RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2118
(357 letters)
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Human (Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 143 bits (362), Expect = 3e-41
Identities = 115/235 (48%), Positives = 140/235 (59%), Gaps = 18/235 (7%)
Query: 124 VMILITGSHKAFALYKAVEEGVNHM---WT-VSAFQMHPCTIMICDEDATQELRVKTVNF 179
+ L TGS YK + E + + V F M + D + + F
Sbjct: 36 TLGLPTGS-TPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFF 94
Query: 180 EQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGIGPD 239
+ + I+ N H+ + K I+ + GIGPD
Sbjct: 95 KHIDIHPENTHILDGNAVDLQAECDAFEEK-------IKAAGGIELFVG------GIGPD 141
Query: 240 GHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMI 299
GHIAFNEPGSSL SRTR+KTLA +T+ ANARFFD ++ KVP ALTVGVGTVMDA+EVMI
Sbjct: 142 GHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMI 201
Query: 300 LITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFK 354
LITG+HKAFALYKA+EEGVNHMWTVSAFQ HP T+ +CDEDAT EL+VKTVKYFK
Sbjct: 202 LITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFK 256
Score = 141 bits (357), Expect = 2e-40
Identities = 108/167 (64%), Positives = 129/167 (77%), Gaps = 5/167 (2%)
Query: 43 CVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDND 102
C +E+ IK AGGI LFVGGIGPDGHIAFNEPGSSL SRTR+KTLA +T+ ANARFFD +
Sbjct: 118 CDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGE 177
Query: 103 IKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIM 162
+ KVP ALTVGVGTVMDA+EVMILITG+HKAFALYKA+EEGVNHMWTVSAFQ HP T+
Sbjct: 178 LTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVF 237
Query: 163 ICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNK 209
+CDEDAT EL+VKTV + + + ++ +++E K
Sbjct: 238 VCDEDATLELKVKTVKYFK-----GLMLVHNKLVDPLYSIKEKETEK 279
Score = 51.3 bits (122), Expect = 6e-08
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
M+LIIL+ S +EW+A+Y+ +I F PGP+ YF LGLPT
Sbjct: 1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPT 41
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Escherichia coli [TaxId: 562]}
Length = 266
Score = 142 bits (359), Expect = 6e-41
Identities = 106/271 (39%), Positives = 142/271 (52%), Gaps = 27/271 (9%)
Query: 88 AQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNH 147
A++ + AR N I A D V+ L TG YKA+ E
Sbjct: 9 AEQVGKWAARHIVNRINAFKPTA---------DRPFVLGLPTGG-TPMTTYKALVEMHKA 58
Query: 148 M---WT-VSAFQMHPCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYE 203
+ V F M + + + + F+ + I N +L
Sbjct: 59 GQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNG--------N 110
Query: 204 QEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGIGPDGHIAFNEPGSSLASRTRLKTLAQE 263
+ + E ++ S + L + G+G DGHIAFNEP SSLASRTR+KTL +
Sbjct: 111 APDIDAECRQYEEKIRSYGKIHLFMG-----GVGNDGHIAFNEPASSLASRTRIKTLTHD 165
Query: 264 TLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWT 323
T AN+RFFDND+ +VPK ALTVGVGT++DA+EVMIL+ GS KA AL AVE VNHMWT
Sbjct: 166 TRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWT 225
Query: 324 VSAFQMHPCTIMICDEDATQELRVKTVKYFK 354
+S Q+HP IM+CDE +T EL+VKT++YF
Sbjct: 226 ISCLQLHPKAIMVCDEPSTMELKVKTLRYFN 256
Score = 141 bits (356), Expect = 2e-40
Identities = 90/137 (65%), Positives = 110/137 (80%)
Query: 43 CVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDND 102
C QYE+ I+ G IHLF+GG+G DGHIAFNEP SSLASRTR+KTL +T AN+RFFDND
Sbjct: 118 CRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDND 177
Query: 103 IKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIM 162
+ +VPK ALTVGVGT++DA+EVMIL+ GS KA AL AVE VNHMWT+S Q+HP IM
Sbjct: 178 VNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIM 237
Query: 163 ICDEDATQELRVKTVNF 179
+CDE +T EL+VKT+ +
Sbjct: 238 VCDEPSTMELKVKTLRY 254
Score = 51.7 bits (123), Expect = 3e-08
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 1 MRLIILDDVSNVAEWSARYVLKKITDFKPGPDNYFVLGLPT 41
MRLI L V +W+AR+++ +I FKP D FVLGLPT
Sbjct: 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPT 41
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
flexneri [TaxId: 623]}
Length = 255
Score = 71.6 bits (175), Expect = 5e-15
Identities = 14/136 (10%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 42 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETL-EANARFFD 100
+ ++ + + + GIG + A++ + +RFFD
Sbjct: 131 QSQHFKTISAYWDNLDIALVGIGSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFD 190
Query: 101 NDIKKV----PKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQM 156
V ++ L++ + + A+ + + K + A+ +
Sbjct: 191 IHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGAL-------------RG 237
Query: 157 HPCTIMICDEDATQEL 172
++ + + L
Sbjct: 238 KYINCLVTNSSTAELL 253
Score = 64.7 bits (157), Expect = 1e-12
Identities = 35/309 (11%), Positives = 92/309 (29%), Gaps = 61/309 (19%)
Query: 42 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDN 101
E + E+ +K+ G+ D + G+ T+L + A+ D
Sbjct: 1 ENLWLEQQLKQKFGLK--------DVVVV---SGNDEDEETQLAMMGL----HGAQLLDR 45
Query: 102 DIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTI 161
++ P + + G + A ++ + + ++ L G S + ++ T
Sbjct: 46 LLE--PGDIVGFSWGRAVSA--LVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLTY 101
Query: 162 MICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 221
+ + + L ++ + + + W +++
Sbjct: 102 SAAAKL-----------KGESHLADFPALLDNPLIRNGIM-QSQHFKTISAYWDNLD--- 146
Query: 222 NTLCLQLVEGKPNGIGPDGHIAFNEPGSSLASRTRLKTLAQETL-EANARFFDNDIKKV- 279
+ LV GIG + A++ + +RFFD V
Sbjct: 147 ----IALV-----GIGSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVE 197
Query: 280 ---PKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMI 336
++ L++ + + A+ + + K + A+ + ++
Sbjct: 198 TNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGAL-------------RGKYINCLV 244
Query: 337 CDEDATQEL 345
+ + L
Sbjct: 245 TNSSTAELL 253
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 72.8 bits (178), Expect = 1e-14
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 9/179 (5%)
Query: 67 GHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMI 126
G+I F E T +K ++L A A D + + + T + + +I
Sbjct: 269 GNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVI 328
Query: 127 LITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL--------RVKTVN 178
+ A + + + TI+ C + + V N
Sbjct: 329 SVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQNN 388
Query: 179 -FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGI 236
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP G+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGL 447
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965
{Enterococcus faecalis [TaxId: 1351]}
Length = 247
Score = 70.4 bits (172), Expect = 1e-14
Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 17/130 (13%)
Query: 45 QYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIK 104
++ + + V IG H+A S + E+ FFD +
Sbjct: 131 SIQEVLTLISHANCVVHSIGRALHMAARRKMSD--DEMVMLKQKNAVAESFGYFFDEE-G 187
Query: 105 KVPKEALTVGVG--TVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIM 162
KV + +G+ + + V+ + G KA A+ ++ T +
Sbjct: 188 KVVYKIPRIGLQLKNLQEIPYVVAIAGGKTKAKAIRAYMKNA------------PKQTWL 235
Query: 163 ICDEDATQEL 172
I DE A E+
Sbjct: 236 ITDEAAANEI 245
Score = 63.9 bits (155), Expect = 3e-12
Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 17/113 (15%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVG--TVM 292
IG H+A S + E+ FFD + KV + +G+ +
Sbjct: 148 SIGRALHMAARRKMSD--DEMVMLKQKNAVAESFGYFFDEE-GKVVYKIPRIGLQLKNLQ 204
Query: 293 DAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 345
+ V+ + G KA A+ ++ T +I DE A E+
Sbjct: 205 EIPYVVAIAGGKTKAKAIRAYMKNA------------PKQTWLITDEAAANEI 245
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR
{Bacillus subtilis [TaxId: 1423]}
Length = 250
Score = 69.3 bits (169), Expect = 4e-14
Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 46 YEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKK 105
++ + + V GIG +A + A EA +F+ D +
Sbjct: 136 VKEVLNTIKSASMLVHGIGEAKTMAQRRNTPLEDLKKIDDNDA--VTEAFGYYFNAD-GE 192
Query: 106 VPKEALTVGVG--TVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMI 163
V + +VG+ + +++ + GS KA A+ + F+ T+++
Sbjct: 193 VVHKVHSVGMQLDDIDAIPDIIAVAGGSSKAEAIE-------------AYFKKPRNTVLV 239
Query: 164 CDEDATQEL 172
DE A ++L
Sbjct: 240 TDEGAAKKL 248
Score = 62.3 bits (151), Expect = 7e-12
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVG--TVM 292
GIG +A + A EA +F+ D +V + +VG+ +
Sbjct: 152 GIGEAKTMAQRRNTPLEDLKKIDDNDA--VTEAFGYYFNAD-GEVVHKVHSVGMQLDDID 208
Query: 293 DAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 345
+++ + GS KA A+ + F+ T+++ DE A ++L
Sbjct: 209 AIPDIIAVAGGSSKAEAIE-------------AYFKKPRNTVLVTDEGAAKKL 248
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 68.6 bits (167), Expect = 3e-13
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 155 QMHPCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRW 214
Q I + D + + FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W
Sbjct: 404 QPRQYFIGVLDIAGFEIFDFNS--FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEW 461
Query: 215 RHIEFSDNTLCLQLVEGKPNGI 236
I+F + + KP GI
Sbjct: 462 EFIDFGMDLAACIELIEKPMGI 483
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 67.4 bits (164), Expect = 7e-13
Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGIG 237
+FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + KP GI
Sbjct: 423 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGIL 482
Query: 238 PDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEA 283
P + ++ L Q + N F P +
Sbjct: 483 SILEEECMFPKAD--DKSFQDKLYQNHMGKNRMFTKPGKPTRPNQG 526
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 67.1 bits (163), Expect = 9e-13
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 154 FQMHPCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIR 213
+ + I D + + +FEQLCINY NE LQ FN +F EQEEY +EGI
Sbjct: 375 KRQGASFLGILDIAGFEIFEI--NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIE 432
Query: 214 WRHIEFS-DNTLCLQLVEGKPNGIG 237
W I+F D C++L+E N G
Sbjct: 433 WNFIDFGLDLQPCIELIERPTNPPG 457
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 64.8 bits (157), Expect = 5e-12
Identities = 34/55 (61%), Positives = 39/55 (70%)
Query: 178 NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 232
+FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K
Sbjct: 386 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK 440
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395
{Pseudomonas syringae [TaxId: 317]}
Length = 258
Score = 62.3 bits (151), Expect = 1e-11
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 19/137 (13%)
Query: 42 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETL--EANARFF 99
E + ++ + I L + GIG + + L+ LA+ + R+F
Sbjct: 134 EMEEVKEVLHRFDSITLAIVGIGELEPSQLLRNSGNYYTEDMLRVLAERGAVGDICLRYF 193
Query: 100 DNDIKKVPKE----ALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQ 155
D K V +E +++G+G + V+ L G K A+ A
Sbjct: 194 DAQGKPVLEEDEEFVVSMGLGKLRSINRVLGLAGGVRKVQAIK-------------GALL 240
Query: 156 MHPCTIMICDEDATQEL 172
++I D + L
Sbjct: 241 GGYLDVLITDVGTARGL 257
Score = 56.2 bits (135), Expect = 1e-09
Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 19/117 (16%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETL--EANARFFDNDIKKVPKE----ALTVGV 288
GIG + + L+ LA+ + R+FD K V +E +++G+
Sbjct: 154 GIGELEPSQLLRNSGNYYTEDMLRVLAERGAVGDICLRYFDAQGKPVLEEDEEFVVSMGL 213
Query: 289 GTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 345
G + V+ L G K A+ A ++I D + L
Sbjct: 214 GKLRSINRVLGLAGGVRKVQAIK-------------GALLGGYLDVLITDVGTARGL 257
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 262
Score = 61.5 bits (149), Expect = 1e-11
Identities = 18/136 (13%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 42 ECVQYEKDIKEAGGIHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETL-EANARFFD 100
+ +E + + V GIG + ++ L + +T+ E RFFD
Sbjct: 134 QSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVGEICCRFFD 193
Query: 101 NDIKKV----PKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQM 156
+ K+V + + + + + + + + + G K ++ + +
Sbjct: 194 SKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLV---------- 243
Query: 157 HPCTIMICDEDATQEL 172
+I D++ ++
Sbjct: 244 ---NHLITDKNTILKV 256
Score = 54.6 bits (131), Expect = 4e-09
Identities = 16/116 (13%), Positives = 42/116 (36%), Gaps = 18/116 (15%)
Query: 235 GIGPDGHIAFNEPGSSLASRTRLKTLAQETL-EANARFFDNDIKKV----PKEALTVGVG 289
GIG + ++ L + +T+ E RFFD+ K+V + + + +
Sbjct: 154 GIGDFSNKGKHQWLDMLTEDDFKELTKVKTVGEICCRFFDSKGKEVYENLQERTIAISLE 213
Query: 290 TVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 345
+ + + + + G K ++ + + +I D++ ++
Sbjct: 214 DLKNIPQSLAVAYGDTKVSSILSVLRANLV-------------NHLITDKNTILKV 256
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 62.4 bits (151), Expect = 3e-11
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 137 LYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFN 196
L+ + + +N++ + I + D + +V + FEQLCINY NE LQ +FN
Sbjct: 382 LFLWLVKKINNVLC---QERKAYFIGVLDISGFEIFKVNS--FEQLCINYTNEKLQQFFN 436
Query: 197 QHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGI 236
H+F+ EQEEY KE I W I+F D+ + L++G +P GI
Sbjct: 437 HHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 478
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga
maritima [TaxId: 2336]}
Length = 218
Score = 48.4 bits (114), Expect = 3e-07
Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 16/110 (14%)
Query: 56 IHLFVGGIGPDGHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGV 115
L + G+GPDGH+A + N F + +T+
Sbjct: 124 FDLAILGMGPDGHVASIFDLETGNKD-------------NLVTFTDPSGDPKVPRVTLTF 170
Query: 116 GTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICD 165
+ + V+ LI G K L + ++ + + T+
Sbjct: 171 RALNTSLYVLFLIRGKEKINRLTEILK---DTPLPAYFVRGKEKTVWFVG 217
Score = 47.2 bits (111), Expect = 7e-07
Identities = 24/159 (15%), Positives = 43/159 (27%), Gaps = 22/159 (13%)
Query: 183 CINYANEHLQYYFN---QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGIGPD 239
NE L +V + ++ E T L G+GPD
Sbjct: 78 NFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRSATDQFDLAIL---GMGPD 134
Query: 240 GHIAFNEPGSSLASRTRLKTLAQETLEANARFFDNDIKKVPKEALTVGVGTVMDAQEVMI 299
GH+A + N F + +T+ + + V+
Sbjct: 135 GHVASIFDLETGNKD-------------NLVTFTDPSGDPKVPRVTLTFRALNTSLYVLF 181
Query: 300 LITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICD 338
LI G K L + ++ + + T+
Sbjct: 182 LIRGKEKINRLTEILK---DTPLPAYFVRGKEKTVWFVG 217
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 28.9 bits (64), Expect = 0.81
Identities = 13/72 (18%), Positives = 26/72 (36%)
Query: 285 TVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQE 344
+ TV+DA + + SH+ + + + + S TI+I + D
Sbjct: 140 DTALNTVIDAIDKIRDTATSHERTYVIEVMGRHAGDIALWSGLAGGAETILIPEADYDMN 199
Query: 345 LRVKTVKYFKVR 356
+ +K R
Sbjct: 200 DVIARLKRGHER 211
Score = 28.9 bits (64), Expect = 0.89
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 5/102 (4%)
Query: 112 TVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHPCTIMICDEDATQE 171
+ TV+DA + + SH+ + + + + S TI+I + D
Sbjct: 140 DTALNTVIDAIDKIRDTATSHERTYVIEVMGRHAGDIALWSGLAGGAETILIPEADYDMN 199
Query: 172 LRVKTVNFEQL-----CINYANEHLQYYFNQHVFQYEQEEYN 208
+ + I E + + E +
Sbjct: 200 DVIARLKRGHERGKKHSIIIVAEGVGSGVDFGRQIQEATGFE 241
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV
{Escherichia coli [TaxId: 562]}
Length = 259
Score = 28.9 bits (63), Expect = 0.85
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 10/118 (8%)
Query: 99 FDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHP 158
F D + + A GVG +I+ + FA + + N+ +A +HP
Sbjct: 17 FSGDEEASLQRAAQAGVGK-------IIVPATEAENFA--RVLALAENYQPLYAALGLHP 67
Query: 159 CTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRH 216
+ + + ++L+ + E F Q+ E ++
Sbjct: 68 GMLEKHSDVSLEQLQQALERRPAKVVAV-GEIGLDLFGDDPQFERQQWLLDEQLKLAK 124
Score = 27.7 bits (60), Expect = 2.3
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 272 FDNDIKKVPKEALTVGVGTVMDAQEVMILITGSHKAFALYKAVEEGVNHMWTVSAFQMHP 331
F D + + A GVG +I+ + FA + + N+ +A +HP
Sbjct: 17 FSGDEEASLQRAAQAGVGK-------IIVPATEAENFA--RVLALAENYQPLYAALGLHP 67
Query: 332 CTIMICDEDATQELRVKTVKY 352
+ + + ++L+ +
Sbjct: 68 GMLEKHSDVSLEQLQQALERR 88
>d1p15a_ c.45.1.2 (A:) Protein-tyrosine phosphatase alpha {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 245
Score = 25.9 bits (56), Expect = 6.6
Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 142 EEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVNFEQLCINYANEHLQYYFNQHVFQ 201
+ W + +M+ + + E+ + ++ L Y + V
Sbjct: 62 LHTIEDFWRMIWEWKSCSIVMLTELEER--------GQEKCAQYWPSDGLVSYGDITVEL 113
Query: 202 YEQEEYNKEGIRWRHIEFSDN 222
++EE +R + +
Sbjct: 114 KKEEECESYTVRDLLVTNTRE 134
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,350,836
Number of extensions: 62718
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 38
Length of query: 357
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,226,816
Effective search space: 332467136
Effective search space used: 332467136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)