BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2118
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NE7|A Chain A, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|B Chain B, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|C Chain C, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|D Chain D, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|E Chain E, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|F Chain F, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
Length = 289
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/154 (72%), Positives = 127/154 (82%), Gaps = 5/154 (3%)
Query: 31 PDNYFVLG-----LPTECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLK 85
P+N +L L EC +E+ IK AGGI LFVGGIGPDGHIAFNEPGSSL SRTR+K
Sbjct: 101 PENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVK 160
Query: 86 TLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGV 145
TLA +T+ ANARFFD ++ KVP ALTVGVGTVMDA+EVMILITG+HKAFALYKA+EEGV
Sbjct: 161 TLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV 220
Query: 146 NHMWTVSAFQMHPCTIMICDEDATQELRVKTVNF 179
NHMWTVSAFQ HP T+ +CDEDAT EL+VKTV +
Sbjct: 221 NHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKY 254
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 98/120 (81%), Positives = 109/120 (90%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
GIGPDGHIAFNEPGSSL SRTR+KTLA +T+ ANARFFD ++ KVP ALTVGVGTVMDA
Sbjct: 137 GIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDA 196
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFK 354
+EVMILITG+HKAFALYKA+EEGVNHMWTVSAFQ HP T+ +CDEDAT EL+VKTVKYFK
Sbjct: 197 REVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFK 256
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
M+LIIL+ S +EW+A+Y+ +I F PGP+ YF LGLPT
Sbjct: 1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPT 41
>pdb|1HOR|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOR|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOT|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOT|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1CD5|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T Conformer
pdb|1FQO|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FQO|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FRZ|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FRZ|B Chain B, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS5|B Chain B, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS6|A Chain A, Glucosamine-6-phosphate Deaminase From E.coli, T
Conformer, At 2.2a Resolution
pdb|1FSF|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 1.9a Resolution
pdb|2WU1|A Chain A, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites.
pdb|2WU1|B Chain B, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites
Length = 266
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 91/138 (65%), Positives = 111/138 (80%)
Query: 42 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDN 101
EC QYE+ I+ G IHLF+GG+G DGHIAFNEP SSLASRTR+KTL +T AN+RFFDN
Sbjct: 117 ECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDN 176
Query: 102 DIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTI 161
D+ +VPK ALTVGVGT++DA+EVMIL+ GS KA AL AVE VNHMWT+S Q+HP I
Sbjct: 177 DVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAI 236
Query: 162 MICDEDATQELRVKTVNF 179
M+CDE +T EL+VKT+ +
Sbjct: 237 MVCDEPSTMELKVKTLRY 254
Score = 177 bits (449), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 98/119 (82%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G DGHIAFNEP SSLASRTR+KTL +T AN+RFFDND+ +VPK ALTVGVGT++DA
Sbjct: 137 GVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDA 196
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYF 353
+EVMIL+ GS KA AL AVE VNHMWT+S Q+HP IM+CDE +T EL+VKT++YF
Sbjct: 197 EEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYF 255
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
MRLI L V +W+AR+++ +I FKP D FVLGLPT
Sbjct: 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPT 41
>pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of The
Glucosamine-6-Phosphate Deaminase From E.Coli
Length = 266
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 110/138 (79%)
Query: 42 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDN 101
EC QYE+ I+ G IHLF+GG+G DGHIAFNEP SSLASRTR+KTL +T AN+RF DN
Sbjct: 117 ECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFADN 176
Query: 102 DIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTI 161
D+ +VPK ALTVGVGT++DA+EVMIL+ GS KA AL AVE VNHMWT+S Q+HP I
Sbjct: 177 DVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAI 236
Query: 162 MICDEDATQELRVKTVNF 179
M+CDE +T EL+VKT+ +
Sbjct: 237 MVCDEPSTMELKVKTLRY 254
Score = 174 bits (440), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 97/119 (81%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G DGHIAFNEP SSLASRTR+KTL +T AN+RF DND+ +VPK ALTVGVGT++DA
Sbjct: 137 GVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFADNDVNQVPKYALTVGVGTLLDA 196
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYF 353
+EVMIL+ GS KA AL AVE VNHMWT+S Q+HP IM+CDE +T EL+VKT++YF
Sbjct: 197 EEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYF 255
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
MRLI L V +W+AR+++ +I FKP D FVLGLPT
Sbjct: 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPT 41
>pdb|3HN6|A Chain A, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|B Chain B, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|C Chain C, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|D Chain D, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|E Chain E, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|F Chain F, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
Length = 289
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 83/126 (65%), Positives = 106/126 (84%)
Query: 54 GGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTV 113
GGI LFVGGIGPDGHIAFNEPGSSL SRTR+KTL Q+T+ AN+RFF+ D+ KVPK ALTV
Sbjct: 150 GGIMLFVGGIGPDGHIAFNEPGSSLTSRTRIKTLTQDTIIANSRFFEGDVNKVPKNALTV 209
Query: 114 GVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 173
G+GT+MD+QEV+I++ G +KA AL A+E+GVNHMWT+SA Q+H I++ D++AT EL+
Sbjct: 210 GIGTIMDSQEVLIIVNGHNKARALKHAIEKGVNHMWTISALQLHKNAIIVSDKNATYELK 269
Query: 174 VKTVNF 179
V TV +
Sbjct: 270 VGTVEY 275
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 78/119 (65%), Positives = 101/119 (84%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
GIGPDGHIAFNEPGSSL SRTR+KTL Q+T+ AN+RFF+ D+ KVPK ALTVG+GT+MD+
Sbjct: 158 GIGPDGHIAFNEPGSSLTSRTRIKTLTQDTIIANSRFFEGDVNKVPKNALTVGIGTIMDS 217
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYF 353
QEV+I++ G +KA AL A+E+GVNHMWT+SA Q+H I++ D++AT EL+V TV+YF
Sbjct: 218 QEVLIIVNGHNKARALKHAIEKGVNHMWTISALQLHKNAIIVSDKNATYELKVGTVEYF 276
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
MRLII ++++W+A +V +KI +F P +N F+LGLPT
Sbjct: 22 MRLIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPT 62
>pdb|2BKV|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKV|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
Length = 242
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Query: 39 LPTECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARF 98
L EC +YE+ + G + + GIG +GHI FNEPG+S SRT + TL ++T +ANAR+
Sbjct: 109 LEAECRRYEQLVDSLGDTDIQLLGIGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARY 168
Query: 99 FDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHP 158
F + I VPK+ALT+G+ T++ ++ +++LI+G KA A+ K +E ++ + SA +H
Sbjct: 169 FPS-IDSVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNISEDFPASALHLHS 227
Query: 159 CTIMICDEDA 168
++ D +A
Sbjct: 228 DVTVLIDREA 237
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 23/184 (12%)
Query: 174 VKTVNFEQ---LCINYANEHLQYYFNQHVFQY-------------EQEEYNKEGIRWRHI 217
+ TVN ++ L + N + +Y N FQ+ ++ E R+ +
Sbjct: 61 ITTVNLDEYAGLSSDDPNSY-HFYMNDRFFQHIDSKPSRHFIPNGNADDLEAECRRYEQL 119
Query: 218 EFSDNTLCLQLVEGKPNGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIK 277
S +QL+ GIG +GHI FNEPG+S SRT + TL ++T +ANAR+F + I
Sbjct: 120 VDSLGDTDIQLL-----GIGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARYFPS-ID 173
Query: 278 KVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMIC 337
VPK+ALT+G+ T++ ++ +++LI+G KA A+ K +E ++ + SA +H ++
Sbjct: 174 SVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNISEDFPASALHLHSDVTVLI 233
Query: 338 DEDA 341
D +A
Sbjct: 234 DREA 237
>pdb|2RI0|A Chain A, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) From S. Mutans
pdb|2RI0|B Chain B, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) From S. Mutans
Length = 234
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Query: 193 YYFNQHVFQYE--QEEYNKEGIRW---RHIEFSDNTLCLQLVEGKPNGIGPDGHIAFNEP 247
Y+ Q++F + ++ Y G+ + E+ D L ++ + GIG + HI FNEP
Sbjct: 78 YFMKQNLFAAKPFKKSYLPNGLAADLAKETEYYDQILAQYPIDLQILGIGRNAHIGFNEP 137
Query: 248 GSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKA 307
G++ +S+T L L T+ AN+RFF+ + VPK+A+++G+ ++M A+ ++++ G KA
Sbjct: 138 GTAFSSQTHLVDLTPSTIAANSRFFEK-AEDVPKQAISMGLASIMSAKMILLMAFGEEKA 196
Query: 308 FALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDA 341
A+ V+ V S Q HP I+I DE A
Sbjct: 197 EAVAAMVKGPVTEEIPASILQTHPKVILIVDEKA 230
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 4/144 (2%)
Query: 28 KPGPDNYFVLGLPTECV---QYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRL 84
KP +Y GL + +Y I I L + GIG + HI FNEPG++ +S+T L
Sbjct: 88 KPFKKSYLPNGLAADLAKETEYYDQILAQYPIDLQILGIGRNAHIGFNEPGTAFSSQTHL 147
Query: 85 KTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEG 144
L T+ AN+RFF+ + VPK+A+++G+ ++M A+ ++++ G KA A+ V+
Sbjct: 148 VDLTPSTIAANSRFFEK-AEDVPKQAISMGLASIMSAKMILLMAFGEEKAEAVAAMVKGP 206
Query: 145 VNHMWTVSAFQMHPCTIMICDEDA 168
V S Q HP I+I DE A
Sbjct: 207 VTEEIPASILQTHPKVILIVDEKA 230
>pdb|2RI1|A Chain A, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) With Glcn6p From S. Mutans
pdb|2RI1|B Chain B, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) With Glcn6p From S. Mutans
Length = 235
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Query: 193 YYFNQHVFQYE--QEEYNKEGIRW---RHIEFSDNTLCLQLVEGKPNGIGPDGHIAFNEP 247
Y+ Q++F + ++ Y G+ + E+ D L ++ + GIG + HI FNEP
Sbjct: 79 YFMKQNLFAAKPFKKSYLPNGLAADLAKETEYYDQILAQYPIDLQILGIGRNAHIGFNEP 138
Query: 248 GSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKA 307
G++ +S+T L L T+ AN+RFF+ + VPK+A+++G+ ++M A+ ++++ G KA
Sbjct: 139 GTAFSSQTHLVDLTPSTIAANSRFFEK-AEDVPKQAISMGLASIMSAKMILLMAFGEEKA 197
Query: 308 FALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDA 341
A+ V+ V S Q HP I+I DE A
Sbjct: 198 EAVAAMVKGPVTEEIPASILQTHPKVILIVDEKA 231
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 4/144 (2%)
Query: 28 KPGPDNYFVLGLPTECV---QYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRL 84
KP +Y GL + +Y I I L + GIG + HI FNEPG++ +S+T L
Sbjct: 89 KPFKKSYLPNGLAADLAKETEYYDQILAQYPIDLQILGIGRNAHIGFNEPGTAFSSQTHL 148
Query: 85 KTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEG 144
L T+ AN+RFF+ + VPK+A+++G+ ++M A+ ++++ G KA A+ V+
Sbjct: 149 VDLTPSTIAANSRFFEK-AEDVPKQAISMGLASIMSAKMILLMAFGEEKAEAVAAMVKGP 207
Query: 145 VNHMWTVSAFQMHPCTIMICDEDA 168
V S Q HP I+I DE A
Sbjct: 208 VTEEIPASILQTHPKVILIVDEKA 231
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ +FN H+F EQEEY KEGI+W I+F D +C+ L+E KP GI
Sbjct: 472 SFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIQWEFIDFGMDLQMCIDLIE-KPMGI 530
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ +FN H+F EQEEY KEGI+W I+F D +C+ L+E KP GI
Sbjct: 473 SFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIQWEFIDFGMDLQMCIDLIE-KPMGI 531
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP GI
Sbjct: 471 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGI 529
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP GI
Sbjct: 471 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGI 529
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 39/55 (70%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 232
+FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK 502
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP GI
Sbjct: 471 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGI 529
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 39/55 (70%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 232
+FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK 502
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP GI
Sbjct: 467 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGI 525
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP GI
Sbjct: 466 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGI 524
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 39/55 (70%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 232
+FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK 502
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D C++L+E KP GI
Sbjct: 474 SFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIVWEFIDFGLDLQACIELIE-KPMGI 532
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C++L+E KP GI
Sbjct: 471 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIE-KPMGI 529
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP GI
Sbjct: 472 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGI 530
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 473 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 532
Query: 233 PNGI 236
P GI
Sbjct: 533 PPGI 536
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 233 PNGI 236
P GI
Sbjct: 522 PPGI 525
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 461 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 520
Query: 233 PNGI 236
P GI
Sbjct: 521 PPGI 524
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 233 PNGI 236
P GI
Sbjct: 522 PPGI 525
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 116 GTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCT------IMICDEDAT 169
G + AQ + + + S + AL KA+ G +W V C+ I + D
Sbjct: 401 GRDLVAQHLNVEKSSSSRD-ALVKALY-GRLFLWLVKKINNVLCSERKAYFIGVLDISGF 458
Query: 170 QELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQL 228
+ +V + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L
Sbjct: 459 EIFKVNS--FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDL 516
Query: 229 VEGK-PNGI 236
++G+ P GI
Sbjct: 517 IDGRQPPGI 525
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 473 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 532
Query: 233 PNGI 236
P GI
Sbjct: 533 PPGI 536
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 461 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 520
Query: 233 PNGI 236
P GI
Sbjct: 521 PPGI 524
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 233 PNGI 236
P GI
Sbjct: 522 PPGI 525
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 473 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 532
Query: 233 PNGI 236
P GI
Sbjct: 533 PPGI 536
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 233 PNGI 236
P GI
Sbjct: 522 PPGI 525
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 116 GTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCT------IMICDEDAT 169
G + AQ + + + S + AL KA+ G +W V C+ I + D
Sbjct: 401 GRDLVAQHLNVEKSSSSRD-ALVKALY-GRLFLWLVKKINNVLCSERKAYFIGVLDISGF 458
Query: 170 QELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQL 228
+ +V + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L
Sbjct: 459 EIFKVNS--FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDL 516
Query: 229 VEGK-PNGI 236
++G+ P GI
Sbjct: 517 IDGRQPPGI 525
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 233 PNGI 236
P GI
Sbjct: 522 PPGI 525
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 233 PNGI 236
P GI
Sbjct: 522 PPGI 525
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 461 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 520
Query: 233 PNGI 236
P GI
Sbjct: 521 PPGI 524
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 461 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 520
Query: 233 PNGI 236
P GI
Sbjct: 521 PPGI 524
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 473 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 532
Query: 233 PNGI 236
P GI
Sbjct: 533 PPGI 536
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 461 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 520
Query: 233 PNGI 236
P GI
Sbjct: 521 PPGI 524
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 233 PNGI 236
P GI
Sbjct: 522 PPGI 525
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 233 PNGI 236
P GI
Sbjct: 522 PPGI 525
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 116 GTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCT------IMICDEDAT 169
G + AQ + + + S + AL KA+ G +W V C+ I + D
Sbjct: 401 GRDLVAQHLNVEKSSSSRD-ALVKALY-GRLFLWLVKKINNVLCSERAAYFIGVLDISGF 458
Query: 170 QELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQL 228
+ +V + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L
Sbjct: 459 EIFKVNS--FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDL 516
Query: 229 VEGK-PNGI 236
++G+ P GI
Sbjct: 517 IDGRQPPGI 525
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 461 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 520
Query: 233 PNGI 236
P GI
Sbjct: 521 PPGI 524
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 233 PNGI 236
P GI
Sbjct: 522 PPGI 525
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK- 232
K +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 233 PNGI 236
P GI
Sbjct: 522 PPGI 525
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCIN+ NE LQ +FN H+F EQEEY EGI W I+F D C++L+E P GI
Sbjct: 474 SFEQLCINFTNEXLQQFFNHHMFVLEQEEYXXEGIEWEFIDFGMDLAACIELIE-XPMGI 532
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCIN+ NE LQ +FN H+F EQEEY EGI W I+F D C++L+E P GI
Sbjct: 471 SFEQLCINFTNEXLQQFFNHHMFVLEQEEYXXEGIEWEFIDFGMDLAACIELIE-XPMGI 529
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 116 GTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCT------IMICDEDAT 169
G + AQ + + + S + AL KA+ G +W V C+ I + D
Sbjct: 401 GRDLVAQHLNVEKSSSSRD-ALVKALY-GRLFLWLVKKINNVLCSERKAYFIGVLDISGF 458
Query: 170 QELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQL 228
+ +V + FEQLCINY NE LQ +FN H+F+ EQE+Y KE I W I+F D+ + L
Sbjct: 459 EIFKVNS--FEQLCINYTNEKLQQFFNHHMFKVEQEKYLKEKINWTFIDFGLDSQATIDL 516
Query: 229 VEGK-PNGI 236
++G+ P GI
Sbjct: 517 IDGRQPPGI 525
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E N
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTN-- 532
Query: 237 GPDGHIAF 244
P G +A
Sbjct: 533 -PPGVLAL 539
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E N
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTN-- 532
Query: 237 GPDGHIAF 244
P G +A
Sbjct: 533 -PPGVLAL 539
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E N
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTN-- 532
Query: 237 GPDGHIAF 244
P G +A
Sbjct: 533 -PPGVLAL 539
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E N
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTN-- 532
Query: 237 GPDGHIAF 244
P G +A
Sbjct: 533 -PPGVLAL 539
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E N
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTN-- 532
Query: 237 GPDGHIAF 244
P G +A
Sbjct: 533 -PPGVLAL 539
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 19/184 (10%)
Query: 67 GHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVP----KEALTVGVGTVMDAQ 122
G+I F E T +K ++L A A D + + +++ GVG +
Sbjct: 277 GNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCEVI 336
Query: 123 EV-MILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTV---- 177
V M ++ AL KA+ E + + W VS TI+ C + + + +
Sbjct: 337 SVPMDCNQAAYSRDALAKALYERLFN-WLVSKIN----TIINCTTEKGPVIGILDIYGFE 391
Query: 178 -----NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 232
+FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E K
Sbjct: 392 VFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKK 451
Query: 233 PNGI 236
P G+
Sbjct: 452 PIGL 455
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E N
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTN-- 532
Query: 237 GPDGHIAF 244
P G +A
Sbjct: 533 -PPGVLAL 539
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 19/184 (10%)
Query: 67 GHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVP----KEALTVGVGTVMDAQ 122
G+I F E T +K ++L A A D + + +++ GVG
Sbjct: 277 GNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVI 336
Query: 123 EV-MILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTV---- 177
V M ++ AL KA+ E + + W VS TI+ C + + + +
Sbjct: 337 SVPMDCNQAAYSRDALAKALYERLFN-WLVSKIN----TIINCTTEKGPVIGILDIYGFE 391
Query: 178 -----NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 232
+FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E K
Sbjct: 392 VFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKK 451
Query: 233 PNGI 236
P G+
Sbjct: 452 PIGL 455
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 49 DIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFF--DNDIKKV 106
D +E + V G+ G+I F E GS+ + LK + + LE A D D +V
Sbjct: 303 DDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRV 361
Query: 107 P---KEALTVGVGTVMDAQEVMILITGSHKAF-ALYKAV-----EEGVNHMWTVSAFQMH 157
+ LT G +V + + ++ A AL K V + VN + F+
Sbjct: 362 SLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETS 421
Query: 158 PCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 217
I + D + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+ +
Sbjct: 422 SYFIGVLDIAGFEYFEHNS--FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEV 479
Query: 218 EFSDNTLCLQLVEGKPNGI 236
+ DN C+ L+E + GI
Sbjct: 480 HYVDNQDCIDLIEARLVGI 498
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 49 DIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFF--DNDIKKV 106
D +E + V G+ G+I F E GS+ + LK + + LE A D D +V
Sbjct: 304 DDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRV 362
Query: 107 P---KEALTVGVGTVMDAQEVMILITGSHKAF-ALYKAV-----EEGVNHMWTVSAFQMH 157
+ LT G +V + + ++ A AL K V + VN + F+
Sbjct: 363 SLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETS 422
Query: 158 PCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 217
I + D + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+ +
Sbjct: 423 SYFIGVLDIAGFEYFEHNS--FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEV 480
Query: 218 EFSDNTLCLQLVEGKPNGI 236
+ DN C+ L+E + GI
Sbjct: 481 HYVDNQDCIDLIEARLVGI 499
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 49 DIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFF--DNDIKKV 106
D +E + V G+ G+I F E GS+ + LK + + LE A D D +V
Sbjct: 330 DDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRV 388
Query: 107 P---KEALTVGVGTVMDAQEVMILITGSHKAF-ALYKAV-----EEGVNHMWTVSAFQMH 157
+ LT G +V + + ++ A AL K V + VN + F+
Sbjct: 389 SLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETS 448
Query: 158 PCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 217
I + D + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+ +
Sbjct: 449 SYFIGVLDIAGFEYFEHNS--FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEV 506
Query: 218 EFSDNTLCLQLVEGKPNGI 236
+ DN C+ L+E + GI
Sbjct: 507 HYVDNQDCIDLIEARLVGI 525
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 49 DIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFF--DNDIKKV 106
D +E + V G+ G+I F E GS+ + LK + + LE A D D +V
Sbjct: 303 DDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRV 361
Query: 107 P---KEALTVGVGTVMDAQEVMILITGSHKAF-ALYKAV-----EEGVNHMWTVSAFQMH 157
+ LT G +V + + ++ A AL K V + VN + F+
Sbjct: 362 SLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETS 421
Query: 158 PCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 217
I + D + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+ +
Sbjct: 422 SYFIGVLDIAGFEYFEHNS--FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEV 479
Query: 218 EFSDNTLCLQLVEGKPNGI 236
+ DN C+ L+E + GI
Sbjct: 480 HYVDNQDCIDLIEARLVGI 498
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 49 DIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFF--DNDIKKV 106
D +E + V G+ G+I F E GS+ + LK + + LE A D D +V
Sbjct: 329 DDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRV 387
Query: 107 P---KEALTVGVGTVMDAQEVMILITGSHKAF-ALYKAV-----EEGVNHMWTVSAFQMH 157
+ LT G +V + + ++ A AL K V + VN + F+
Sbjct: 388 SLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETS 447
Query: 158 PCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 217
I + D + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+ +
Sbjct: 448 SYFIGVLDIAGFEYFEHNS--FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEV 505
Query: 218 EFSDNTLCLQLVEGKPNGI 236
+ DN C+ L+E + GI
Sbjct: 506 HYVDNQDCIDLIEARLVGI 524
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 49 DIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFF--DNDIKKV 106
D +E + V G+ G+I F E GS+ + LK + + LE A D D +V
Sbjct: 329 DDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRV 387
Query: 107 P---KEALTVGVGTVMDAQEVMILITGSHKAF-ALYKAV-----EEGVNHMWTVSAFQMH 157
+ LT G +V + + ++ A AL K V + VN + F+
Sbjct: 388 SLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETS 447
Query: 158 PCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 217
I + D + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+ +
Sbjct: 448 SYFIGVLDIAGFEYFEHNS--FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEV 505
Query: 218 EFSDNTLCLQLVEGKPNGI 236
+ DN C+ L+E + GI
Sbjct: 506 HYVDNQDCIDLIEARLVGI 524
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 49 DIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFF--DNDIKKV 106
D +E + V G+ G+I F E GS+ + LK + + LE A D D +V
Sbjct: 329 DDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRV 387
Query: 107 P---KEALTVGVGTVMDAQEVMILITGSHKAF-ALYKAV-----EEGVNHMWTVSAFQMH 157
+ LT G +V + + ++ A AL K V + VN + F+
Sbjct: 388 SLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETS 447
Query: 158 PCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 217
I + D + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+ +
Sbjct: 448 SYFIGVLDIAGFEYFEHNS--FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEV 505
Query: 218 EFSDNTLCLQLVEGKPNGI 236
+ DN C+ L+E + GI
Sbjct: 506 HYVDNQDCIDLIEARLVGI 524
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 49 DIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFF--DNDIKKV 106
D +E + V G+ G+I F E GS+ + LK + + LE A D D +V
Sbjct: 339 DDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRV 397
Query: 107 P---KEALTVGVGTVMDAQEVMILITGSHKAF-ALYKAV-----EEGVNHMWTVSAFQMH 157
+ LT G +V + + ++ A AL K V + VN + F+
Sbjct: 398 SLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETS 457
Query: 158 PCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 217
I + D + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+ +
Sbjct: 458 SYFIGVLDIAGFEYFEHNS--FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEV 515
Query: 218 EFSDNTLCLQLVEGKPNGI 236
+ DN C+ L+E + GI
Sbjct: 516 HYVDNQDCIDLIEARLVGI 534
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 49 DIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFF--DNDIKKV 106
D +E + V G+ G+I F E GS+ + LK + + LE A D D +V
Sbjct: 326 DDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRV 384
Query: 107 P---KEALTVGVGTVMDAQEVMILITGSHKAF-ALYKAV-----EEGVNHMWTVSAFQMH 157
+ LT G +V + + ++ A AL K V + VN + F+
Sbjct: 385 SLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETS 444
Query: 158 PCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 217
I + D + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+ +
Sbjct: 445 SYFIGVLDIAGFEYFEHNS--FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEV 502
Query: 218 EFSDNTLCLQLVEGKPNGI 236
+ DN C+ L+E + GI
Sbjct: 503 HYVDNQDCIDLIEARLVGI 521
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 49 DIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFF--DNDIKKV 106
D +E + V G+ G+I F E GS+ + LK + + LE A D D +V
Sbjct: 327 DDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRV 385
Query: 107 P---KEALTVGVGTVMDAQEVMILITGSHKAF-ALYKAV-----EEGVNHMWTVSAFQMH 157
+ LT G +V + + ++ A AL K V + VN + F+
Sbjct: 386 SLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETS 445
Query: 158 PCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 217
I + D + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+ +
Sbjct: 446 SYFIGVLDIAGFEYFEHNS--FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEV 503
Query: 218 EFSDNTLCLQLVEGKPNGI 236
+ DN C+ L+E + GI
Sbjct: 504 HYVDNQDCIDLIEARLVGI 522
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 49 DIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFF--DNDIKKV 106
D +E + V G+ G+I F E GS+ + LK + + LE A D D +V
Sbjct: 339 DDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRV 397
Query: 107 P---KEALTVGVGTVMDAQEVMILITGSHKAF-ALYKAV-----EEGVNHMWTVSAFQMH 157
+ LT G +V + + ++ A AL K V + VN + F+
Sbjct: 398 SLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETS 457
Query: 158 PCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 217
I + D + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+ +
Sbjct: 458 SYFIGVLDIAGFEYFEHNS--FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEV 515
Query: 218 EFSDNTLCLQLVEGKPNGI 236
+ DN C+ L+E + GI
Sbjct: 516 HYVDNQDCIDLIEARLVGI 534
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 49 DIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFF--DNDIKKV 106
D +E + V G+ G+I F E GS+ + LK + + LE A D D +V
Sbjct: 330 DDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRV 388
Query: 107 P---KEALTVGVGTVMDAQEVMILITGSHKAF-ALYKAV-----EEGVNHMWTVSAFQMH 157
+ LT G +V + + ++ A AL K V + VN + F+
Sbjct: 389 SLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETS 448
Query: 158 PCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 217
I + D + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+ +
Sbjct: 449 SYFIGVLDIAGFEYFEHNS--FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEV 506
Query: 218 EFSDNTLCLQLVEGKPNGI 236
+ DN C+ L+E + GI
Sbjct: 507 HYVDNQDCIDLIEARLVGI 525
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
+FEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E N
Sbjct: 444 SFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPAN-- 501
Query: 237 GPDGHIAF 244
P G +A
Sbjct: 502 -PPGLLAL 508
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154)
From Thermotoga Maritima At 1.70a Resolution
Length = 232
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 33 NYFVLGLPTE--CVQYEKDIKEAGG-IHLFVGGIGPDGHIA 70
+Y LP E C +YE++I+ A L + G+GPDGH+A
Sbjct: 112 HYVDTSLPIEKACEKYEREIRSATDQFDLAILGMGPDGHVA 152
>pdb|3E7F|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid
pdb|3E7F|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid
Length = 265
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 48 KDIKEAGG----IHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDI 103
K + EAG + + G+G DGH A PGS T K + F ++
Sbjct: 140 KSVGEAGPKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKVVVSVG-------FPSET 192
Query: 104 KKVPKEALTVGVGTVMDAQEVMILITGSHKAFAL 137
K +T+ T+M A+ V++L TG+ K + +
Sbjct: 193 MKPKVWRVTLSPATIMQARNVIVLATGAEKKWVV 226
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G DGH A PGS T K + F ++ K +T+ T+M A
Sbjct: 158 GLGSDGHTASIFPGSQAEKETDGKVVVSVG-------FPSETMKPKVWRVTLSPATIMQA 210
Query: 295 QEVMILITGSHKAFAL 310
+ V++L TG+ K + +
Sbjct: 211 RNVIVLATGAEKKWVV 226
>pdb|2J0E|A Chain A, Three Dimensional Structure And Catalytic Mechanism Of 6-
Phosphogluconolactonase From Trypanosoma Brucei
pdb|2J0E|B Chain B, Three Dimensional Structure And Catalytic Mechanism Of 6-
Phosphogluconolactonase From Trypanosoma Brucei
pdb|3EB9|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
pdb|3EB9|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
Length = 266
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 48 KDIKEAGG----IHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDI 103
K + EAG + + G+G DGH A PGS T K + F ++
Sbjct: 141 KSVGEAGPKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKVVVSVG-------FPSET 193
Query: 104 KKVPKEALTVGVGTVMDAQEVMILITGSHKAFAL 137
K +T+ T+M A+ V++L TG+ K + +
Sbjct: 194 MKPKVWRVTLSPATIMQARNVIVLATGAEKKWVV 227
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G DGH A PGS T K + F ++ K +T+ T+M A
Sbjct: 159 GLGSDGHTASIFPGSQAEKETDGKVVVSVG-------FPSETMKPKVWRVTLSPATIMQA 211
Query: 295 QEVMILITGSHKAFAL 310
+ V++L TG+ K + +
Sbjct: 212 RNVIVLATGAEKKWVV 227
>pdb|1PBT|A Chain A, The Crystal Structure Of Tm1154, Oxidoreductase, SolDEVB
Family From Thermotoga Maritima
Length = 244
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 33 NYFVLGLPTE--CVQYEKDIKEAGG-IHLFVGGIGPDGHIA 70
+Y LP E C +YE++I+ A L + G GPDGH+A
Sbjct: 122 HYVDTSLPIEKACEKYEREIRSATDQFDLAILGXGPDGHVA 162
>pdb|1AHA|A Chain A, The N-Glycosidase Mechanism Of Ribosome-Inactivating
Proteins Implied By Crystal Structures Of
Alpha-Momorcharin
pdb|1AHB|A Chain A, The N-Glycosidase Mechanism Of Ribosome-Inactivating
Proteins Implied By Crystal Structures Of
Alpha-Momorcharin
pdb|1AHC|A Chain A, The N-Glycosidase Mechanism Of Ribosome-Inactivating
Proteins Implied By Crystal Structures Of
Alpha-Momorcharin
Length = 246
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 183 CINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGIGPDGHI 242
+ Y + Y+FN+ + + ++ R + +S N LQ+ GKP P G
Sbjct: 71 IMGYLADTTSYFFNEPAAELASQYVFRDARRKITLPYSGNYERLQIAAGKPREKIPIGLP 130
Query: 243 AFNEPGSSL------ASRTRLKTLAQETLEANARF 271
A + S+L A+ L L Q T EA ARF
Sbjct: 131 ALDSAISTLLHYDSTAAAGALLVLIQTTAEA-ARF 164
>pdb|1MOM|A Chain A, Crystal Structure Of Momordin, A Type I Ribosome
Inactivating Protein From The Seeds Of Momordica
Charantia
Length = 246
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 183 CINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGIGPDGHI 242
+ Y + Y+FN+ + + ++ R + +S N LQ+ GKP P G
Sbjct: 71 IMGYLADTTSYFFNEPAAELASQYVFRDARRKITLPYSGNYERLQIAAGKPREKIPIGLP 130
Query: 243 AFNEPGSSL------ASRTRLKTLAQETLEANARF 271
A + S+L A+ L L Q T EA ARF
Sbjct: 131 ALDSAISTLLHYDSTAAAGALLVLIQTTAEA-ARF 164
>pdb|2V8T|A Chain A, Crystal Structure Of Mn Catalase From Thermus Thermophilus
Complexed With Chloride
pdb|2V8T|B Chain B, Crystal Structure Of Mn Catalase From Thermus Thermophilus
Complexed With Chloride
pdb|2V8U|A Chain A, Atomic Resolution Structure Of Mn Catalase From Thermus
Thermophilus
pdb|2V8U|B Chain B, Atomic Resolution Structure Of Mn Catalase From Thermus
Thermophilus
Length = 302
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 184 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGIGP 238
I A +++ F+++++++ E+Y G+ W+ D T + +V+G P G GP
Sbjct: 218 IPEAKKYMDLGFHRNLYRFSPEDYRDLGLIWKGASPEDGTEVV-VVDGPPTG-GP 270
>pdb|2CWL|A Chain A, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
From Thermus Thermophilus Hb8
pdb|2CWL|B Chain B, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
From Thermus Thermophilus Hb8
Length = 302
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 184 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGIGP 238
I A +++ F+++++++ E+Y G+ W+ D T + +V+G P G GP
Sbjct: 218 IPEAKKYMDLGFHRNLYRFSPEDYRDLGLIWKGASPEDGTEVV-VVDGPPTG-GP 270
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 185 NYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGIGPDGHIAF 244
NYA E +++ ++ + ++ + + + WR E + L PN + PDG A
Sbjct: 77 NYAKEGAPFWWGRYHYFFKNDGLQNQNVLWRQQEGKPAEVFLD-----PNTLSPDGTTAL 131
Query: 245 NE 246
++
Sbjct: 132 DQ 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,638,129
Number of Sequences: 62578
Number of extensions: 432779
Number of successful extensions: 1158
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 91
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)