RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2118
(357 letters)
>gnl|CDD|140308 PTZ00285, PTZ00285, glucosamine-6-phosphate isomerase; Provisional.
Length = 253
Score = 231 bits (592), Expect = 5e-75
Identities = 85/136 (62%), Positives = 105/136 (77%)
Query: 42 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDN 101
EC +YE+ I+ GGI LF+ GIG DGHIAFNEPGSSL SRTR+K+L QET++ANARFF N
Sbjct: 117 ECRRYEEKIRAVGGIDLFLAGIGTDGHIAFNEPGSSLDSRTRVKSLNQETIDANARFFGN 176
Query: 102 DIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTI 161
DI KVP ALTVG+ T+M+A+EV++L TG+ KA A+ + VE GV HM SA QMHP +
Sbjct: 177 DISKVPTMALTVGIRTIMEAREVLLLATGASKAIAVARCVEGGVTHMCPASALQMHPAAV 236
Query: 162 MICDEDATQELRVKTV 177
+ DEDAT EL+VKT
Sbjct: 237 LCLDEDATLELKVKTT 252
Score = 204 bits (522), Expect = 1e-64
Identities = 76/117 (64%), Positives = 92/117 (78%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
GIG DGHIAFNEPGSSL SRTR+K+L QET++ANARFF NDI KVP ALTVG+ T+M+A
Sbjct: 137 GIGTDGHIAFNEPGSSLDSRTRVKSLNQETIDANARFFGNDISKVPTMALTVGIRTIMEA 196
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVK 351
+EV++L TG+ KA A+ + VE GV HM SA QMHP ++ DEDAT EL+VKT K
Sbjct: 197 REVLLLATGASKAIAVARCVEGGVTHMCPASALQMHPAAVLCLDEDATLELKVKTTK 253
Score = 52.1 bits (125), Expect = 1e-07
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
MR++I +D VA++++ Y++K+I DFKP D FVLGLPT
Sbjct: 1 MRIVISEDADAVADYTSNYIIKRINDFKPTSDRPFVLGLPT 41
>gnl|CDD|179028 PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional.
Length = 261
Score = 229 bits (586), Expect = 6e-74
Identities = 85/145 (58%), Positives = 107/145 (73%), Gaps = 1/145 (0%)
Query: 39 LPTECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARF 98
EC +YE+ IK AGGI L + GIG +GHIAFNEPGSS ASRTR+KTL ++T AN+RF
Sbjct: 114 PEAECRRYEEKIKSAGGIDLQILGIGENGHIAFNEPGSSFASRTRIKTLTEDTRIANSRF 173
Query: 99 FDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHP 158
FD DI++VPK ALTVGVGT++DA+E+M+L G +KA A+ AVE VNHMW S Q+HP
Sbjct: 174 FDGDIEQVPKYALTVGVGTILDAKEIMLLAPGHNKAEAVKAAVEGPVNHMWPASILQLHP 233
Query: 159 CTIMICDEDATQELRVKTVN-FEQL 182
++ DE A EL+VKTV F +L
Sbjct: 234 KATLVLDEAAASELKVKTVKYFTEL 258
Score = 205 bits (523), Expect = 2e-64
Identities = 75/120 (62%), Positives = 93/120 (77%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
GIG +GHIAFNEPGSS ASRTR+KTL ++T AN+RFFD DI++VPK ALTVGVGT++DA
Sbjct: 137 GIGENGHIAFNEPGSSFASRTRIKTLTEDTRIANSRFFDGDIEQVPKYALTVGVGTILDA 196
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFK 354
+E+M+L G +KA A+ AVE VNHMW S Q+HP ++ DE A EL+VKTVKYF
Sbjct: 197 KEIMLLAPGHNKAEAVKAAVEGPVNHMWPASILQLHPKATLVLDEAAASELKVKTVKYFT 256
Score = 51.0 bits (123), Expect = 2e-07
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
MRLIIL V +W+AR++ +I F P + FVLGL T
Sbjct: 1 MRLIILKTAEEVGKWAARHIANRINAFLPTKERPFVLGLAT 41
>gnl|CDD|129593 TIGR00502, nagB, glucosamine-6-phosphate isomerase. The set of
proteins recognized by This model includes a closely
related pair from Bacillus subtilis, one of which is
uncharacterized but included as a member of the
orthologous set [Central intermediary metabolism, Amino
sugars].
Length = 259
Score = 224 bits (573), Expect = 4e-72
Identities = 94/154 (61%), Positives = 124/154 (80%), Gaps = 5/154 (3%)
Query: 31 PDNYFVLG-----LPTECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLK 85
P+N +L L EC +YE+ I+ GGI LF+GGIGPDGHIAFNEPGSSL SRTR+K
Sbjct: 101 PENINILNGNAPDLEAECRRYEEKIRSYGGIDLFMGGIGPDGHIAFNEPGSSLTSRTRIK 160
Query: 86 TLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGV 145
TL ++T++AN+RFF+ D+ +VPK ALTVG+GT++D++EV+IL++G KA AL KAVE GV
Sbjct: 161 TLTEDTIQANSRFFEGDVNQVPKYALTVGIGTILDSKEVLILVSGHQKALALQKAVEGGV 220
Query: 146 NHMWTVSAFQMHPCTIMICDEDATQELRVKTVNF 179
NHMWT+SA Q+H I++CDE+ATQEL+VKTV +
Sbjct: 221 NHMWTISALQLHKHAIVVCDENATQELKVKTVEY 254
Score = 197 bits (503), Expect = 1e-61
Identities = 81/119 (68%), Positives = 105/119 (88%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
GIGPDGHIAFNEPGSSL SRTR+KTL ++T++AN+RFF+ D+ +VPK ALTVG+GT++D+
Sbjct: 137 GIGPDGHIAFNEPGSSLTSRTRIKTLTEDTIQANSRFFEGDVNQVPKYALTVGIGTILDS 196
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYF 353
+EV+IL++G KA AL KAVE GVNHMWT+SA Q+H I++CDE+ATQEL+VKTV+YF
Sbjct: 197 KEVLILVSGHQKALALQKAVEGGVNHMWTISALQLHKHAIVVCDENATQELKVKTVEYF 255
Score = 49.8 bits (119), Expect = 6e-07
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
MRLIIL +++W+AR++ +I +FKP FVLGLPT
Sbjct: 1 MRLIILQTYEELSKWAARHIANRINEFKPTAARPFVLGLPT 41
>gnl|CDD|238693 cd01399, GlcN6P_deaminase, GlcN6P_deaminase:
Glucosamine-6-phosphate (GlcN6P) deaminase subfamily;
GlcN6P deaminase catalyzes the reversible conversion of
GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium.
The reaction is an aldo-keto isomerization coupled with
an amination or deamination. It is the last step of the
metabolic pathway of N-acetyl-D-glucosamine-6-phosphate
(GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that
is allosterically activated by GlcNAc6P.
Length = 232
Score = 209 bits (534), Expect = 2e-66
Identities = 75/152 (49%), Positives = 97/152 (63%), Gaps = 8/152 (5%)
Query: 26 DFKPGPDNYFVL-----GLPTECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLAS 80
D KP +N + L EC +YE I EAGGI L + GIG +GHI FNEPGSSL S
Sbjct: 84 DIKP--ENIHIPDGNAADLEAECRRYEALIAEAGGIDLQLLGIGENGHIGFNEPGSSLDS 141
Query: 81 RTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKA 140
RTR+ TL + T +ANARFFD D + VP +A+T+G+GT+M A+E+++L TG KA A+ KA
Sbjct: 142 RTRVVTLDESTRQANARFFDGD-EDVPTQAITMGIGTIMKAKEILLLATGEGKAEAVKKA 200
Query: 141 VEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 172
+E V S Q+HP +I DE A EL
Sbjct: 201 LEGPVTEECPASILQLHPNVTVILDEAAASEL 232
Score = 180 bits (460), Expect = 2e-55
Identities = 59/111 (53%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
GIG +GHI FNEPGSSL SRTR+ TL + T +ANARFFD D + VP +A+T+G+GT+M A
Sbjct: 123 GIGENGHIGFNEPGSSLDSRTRVVTLDESTRQANARFFDGD-EDVPTQAITMGIGTIMKA 181
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 345
+E+++L TG KA A+ KA+E V S Q+HP +I DE A EL
Sbjct: 182 KEILLLATGEGKAEAVKKALEGPVTEECPASILQLHPNVTVILDEAAASEL 232
Score = 29.8 bits (68), Expect = 1.7
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 12 VAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
++E +A + + I + P VLGL T
Sbjct: 3 MSEAAAELIAELIREKPP-----AVLGLAT 27
>gnl|CDD|223440 COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate
isomerase/deaminase [Carbohydrate transport and
metabolism].
Length = 238
Score = 140 bits (356), Expect = 5e-40
Identities = 55/131 (41%), Positives = 77/131 (58%), Gaps = 9/131 (6%)
Query: 45 QYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSS-LASRTRLKTLAQETLEANARFFDNDI 103
+YE + AGG L + G+G DGHIA PG+ L S T T EAN+R F D
Sbjct: 116 RYEAKLPSAGGFDLILLGMGEDGHIASLFPGTPALDSAT--------TEEANSRVFVGDS 167
Query: 104 KKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMI 163
KVPKE +T+ + T++DA+EV++L+TG KA AL +A+E V ++ S Q+HP
Sbjct: 168 PKVPKERITLTLPTILDAKEVLLLVTGEEKADALKQALEGPVTELYPASILQLHPNVTWF 227
Query: 164 CDEDATQELRV 174
DE+A L+V
Sbjct: 228 LDEEAASLLKV 238
Score = 123 bits (312), Expect = 1e-33
Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 38/201 (18%)
Query: 159 CTIMICDEDATQELRVKTVNFEQLCINYANEHL--------QYYFNQHVFQYEQE---EY 207
TI DE RV + + +L ++ N + E Y
Sbjct: 64 VTIFNLDE------RVVPPDDPESNYGLMRRNLFDHIDIPAEFIHNGDASDPDAECAARY 117
Query: 208 NKEGIRWRHIEFSDNTLCLQLVEGKPNGIGPDGHIAFNEPGSS-LASRTRLKTLAQETLE 266
+ + S L L+ G+G DGHIA PG+ L S T T E
Sbjct: 118 EAK-LP------SAGGFDLILL-----GMGEDGHIASLFPGTPALDSAT--------TEE 157
Query: 267 ANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSA 326
AN+R F D KVPKE +T+ + T++DA+EV++L+TG KA AL +A+E V ++ S
Sbjct: 158 ANSRVFVGDSPKVPKERITLTLPTILDAKEVLLLVTGEEKADALKQALEGPVTELYPASI 217
Query: 327 FQMHPCTIMICDEDATQELRV 347
Q+HP DE+A L+V
Sbjct: 218 LQLHPNVTWFLDEEAASLLKV 238
Score = 36.5 bits (85), Expect = 0.011
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
M+LII +D +A+ +A + K+ K VL L
Sbjct: 1 MKLIIFEDAEELAKAAAEIIADKLQAAKAE-RGRAVLALSG 40
>gnl|CDD|235005 PRK02122, PRK02122, glucosamine-6-phosphate deaminase-like protein;
Validated.
Length = 652
Score = 125 bits (315), Expect = 2e-31
Identities = 58/135 (42%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 43 CVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDND 102
C YE+ I+ AGGI + GIG GHI FNEPGS SRTRL TL T A F
Sbjct: 146 CRDYEEKIEAAGGIDFQLLGIGRTGHIGFNEPGSGRNSRTRLVTLDHITRRDAASDF-FG 204
Query: 103 IKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIM 162
+ VP++A+T+GVGT++ A+ +++L G HKA + +AVE ++ S Q HP
Sbjct: 205 EENVPRKAITMGVGTILKARRIVLLAWGEHKAPIIKRAVEGEISDEVPASYLQEHPNATF 264
Query: 163 ICDEDATQEL-RVKT 176
+ D A EL R+KT
Sbjct: 265 VLDLAAASELTRIKT 279
Score = 105 bits (263), Expect = 9e-25
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
GIG GHI FNEPGS SRTRL TL T A F + VP++A+T+GVGT++ A
Sbjct: 165 GIGRTGHIGFNEPGSGRNSRTRLVTLDHITRRDAASDF-FGEENVPRKAITMGVGTILKA 223
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL-RVKT 349
+ +++L G HKA + +AVE ++ S Q HP + D A EL R+KT
Sbjct: 224 RRIVLLAWGEHKAPIIKRAVEGEISDEVPASYLQEHPNATFVLDLAAASELTRIKT 279
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 114 bits (288), Expect = 4e-28
Identities = 39/59 (66%), Positives = 47/59 (79%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
+FEQLCINYANE LQYYFNQH+F+ EQEEY EGI W +IE++DN C+QL KP G+
Sbjct: 394 SFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGL 452
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 114 bits (289), Expect = 4e-28
Identities = 39/58 (67%), Positives = 45/58 (77%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F DN C+ L+E KP GI
Sbjct: 387 FEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGI 444
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 107 bits (270), Expect = 1e-25
Identities = 39/62 (62%), Positives = 44/62 (70%)
Query: 175 KTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 234
KT +FEQ CIN NE LQ +FNQHVF+ EQEEY KE I W +IEF DN L L+E KP
Sbjct: 381 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPG 440
Query: 235 GI 236
GI
Sbjct: 441 GI 442
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 107 bits (270), Expect = 1e-25
Identities = 37/58 (63%), Positives = 45/58 (77%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F+DN + L+E KP G+
Sbjct: 380 FEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGL 437
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 102 bits (256), Expect = 6e-24
Identities = 36/58 (62%), Positives = 43/58 (74%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
FEQLCIN+ANE+LQ +F QH+F+ EQEEYN E I W+HIEF DN L L+ KP I
Sbjct: 380 FEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNI 437
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 101 bits (253), Expect = 2e-23
Identities = 36/54 (66%), Positives = 40/54 (74%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 232
FEQ CINYANE LQ FNQHVF+ EQEEY KEGI W I+F DN C+ L+E K
Sbjct: 386 FEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK 439
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 100 bits (252), Expect = 3e-23
Identities = 36/59 (61%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
FEQLCINYANE LQ +FN H+F+ EQEEY +EGI W I++ DN C+ L+E KP GI
Sbjct: 381 FEQLCINYANEKLQQFFNHHMFKLEQEEYVREGIAWTFIDYGLDNQACIDLIEKKPPGI 439
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 96.7 bits (241), Expect = 9e-22
Identities = 37/59 (62%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGI 236
FEQLCINY NE LQ +FNQH+F+ EQEEY KEGI W I++ DN C+ L+E K P GI
Sbjct: 446 FEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGI 504
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 92.7 bits (230), Expect = 1e-20
Identities = 35/59 (59%), Positives = 43/59 (72%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
+FEQLCINYANE+LQY FN+ VFQ EQEEY +E + W I F+DN + L+ KP GI
Sbjct: 378 SFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGI 436
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 91.8 bits (228), Expect = 3e-20
Identities = 35/58 (60%), Positives = 43/58 (74%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
FEQ CINYANE LQ +FN+H+F+ EQEEY ++GI W +EF DN CL L E KP G+
Sbjct: 383 FEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGL 440
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 87.3 bits (217), Expect = 9e-19
Identities = 33/59 (55%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
FEQLCINY NE LQ +FN H+F EQEEY +EGI W I+F D + L+E P GI
Sbjct: 392 FEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGI 450
>gnl|CDD|183470 PRK12358, PRK12358, putative 6-phosphogluconolactonase;
Provisional.
Length = 239
Score = 79.0 bits (195), Expect = 5e-17
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 44 VQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPG-SSLASRTRLKTLAQETLEANARFFDN- 101
++++ + GG+ L V G+G DGH N PG + T + E ++ A
Sbjct: 107 REHDQKLARDGGLDLVVLGLGADGHFCGNLPGTTHFHDETVEVPIQGEMVDIVAHGELGG 166
Query: 102 DIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTI 161
D VP +T+G ++M A+ +++++ G KA L K ++ V S Q+HP
Sbjct: 167 DFSLVPDSYVTMGPKSIMAAKNLLLIVNGKGKAQILKKVLQGPVTEDVPASILQLHPNLT 226
Query: 162 MICDEDATQEL 172
+I DE A EL
Sbjct: 227 VILDEAAAAEL 237
Score = 65.5 bits (160), Expect = 3e-12
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 235 GIGPDGHIAFNEPG-SSLASRTRLKTLAQETLEANARFFDN-DIKKVPKEALTVGVGTVM 292
G+G DGH N PG + T + E ++ A D VP +T+G ++M
Sbjct: 125 GLGADGHFCGNLPGTTHFHDETVEVPIQGEMVDIVAHGELGGDFSLVPDSYVTMGPKSIM 184
Query: 293 DAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 345
A+ +++++ G KA L K ++ V S Q+HP +I DE A EL
Sbjct: 185 AAKNLLLIVNGKGKAQILKKVLQGPVTEDVPASILQLHPNLTVILDEAAAAEL 237
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 82.2 bits (203), Expect = 5e-17
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
+FEQLCIN ANE +QYYFNQH+F +EQ+EY EG+ R +E+ DN L + KP G+
Sbjct: 390 SFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGL 448
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 81.1 bits (201), Expect = 1e-16
Identities = 31/59 (52%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGI 236
FEQ CINY NE LQ F + + EQEEY +EGI+W IE+ +N + L+EGK P GI
Sbjct: 384 FEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGI 442
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 79.4 bits (196), Expect = 4e-16
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
FEQ CINY NE LQ +FN+ + + EQE Y +EG+ + + DN C+ L+E K NGI
Sbjct: 415 FEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGI 472
>gnl|CDD|182064 PRK09762, PRK09762, galactosamine-6-phosphate isomerase;
Provisional.
Length = 232
Score = 69.1 bits (169), Expect = 1e-13
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 27 FKPGPDNYFVLGLPTECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKT 86
F+ N TEC + I GG+ L V G+G +GH+ NEPG SL +
Sbjct: 102 FRSEEIN------ETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQ 155
Query: 87 LAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVN 146
L T + + +T+G+ +++A+EV++L+TG K A + + V+
Sbjct: 156 LDARTQQHEMLKTAG---RPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVS 212
Query: 147 HMWTVSAFQMHPCTI-MICD 165
S +H I +I
Sbjct: 213 TAIPASFLWLHSNFICLIDR 232
Score = 56.0 bits (135), Expect = 4e-09
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G +GH+ NEPG SL + L T + + +T+G+ +++A
Sbjct: 131 GLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAG---RPVTRGITLGLKDILNA 187
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTI-MICD 338
+EV++L+TG K A + + V+ S +H I +I
Sbjct: 188 REVLLLVTGEGKQDATERFLTAKVSTAIPASFLWLHSNFICLIDR 232
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate
Isomerase family; includes type A ribose 5-phosphate
isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P)
deaminase, and 6-phosphogluconolactonase (6PGL). RPI
catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to
D-fructose-6-phosphate (Fru6P) and ammonium, the last
step of the metabolic pathway of
N-acetyl-D-glucosamine-6-phosphate. 6PGL converts
6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the
second step of the oxidative phase of the pentose
phosphate pathway.
Length = 169
Score = 58.1 bits (140), Expect = 3e-10
Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 21/171 (12%)
Query: 13 AEWSARYVLKKITDFKPGPDNYFVLGLP---TECVQYEK--DIKEAGGIHLFVG-----G 62
A+ + +++ K + V+GL T Y+ + + G I VG
Sbjct: 1 AKEALKFIEDKXEKL-LEEKDDMVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTDER 59
Query: 63 IGPDGHIAFNEPGSSL---------ASRTRLKTLAQETLEANARFFDNDIKKVPKEALTV 113
P N + L AS + +A ++ + +V L V
Sbjct: 60 YVPLDSDQSNFRQAKLLAFEHDIIPASNVHYVDTSLPIEKACEKYEREILDQVDAIDLAV 119
Query: 114 GVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMIC 164
G A V++L+ G K L + E GV + + I+I
Sbjct: 120 D-GAGYRAGTVIVLVDGRKKVDYLCQNTEPGVIENGIFADIRGKEKDIVIV 169
Score = 53.1 bits (127), Expect = 2e-08
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 252 ASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALY 311
AS + +A ++ + +V L V G A V++L+ G K L
Sbjct: 85 ASNVHYVDTSLPIEKACEKYEREILDQVDAIDLAVD-GAGYRAGTVIVLVDGRKKVDYLC 143
Query: 312 KAVEEGVNHMWTVSAFQMHPCTIMIC 337
+ E GV + + I+I
Sbjct: 144 QNTEPGVIENGIFADIRGKEKDIVIV 169
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 51.2 bits (123), Expect = 5e-07
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 180 EQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
EQL IN NE LQ F VF+ E + Y EGI +E++ N + L+ GK +
Sbjct: 481 EQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSV 537
>gnl|CDD|238694 cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily;
6PGL catalyzes the second step of the oxidative phase of
the pentose phosphate pathway, the hydrolyzation of
6-phosphoglucono-1,5-lactone (delta form) to
6-phosphogluconate. 6PGL is thought to guard against the
accumulation of the delta form of the lactone, which may
be toxic through its reaction with endogenous cellular
nucleophiles.
Length = 219
Score = 44.1 bits (105), Expect = 3e-05
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 18/131 (13%)
Query: 37 LGLPTECVQYEKDIKEAGG----IHLFVGGIGPDGHIA--FNEPGSSLASRTRLKTLAQE 90
LG YEK+++ G L + G+GPDGH A F PG + +
Sbjct: 97 LGPEDAAAAYEKELRALFGGVPPFDLVLLGMGPDGHTASLF--PGHPALLEETDRLVV-- 152
Query: 91 TLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWT 150
D K P E +T+ + + +A+ V+ L+TG+ KA AL +A+
Sbjct: 153 --------AVTDSPKPPPERITLTLPVLNNARRVVFLVTGAEKAEALKRALAGPDPEELP 204
Query: 151 VSAFQMHPCTI 161
+ P +
Sbjct: 205 AARVLPRPGEV 215
Score = 41.0 bits (97), Expect = 3e-04
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 235 GIGPDGHIA--FNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVM 292
G+GPDGH A F PG + + D K P E +T+ + +
Sbjct: 126 GMGPDGHTASLF--PGHPALLEETDRLVV----------AVTDSPKPPPERITLTLPVLN 173
Query: 293 DAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTI 334
+A+ V+ L+TG+ KA AL +A+ + P +
Sbjct: 174 NARRVVFLVTGAEKAEALKRALAGPDPEELPAARVLPRPGEV 215
>gnl|CDD|216349 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate
isomerases/6-phosphogluconolactonase.
Length = 191
Score = 43.7 bits (104), Expect = 3e-05
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 16/135 (11%)
Query: 14 EWS-ARYVLKKITDFKPGPDNYFVLGLPTECVQ-YEKDIKEAGGIH----LFVGGIGPDG 67
S + + + D P P P + YE++++ G L + G+G DG
Sbjct: 67 PDSNYKLAREALLDNVPIPAANVHPIPPEAAAERYERELRGLFGPEPPFDLVLLGMGEDG 126
Query: 68 HIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMIL 127
H A PGS + + D K P E +T+ + + A+ V L
Sbjct: 127 HTASLFPGSPALLEELDRPVVAV----------PDSPKPPPERITLTLPALNSARRVAFL 176
Query: 128 ITGSHKAFALYKAVE 142
+TG+ KA AL A++
Sbjct: 177 VTGAEKAEALRAALD 191
Score = 38.3 bits (90), Expect = 0.003
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G DGH A PGS + + D K P E +T+ + + A
Sbjct: 121 GMGEDGHTASLFPGSPALLEELDRPVVAV----------PDSPKPPPERITLTLPALNSA 170
Query: 295 QEVMILITGSHKAFALYKAVE 315
+ V L+TG+ KA AL A++
Sbjct: 171 RRVAFLVTGAEKAEALRAALD 191
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 41.8 bits (98), Expect = 5e-04
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 150 TVSAFQMHPCTIMICDEDATQELR----VKTVNFEQLCINYANEHLQYYFNQHVFQYEQE 205
++S+ +IM+ D Q + FE+LC NY E LQ F+ F E
Sbjct: 364 SISSSHHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLE 423
Query: 206 EYNKEGIRWRHIEFSD 221
Y +EG+ +EF
Sbjct: 424 RYAEEGVE---VEFDL 436
>gnl|CDD|233308 TIGR01198, pgl, 6-phosphogluconolactonase. This enzyme of the
pentose phosphate pathway is often found as a part of a
multifunctional protein with [Energy metabolism, Pentose
phosphate pathway].
Length = 233
Score = 37.3 bits (87), Expect = 0.007
Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 26/163 (15%)
Query: 18 RYVLKKITDFKPGPDNYFVLGLPTE---CVQYEKDIKEA------GGIHLFVGGIGPDGH 68
+L ++ + L YE+++ A L + G+GPDGH
Sbjct: 81 EALLDRV-AIPASNIHPMPTELSDIEEAAELYEQELAAAFQPIVFPVFDLLLLGMGPDGH 139
Query: 69 IA--FNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMI 126
A F + A + + + K P E +T+ + + A++V +
Sbjct: 140 TASLFPH---TPALQETERLVT----------VLTKSPKPPHERITLTLPAINAARKVFL 186
Query: 127 LITGSHKAFALYKAVE-EGVNHMWTVSAFQMHPCTIMICDEDA 168
LI G K AL +A+ E + + T+ + D A
Sbjct: 187 LIAGEEKRNALAEALAVEAEPYPLPAAGVLHSGKTLWLLDYAA 229
Score = 35.0 bits (81), Expect = 0.039
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 16/110 (14%)
Query: 235 GIGPDGHIA--FNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVM 292
G+GPDGH A F + A + + + K P E +T+ + +
Sbjct: 133 GMGPDGHTASLFPH---TPALQETERLVT----------VLTKSPKPPHERITLTLPAIN 179
Query: 293 DAQEVMILITGSHKAFALYKAVE-EGVNHMWTVSAFQMHPCTIMICDEDA 341
A++V +LI G K AL +A+ E + + T+ + D A
Sbjct: 180 AARKVFLLIAGEEKRNALAEALAVEAEPYPLPAAGVLHSGKTLWLLDYAA 229
>gnl|CDD|166001 PLN02360, PLN02360, probable 6-phosphogluconolactonase.
Length = 268
Score = 35.6 bits (82), Expect = 0.029
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 24/112 (21%)
Query: 212 IRWRHIEFSDNTLC----LQLVEGKPNGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEA 267
++ R I SD + C L L+ G+G DGH+A P LE
Sbjct: 135 VKTRTIGVSDISDCPKFDLILL-----GMGSDGHVASLFPNHPA-------------LEE 176
Query: 268 NARF--FDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEG 317
+ F D K P E +T + + A V ++ TG KA A++ A+++
Sbjct: 177 KDDWVTFITDSPKPPPERITFTLPVINSASNVAVVATGESKANAVHLAIDDV 228
Score = 34.4 bits (79), Expect = 0.070
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 58 LFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARF--FDNDIKKVPKEALTVGV 115
L + G+G DGH+A P LE + F D K P E +T +
Sbjct: 153 LILLGMGSDGHVASLFPNHPA-------------LEEKDDWVTFITDSPKPPPERITFTL 199
Query: 116 GTVMDAQEVMILITGSHKAFALYKAVEEG 144
+ A V ++ TG KA A++ A+++
Sbjct: 200 PVINSASNVAVVATGESKANAVHLAIDDV 228
>gnl|CDD|182951 PRK11085, PRK11085, magnesium/nickel/cobalt transporter CorA;
Provisional.
Length = 316
Score = 30.1 bits (68), Expect = 1.6
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 72 NEPGSSLASRTRLKTLAQETLEANARFFDND 102
+E G SLA+R L E +EA+ARFF+++
Sbjct: 44 SELGQSLATRPEL-----EDIEASARFFEDE 69
Score = 30.1 bits (68), Expect = 1.6
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 245 NEPGSSLASRTRLKTLAQETLEANARFFDND 275
+E G SLA+R L E +EA+ARFF+++
Sbjct: 44 SELGQSLATRPEL-----EDIEASARFFEDE 69
>gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional.
Length = 451
Score = 29.3 bits (66), Expect = 3.1
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 48 KDIKEAGGIHLFVGGIGPDGHIAFNEPG 75
++I +A G+++F G I D H+ FNEPG
Sbjct: 42 REIIDADGLYVFPGMI--DVHVHFNEPG 67
>gnl|CDD|238221 cd00375, Urease_alpha, Urease alpha-subunit; Urease is a
nickel-dependent metalloenzyme that catalyzes the
hydrolysis of urea to form ammonia and carbon dioxide.
Nickel-dependent ureases are found in bacteria, fungi
and plants. Their primary role is to allow the use of
external and internally generated urea as a nitrogen
source. The enzyme consists of 3 subunits, alpha, beta
and gamma, which can be fused and present on a single
protein chain and which in turn forms multimers, mainly
trimers. The large alpha subunit is the catalytic domain
containing an active site with a bi-nickel center
complexed by a carbamylated lysine. The beta and gamma
subunits play a role in subunit association to form the
higher order trimers.
Length = 567
Score = 29.2 bits (66), Expect = 3.6
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 26 DFKPGPDNYFVLGLPTECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEP 74
D G ++G TE + E I AGGI D H+ F P
Sbjct: 102 DIMDGVTPNMIVGPSTEVIAGEGKIVTAGGI---------DTHVHFICP 141
>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional.
Length = 321
Score = 28.2 bits (63), Expect = 6.6
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 19/78 (24%)
Query: 60 VGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVM 119
V GIG GHI G +A+ TLA A FF + P EAL +G ++
Sbjct: 47 VSGIGKSGHI-----GKKIAA-----TLASTGTPA---FFVH-----PAEALHGDLG-MI 87
Query: 120 DAQEVMILITGSHKAFAL 137
++++VM+ I+ S A L
Sbjct: 88 ESRDVMLFISYSGGAKEL 105
>gnl|CDD|128842 smart00572, DZF, domain in DSRM or ZnF_C2H2 domain containing
proteins.
Length = 246
Score = 28.1 bits (63), Expect = 6.7
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 90 ETLEANARFFDNDIKKV-PKEALTVGVGTVMDAQEVMILITGSHKAFALYKAV 141
E + AR +K V EAL + T EV ILIT L
Sbjct: 36 ELVARLARKLPEQLKAVTEDEALIIVTSTKEPTMEVGILITSPLARVELLITT 88
Score = 28.1 bits (63), Expect = 6.7
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 263 ETLEANARFFDNDIKKV-PKEALTVGVGTVMDAQEVMILITGSHKAFALYKAV 314
E + AR +K V EAL + T EV ILIT L
Sbjct: 36 ELVARLARKLPEQLKAVTEDEALIIVTSTKEPTMEVGILITSPLARVELLITT 88
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,159,931
Number of extensions: 1747230
Number of successful extensions: 1431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1413
Number of HSP's successfully gapped: 64
Length of query: 357
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 259
Effective length of database: 6,590,910
Effective search space: 1707045690
Effective search space used: 1707045690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)