Query psy2117
Match_columns 81
No_of_seqs 105 out of 468
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:31:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jo1_A Phospholemman; FXYD1, N 41.9 11 0.00037 21.4 1.3 13 1-13 21-33 (72)
2 2jp3_A FXYD domain-containing 40.6 12 0.0004 21.0 1.3 14 1-14 22-35 (67)
3 3n2f_G Na+/K+ ATPase gamma sub 40.1 20 0.00067 17.1 1.9 12 1-12 15-26 (31)
4 2zxe_G FXYD10, phospholemman-l 35.6 15 0.00053 20.9 1.3 12 1-12 24-35 (74)
5 1oqw_A Fimbrial protein; type 34.3 35 0.0012 20.7 2.9 20 5-24 8-28 (144)
6 3sok_A Fimbrial protein; pilus 30.2 44 0.0015 20.5 2.9 20 5-24 8-28 (151)
7 2vqp_A Matrix protein; viral p 28.3 36 0.0012 23.4 2.3 28 52-79 202-231 (257)
8 2hi2_A Fimbrial protein; type 27.9 41 0.0014 20.6 2.4 19 5-23 8-27 (158)
9 3u95_A Glycoside hydrolase, fa 24.0 31 0.0011 25.4 1.5 15 51-65 152-166 (477)
10 1up7_A 6-phospho-beta-glucosid 19.4 45 0.0016 24.2 1.6 15 51-65 134-148 (417)
No 1
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=41.89 E-value=11 Score=21.43 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=8.6
Q ss_pred ChhhHHHHHHHHh
Q psy2117 1 MTVGALLTLTNIE 13 (81)
Q Consensus 1 ~~vg~~l~~~Gi~ 13 (81)
|+++++|.++||+
T Consensus 21 LifA~vLfi~GI~ 33 (72)
T 2jo1_A 21 LVIAGILFILGIL 33 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3566777777773
No 2
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=40.59 E-value=12 Score=21.03 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=9.3
Q ss_pred ChhhHHHHHHHHhH
Q psy2117 1 MTVGALLTLTNIEV 14 (81)
Q Consensus 1 ~~vg~~l~~~Gi~~ 14 (81)
|+++++|.++||++
T Consensus 22 LifA~vLfi~GI~i 35 (67)
T 2jp3_A 22 LIFGGLLCIAGIAL 35 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 35677777778833
No 3
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=40.08 E-value=20 Score=17.08 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=8.5
Q ss_pred ChhhHHHHHHHH
Q psy2117 1 MTVGALLTLTNI 12 (81)
Q Consensus 1 ~~vg~~l~~~Gi 12 (81)
|++++++.++|+
T Consensus 15 Li~a~vLfi~gi 26 (31)
T 3n2f_G 15 LIFAALAFIVGL 26 (31)
T ss_dssp TTTHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 456677777777
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=35.62 E-value=15 Score=20.91 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=8.8
Q ss_pred ChhhHHHHHHHH
Q psy2117 1 MTVGALLTLTNI 12 (81)
Q Consensus 1 ~~vg~~l~~~Gi 12 (81)
|+++++|.++||
T Consensus 24 LifA~vLfi~GI 35 (74)
T 2zxe_G 24 LIVAAVLCVIGI 35 (74)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 356777888888
No 5
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=34.31 E-value=35 Score=20.67 Aligned_cols=20 Identities=10% Similarity=0.459 Sum_probs=11.5
Q ss_pred HHHHHHHH-hHhccHHHHHHH
Q psy2117 5 ALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 5 ~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
+.++++|| ..+.+|.+.+.+
T Consensus 8 ivi~Ii~il~~ia~p~~~~~~ 28 (144)
T 1oqw_A 8 IVVAIIGILAAIAIPQYQNYV 28 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 34566677 566667654433
No 6
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=30.20 E-value=44 Score=20.52 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=12.3
Q ss_pred HHHHHHHH-hHhccHHHHHHH
Q psy2117 5 ALLTLTNI-EVTSLPSFFQLI 24 (81)
Q Consensus 5 ~~l~~~Gi-~~~~~p~~i~~~ 24 (81)
+.++++|| ..+.+|.+.+.+
T Consensus 8 vviaIigiLaaia~p~~~~~~ 28 (151)
T 3sok_A 8 IVVAIIGILAAFAIPAYNDYI 28 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 35666777 666777665544
No 7
>2vqp_A Matrix protein; viral protein, peripheral membrane Pro RSV, virion, envelope protein; HET: GOL; 1.60A {Human respiratory syncytial virus} PDB: 2ykd_A
Probab=28.30 E-value=36 Score=23.38 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=20.9
Q ss_pred EEEEeecChHHhhC--CCCCCceEEeccee
Q psy2117 52 FYFFNWTNPEDIRN--NETKPNFVEMGPYR 79 (81)
Q Consensus 52 ~y~fN~TN~~e~l~--g~~kp~~~E~GPY~ 79 (81)
+-+.++||+..... |...-.+.|+|||+
T Consensus 202 ilvit~~~~KG~FK~l~agsQ~iveLG~Y~ 231 (257)
T 2vqp_A 202 LLVITVTDNKGAFKYIKPQSQFIVDLGAYL 231 (257)
T ss_dssp EEEEECCCSSGGGTTSCTTCEEEEECGGGC
T ss_pred EEEEEecCCcchHhhcCCCcEEEEeccchh
Confidence 46789999997754 32256788999996
No 8
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=27.94 E-value=41 Score=20.56 Aligned_cols=19 Identities=16% Similarity=0.508 Sum_probs=10.9
Q ss_pred HHHHHHHH-hHhccHHHHHH
Q psy2117 5 ALLTLTNI-EVTSLPSFFQL 23 (81)
Q Consensus 5 ~~l~~~Gi-~~~~~p~~i~~ 23 (81)
+.++++|| ..+.+|.+.+.
T Consensus 8 vvi~ii~il~~~~~p~~~~~ 27 (158)
T 2hi2_A 8 IVIAIVGILAAVALPAYQDY 27 (158)
T ss_dssp HHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677 55666655443
No 9
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=24.04 E-value=31 Score=25.44 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=12.3
Q ss_pred EEEEEeecChHHhhC
Q psy2117 51 DFYFFNWTNPEDIRN 65 (81)
Q Consensus 51 ~~y~fN~TN~~e~l~ 65 (81)
+-++.|+|||.+.+.
T Consensus 152 ~A~~in~tNP~~i~t 166 (477)
T 3u95_A 152 KAYLMQTANPVFEIT 166 (477)
T ss_dssp TCEEEECSSCHHHHH
T ss_pred CeEEEEecChHHHHH
Confidence 458999999998763
No 10
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Probab=19.43 E-value=45 Score=24.15 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.6
Q ss_pred EEEEEeecChHHhhC
Q psy2117 51 DFYFFNWTNPEDIRN 65 (81)
Q Consensus 51 ~~y~fN~TN~~e~l~ 65 (81)
+-++.|+|||-+++.
T Consensus 134 ~A~lin~TNPvdi~t 148 (417)
T 1up7_A 134 NATIVNFTNPSGHIT 148 (417)
T ss_dssp CCEEEECSSSHHHHH
T ss_pred CEEEEEeCChHHHHH
Confidence 568999999999863
Done!