)
Q Consensus 7 l~~~Gi~~~~~p~~i~~~v~ 26 (81)
-++.|++..++|.+++..+.
T Consensus 4 aliaGiLiLi~PrllnyiVa 23 (39)
T PF11295_consen 4 ALIAGILILIMPRLLNYIVA 23 (39)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 45566677788988888764
No 10
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=39.54 E-value=23 Score=24.72 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=12.0
Q ss_pred hhHHHHHHHH-hHhccHHHHHHH
Q psy2117 3 VGALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 3 vg~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
+|++++++|. -++-||+++...
T Consensus 15 iG~~f~ligaIGLlRfPD~YtRL 37 (197)
T PRK12585 15 IGGLLSILAAIGVIRLPDVYTRT 37 (197)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHh
Confidence 4555555555 444567666554
No 11
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=39.20 E-value=21 Score=24.40 Aligned_cols=13 Identities=38% Similarity=0.685 Sum_probs=9.7
Q ss_pred EEEEeecChHHhh
Q psy2117 52 FYFFNWTNPEDIR 64 (81)
Q Consensus 52 ~y~fN~TN~~e~l 64 (81)
-|++|+|||....
T Consensus 138 Aw~iNytNP~~~v 150 (183)
T PF02056_consen 138 AWLINYTNPMGIV 150 (183)
T ss_dssp SEEEE-SSSHHHH
T ss_pred cEEEeccChHHHH
Confidence 4799999998664
No 12
>PRK00523 hypothetical protein; Provisional
Probab=38.42 E-value=49 Score=19.49 Aligned_cols=30 Identities=10% Similarity=0.088 Sum_probs=18.1
Q ss_pred hHHHHHHHH-hHh-ccHHHHHHHHHHhcccCC
Q psy2117 4 GALLTLTNI-EVT-SLPSFFQLILQKELALSP 33 (81)
Q Consensus 4 g~~l~~~Gi-~~~-~~p~~i~~~v~~~~~l~~ 33 (81)
+++++++|. ..+ +-...++++++++-.+++
T Consensus 11 ~i~~li~G~~~Gffiark~~~k~l~~NPpine 42 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKMFKKQIRENPPITE 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCH
Confidence 445555566 433 345677888887766654
No 13
>KOG0938|consensus
Probab=37.44 E-value=11 Score=28.86 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=24.2
Q ss_pred HHHHHHhcccCCCCccccccccCCcceeEEEEEE
Q psy2117 22 QLILQKELALSPWSRSFKIWRSNPVPIYLDFYFF 55 (81)
Q Consensus 22 ~~~v~~~~~l~~~s~~~~~W~~pp~~~~~~~y~f 55 (81)
++++.-++.+.+.+..-++|..||+.+.+++-+|
T Consensus 376 E~tlsAevels~Tt~nkq~WtrPPIsleFeV~MF 409 (446)
T KOG0938|consen 376 ESTLSAEVELSDTTQNKQQWTRPPISLEFEVPMF 409 (446)
T ss_pred cceeEEEEEeccCccccccccCCCceeEEeeeee
Confidence 3344445566665555678999999998888877
No 14
>PRK06580 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=37.28 E-value=57 Score=20.29 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=25.3
Q ss_pred HHHhcccCCCCccccccccCCcceeEEEEEEeecChHHhhCCC
Q psy2117 25 LQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNE 67 (81)
Q Consensus 25 v~~~~~l~~~s~~~~~W~~pp~~~~~~~y~fN~TN~~e~l~g~ 67 (81)
+...+.++|||-+-+ .... .+-++..|..++||+..|.
T Consensus 58 LAnsITLTPGTltvd----v~~d-~L~VHaLd~~d~e~l~~~~ 95 (103)
T PRK06580 58 YGNSITLTPGTVTLD----INNN-MLLVHALNKSSITDLQRGI 95 (103)
T ss_pred HHHHHhCCCCeEEEE----ecCC-eEEEEEecCCCHHHHhcch
Confidence 344556667665422 2212 3889999999999998864
No 15
>PRK10527 hypothetical protein; Provisional
Probab=35.92 E-value=16 Score=23.52 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHhH---hccHHHHHHHHHHhcccCCCCcccccccc
Q psy2117 2 TVGALLTLTNIEV---TSLPSFFQLILQKELALSPWSRSFKIWRS 43 (81)
Q Consensus 2 ~vg~~l~~~Gi~~---~~~p~~i~~~v~~~~~l~~~s~~~~~W~~ 43 (81)
++|.+++.+|++. .+.|+ .--.+.-.-....+|+.+++|-.
T Consensus 8 ~lG~~~~~LG~iGi~LPlLPT-TPFlLLAa~cfaRsSpR~~~WL~ 51 (125)
T PRK10527 8 IIGWLAVVLGTLGVVLPLLPT-TPFILLAAWCFARSSPRFHAWLL 51 (125)
T ss_pred HHHHHHHHHHHHHHhccCCCC-cHHHHHHHHHHHcCCHHHHHHHH
Confidence 5688888888832 25553 23344455666778888777743
No 16
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=34.60 E-value=33 Score=18.99 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=10.4
Q ss_pred hhhHHHHHHHH-hH
Q psy2117 2 TVGALLTLTNI-EV 14 (81)
Q Consensus 2 ~vg~~l~~~Gi-~~ 14 (81)
++|.+++++|+ +.
T Consensus 6 v~G~~lv~~Gii~~ 19 (53)
T PF09656_consen 6 VLGWVLVVAGIIML 19 (53)
T ss_pred hHHHHHHHHHHHhh
Confidence 57889999999 54
No 17
>PF03393 Pneumo_matrix: Pneumovirus matrix protein; InterPro: IPR005056 The matrix proteins of Pneumovirus virus are transcriptional processivity and antitermination factor and play a crucial role in viral assembly.; GO: 0019068 virion assembly, 0019031 viral envelope; PDB: 2VQP_A 2YKD_A.
Probab=33.66 E-value=33 Score=24.54 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=15.8
Q ss_pred EEEEeecChHHhhC--CCCCCceEEeccee
Q psy2117 52 FYFFNWTNPEDIRN--NETKPNFVEMGPYR 79 (81)
Q Consensus 52 ~y~fN~TN~~e~l~--g~~kp~~~E~GPY~ 79 (81)
+-+.++||+..+.. |...-.+.|+|||+
T Consensus 201 ~lvmt~~~~KG~Fk~l~ag~Q~iveLG~Y~ 230 (252)
T PF03393_consen 201 ILVMTMNNPKGAFKKLGAGSQVIVELGAYV 230 (252)
T ss_dssp EEEEE---SSGGGTTS-TT-EEEEE-GGG-
T ss_pred EEEEEecCCcchhhhcCCCcEEEEeccchh
Confidence 45789999998764 32256788999996
No 18
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=32.87 E-value=24 Score=23.29 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=13.9
Q ss_pred hhhHHHHHHHH-hHh--ccHH
Q psy2117 2 TVGALLTLTNI-EVT--SLPS 19 (81)
Q Consensus 2 ~vg~~l~~~Gi-~~~--~~p~ 19 (81)
++|++++++|+ |.+ .||.
T Consensus 44 ~lG~lvllvGiaMAv~GYwp~ 64 (141)
T PF10177_consen 44 LLGILVLLVGIAMAVLGYWPK 64 (141)
T ss_pred HHHHHHHHHhhHhheeecccc
Confidence 57889999999 765 4774
No 19
>PRK12675 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=32.32 E-value=38 Score=21.15 Aligned_cols=22 Identities=9% Similarity=0.295 Sum_probs=12.1
Q ss_pred hhHHHHHHHH-hHhccHHHHHHH
Q psy2117 3 VGALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 3 vg~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
+|+++.++|. -.+-+|+.+...
T Consensus 9 ~G~~f~l~g~iGllR~PD~ytRl 31 (104)
T PRK12675 9 FGYSIMFFGALGLLRFPDVYTRL 31 (104)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHh
Confidence 4555555555 444567666554
No 20
>TIGR01300 CPA3_mnhG_phaG monovalent cation/proton antiporter, MnhG/PhaG subunit. This model represents a subfamily of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti, show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons.
Probab=31.90 E-value=43 Score=20.51 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=14.2
Q ss_pred hhhHHHHHHHH-hHhccHHHHHHH
Q psy2117 2 TVGALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 2 ~vg~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
++|+++.++|. -.+-+|+.+.+.
T Consensus 4 ~~G~~f~l~g~iGllR~pD~y~Rl 27 (97)
T TIGR01300 4 LIGAFFTLLGAIGLVRFPDVYTRL 27 (97)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHh
Confidence 45666666666 555666666554
No 21
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=31.79 E-value=41 Score=24.01 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=11.1
Q ss_pred hhHHHHHHHH-hHhccHHHHHHH
Q psy2117 3 VGALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 3 vg~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
++++++++++ +..+||..++.-
T Consensus 124 ~~~~~~ila~~lFPlWP~~~r~g 146 (232)
T TIGR00869 124 ILVVSIILALVLFPLWPRFMRRG 146 (232)
T ss_pred HHHHHHHHHHhhcccChHHHhHh
Confidence 3444444444 555666555443
No 22
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=31.56 E-value=79 Score=16.87 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=10.6
Q ss_pred hhHHHHHHHHhHhccHH
Q psy2117 3 VGALLTLTNIEVTSLPS 19 (81)
Q Consensus 3 vg~~l~~~Gi~~~~~p~ 19 (81)
.|++++++|++....|.
T Consensus 2 ~Gil~iv~Gi~~l~~p~ 18 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPD 18 (72)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 57777777774444443
No 23
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=30.18 E-value=38 Score=22.46 Aligned_cols=8 Identities=13% Similarity=0.239 Sum_probs=3.6
Q ss_pred ccHHHHHH
Q psy2117 16 SLPSFFQL 23 (81)
Q Consensus 16 ~~p~~i~~ 23 (81)
-+|+++..
T Consensus 32 RfPD~ytR 39 (145)
T PRK12586 32 KFQDVFLR 39 (145)
T ss_pred hCCcHHHH
Confidence 34544443
No 24
>PRK10574 putative major pilin subunit; Provisional
Probab=30.06 E-value=68 Score=20.99 Aligned_cols=20 Identities=10% Similarity=0.481 Sum_probs=12.2
Q ss_pred HHHHHHHH-hHhccHHHHHHH
Q psy2117 5 ALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 5 ~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
+.++++|| ..+.+|.+.+.+
T Consensus 14 IViaIigILaaiaiP~~~~~~ 34 (146)
T PRK10574 14 VVIAIIAILSAIGIPAYQNYL 34 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 34566777 566677665444
No 25
>PF15345 TMEM51: Transmembrane protein 51
Probab=29.88 E-value=29 Score=24.85 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=10.6
Q ss_pred hhhHHHHHHHH-hHh
Q psy2117 2 TVGALLTLTNI-EVT 15 (81)
Q Consensus 2 ~vg~~l~~~Gi-~~~ 15 (81)
++|+-++++|| |++
T Consensus 11 AiG~Gml~LGiiM~v 25 (233)
T PF15345_consen 11 AIGVGMLALGIIMIV 25 (233)
T ss_pred HHhHhHHHHhhHhee
Confidence 46888889999 554
No 26
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=29.63 E-value=37 Score=24.00 Aligned_cols=11 Identities=9% Similarity=0.383 Sum_probs=5.7
Q ss_pred EEEEEEeecCh
Q psy2117 50 LDFYFFNWTNP 60 (81)
Q Consensus 50 ~~~y~fN~TN~ 60 (81)
.=.|=|+.+++
T Consensus 194 ~Ply~~~~~~~ 204 (224)
T PF03839_consen 194 KPLYSWEYKGD 204 (224)
T ss_pred eecccccccCc
Confidence 33555666544
No 27
>PF03334 PhaG_MnhG_YufB: Na+/H+ antiporter subunit; InterPro: IPR005133 This is a family of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti (Sinorhizobium meliloti), show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons. ; GO: 0005451 monovalent cation:hydrogen antiporter activity, 0015672 monovalent inorganic cation transport, 0015992 proton transport
Probab=29.58 E-value=60 Score=19.03 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=16.5
Q ss_pred ChhhHHHHHHHH-hHhccHHHHHHH
Q psy2117 1 MTVGALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 1 ~~vg~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
+.+|+++.+.|. -..-+|+.+.+.
T Consensus 2 l~~G~~~~l~~~iGllR~pd~y~Rl 26 (81)
T PF03334_consen 2 LLLGAFFMLIGAIGLLRFPDFYTRL 26 (81)
T ss_pred cHHHHHHHHHHHHHHHhCCcHHHHh
Confidence 356777777777 666777776654
No 28
>PF14927 Neurensin: Neurensin
Probab=29.07 E-value=35 Score=22.47 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=11.2
Q ss_pred ChhhHHHHHHHH-hH
Q psy2117 1 MTVGALLTLTNI-EV 14 (81)
Q Consensus 1 ~~vg~~l~~~Gi-~~ 14 (81)
+++|++++++|+ .+
T Consensus 48 ~i~g~l~Ll~Gi~~l 62 (140)
T PF14927_consen 48 FISGLLLLLLGIVAL 62 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 367999999999 44
No 29
>PF06799 DUF1230: Protein of unknown function (DUF1230); InterPro: IPR009631 This family represents Ycf36, which is found in plants, encoded in the genomes of algal chloroplasts and in cyanobacteria. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=29.02 E-value=88 Score=20.77 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHHhcccCCCCcccc--ccccCC
Q psy2117 16 SLPSFFQLILQKELALSPWSRSFK--IWRSNP 45 (81)
Q Consensus 16 ~~p~~i~~~v~~~~~l~~~s~~~~--~W~~pp 45 (81)
...+.+.+++.+..+--+.|-=|| .|.+||
T Consensus 85 LGW~YV~~RL~s~tV~YEESGWYDGQ~W~Kp~ 116 (144)
T PF06799_consen 85 LGWSYVGDRLLSATVEYEESGWYDGQVWVKPP 116 (144)
T ss_pred hChHHHHhhhccCcccccccCccCCccccCCH
Confidence 345577777777777777776677 699988
No 30
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=28.75 E-value=37 Score=23.46 Aligned_cols=17 Identities=35% Similarity=0.921 Sum_probs=12.3
Q ss_pred CcceeEEEEEEeecChH
Q psy2117 45 PVPIYLDFYFFNWTNPE 61 (81)
Q Consensus 45 p~~~~~~~y~fN~TN~~ 61 (81)
+.+..+.+|+|||.-|+
T Consensus 162 ~GdG~L~YYLyNwr~~~ 178 (190)
T PF02799_consen 162 PGDGNLNYYLYNWRCPP 178 (190)
T ss_dssp EEEEEEEEEEESEB---
T ss_pred CCCCCeEEEEEeccCCC
Confidence 46889999999998765
No 31
>PRK12592 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=28.54 E-value=42 Score=21.69 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=11.8
Q ss_pred hhHHHHHHHH-hHhccHHHHHHH
Q psy2117 3 VGALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 3 vg~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
+|+++.++|. -++-+|+++...
T Consensus 17 ~G~~f~l~gaiGllRfPD~ytRl 39 (126)
T PRK12592 17 SGAFLSFSASIGLIRFRDTMSRV 39 (126)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHc
Confidence 4555555555 444567666554
No 32
>PRK01844 hypothetical protein; Provisional
Probab=27.96 E-value=94 Score=18.30 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=16.6
Q ss_pred hHHHHHHHH-hHh-ccHHHHHHHHHHhcccCC
Q psy2117 4 GALLTLTNI-EVT-SLPSFFQLILQKELALSP 33 (81)
Q Consensus 4 g~~l~~~Gi-~~~-~~p~~i~~~v~~~~~l~~ 33 (81)
+++.+++|+ ..+ +-...+++.++++=.+.+
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k~lk~NPpine 41 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMNYLQKNPPINE 41 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 344555555 333 335667777777654443
No 33
>PRK12671 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=27.22 E-value=51 Score=21.16 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=10.9
Q ss_pred hhHHHHHHHH-hHhccHHHHHHH
Q psy2117 3 VGALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 3 vg~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
+|+++.++|. -++-+|+++...
T Consensus 21 ~G~~f~l~gaiGllR~PD~ytRl 43 (120)
T PRK12671 21 LGAGLTLIGTIGLVRLKSFYERL 43 (120)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHh
Confidence 3444444444 334466655543
No 34
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=26.96 E-value=94 Score=19.86 Aligned_cols=25 Identities=20% Similarity=0.562 Sum_probs=16.3
Q ss_pred ceeEEEEEEeecChHHhhCCCCCCceEEecc
Q psy2117 47 PIYLDFYFFNWTNPEDIRNNETKPNFVEMGP 77 (81)
Q Consensus 47 ~~~~~~y~fN~TN~~e~l~g~~kp~~~E~GP 77 (81)
.+++..|..+. -.+..+-.++|+||
T Consensus 152 ~I~~R~y~i~~------~~~~~~v~l~eiGP 176 (180)
T smart00879 152 YIFFRHYRIKF------GKKKPRVELQEIGP 176 (180)
T ss_pred EEEEEEEEEEc------cCCCCceEEEEecC
Confidence 46666676655 12233688999999
No 35
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.96 E-value=59 Score=20.87 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=2.1
Q ss_pred HHHHHHH
Q psy2117 21 FQLILQK 27 (81)
Q Consensus 21 i~~~v~~ 27 (81)
++.+.||
T Consensus 88 irR~~Kk 94 (122)
T PF01102_consen 88 IRRLRKK 94 (122)
T ss_dssp HHHHS--
T ss_pred HHHHhcc
Confidence 4444444
No 36
>PRK12670 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.73 E-value=58 Score=20.01 Aligned_cols=22 Identities=23% Similarity=0.649 Sum_probs=12.5
Q ss_pred hhHHHHHHHH-hHhccHHHHHHH
Q psy2117 3 VGALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 3 vg~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
+|+++.++|. -.+-+|+.+.+.
T Consensus 12 ~G~~f~l~g~iGllR~pD~y~Rl 34 (99)
T PRK12670 12 LGIFLIVISVIGVIRFPDFYTRL 34 (99)
T ss_pred HHHHHHHHHHHHHHhCccHHHHh
Confidence 4555555555 444577776654
No 37
>PRK12672 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.62 E-value=54 Score=20.79 Aligned_cols=22 Identities=14% Similarity=0.448 Sum_probs=12.8
Q ss_pred hhHHHHHHHH-hHhccHHHHHHH
Q psy2117 3 VGALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 3 vg~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
+|+++.++|. -.+=+|+++...
T Consensus 13 ~G~~f~l~gaiGllR~PD~ytRl 35 (118)
T PRK12672 13 IGVTFNLLGSIALHRFPDVYTRL 35 (118)
T ss_pred HHHHHHHHHHHHHHhCccHHHHh
Confidence 4555555555 444577776654
No 38
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.95 E-value=54 Score=21.61 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=6.5
Q ss_pred hhhHHHHHHHH
Q psy2117 2 TVGALLTLTNI 12 (81)
Q Consensus 2 ~vg~~l~~~Gi 12 (81)
++|+++++.||
T Consensus 13 ilgilli~~gI 23 (191)
T PF04156_consen 13 ILGILLIASGI 23 (191)
T ss_pred HHHHHHHHHHH
Confidence 45666666666
No 39
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=25.90 E-value=2.1e+02 Score=20.60 Aligned_cols=58 Identities=10% Similarity=0.260 Sum_probs=29.3
Q ss_pred HHHHHHHHhcccCCCCccccccccCCcceeE---EEEEEeecChHHhhCCCCCCceEEecc
Q psy2117 20 FFQLILQKELALSPWSRSFKIWRSNPVPIYL---DFYFFNWTNPEDIRNNETKPNFVEMGP 77 (81)
Q Consensus 20 ~i~~~v~~~~~l~~~s~~~~~W~~pp~~~~~---~~y~fN~TN~~e~l~g~~kp~~~E~GP 77 (81)
+++..+.+...+-+|.+.-+...+--..+.. ++|+=++.=..|.-+++.+-.++|+||
T Consensus 151 ~~Kell~h~F~ip~~arrSkpfiD~v~~f~i~DgkIWvR~YeI~re~ed~~~dv~L~EIGP 211 (283)
T COG5154 151 YAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWVRCYEIGRENEDKSKDVKLEEIGP 211 (283)
T ss_pred HHHHHHHHhccCCCcccccccchhheEEEEEecCeEEEEEEeeccccccccccceeeeecc
Confidence 3455555555565655433333322211111 344444433345445664679999999
No 40
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=25.87 E-value=1.1e+02 Score=16.10 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=13.9
Q ss_pred hHHHHHHHH-hHhccHHHHHHHHHH
Q psy2117 4 GALLTLTNI-EVTSLPSFFQLILQK 27 (81)
Q Consensus 4 g~~l~~~Gi-~~~~~p~~i~~~v~~ 27 (81)
+++.+++|. +.-..-.++++.+++
T Consensus 21 AilIl~vG~~va~~v~~~~~~~l~~ 45 (53)
T PF05552_consen 21 AILILIVGWWVAKFVRKLVRRLLEK 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566 555666666666554
No 41
>COG4968 PilE Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.62 E-value=1e+02 Score=20.39 Aligned_cols=22 Identities=18% Similarity=0.523 Sum_probs=15.1
Q ss_pred HHHHHHHH-hHhccHHHHHHHHH
Q psy2117 5 ALLTLTNI-EVTSLPSFFQLILQ 26 (81)
Q Consensus 5 ~~l~~~Gi-~~~~~p~~i~~~v~ 26 (81)
+..+|+|| ..+..|++-+.+++
T Consensus 15 IvVaIv~ILa~IAyPSY~~yv~r 37 (139)
T COG4968 15 IVVAIVGILALIAYPSYQNYVLR 37 (139)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHH
Confidence 34667788 67788887766654
No 42
>PRK12674 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=25.33 E-value=62 Score=19.75 Aligned_cols=22 Identities=23% Similarity=0.572 Sum_probs=10.9
Q ss_pred hhHHHHHHHH-hHhccHHHHHHH
Q psy2117 3 VGALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 3 vg~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
+|+++.+.|. -..-+|+.+.+.
T Consensus 13 ~G~~f~~~gaiGllR~pD~y~Rl 35 (99)
T PRK12674 13 LGAFFALVGAIGLVRLPDVYTRL 35 (99)
T ss_pred HHHHHHHHHHHHHHhCccHHHHh
Confidence 3444444444 333467766554
No 43
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=25.32 E-value=38 Score=21.60 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=16.5
Q ss_pred CCcceeEEEEEEeecChHHhh
Q psy2117 44 NPVPIYLDFYFFNWTNPEDIR 64 (81)
Q Consensus 44 pp~~~~~~~y~fN~TN~~e~l 64 (81)
..+-.+-++.+||+||-++|-
T Consensus 35 agi~~~E~V~I~Nv~NG~Rf~ 55 (111)
T cd06919 35 AGILPYEKVLVVNVNNGARFE 55 (111)
T ss_pred cCCCCCCEEEEEECCCCcEEE
Confidence 334556689999999999984
No 44
>PRK15076 alpha-galactosidase; Provisional
Probab=24.96 E-value=48 Score=25.28 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.5
Q ss_pred EEEEEEeecChHHhhC
Q psy2117 50 LDFYFFNWTNPEDIRN 65 (81)
Q Consensus 50 ~~~y~fN~TN~~e~l~ 65 (81)
-+-++.|+|||.+++.
T Consensus 139 p~a~iin~tNP~divt 154 (431)
T PRK15076 139 PDALLLNYVNPMAMNT 154 (431)
T ss_pred CCeEEEEcCChHHHHH
Confidence 3679999999999874
No 45
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=24.96 E-value=59 Score=20.70 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=9.3
Q ss_pred hHHHHHHHH-hHhccHHHHHHH
Q psy2117 4 GALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 4 g~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
|+++.++|. -.+-+|+++...
T Consensus 17 G~~~~ligaiGllR~PD~y~Rl 38 (118)
T PRK12587 17 GALISALAAIGLLRLEDVYSRA 38 (118)
T ss_pred HHHHHHHHHHHHHhCCcHHHHh
Confidence 444444444 333455555443
No 46
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=24.64 E-value=96 Score=19.58 Aligned_cols=17 Identities=18% Similarity=0.471 Sum_probs=8.7
Q ss_pred HHHHHHH-hHhccHHHHH
Q psy2117 6 LLTLTNI-EVTSLPSFFQ 22 (81)
Q Consensus 6 ~l~~~Gi-~~~~~p~~i~ 22 (81)
.++++|+ +.++.|.+..
T Consensus 11 vlaIigil~~i~~p~~~~ 28 (134)
T TIGR01710 11 VLVILGLLAALVAPKLFS 28 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4455555 4555555433
No 47
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=23.02 E-value=38 Score=17.38 Aligned_cols=8 Identities=25% Similarity=0.845 Sum_probs=6.0
Q ss_pred EEecceee
Q psy2117 73 VEMGPYRF 80 (81)
Q Consensus 73 ~E~GPY~y 80 (81)
++.|||+.
T Consensus 9 ~~~GP~s~ 16 (45)
T PF14237_consen 9 QQQGPFSL 16 (45)
T ss_pred eEECCcCH
Confidence 67899863
No 48
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=22.81 E-value=44 Score=21.72 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=16.7
Q ss_pred CCcceeEEEEEEeecChHHhh
Q psy2117 44 NPVPIYLDFYFFNWTNPEDIR 64 (81)
Q Consensus 44 pp~~~~~~~y~fN~TN~~e~l 64 (81)
..+-.+-++.+||+||-++|-
T Consensus 36 agi~p~E~V~V~Nv~NG~Rf~ 56 (126)
T PRK05449 36 AGILENEKVQIVNVNNGARFE 56 (126)
T ss_pred cCCCCCCEEEEEECCCCcEEE
Confidence 344556699999999999984
No 49
>COG1320 MnhG Multisubunit Na+/H+ antiporter, MnhG subunit [Inorganic ion transport and metabolism]
Probab=22.23 E-value=89 Score=19.78 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=13.5
Q ss_pred hhhHHHHHHHH-hHhccHHHHHHH
Q psy2117 2 TVGALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 2 ~vg~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
++|+++..+|. -..-+|+.+...
T Consensus 13 liGa~~~l~aaiGl~R~PD~YtRl 36 (113)
T COG1320 13 LIGALFSLLAAIGLLRFPDVYTRL 36 (113)
T ss_pred HHHHHHHHHHHHHHHHCchHHHHH
Confidence 34555555555 445677776655
No 50
>PF08488 WAK: Wall-associated kinase; InterPro: IPR013695 This domain is found together with the eukaryotic protein kinase domain IPR000719 from INTERPRO in plant wall-associated kinases (WAKs) and related proteins. WAKs are serine-threonine kinases which might be involved in signalling to the cytoplasm and are required for cell expansion []. ; GO: 0004674 protein serine/threonine kinase activity, 0016021 integral to membrane
Probab=22.20 E-value=50 Score=20.28 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=15.3
Q ss_pred EEEEEeecChHHhhCCCCCC
Q psy2117 51 DFYFFNWTNPEDIRNNETKP 70 (81)
Q Consensus 51 ~~y~fN~TN~~e~l~g~~kp 70 (81)
..|.+|+|+|+++.+.+-.|
T Consensus 48 ~~~~~n~t~p~~~~~~~y~p 67 (103)
T PF08488_consen 48 DWFSSNITDPEDFHAMGYVP 67 (103)
T ss_pred ccccccCCChHHhccCCeeE
Confidence 56889999999987754345
No 51
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.74 E-value=94 Score=18.64 Aligned_cols=16 Identities=31% Similarity=0.600 Sum_probs=9.0
Q ss_pred HHHHHHHH-hHhccHHH
Q psy2117 5 ALLTLTNI-EVTSLPSF 20 (81)
Q Consensus 5 ~~l~~~Gi-~~~~~p~~ 20 (81)
+.++++|| ..++.|.+
T Consensus 17 Vvl~Iigil~~~~~p~~ 33 (149)
T COG2165 17 VVLAIIGILAALALPSL 33 (149)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45666666 55555544
No 52
>KOG2927|consensus
Probab=21.73 E-value=51 Score=25.15 Aligned_cols=19 Identities=16% Similarity=0.050 Sum_probs=9.9
Q ss_pred HHHHHHH-hHhccHHHHHHH
Q psy2117 6 LLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 6 ~l~~~Gi-~~~~~p~~i~~~ 24 (81)
.+++++| +..+||..++..
T Consensus 198 vl~tlaivLFPLWP~~mR~g 217 (372)
T KOG2927|consen 198 VLVTLAIVLFPLWPRRMRQG 217 (372)
T ss_pred HHHHHHHHhcccCcHHHhcc
Confidence 3444444 555777555444
No 53
>PF12249 AftA_C: Arabinofuranosyltransferase A C terminal; InterPro: IPR020959 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the C-terminal domain of AftA.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=21.15 E-value=1.1e+02 Score=21.11 Aligned_cols=19 Identities=21% Similarity=0.623 Sum_probs=13.6
Q ss_pred ChHHhhCCCCCCceEEeccee
Q psy2117 59 NPEDIRNNETKPNFVEMGPYR 79 (81)
Q Consensus 59 N~~e~l~g~~kp~~~E~GPY~ 79 (81)
|++-| ... .=.++|+|||+
T Consensus 155 ~~~~F-d~p-~f~v~~vGPFv 173 (178)
T PF12249_consen 155 DPEVF-DDP-RFTVTQVGPFV 173 (178)
T ss_pred CHHHc-CCC-CCeEeeeCCeE
Confidence 55555 433 57899999997
No 54
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=20.94 E-value=27 Score=22.43 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=2.1
Q ss_pred hhhHHHHHHHH-hHh
Q psy2117 2 TVGALLTLTNI-EVT 15 (81)
Q Consensus 2 ~vg~~l~~~Gi-~~~ 15 (81)
++|++.+|+|+ +++
T Consensus 28 GIGiL~VILgiLLli 42 (118)
T PF14991_consen 28 GIGILIVILGILLLI 42 (118)
T ss_dssp SSS------------
T ss_pred cceeHHHHHHHHHHH
Confidence 57889999999 555
No 55
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.66 E-value=1.5e+02 Score=17.44 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhcccC
Q psy2117 18 PSFFQLILQKELALS 32 (81)
Q Consensus 18 p~~i~~~v~~~~~l~ 32 (81)
...++++++++=.+.
T Consensus 26 rk~~~k~lk~NPpin 40 (71)
T COG3763 26 RKQMKKQLKDNPPIN 40 (71)
T ss_pred HHHHHHHHhhCCCCC
Confidence 455666666654443
No 56
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.17 E-value=1.9e+02 Score=23.06 Aligned_cols=47 Identities=11% Similarity=0.132 Sum_probs=30.5
Q ss_pred hccHHHHHHHHHHhcccCCCCcc-ccccccCCcceeEEEEEEeecChH
Q psy2117 15 TSLPSFFQLILQKELALSPWSRS-FKIWRSNPVPIYLDFYFFNWTNPE 61 (81)
Q Consensus 15 ~~~p~~i~~~v~~~~~l~~~s~~-~~~W~~pp~~~~~~~y~fN~TN~~ 61 (81)
+.+|.+++.++.+.+.=.-|... .+.-.-.+.|.-+++.=+-++||+
T Consensus 23 ~~~dp~~K~~ie~~~seatGreV~Ig~V~lslfpl~l~i~gl~Vanp~ 70 (555)
T TIGR03545 23 FFFDPLAKKAIERSLEKAFGAKVEIAQVDTGLFPLQLSIQGLQVTDPD 70 (555)
T ss_pred HhCCHHHHHHHHHHHHHHHCCeEEEeEEEeeecCCeEEEeeEEEeCCC
Confidence 46788899999888876666553 333222334566666667778886
Done!