RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2118
(357 letters)
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI,
infectious disease, LYME DI non-hodgkin lymphomas,
neuroborreliosis; 2.20A {Borrelia burgdorferi}
Length = 289
Score = 228 bits (584), Expect = 2e-73
Identities = 91/141 (64%), Positives = 115/141 (81%)
Query: 39 LPTECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARF 98
L EC +YEK IK GGI LFVGGIGPDGHIAFNEPGSSL SRTR+KTL Q+T+ AN+RF
Sbjct: 135 LKKECEEYEKKIKSFGGIMLFVGGIGPDGHIAFNEPGSSLTSRTRIKTLTQDTIIANSRF 194
Query: 99 FDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHP 158
F+ D+ KVPK ALTVG+GT+MD+QEV+I++ G +KA AL A+E+GVNHMWT+SA Q+H
Sbjct: 195 FEGDVNKVPKNALTVGIGTIMDSQEVLIIVNGHNKARALKHAIEKGVNHMWTISALQLHK 254
Query: 159 CTIMICDEDATQELRVKTVNF 179
I++ D++AT EL+V TV +
Sbjct: 255 NAIIVSDKNATYELKVGTVEY 275
Score = 209 bits (534), Expect = 6e-66
Identities = 78/120 (65%), Positives = 101/120 (84%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
GIGPDGHIAFNEPGSSL SRTR+KTL Q+T+ AN+RFF+ D+ KVPK ALTVG+GT+MD+
Sbjct: 158 GIGPDGHIAFNEPGSSLTSRTRIKTLTQDTIIANSRFFEGDVNKVPKNALTVGIGTIMDS 217
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFK 354
QEV+I++ G +KA AL A+E+GVNHMWT+SA Q+H I++ D++AT EL+V TV+YF
Sbjct: 218 QEVLIIVNGHNKARALKHAIEKGVNHMWTISALQLHKNAIIVSDKNATYELKVGTVEYFN 277
Score = 50.1 bits (120), Expect = 4e-07
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
MRLII ++++W+A +V +KI +F P +N F+LGLPT
Sbjct: 22 MRLIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPT 62
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic
effects, aldose-ketose isomerase multiple conformers,
isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP:
c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A
1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Length = 266
Score = 226 bits (579), Expect = 5e-73
Identities = 93/154 (60%), Positives = 116/154 (75%), Gaps = 5/154 (3%)
Query: 31 PDNYFVL-----GLPTECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLK 85
+N +L + EC QYE+ I+ G IHLF+GG+G DGHIAFNEP SSLASRTR+K
Sbjct: 101 AENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIK 160
Query: 86 TLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGV 145
TL +T AN+RFFDND+ +VPK ALTVGVGT++DA+EVMIL+ GS KA AL AVE V
Sbjct: 161 TLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCV 220
Query: 146 NHMWTVSAFQMHPCTIMICDEDATQELRVKTVNF 179
NHMWT+S Q+HP IM+CDE +T EL+VKT+ +
Sbjct: 221 NHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRY 254
Score = 207 bits (529), Expect = 1e-65
Identities = 81/120 (67%), Positives = 98/120 (81%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G DGHIAFNEP SSLASRTR+KTL +T AN+RFFDND+ +VPK ALTVGVGT++DA
Sbjct: 137 GVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDA 196
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFK 354
+EVMIL+ GS KA AL AVE VNHMWT+S Q+HP IM+CDE +T EL+VKT++YF
Sbjct: 197 EEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYFN 256
Score = 52.4 bits (126), Expect = 6e-08
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
MRLI L V +W+AR+++ +I FKP D FVLGLPT
Sbjct: 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPT 41
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme,
conformational disorder, conformational differences,
hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP:
c.124.1.1
Length = 289
Score = 224 bits (574), Expect = 5e-72
Identities = 111/152 (73%), Positives = 126/152 (82%), Gaps = 5/152 (3%)
Query: 31 PDNYFVLG-----LPTECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLK 85
P+N +L L EC +E+ IK AGGI LFVGGIGPDGHIAFNEPGSSL SRTR+K
Sbjct: 101 PENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVK 160
Query: 86 TLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGV 145
TLA +T+ ANARFFD ++ KVP ALTVGVGTVMDA+EVMILITG+HKAFALYKA+EEGV
Sbjct: 161 TLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV 220
Query: 146 NHMWTVSAFQMHPCTIMICDEDATQELRVKTV 177
NHMWTVSAFQ HP T+ +CDEDAT EL+VKTV
Sbjct: 221 NHMWTVSAFQQHPRTVFVCDEDATLELKVKTV 252
Score = 205 bits (524), Expect = 2e-64
Identities = 98/120 (81%), Positives = 109/120 (90%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
GIGPDGHIAFNEPGSSL SRTR+KTLA +T+ ANARFFD ++ KVP ALTVGVGTVMDA
Sbjct: 137 GIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDA 196
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFK 354
+EVMILITG+HKAFALYKA+EEGVNHMWTVSAFQ HP T+ +CDEDAT EL+VKTVKYFK
Sbjct: 197 REVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFK 256
Score = 52.4 bits (126), Expect = 5e-08
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
M+LIIL+ S +EW+A+Y+ +I F PGP+ YF LGLPT
Sbjct: 1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPT 41
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition,
fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis}
PDB: 2bkv_A*
Length = 242
Score = 205 bits (524), Expect = 3e-65
Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 8/160 (5%)
Query: 16 SARYVLKK-ITDFKP-GPDNYFVLG-----LPTECVQYEKDIKEAGGIHLFVGGIGPDGH 68
S + + P +F+ L EC +YE+ + G + + GIG +GH
Sbjct: 79 SYHFYMNDRFFQHIDSKPSRHFIPNGNADDLEAECRRYEQLVDSLGDTDIQLLGIGRNGH 138
Query: 69 IAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILI 128
I FNEPG+S SRT + TL ++T +ANAR+F + I VPK+ALT+G+ T++ ++ +++LI
Sbjct: 139 IGFNEPGTSFKSRTHVVTLNEQTRQANARYFPS-IDSVPKKALTMGIQTILSSKRILLLI 197
Query: 129 TGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDA 168
+G KA A+ K +E ++ + SA +H ++ D +A
Sbjct: 198 SGKSKAEAVRKLLEGNISEDFPASALHLHSDVTVLIDREA 237
Score = 180 bits (458), Expect = 3e-55
Identities = 57/185 (30%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 173 RVKTVNFEQLCINYANEHLQ---YYFNQHVFQY-------------EQEEYNKEGIRWRH 216
+ TVN ++ +++ +Y N FQ+ ++ E R+
Sbjct: 60 NITTVNLDEY-AGLSSDDPNSYHFYMNDRFFQHIDSKPSRHFIPNGNADDLEAECRRYEQ 118
Query: 217 IEFSDNTLCLQLVEGKPNGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDI 276
+ S +QL+ GIG +GHI FNEPG+S SRT + TL ++T +ANAR+F + I
Sbjct: 119 LVDSLGDTDIQLL-----GIGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARYFPS-I 172
Query: 277 KKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMI 336
VPK+ALT+G+ T++ ++ +++LI+G KA A+ K +E ++ + SA +H ++
Sbjct: 173 DSVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNISEDFPASALHLHSDVTVL 232
Query: 337 CDEDA 341
D +A
Sbjct: 233 IDREA 237
Score = 40.4 bits (95), Expect = 5e-04
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
M+++ +++ +AR I + VLGL T
Sbjct: 1 MKVMECQTYEELSQIAARITADTIKEKPD-----AVLGLAT 36
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET:
BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Length = 234
Score = 200 bits (510), Expect = 4e-63
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 9/163 (5%)
Query: 16 SARYVLKK-ITDFKPGPDNYFVLG-----LPTECVQYEKDIKEAGGIHLFVGGIGPDGHI 69
S Y +K+ + KP ++ L E Y++ + + I L + GIG + HI
Sbjct: 75 SYAYFMKQNLFAAKP-FKKSYLPNGLAADLAKETEYYDQILAQ-YPIDLQILGIGRNAHI 132
Query: 70 AFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILIT 129
FNEPG++ +S+T L L T+ AN+RFF+ + VPK+A+++G+ ++M A+ ++++
Sbjct: 133 GFNEPGTAFSSQTHLVDLTPSTIAANSRFFEK-AEDVPKQAISMGLASIMSAKMILLMAF 191
Query: 130 GSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 172
G KA A+ V+ V S Q HP I+I DE A +
Sbjct: 192 GEEKAEAVAAMVKGPVTEEIPASILQTHPKVILIVDEKAGAGI 234
Score = 181 bits (461), Expect = 9e-56
Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
GIG + HI FNEPG++ +S+T L L T+ AN+RFF+ + VPK+A+++G+ ++M A
Sbjct: 125 GIGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANSRFFEK-AEDVPKQAISMGLASIMSA 183
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 345
+ ++++ G KA A+ V+ V S Q HP I+I DE A +
Sbjct: 184 KMILLMAFGEEKAEAVAAMVKGPVTEEIPASILQTHPKVILIVDEKAGAGI 234
Score = 41.8 bits (99), Expect = 1e-04
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
M+ I + + + ++ + R + ++IT LGL T
Sbjct: 2 MKTIKVKNKTEGSKVAFRMLEEEITFGA------KTLGLAT 36
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, carboxylic
ester hydrolase; 2.10A {Mycobacterium smegmatis}
Length = 248
Score = 120 bits (304), Expect = 2e-32
Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 16/149 (10%)
Query: 29 PGPDNYFVLGLPTECVQYEKDIKEA-----GGIHLFVGGIGPDGHIAFNEPGSSLASRTR 83
D F L Y + + G + + G+G +GH+ P + T
Sbjct: 111 AASDGEFGDDLEAAAAGYAQLLSANFDSSVPGFDVHLLGMGGEGHVNSLFPDTDAVRETE 170
Query: 84 LKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEE 143
+ +D K P +T+ + V +++EV ++++G KA A+ AV
Sbjct: 171 RLVVG-----------VSDSPKPPPRRITLTLPAVQNSREVWLVVSGEAKADAVAAAVGG 219
Query: 144 GVNHMWTVSAFQMHPCTIMICDEDATQEL 172
+ T+ + DE A +L
Sbjct: 220 ADPVDIPAAGAVGRERTVWLVDEAAAAKL 248
Score = 106 bits (267), Expect = 4e-27
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G +GH+ P + T + +D K P +T+ + V ++
Sbjct: 149 GMGGEGHVNSLFPDTDAVRETERLVVG-----------VSDSPKPPPRRITLTLPAVQNS 197
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 345
+EV ++++G KA A+ AV + T+ + DE A +L
Sbjct: 198 REVWLVVSGEAKADAVAAAVGGADPVDIPAAGAVGRERTVWLVDEAAAAKL 248
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 123 bits (311), Expect = 3e-31
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
FEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + GI
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGI 521
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 121 bits (305), Expect = 2e-30
Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP G+
Sbjct: 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGL 455
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 119 bits (300), Expect = 1e-29
Identities = 34/58 (58%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGV 505
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 117 bits (295), Expect = 4e-29
Identities = 34/58 (58%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGV 505
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A
{Mycobacterium abscessus}
Length = 251
Score = 109 bits (275), Expect = 3e-28
Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 18/151 (11%)
Query: 29 PGPDNYFVLGLPTECVQYEKDIKEAG-------GIHLFVGGIGPDGHIAFNEPGSSLASR 81
P ++ + L + YE+ + + + G+G +GHI P +
Sbjct: 111 PNSESEYGTDLDAAALAYEQLLAANAEPGQDCPAFDVHLLGMGGEGHINSLFPHTDAVKE 170
Query: 82 TRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAV 141
T+ +A D K P + +T+ + + ++EV ++++G KA A+ AV
Sbjct: 171 TQRLVVA-----------VPDSPKPPPQRITLTLPAIQRSREVWLVVSGEAKADAVAAAV 219
Query: 142 EEGVNHMWTVSAFQMHPCTIMICDEDATQEL 172
+ + T+ + DE A +L
Sbjct: 220 GGADPVDVPAAGAKGIERTVWLLDEAAASQL 250
Score = 99.6 bits (249), Expect = 1e-24
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G +GHI P + T+ +A D K P + +T+ + + +
Sbjct: 151 GMGGEGHINSLFPHTDAVKETQRLVVA-----------VPDSPKPPPQRITLTLPAIQRS 199
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 345
+EV ++++G KA A+ AV + + T+ + DE A +L
Sbjct: 200 REVWLVVSGEAKADAVAAAVGGADPVDVPAAGAKGIERTVWLLDEAAASQL 250
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 113 bits (286), Expect = 7e-28
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 235
FEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P G
Sbjct: 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504
Query: 236 I 236
+
Sbjct: 505 L 505
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase,
malaria, carbohydrate metabolism, glucose metabolism,
NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium
vivax}
Length = 312
Score = 109 bits (275), Expect = 8e-28
Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 28/156 (17%)
Query: 42 ECVQYEKDIKEA----GGIHLFVGGIGPDGHIAFNEPGSS-------------------- 77
Y + IK + + + G+G D HIA P
Sbjct: 141 CVRDYNEKIKNMVKKYTKVDIAILGMGSDFHIASLFPNIFFNIYMNNYQNSYIYDESSIK 200
Query: 78 LASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFAL 137
+A+ L +F ++ +TV + + +A + L+ + K
Sbjct: 201 VANSNDTSDNDNLDLLKEYVYFTTTNNFDVRKRITVSLDLLGNASSKIFLLNSTDKLDLW 260
Query: 138 YKAVEEGVN----HMWTVSAFQMHPCTIMICDEDAT 169
+ + ++ T ++
Sbjct: 261 KNMLLKSYVDVNYCLYPAVYLIDSMNTTVVTCGYTN 296
Score = 95.7 bits (238), Expect = 1e-22
Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 24/132 (18%)
Query: 235 GIGPDGHIAFNEPGSS--------------------LASRTRLKTLAQETLEANARFFDN 274
G+G D HIA P +A+ L +F
Sbjct: 165 GMGSDFHIASLFPNIFFNIYMNNYQNSYIYDESSIKVANSNDTSDNDNLDLLKEYVYFTT 224
Query: 275 DIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVN----HMWTVSAFQMH 330
++ +TV + + +A + L+ + K + + ++
Sbjct: 225 TNNFDVRKRITVSLDLLGNASSKIFLLNSTDKLDLWKNMLLKSYVDVNYCLYPAVYLIDS 284
Query: 331 PCTIMICDEDAT 342
T ++
Sbjct: 285 MNTTVVTCGYTN 296
Score = 34.1 bits (78), Expect = 0.054
Identities = 8/42 (19%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDN-YFVLGLPT 41
++ + D+++ + SA Y+ +I + + + + V+GL
Sbjct: 27 VKYLEAKDLTDFNQKSAYYICHQIAEKQLSKEGGHVVIGLSG 68
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 112 bits (283), Expect = 2e-27
Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGI 236
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P GI
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 112 bits (282), Expect = 3e-27
Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGI 236
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P GI
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 112 bits (281), Expect = 3e-27
Identities = 36/59 (61%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP GI
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGI 529
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 111 bits (280), Expect = 4e-27
Identities = 35/59 (59%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGI 236
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP GI
Sbjct: 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGI 530
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 111 bits (279), Expect = 5e-27
Identities = 32/60 (53%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 179 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGIG 237
FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E N G
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate
pathway, hydrolase, zinc binding site; HET: FLC; 2.00A
{Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Length = 266
Score = 102 bits (256), Expect = 2e-25
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 21/145 (14%)
Query: 42 ECVQYEKDIKEA-------------GGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLA 88
Y K + + + G+G DGH A PGS T
Sbjct: 126 VAEAYGKQLASLLPLKSVGEAGPKVPVFDVVLLGLGSDGHTASIFPGSQAEKETD----- 180
Query: 89 QETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHM 148
+ F ++ K +T+ T+M A+ V++L TG+ K + + + + +
Sbjct: 181 --GKVVVSVGFPSETMKPKVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAHKA 238
Query: 149 WTVSAFQ-MHPCTIMICDEDATQEL 172
+ + D++ + L
Sbjct: 239 PVARFLRGCEGNVSFLLDKEIAENL 263
Score = 96.4 bits (240), Expect = 3e-23
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G DGH A PGS T + F ++ K +T+ T+M A
Sbjct: 159 GLGSDGHTASIFPGSQAEKETD-------GKVVVSVGFPSETMKPKVWRVTLSPATIMQA 211
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQ-MHPCTIMICDEDATQEL 345
+ V++L TG+ K + + + + + + + D++ + L
Sbjct: 212 RNVIVLATGAEKKWVVDGILADTAHKAPVARFLRGCEGNVSFLLDKEIAENL 263
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid,
hydrolase, structural genomics; 2.15A {Mycobacterium
tuberculosis}
Length = 268
Score = 101 bits (254), Expect = 4e-25
Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 20/152 (13%)
Query: 29 PGPDNYFVLGLPTECVQYEKDIKEAGGIHLFVG-------GIGPDGHIAFNEPGSS-LAS 80
D F L + YE+ + + G+GP+GHI P S +
Sbjct: 127 AASDGDFGGDLDAAALAYEQVLAASAAPGDPAPNFDVHLLGMGPEGHINSLFPHSPAVLE 186
Query: 81 RTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKA 140
TR+ +D K P +T+ + + ++EV +L++G KA A+ A
Sbjct: 187 STRMVVAV------------DDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAAA 234
Query: 141 VEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 172
+ + T+ + D DA +L
Sbjct: 235 IGGADPVSVPAAGAVGRQNTLWLLDRDAAAKL 266
Score = 91.6 bits (228), Expect = 2e-21
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
Query: 235 GIGPDGHIAFNEPGSS-LASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMD 293
G+GP+GHI P S + TR+ +D K P +T+ + +
Sbjct: 167 GMGPEGHINSLFPHSPAVLESTRMVVAV------------DDSPKPPPRRITLTLPAIQR 214
Query: 294 AQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 345
++EV +L++G KA A+ A+ + T+ + D DA +L
Sbjct: 215 SREVWLLVSGPGKADAVAAAIGGADPVSVPAAGAVGRQNTLWLLDRDAAAKL 266
>1y89_A DEVB protein; structural genomics, protein structure initiative,
PSI, MIDW center for structural genomics, MCSG; HET:
2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Length = 238
Score = 86.5 bits (215), Expect = 6e-20
Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 22/140 (15%)
Query: 42 ECVQYEKDIKEA-------GGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEA 94
E ++ + + + G+G DGH A PG + + L +A
Sbjct: 111 EAERFAQAMAHVIPTENGTPVFDWILLGVGADGHTASLFPGQTDYADANLSVVA------ 164
Query: 95 NARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHM-WTVSA 153
+ + ++ + A+ + L+ G+ KA + + + + +
Sbjct: 165 -------SHPESGQLRVSKTAKVLQAAKRISYLVLGAGKAEIVEQIHTTPAEQLPYPAAK 217
Query: 154 FQ-MHPCTIMICDEDATQEL 172
T D DA ++
Sbjct: 218 IHSTSGVTEWYLDSDAAAKI 237
Score = 81.2 bits (201), Expect = 6e-18
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 15/113 (13%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G DGH A PG + + L +A + + ++ + A
Sbjct: 138 GVGADGHTASLFPGQTDYADANLSVVA-------------SHPESGQLRVSKTAKVLQAA 184
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHM-WTVSAFQ-MHPCTIMICDEDATQEL 345
+ + L+ G+ KA + + + + + T D DA ++
Sbjct: 185 KRISYLVLGAGKAEIVEQIHTTPAEQLPYPAAKIHSTSGVTEWYLDSDAAAKI 237
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.9 bits (183), Expect = 9e-15
Identities = 59/323 (18%), Positives = 109/323 (33%), Gaps = 81/323 (25%)
Query: 3 LIILDDVSNVAEWSA-----------RYVLKKITDFKPG------PDNYFVLGL-PTE-- 42
L++L +V N W+A R+ K++TDF ++ + L P E
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 43 --CVQY----EKDI-KEAGGIH-LFVGGIG---PDGHIAFN---EPGSSLASRTRLKTL- 87
++Y +D+ +E + + I DG ++ + +L
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 88 AQETLEANARF-----FDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVE 142
E E F F +P L++ + + +VM+++ HK + K +
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSA-HIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 143 EGVNHMWTVSAFQMHPCTI-MICDEDATQELRVKTVNFEQLCINYANEHL------QYYF 195
E S + + + + L V+ + + ++ L QY++
Sbjct: 423 E--------STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 196 NQ---HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGIGPDGHIAFNEPGSSLA 252
+ H+ E E R F L + +E K I D A+N GS L
Sbjct: 475 SHIGHHLKNIEHPE--------RMTLFRMVFLDFRFLEQK---IRHDS-TAWNASGSILN 522
Query: 253 SRTRLKTLAQETLEANARFFDND 275
+ +LK DND
Sbjct: 523 TLQQLKFYKP-------YICDND 538
Score = 45.2 bits (106), Expect = 2e-05
Identities = 50/315 (15%), Positives = 92/315 (29%), Gaps = 86/315 (27%)
Query: 85 KTLAQETLEANARFFD-NDIKKVPKEALT-------VGVGTVMDAQEVMILITGSHKAFA 136
K + +A FD D++ +PK L+ + + + S +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 137 LYKAVEEGV--NHMWTVSAFQMHPCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYY 194
+ K VEE + N+ + +S + E R ++ Y + + Y
Sbjct: 79 VQKFVEEVLRINYKFLMSPIK--------------TEQRQPSMMTR----MYIEQRDRLY 120
Query: 195 FNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQ--------LVEGKPNGIG--------- 237
+ VF +YN R + L L++G G G
Sbjct: 121 NDNQVFA----KYN----VSRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALDVC 171
Query: 238 --------PDGHIAF-------NEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKE 282
D I F N P + L +L + + N K+
Sbjct: 172 LSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI--KLRIH 228
Query: 283 ALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMIC--DED 340
++ E+ L+ L V V + +AF + C I++ +
Sbjct: 229 SIQ---------AELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLS-CKILLTTRFKQ 276
Query: 341 ATQELRVKTVKYFKV 355
T L T + +
Sbjct: 277 VTDFLSAATTTHISL 291
Score = 42.9 bits (100), Expect = 1e-04
Identities = 25/190 (13%), Positives = 57/190 (30%), Gaps = 35/190 (18%)
Query: 145 VNHMWTVSAFQMHPCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQ 204
V + +AF + C I++ + + + +H
Sbjct: 253 VQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISL----DHHSMTL--------- 298
Query: 205 EEYNKEGI--RWRHIEFSDNTLCLQLVEGKP---NGIG---PDGHIAFN---EPGSSLAS 253
+ + ++ D L +++ P + I DG ++ +
Sbjct: 299 TPDEVKSLLLKYLDCRPQD--LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 254 RTRLKTL-AQETLEANARF-----FDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKA 307
+L E E F F +P L++ + + +VM+++ HK
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSL-IWFDVIKSDVMVVVNKLHKY 414
Query: 308 FALYKAVEEG 317
+ K +E
Sbjct: 415 SLVEKQPKES 424
Score = 40.6 bits (94), Expect = 7e-04
Identities = 45/338 (13%), Positives = 93/338 (27%), Gaps = 96/338 (28%)
Query: 4 IILD-DVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPTECVQYEK--DI---KEAGGIH 57
+ + D +V + + +L K + ++ + K+ +
Sbjct: 29 FVDNFDCKDVQD-MPKSILSK-EEID------HIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 58 LFVGGI-GPD-GHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPK------- 108
FV + + + S + + R ++ ND + K
Sbjct: 81 KFVEEVLRINYKFLM-----SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 109 ------EAL---------TV----GVG-TVMDAQEVM----ILITGSHKAF----ALYKA 140
+AL + G G T + A +V + K F +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 141 VEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVF 200
E + + + +Q+ P D + +LR I+ L+
Sbjct: 195 PETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLR----------IHSIQAELRRLLKSK-- 241
Query: 201 QYEQ------EEYNKEGIRWRHIEFSDNTLCLQLV----EGKPNGIGPD--GHIAFNEPG 248
YE N + W S C L+ + + + HI+ +
Sbjct: 242 PYENCLLVLLNVQNAK--AWNAFNLS----CKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 249 SSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTV 286
+L E ++ D + +P+E LT
Sbjct: 296 MTLTPD--------EVKSLLLKYLDCRPQDLPREVLTT 325
Score = 29.8 bits (66), Expect = 1.7
Identities = 31/206 (15%), Positives = 52/206 (25%), Gaps = 82/206 (39%)
Query: 18 RYVLKKITD----FKPGPDNYFVLGLPTECVQYEKDIKEAGGIHLFVGGIGPDG-HIAFN 72
Y + K D P D YF Y H+ G H+
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYF----------YS---------HI--------GHHLKNI 484
Query: 73 EPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSH 132
E + + + RF + I+ G++++ L
Sbjct: 485 EHPERMTLFRMVFL--------DFRFLEQKIRHD--STAWNASGSILN-----TLQQ--- 526
Query: 133 KAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTV-NF----EQLCINYA 187
YK + ICD D E V + +F E+ I
Sbjct: 527 --LKFYK------PY---------------ICDNDPKYERLVNAILDFLPKIEENLICS- 562
Query: 188 NEHLQYYFNQHVFQYEQEEYNKEGIR 213
++ + E E +E +
Sbjct: 563 -KYTDLL--RIALMAEDEAIFEEAHK 585
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural
genomics of pathogen protozoa consortium, SGPP, leish
hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Length = 267
Score = 71.5 bits (175), Expect = 2e-14
Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 26/179 (14%)
Query: 10 SNVAEWSARYVLKKITDFKPGPDNYFVLGLPTECVQ-YEKDIKEA-------------GG 55
+V S + + D L Q YE +
Sbjct: 97 RDVPS-SDVISIDRRAALATSKDEKGGLDGAWAVAQDYEVKLLNCLPCKQINGTAKSVPV 155
Query: 56 IHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGV 115
+ + + G G DGH A P S A+ + + F + +T+
Sbjct: 156 VDIVLLGFGSDGHTASIFPDSVAAT---------DEEHVVSVSFPSPTMSPKVWRVTLSK 206
Query: 116 GTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAF--QMHPCTIMICDEDATQEL 172
+ A+ V++L G K + + + E VS F ++ D A + +
Sbjct: 207 TVIQYAKHVVVLAAGKDKNWVVRGVLSESPTDPLPVSRFLRDCRGSVTLLLDPGAGEGV 265
Score = 68.1 bits (166), Expect = 3e-13
Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 11/113 (9%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G G DGH A P S A+ + + F + +T+ + A
Sbjct: 162 GFGSDGHTASIFPDSVAAT---------DEEHVVSVSFPSPTMSPKVWRVTLSKTVIQYA 212
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAF--QMHPCTIMICDEDATQEL 345
+ V++L G K + + + E VS F ++ D A + +
Sbjct: 213 KHVVVLAAGKDKNWVVRGVLSESPTDPLPVSRFLRDCRGSVTLLLDPGAGEGV 265
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A
{Shewanella baltica}
Length = 233
Score = 68.2 bits (167), Expect = 1e-13
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 10/117 (8%)
Query: 45 QYEKDIKE-AGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDI 103
+ + + V G+G DGH P S+ + L A +
Sbjct: 118 MAAESLSNFPRPFDVVVLGMGNDGHTCSWFPCSAEL---------ENALTTQALCVATNP 168
Query: 104 KKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCT 160
P +T+ +++++++ + + G K +A+E H + A T
Sbjct: 169 TTAPHGRITLSKSAILNSRQIYLHLVGEQKLSVYRQALESDDVHAMPIRAVLAQRKT 225
Score = 64.4 bits (157), Expect = 3e-12
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 9/99 (9%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G DGH P S+ + L A + P +T+ ++++
Sbjct: 136 GMGNDGHTCSWFPCSAEL---------ENALTTQALCVATNPTTAPHGRITLSKSAILNS 186
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCT 333
+++ + + G K +A+E H + A T
Sbjct: 187 RQIYLHLVGEQKLSVYRQALESDDVHAMPIRAVLAQRKT 225
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.33A {Neisseria
gonorrhoeae}
Length = 232
Score = 62.8 bits (153), Expect = 1e-11
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 46 YEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKK 105
+ +K + + G+G DGH A P + A + A
Sbjct: 118 VDYALKHYKQPDVLILGMGNDGHTASIFPKAPQFQ------TAIDGSAGVALVHTTP-VT 170
Query: 106 VPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHP 158
P E +++ + + V + I G K +A +G N + +S H
Sbjct: 171 APHERISMTLDAIAHTGHVFLAIQGEEKKAVFDQAA-QGENREYPISLVLNHQ 222
Score = 59.7 bits (145), Expect = 1e-10
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 8/97 (8%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G DGH A P + A + A P E +++ + +
Sbjct: 134 GMGNDGHTASIFPKAPQFQ------TAIDGSAGVALVHTTP-VTAPHERISMTLDAIAHT 186
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHP 331
V + I G K +A +G N + +S H
Sbjct: 187 GHVFLAIQGEEKKAVFDQAA-QGENREYPISLVLNHQ 222
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative hydrolase;
1.75A {Chromohalobacter salexigens}
Length = 226
Score = 61.6 bits (150), Expect = 3e-11
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 10/117 (8%)
Query: 46 YEKDIKEA-GGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIK 104
+ ++ + G+G DGH A P S LE +
Sbjct: 115 VAERLESLPWPASAVILGMGGDGHTASLFPDSEQL---------ATALETTSAAVVVHAP 165
Query: 105 KVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTI 161
VP+ +T+ + DA ++ ITG+ K L +A+ + AF P
Sbjct: 166 SVPQARITLSASRLADAGLHVLHITGNDKRRVLAEALAGDDVRQLPIRAFLSQPIAT 222
Score = 58.5 bits (142), Expect = 3e-10
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+G DGH A P S LE + VP+ +T+ + DA
Sbjct: 132 GMGGDGHTASLFPDSEQL---------ATALETTSAAVVVHAPSVPQARITLSASRLADA 182
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTI 334
++ ITG+ K L +A+ + AF P
Sbjct: 183 GLHVLHITGNDKRRVLAEALAGDDVRQLPIRAFLSQPIAT 222
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima}
SCOP: c.124.1.1 PDB: 1pbt_A
Length = 232
Score = 57.7 bits (140), Expect = 8e-10
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 17/131 (12%)
Query: 37 LGLPTECVQYEKDIKEA-GGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEAN 95
L + C +YE++I+ A L + G+GPDGH+A + N
Sbjct: 118 LPIEKACEKYEREIRSATDQFDLAILGMGPDGHVASIFDLE-------------TGNKDN 164
Query: 96 ARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQ 155
F + +T+ + + V+ LI G K L + +++ +
Sbjct: 165 LVTFTDPSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKINRLTEILKDT---PLPAYFVR 221
Query: 156 MHPCTIMICDE 166
T+ +
Sbjct: 222 GKEKTVWFVGK 232
Score = 51.5 bits (124), Expect = 7e-08
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDA 294
G+GPDGH+A + N F + +T+ + +
Sbjct: 144 GMGPDGHVASIFDLE-------------TGNKDNLVTFTDPSGDPKVPRVTLTFRALNTS 190
Query: 295 QEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDE 339
V+ LI G K L + +++ + T+ +
Sbjct: 191 LYVLFLIRGKEKINRLTEILKDT---PLPAYFVRGKEKTVWFVGK 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 62/370 (16%), Positives = 121/370 (32%), Gaps = 98/370 (26%)
Query: 13 AEWSARYVLKKITDFKPGPDNYFVLGLPTECVQYEKDIKEAGGIHL---FVGGIGPDGHI 69
A + L++ F +L PTE + D + L F+G ++
Sbjct: 25 ASFFIASQLQE--QFNK------ILPEPTE--GFAADDEPTTPAELVGKFLG------YV 68
Query: 70 AFNEPGSSLASRTRLKTLAQETLEANARF-FDNDIKKVPKEALTVGVGTVMDAQEVM--- 125
+ S + ++ L E + NDI + + L T++ +E++
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENC--YLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 126 --------ILITGSHKAFALYKAVEEGVNHMWTVSAF--QMHPCTIMICDEDATQELRV- 174
+ AL++AV EG + + F Q + +D +ELR
Sbjct: 127 ITARIMAKRPFDKKSNS-ALFRAVGEGNAQLVAI--FGGQGNT-------DDYFEELRDL 176
Query: 175 -KTVN-FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGI---RW-------------RH 216
+T + I ++ E L + + E+ +G+ W
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTL---DAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 217 IEFSDNTLCL-QL----VEGKPNGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARF 271
I S + + QL V K G P G + G++ S+ + +A ++ F
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTP-GELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 272 FDNDIKKV--------------PKEALTVGVGTVMDAQEV-------MILITGSHKAFAL 310
F + K + P +L + + D+ E M+ I+ + +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSI--LEDSLENNEGVPSPMLSISNLTQE-QV 349
Query: 311 YKAVEEGVNH 320
V + N
Sbjct: 350 QDYVNK-TNS 358
Score = 32.7 bits (74), Expect = 0.20
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 25/79 (31%)
Query: 2 RLIILDDVSNVAEW------SARYVLKKITDFKPGPDNYFVLGLPTECVQYEKDIKEAGG 55
II V +W A ++L DF GP LG+ T K+ G
Sbjct: 481 DCIIRLPV----KWETTTQFKATHIL----DF--GPGGASGLGVLT------HRNKDGTG 524
Query: 56 IHLFVGG---IGPDGHIAF 71
+ + V G I PD F
Sbjct: 525 VRVIVAGTLDINPDDDYGF 543
Score = 30.0 bits (67), Expect = 1.3
Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 26/121 (21%)
Query: 240 GHIAFNEPGSSLASRTRLKTLAQETLEANARF-FDNDIKKVPKEALTVGVGTVMDAQEVM 298
G+++ S + ++ L E + NDI + + L T++ +E++
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENC--YLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 299 -----------ILITGSHKAFALYKAVEEGVNHMWTVSAF--QMHPCTIMICDEDATQEL 345
+ AL++AV EG + + F Q + +D +EL
Sbjct: 124 KNYITARIMAKRPFDKKSNS-ALFRAVGEGNAQLVAI--FGGQGNT-------DDYFEEL 173
Query: 346 R 346
R
Sbjct: 174 R 174
>2r5f_A Transcriptional regulator, putative; transcription regulator,
sugar-binding domain, structural GE PFAM04198, PSI-2;
2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Length = 264
Score = 31.3 bits (71), Expect = 0.37
Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 19/129 (14%)
Query: 50 IKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETL--EANARFFDNDIKKVP 107
+ I L + GIG + + L+ LA+ + R+FD K V
Sbjct: 147 LHRFDSITLAIVGIGELEPSQLLRNSGNYYTEDMLRVLAERGAVGDICLRYFDAQGKPVL 206
Query: 108 KE----ALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMI 163
+E +++G+G + V+ L G K A+ A ++I
Sbjct: 207 EEDEEFVVSMGLGKLRSINRVLGLAGGVRKVQAIK-------------GALLGGYLDVLI 253
Query: 164 CDEDATQEL 172
D + L
Sbjct: 254 TDVGTARGL 262
Score = 31.0 bits (70), Expect = 0.52
Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 19/117 (16%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETL--EANARFFDNDIKKVPKE----ALTVGV 288
GIG + + L+ LA+ + R+FD K V +E +++G+
Sbjct: 159 GIGELEPSQLLRNSGNYYTEDMLRVLAERGAVGDICLRYFDAQGKPVLEEDEEFVVSMGL 218
Query: 289 GTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 345
G + V+ L G K A+ A ++I D + L
Sbjct: 219 GKLRSINRVLGLAGGVRKVQAIK-------------GALLGGYLDVLITDVGTARGL 262
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich,
rossmann-like fold, structural genomics, PSI-2, protein
structure initiative; HET: MSE G3H; 1.65A {Bacillus
subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A*
3bxh_A*
Length = 255
Score = 30.9 bits (70), Expect = 0.58
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 93 EANARFFDNDIKKVPKEALTVGV--GTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWT 150
EA +F+ D + V K +VG+ + +++ + GS KA A+
Sbjct: 184 EAFGYYFNADGEVVHKV-HSVGMQLDDIDAIPDIIAVAGGSSKAEAIE------------ 230
Query: 151 VSAFQMHPCTIMICDEDATQEL 172
+ F+ T+++ DE A ++L
Sbjct: 231 -AYFKKPRNTVLVTDEGAAKKL 251
Score = 30.9 bits (70), Expect = 0.58
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 266 EANARFFDNDIKKVPKEALTVGV--GTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWT 323
EA +F+ D + V K +VG+ + +++ + GS KA A+
Sbjct: 184 EAFGYYFNADGEVVHKV-HSVGMQLDDIDAIPDIIAVAGGSSKAEAIE------------ 230
Query: 324 VSAFQMHPCTIMICDEDATQEL 345
+ F+ T+++ DE A ++L
Sbjct: 231 -AYFKKPRNTVLVTDEGAAKKL 251
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus} PDB: 2yw4_A
Length = 207
Score = 29.8 bits (67), Expect = 1.0
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 276 IKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIM 335
+K + K L +G GTV +E + + AF + + E V + P +
Sbjct: 55 LKALRKSGLLLGAGTVRSPKEAEAAL-EAGAAFLVSPGLLEEVAALAQARGVPYLPGVLT 113
Query: 336 ICDEDATQELRVKTVKYF 353
+ + L + +K+F
Sbjct: 114 PTEVERALALGLSALKFF 131
Score = 29.1 bits (65), Expect = 1.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 103 IKKVPKEALTVGVGTVMDAQEVMILI 128
+K + K L +G GTV +E +
Sbjct: 55 LKALRKSGLLLGAGTVRSPKEAEAAL 80
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate
aminotransferase, pyridoxal-5-phosphate, SAD, glycolate
pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae}
SCOP: c.67.1.3
Length = 385
Score = 28.4 bits (64), Expect = 3.4
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 103 IKKVPKEALTV-----GVGTV---MDAQEVMILITGSHKAFAL 137
IK+ E V +G D V +T S KA
Sbjct: 163 IKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGA 205
Score = 28.4 bits (64), Expect = 3.4
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 276 IKKVPKEALTV-----GVGTV---MDAQEVMILITGSHKAFAL 310
IK+ E V +G D V +T S KA
Sbjct: 163 IKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGA 205
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate,
beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Length = 225
Score = 28.3 bits (63), Expect = 3.8
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 276 IKKVPKEA--LTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCT 333
I+ + ++ L VG GTV+D + + F + + E + S + P
Sbjct: 68 IQVLREQRPELCVGAGTVLDRSMFAAVE-AAGAQFVVTPGITEDILEAGVDSEIPLLPGI 126
Query: 334 IMICDEDATQELRVKTVKYF 353
+ L + K F
Sbjct: 127 STPSEIMMGYALGYRRFKLF 146
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase,
galactose metabolism; HET: GDU; 1.80A {Escherichia coli}
SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Length = 348
Score = 28.4 bits (62), Expect = 4.2
Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 1/109 (0%)
Query: 107 PKEALTVGVGTVMDAQEVMILITGSHKA-FALYKAVEEGVNHMWTVSAFQMHPCTIMICD 165
P + T+ +V E++ Y V+ N + HP + +
Sbjct: 113 PDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPGGQIWAN 172
Query: 166 EDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRW 214
E + ++ + L Y + + + E
Sbjct: 173 SFLPNEAEREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEHWLA 221
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc,
AMP, structural genomics, protein structure initiative,
CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP:
d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Length = 351
Score = 27.9 bits (61), Expect = 4.7
Identities = 12/116 (10%), Positives = 31/116 (26%), Gaps = 15/116 (12%)
Query: 107 PKEALTVGVGTVMDAQEVMILITGSHKAFAL---YKAVEEGVNHMWTVSAFQMHPCTIMI 163
P ++ + + +++I A ++ N + A H + M+
Sbjct: 131 PVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMM 190
Query: 164 CDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 219
+ + + + YF + E +K + F
Sbjct: 191 ALPVVPPTVSSR------------LDGTKDYFEETGKCCLCEAKSKHFVIDESSHF 234
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 27.5 bits (61), Expect = 5.1
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 103 IKKVPKEALTVGVGTVMDAQEVMILI 128
I + +G GTV+ ++V L
Sbjct: 52 IVDAYGDKALIGAGTVLKPEQVDALA 77
Score = 27.5 bits (61), Expect = 5.1
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 276 IKKVPKEALTVGVGTVMDAQEVMILI 301
I + +G GTV+ ++V L
Sbjct: 52 IVDAYGDKALIGAGTVLKPEQVDALA 77
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 27.6 bits (62), Expect = 7.2
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 13/50 (26%)
Query: 101 NDIKKVPK-----EALTV-----GVGTV---MDAQEVMILITGSHKAFAL 137
+ + + L + +G V MD Q + I+ + S K
Sbjct: 165 QPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNA 214
Score = 27.6 bits (62), Expect = 7.2
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 13/50 (26%)
Query: 274 NDIKKVPK-----EALTV-----GVGTV---MDAQEVMILITGSHKAFAL 310
+ + + L + +G V MD Q + I+ + S K
Sbjct: 165 QPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNA 214
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
CON nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 27.5 bits (62), Expect = 7.5
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 53 AGGIHLFVGGIGPDGHIAFNEPG 75
G+HLF G + D H+ FNEPG
Sbjct: 52 GTGLHLFPGMV--DVHVHFNEPG 72
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 27.1 bits (60), Expect = 7.9
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 103 IKKVPKEA--LTVGVGTVMDAQEVMILI 128
I+ + + GTV+ A++V++
Sbjct: 59 IRLLRANRPDFLIAAGTVLTAEQVVLAK 86
Score = 27.1 bits (60), Expect = 7.9
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 276 IKKVPKEA--LTVGVGTVMDAQEVMILI 301
I+ + + GTV+ A++V++
Sbjct: 59 IRLLRANRPDFLIAAGTVLTAEQVVLAK 86
>1iug_A Putative aspartate aminotransferase; wild type,
pyridoxal-5'-phosphate form, riken structural
genomics/proteomics initiative, RSGI; HET: LLP; 2.20A
{Thermus thermophilus} SCOP: c.67.1.3
Length = 352
Score = 27.2 bits (61), Expect = 7.9
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 8/43 (18%)
Query: 103 IKKVPKEALTV-----GVGTV---MDAQEVMILITGSHKAFAL 137
K+ E L + ++A V +GS K
Sbjct: 147 FKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMC 189
Score = 27.2 bits (61), Expect = 7.9
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 8/43 (18%)
Query: 276 IKKVPKEALTV-----GVGTV---MDAQEVMILITGSHKAFAL 310
K+ E L + ++A V +GS K
Sbjct: 147 FKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMC 189
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 27.2 bits (61), Expect = 8.7
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 13/50 (26%)
Query: 101 NDIKKVPK-----EALTV-----GVGTV---MDAQEVMILITGSHKAFAL 137
N + + AL +G + M A V TGS K +
Sbjct: 141 NPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSA 190
Score = 27.2 bits (61), Expect = 8.7
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 13/50 (26%)
Query: 274 NDIKKVPK-----EALTV-----GVGTV---MDAQEVMILITGSHKAFAL 310
N + + AL +G + M A V TGS K +
Sbjct: 141 NPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSA 190
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 27.2 bits (61), Expect = 9.0
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 13/50 (26%)
Query: 101 NDIKKVPK-----EALTV-----GVGTV---MDAQEVMILITGSHKAFAL 137
++ V L + +G MD E+ + TGS K
Sbjct: 161 QGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGA 210
Score = 27.2 bits (61), Expect = 9.0
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 13/50 (26%)
Query: 274 NDIKKVPK-----EALTV-----GVGTV---MDAQEVMILITGSHKAFAL 310
++ V L + +G MD E+ + TGS K
Sbjct: 161 QGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGA 210
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,542,086
Number of extensions: 338922
Number of successful extensions: 926
Number of sequences better than 10.0: 1
Number of HSP's gapped: 888
Number of HSP's successfully gapped: 102
Length of query: 357
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 262
Effective length of database: 4,049,298
Effective search space: 1060916076
Effective search space used: 1060916076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)