RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2117
         (81 letters)



>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
           vulgare), 1,3-beta-glucanase [TaxId: 4513]}
          Length = 306

 Score = 24.6 bits (53), Expect = 1.4
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 38  FKIWRSNPVPIYLDFYFFNWTNPEDIRNN 66
           +  +R NP  I L++  F        +NN
Sbjct: 170 YFAYRDNPGSISLNYATFQPGTTVRDQNN 198


>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 392

 Score = 24.5 bits (53), Expect = 1.9
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 5/45 (11%)

Query: 33  PWSRSFKIWRSNPVPIYLDFYFFNW-----TNPEDIRNNETKPNF 72
           P+ +  K     P+ +Y D    NW       P    N +   +F
Sbjct: 99  PYCQLSKKLELPPILVYADCVLANWKKKDPNKPLTYENMDVLFSF 143


>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha
           chain {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 597

 Score = 23.5 bits (49), Expect = 3.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 50  LDFYFFNWTNPEDIRN 65
           +D    N+ N ED+ N
Sbjct: 504 VDPQLVNFRNAEDVWN 519


>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
           vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]}
          Length = 306

 Score = 23.4 bits (50), Expect = 4.5
 Identities = 6/38 (15%), Positives = 12/38 (31%)

Query: 38  FKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEM 75
           +  W  NP  + + +  FN +            N  + 
Sbjct: 172 YLAWAYNPSAMDMGYALFNASGTVVRDGAYGYQNLFDT 209


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0408    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 331,748
Number of extensions: 13659
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 8
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)