RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2117
         (81 letters)



>gnl|CDD|216316 pfam01130, CD36, CD36 family.  The CD36 family is thought to be a
          novel class of scavenger receptors. There is also
          evidence suggesting a possible role in signal
          transduction. CD36 is involved in cell adhesion.
          Length = 460

 Score = 87.3 bits (217), Expect = 5e-22
 Identities = 28/63 (44%), Positives = 39/63 (61%)

Query: 18 PSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGP 77
          P   + IL+K+L L P S +F+ W + PVP+Y   Y FN TNPE++ N   KP   E+GP
Sbjct: 21 PDIVKSILKKQLVLRPGSDTFESWENPPVPLYFKVYLFNVTNPEEVLNGGAKPIVEEVGP 80

Query: 78 YRF 80
          Y +
Sbjct: 81 YVY 83


>gnl|CDD|237493 PRK13762, PRK13762, tRNA-modifying enzyme; Provisional.
          Length = 322

 Score = 25.6 bits (57), Expect = 2.9
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 41 WRSNPVPIYLDFYFFNWTNPEDI 63
          WR     + L+     W +PE+I
Sbjct: 76 WRPLEEDVGLELKEPEWDDPEEI 98


>gnl|CDD|144261 pfam00603, Flu_PA, Influenza RNA-dependent RNA polymerase subunit
           PA. 
          Length = 669

 Score = 24.8 bits (54), Expect = 6.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 42  RSNPVPIYLDFYFFNWTNPEDIRNNETKPN 71
                 I +D  FF+ + PE IR +E  PN
Sbjct: 267 TDQEGIILIDSTFFSQSEPECIRPSEKTPN 296


>gnl|CDD|114764 pfam06060, Mesothelin, Pre-pro-megakaryocyte potentiating factor
           precursor (Mesothelin).  This family consists of several
           mammalian pre-pro-megakaryocyte potentiating factor
           precursor (MPF) or mesothelin proteins. Mesothelin is a
           glycosylphosphatidylinositol-linked glycoprotein highly
           expressed in mesothelial cells, mesotheliomas, and
           ovarian cancer, but the biological function of the
           protein is not known.
          Length = 625

 Score = 24.5 bits (53), Expect = 8.5
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 53  YFFNWTNPEDIRN-NETKPNFVE 74
           +FF + +PEDIR  N T P+ V+
Sbjct: 376 HFFRYVSPEDIRQWNVTSPDTVK 398


>gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional.
          Length = 409

 Score = 24.4 bits (53), Expect = 8.9
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 16/69 (23%)

Query: 12  IEV-TSLPSFFQLILQKELALSPWSRSFKIWRSNPVPI------------YLDFYFFNWT 58
           I V T +P F  L+ +K L   P    +K     P  +              DF  F++T
Sbjct: 295 IGVETRVPLFLALVKKKIL---PLDVLYKTAIERPASLFGIKKGKIEEGYDADFMAFDFT 351

Query: 59  NPEDIRNNE 67
           N + I +  
Sbjct: 352 NIKKINDKR 360


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,270,716
Number of extensions: 335141
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 10
Length of query: 81
Length of database: 10,937,602
Length adjustment: 50
Effective length of query: 31
Effective length of database: 8,719,902
Effective search space: 270316962
Effective search space used: 270316962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.3 bits)