Query psy2121
Match_columns 66
No_of_seqs 132 out of 1005
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 16:36:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00502 nagB glucosamine-6-p 99.6 1.7E-15 3.6E-20 102.0 6.2 62 5-66 197-258 (259)
2 PRK00443 nagB glucosamine-6-ph 99.6 4.5E-15 9.7E-20 98.9 6.0 62 5-66 197-258 (261)
3 PTZ00285 glucosamine-6-phospha 99.6 4.4E-15 9.5E-20 99.8 4.8 56 5-60 197-252 (253)
4 PRK12358 putative 6-phosphoglu 99.5 2.3E-14 5E-19 95.7 5.2 51 5-55 187-237 (239)
5 TIGR01198 pgl 6-phosphoglucono 99.5 5E-14 1.1E-18 93.9 5.0 51 5-55 182-233 (233)
6 COG0363 NagB 6-phosphogluconol 99.5 5.9E-14 1.3E-18 94.5 4.6 52 5-56 186-237 (238)
7 PLN02360 probable 6-phosphoglu 99.4 4E-13 8.8E-18 91.1 5.0 53 5-57 206-263 (268)
8 PRK02122 glucosamine-6-phospha 99.3 1.6E-12 3.4E-17 97.4 4.9 53 5-57 224-276 (652)
9 cd01399 GlcN6P_deaminase GlcN6 99.3 3.7E-12 8.1E-17 83.2 4.8 51 5-55 182-232 (232)
10 PRK09762 galactosamine-6-phosp 99.2 7.8E-12 1.7E-16 83.4 3.8 45 5-49 188-232 (232)
11 KOG3148|consensus 99.2 3.4E-12 7.4E-17 85.4 2.0 63 2-66 196-258 (273)
12 cd00458 SugarP_isomerase Sugar 99.2 4.2E-11 9E-16 76.4 4.0 43 5-47 127-169 (169)
13 KOG3147|consensus 99.0 7.6E-10 1.7E-14 75.4 4.7 52 5-57 198-250 (252)
14 cd01400 6PGL 6PGL: 6-Phosphogl 98.9 2.6E-09 5.6E-14 70.5 4.2 43 5-47 176-219 (219)
15 PF01182 Glucosamine_iso: Gluc 96.7 0.0017 3.7E-08 42.3 3.0 21 5-25 179-199 (199)
16 PF04198 Sugar-bind: Putative 88.9 1.4 3E-05 29.7 5.1 38 5-55 216-253 (255)
17 PRK15418 transcriptional regul 86.4 1.7 3.8E-05 30.4 4.5 38 6-56 277-314 (318)
18 COG2390 DeoR Transcriptional r 83.6 2.4 5.2E-05 30.0 4.2 38 6-56 280-317 (321)
19 PF02456 Adeno_IVa2: Adenoviru 69.0 5.4 0.00012 29.0 2.7 30 11-48 95-124 (369)
20 PF10078 DUF2316: Uncharacteri 56.3 8.6 0.00019 22.6 1.6 19 30-48 71-89 (89)
21 PF11019 DUF2608: Protein of u 44.5 39 0.00085 22.9 3.5 34 8-51 155-188 (252)
22 COG2984 ABC-type uncharacteriz 42.2 39 0.00085 24.2 3.3 41 13-56 266-306 (322)
23 PF05049 IIGP: Interferon-indu 39.4 49 0.0011 24.1 3.5 53 12-65 44-109 (376)
24 PF10959 DUF2761: Protein of u 39.4 13 0.00028 21.8 0.5 33 33-65 3-36 (95)
25 PF14189 DUF4312: Domain of un 37.8 50 0.0011 19.3 2.8 36 6-41 5-43 (85)
26 PRK11244 phnP carbon-phosphoru 36.1 73 0.0016 20.8 3.7 45 6-50 2-54 (250)
27 COG3596 Predicted GTPase [Gene 36.1 38 0.00083 24.1 2.5 47 8-54 44-99 (296)
28 KOG4748|consensus 34.6 35 0.00077 24.9 2.2 14 40-53 175-188 (364)
29 PF04392 ABC_sub_bind: ABC tra 32.2 70 0.0015 21.5 3.2 43 13-57 238-280 (294)
30 cd04103 Centaurin_gamma Centau 31.3 84 0.0018 19.0 3.3 24 6-29 2-26 (158)
31 TIGR01911 HesB_rel_seleno HesB 30.8 27 0.00058 20.2 0.9 25 41-65 59-83 (92)
32 COG4367 Uncharacterized protei 30.7 68 0.0015 19.1 2.6 21 30-50 70-90 (97)
33 cd04122 Rab14 Rab14 subfamily. 30.0 92 0.002 18.5 3.3 28 7-34 5-33 (166)
34 cd04146 RERG_RasL11_like RERG/ 28.6 77 0.0017 18.7 2.7 22 7-28 2-24 (165)
35 PF13737 DDE_Tnp_1_5: Transpos 28.4 50 0.0011 20.0 1.9 17 39-55 2-18 (112)
36 PF13587 DJ-1_PfpI_N: N-termin 28.3 35 0.00077 16.7 1.0 12 5-16 1-12 (38)
37 PF10767 DUF2593: Protein of u 28.1 63 0.0014 20.7 2.3 21 8-28 102-122 (144)
38 PF11112 PyocinActivator: Pyoc 26.6 83 0.0018 17.7 2.4 35 13-49 27-61 (76)
39 cd04140 ARHI_like ARHI subfami 25.3 1.3E+02 0.0027 17.9 3.3 23 6-28 3-26 (165)
40 TIGR03578 EF_0831 conserved hy 25.1 1E+02 0.0022 18.4 2.7 36 6-41 7-45 (96)
41 PF14826 FACT-Spt16_Nlob: FACT 23.4 2E+02 0.0044 18.2 4.5 44 7-53 30-81 (163)
42 PF05637 Glyco_transf_34: gala 22.7 73 0.0016 21.3 2.0 12 41-52 77-88 (239)
43 TIGR01997 sufA_proteo FeS asse 22.2 51 0.0011 19.2 1.0 25 40-64 57-81 (107)
44 PF01935 DUF87: Domain of unkn 22.0 70 0.0015 20.4 1.7 37 7-43 27-64 (229)
45 PF06832 BiPBP_C: Penicillin-B 21.6 71 0.0015 17.7 1.5 21 32-52 34-54 (89)
46 PRK05057 aroK shikimate kinase 21.4 1.3E+02 0.0028 18.8 2.8 25 1-25 1-26 (172)
47 PRK14738 gmk guanylate kinase; 21.2 2.3E+02 0.0049 18.1 4.0 44 11-54 21-71 (206)
48 TIGR02689 ars_reduc_gluta arse 20.9 1.4E+02 0.003 17.6 2.8 19 6-24 2-20 (126)
49 cd04117 Rab15 Rab15 subfamily. 20.7 1.9E+02 0.0042 17.1 3.4 23 7-29 3-26 (161)
50 cd04150 Arf1_5_like Arf1-Arf5- 20.1 2.1E+02 0.0045 17.0 5.3 27 7-33 3-30 (159)
No 1
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=99.60 E-value=1.7e-15 Score=101.97 Aligned_cols=62 Identities=61% Similarity=1.016 Sum_probs=57.9
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhHhhHHhhhhC
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFKRL 66 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~~~~~y~~~~ 66 (66)
++|+++++|++|+++++++++++.+..+|+++++.|++++||+|++|++.+..++.+|++++
T Consensus 197 ~~vi~~~~G~~Ka~al~~al~~~~~~~~Pas~l~~~~~~~~~~d~~Aa~~l~~~~~~~~~~~ 258 (259)
T TIGR00502 197 KEVLILVSGHQKALALQKAVEGGVNHMWTISALQLHKHAIVVCDENATQELKVKTVEYFNEL 258 (259)
T ss_pred CEEEEEEcCHHHHHHHHHHHcCCCCCccchHHhccCCCEEEEEcHHHHhhhhHHHHHHhhcc
Confidence 45999999999999999999998877899999999999999999999999999999999864
No 2
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=99.57 E-value=4.5e-15 Score=98.94 Aligned_cols=62 Identities=48% Similarity=0.750 Sum_probs=57.9
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhHhhHHhhhhC
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFKRL 66 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~~~~~y~~~~ 66 (66)
++++++++|++|+++++.++.|+.++.+|+++++.|++++||+|++|++.|+.++..||.++
T Consensus 197 ~~vi~~a~G~~K~~ai~~al~~~~~~~~Pa~~l~~~~~~~~~~d~~aa~~l~~~~~~~~~~~ 258 (261)
T PRK00443 197 KEIMLLAPGHNKAEAVKAAVEGPVNHMWPASILQLHPKATLVLDEAAASELKVKTVKYFTEL 258 (261)
T ss_pred CeEEEEecChHHHHHHHHHHhCCCCCCcchHHHhhCCCEEEEEcHHHHhHHHHHHHHHhhhc
Confidence 34999999999999999999998878899999999999999999999999999999999764
No 3
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=99.56 E-value=4.4e-15 Score=99.76 Aligned_cols=56 Identities=50% Similarity=0.732 Sum_probs=51.4
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhHhhH
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTV 60 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~~~~ 60 (66)
++|+|+++|++|+++|+++++++.+..+|+++++.|++++||+|++|++.|..+|.
T Consensus 197 ~~i~l~~~G~~K~~~l~~~l~~~~~~~~Pas~l~~~~~~~~~~D~~Aa~~l~~~~~ 252 (253)
T PTZ00285 197 REVLLLATGASKAIAVARCVEGGVTHMCPASALQMHPAAVLCLDEDATLELKVKTT 252 (253)
T ss_pred CEEEEEecCHHHHHHHHHHhcCCCCCccchHHhccCCCEEEEEcHHHHhhhhhccc
Confidence 34999999999999999999987777899999999999999999999999987764
No 4
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=99.51 E-value=2.3e-14 Score=95.69 Aligned_cols=51 Identities=31% Similarity=0.423 Sum_probs=47.9
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
++|+|+++|++|+++|++++++++++++|+|+++.|++++||+|++|++.|
T Consensus 187 ~~i~ll~~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~aa~~l 237 (239)
T PRK12358 187 KNLLLIVNGKGKAQILKKVLQGPVTEDVPASILQLHPNLTVILDEAAAAEL 237 (239)
T ss_pred CEEEEEEeCHHHHHHHHHHHcCCCCCCcCcHHhccCCCEEEEECHHHHhhc
Confidence 459999999999999999999988889999999999999999999999876
No 5
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=99.48 E-value=5e-14 Score=93.89 Aligned_cols=51 Identities=25% Similarity=0.247 Sum_probs=46.0
Q ss_pred cEEEEEEcChhHHHHHHHHHh-cCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIE-EGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~-~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
++|+|+++|++|+++++++++ ++.+..+|++.++.|++++||+|++|++.|
T Consensus 182 ~~i~~lv~G~~Ka~~~~~~l~~~~~~~~~Pas~l~~~~~~~~~~D~~Aa~~l 233 (233)
T TIGR01198 182 RKVFLLIAGEEKRNALAEALAVEAEPYPLPAAGVLHSGKTLWLLDYAAARKL 233 (233)
T ss_pred CeEEEEEEChHHHHHHHHHHhcCCCcccCCHhHcCCCCcEEEEEChHhhhcC
Confidence 459999999999999999998 566668999999999999999999998754
No 6
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=5.9e-14 Score=94.50 Aligned_cols=52 Identities=37% Similarity=0.533 Sum_probs=48.8
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 56 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~ 56 (66)
++|+|+|+|++|+++++++++|+++..||++.++.|++++||+|++|++.|.
T Consensus 186 k~v~llv~G~~Ka~al~~~l~~~~~~~~Pas~l~~~~~~~~~~d~~A~~~l~ 237 (238)
T COG0363 186 KEVLLLVTGEEKADALKQALEGPVTELYPASILQLHPNVTWFLDEEAASLLK 237 (238)
T ss_pred CeEEEEEcCchHHHHHHHHhcCCCcccccHHHHhcCCCeEEEEchHHhhhcc
Confidence 4599999999999999999999998889999999999999999999999774
No 7
>PLN02360 probable 6-phosphogluconolactonase
Probab=99.40 E-value=4e-13 Score=91.12 Aligned_cols=53 Identities=23% Similarity=0.132 Sum_probs=46.9
Q ss_pred cEEEEEEcChhHHHHHHHHHh----cCCccccccceeeecC-cEEEEEeHHHhhhhhH
Q psy2121 5 LMVMILITGSHKAFALYKAIE----EGVNHMWTVSAFQMHP-CTIMICDEDATQELRV 57 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~----~~~~~~~Pas~l~~h~-~~~~~lD~~Aa~~l~~ 57 (66)
++|+|+++|++|+++|++++. ++.+..+|++.++.|+ +++||+|++|++.|.+
T Consensus 206 ~~i~llv~G~~Ka~al~~~l~~~~~~~~~~~~Pas~l~~~~~~~~w~~D~~Aa~~l~~ 263 (268)
T PLN02360 206 SNVAVVATGESKANAVHLAIDDVTEGPDAPSLPARMVQPTKGKLVWFLDKPAASKLDG 263 (268)
T ss_pred CeEEEEEeCccHHHHHHHHHhhccCCCCcccCChhhhcCCCCcEEEEECHHHHhhCcc
Confidence 459999999999999999995 5555689999999985 9999999999998864
No 8
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=99.33 E-value=1.6e-12 Score=97.37 Aligned_cols=53 Identities=28% Similarity=0.353 Sum_probs=49.7
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhH
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRV 57 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~ 57 (66)
++|+|+++|++|+++|+++++|+++..+|||+++.|++++||+|++||+.|++
T Consensus 224 r~Iilla~G~~Ka~iv~~~l~g~~~~~~PAs~Lq~h~~~~~~lD~~AA~~Ltr 276 (652)
T PRK02122 224 RRIVLLAWGEHKAPIIKRAVEGEISDEVPASYLQEHPNATFVLDLAAASELTR 276 (652)
T ss_pred CeEEEEEeCHHHHHHHHHHHhCCCCCccchHHhccCCCEEEEEcHHHhhhccc
Confidence 34999999999999999999998888899999999999999999999999875
No 9
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=99.30 E-value=3.7e-12 Score=83.17 Aligned_cols=51 Identities=39% Similarity=0.482 Sum_probs=47.0
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
++++++++|++|+++++.++.++.+..+|++.++.|++++||+|++|++.|
T Consensus 182 ~~vi~~a~G~~K~~ai~~al~~~~~~~~P~~~l~~~~~~~~~~d~~aa~~~ 232 (232)
T cd01399 182 KEILLLATGEGKAEAVKKALEGPVTEECPASILQLHPNVTVILDEAAASEL 232 (232)
T ss_pred CEEEEEeCChHHHHHHHHHHhCCCCCCcchHHHhhCCCeEEEEcHHHhccC
Confidence 359999999999999999999988778999999999999999999998754
No 10
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=99.23 E-value=7.8e-12 Score=83.38 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=42.1
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeH
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDE 49 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~ 49 (66)
++|+|+++|++|+++++++++++++..+|+|+++.|+|+++++|+
T Consensus 188 ~~i~llv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~d~ 232 (232)
T PRK09762 188 REVLLLVTGEGKQDATERFLTAKVSTAIPASFLWLHSNFICLIDR 232 (232)
T ss_pred CEEEEEEeCHHHHHHHHHHHcCCCCCcccHHHHhhCCCEEEEecC
Confidence 449999999999999999999988788999999999999999995
No 11
>KOG3148|consensus
Probab=99.23 E-value=3.4e-12 Score=85.37 Aligned_cols=63 Identities=86% Similarity=1.269 Sum_probs=59.7
Q ss_pred CcccEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhHhhHHhhhhC
Q psy2121 2 SRELMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFKRL 66 (66)
Q Consensus 2 ~r~~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~~~~~y~~~~ 66 (66)
||+ |+++++|+.||-++.+.++..++.+|..|..|+|+++++++|++|.-+|..+|++||+.+
T Consensus 196 are--vmilitgahkafalykaieegvnhmwtvsafqqh~~t~ficdedatlelkvktvkyfkgl 258 (273)
T KOG3148|consen 196 ARE--VMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTTFICDEDATLELKVKTVKYFKGL 258 (273)
T ss_pred cce--EEEEEeccHHHHHHHHHHHhcccceeehhhHhhCCceEEEecCCceeEEEeeehHHHHHH
Confidence 577 999999999999999999999999999999999999999999999999999999999863
No 12
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=99.15 E-value=4.2e-11 Score=76.43 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=39.6
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEE
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMIC 47 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~l 47 (66)
++++|+++|++|+++|+++++|+.+.++|++.++.|++++||+
T Consensus 127 ~~i~~~~~G~~Ka~~l~~~~~~~~~~~~Pas~l~~~~~~~~~~ 169 (169)
T cd00458 127 GTVIVLVDGRKKVDYLCQNTEPGVIENGIFADIRGKEKDIVIV 169 (169)
T ss_pred cEEEEEecChhHHHHHHHHhcCCCCCcCCHHHhccCCCeEEeC
Confidence 3499999999999999999998877789999999999999985
No 13
>KOG3147|consensus
Probab=98.98 E-value=7.6e-10 Score=75.36 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=45.5
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeee-cCcEEEEEeHHHhhhhhH
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQM-HPCTIMICDEDATQELRV 57 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~-h~~~~~~lD~~Aa~~l~~ 57 (66)
++|+|+|+|+.||++++.+++... ..+|++++++ .++++||+|++|++.++.
T Consensus 198 ~~v~fvv~G~~Ka~iv~~i~~~~~-~~lPaa~V~~~~~~l~WflD~~A~~~l~~ 250 (252)
T KOG3147|consen 198 KNVAFVVCGASKAEIVKAILEDKE-KKLPAALVNPAKGKLVWFLDDDAASKLPV 250 (252)
T ss_pred hceEEEEeCcchhHhHHHHHhccc-ccCCchheeccCCeEEEEEchHHhcCCCC
Confidence 349999999999999999998654 4699999996 578999999999998863
No 14
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=98.87 E-value=2.6e-09 Score=70.53 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=38.7
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeec-CcEEEEE
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMH-PCTIMIC 47 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h-~~~~~~l 47 (66)
++|+|+++|++|+++++++++++++.++|+++++.| .+++||.
T Consensus 176 ~~i~ll~~G~~K~~~l~~~l~~~~~~~~Pas~l~~~~~~~~w~~ 219 (219)
T cd01400 176 RRVVFLVTGAEKAEALKRALAGPDPEELPAARVLPRPGEVLWFL 219 (219)
T ss_pred CeEEEEEeChhHHHHHHHHHcCCCCCCCChhhhcCCCCcEEEeC
Confidence 459999999999999999999987778999999998 6788974
No 15
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=96.72 E-value=0.0017 Score=42.27 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.5
Q ss_pred cEEEEEEcChhHHHHHHHHHh
Q psy2121 5 LMVMILITGSHKAFALYKAIE 25 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~ 25 (66)
++|+|+++|++|+++|+++++
T Consensus 179 ~~i~~l~~G~~Ka~~v~~~l~ 199 (199)
T PF01182_consen 179 RKIVLLATGEEKAEAVKRALQ 199 (199)
T ss_dssp SEEEEEEESGGGHHHHHHHH-
T ss_pred CEEEEEEeCHHHHHHHHHHhC
Confidence 459999999999999999884
No 16
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=88.90 E-value=1.4 Score=29.74 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=29.4
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
.+++.++.|..|++++..++.+..- .++++|++.|..+
T Consensus 216 ~~~I~va~G~~K~~aI~aALr~g~i-------------~~LItDe~tA~~l 253 (255)
T PF04198_consen 216 PRVIAVAGGEEKAEAILAALRGGYI-------------NVLITDESTARAL 253 (255)
T ss_dssp SEEEEEE-SGGGHHHHHHHHHTTST-------------SEEEEEHHHHHHH
T ss_pred CcEEEEcCchhhHHHHHHHHhcCCC-------------CEEEECHHHHHHH
Confidence 4599999999999999999987531 2367898888765
No 17
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=86.41 E-value=1.7 Score=30.35 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=30.5
Q ss_pred EEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhh
Q psy2121 6 MVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 56 (66)
Q Consensus 6 ~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~ 56 (66)
+++.++.|.+|++++..++.|..- ..+++|++.|..+.
T Consensus 277 ~~I~vA~G~~K~~Ai~aALrgg~i-------------~~LITDe~tA~~lL 314 (318)
T PRK15418 277 TVIGVAGGEEKAEAIIAALKGGYI-------------NALVTDEKTARAIL 314 (318)
T ss_pred CEEEEecCHHHHHHHHHHHhcCCC-------------CEEEECHHHHHHHH
Confidence 489999999999999999987531 23678999887764
No 18
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=83.64 E-value=2.4 Score=30.02 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=30.6
Q ss_pred EEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhh
Q psy2121 6 MVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 56 (66)
Q Consensus 6 ~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~ 56 (66)
+++.++.|+.|++++..+|.|.. ...+++|+..|..+-
T Consensus 280 ~vI~vAgG~~K~~AI~aaL~gg~-------------~n~LITDe~tA~~lL 317 (321)
T COG2390 280 KVIAVAGGESKAEAILAALRGGY-------------INVLITDEATAEALL 317 (321)
T ss_pred cEEEEeCCcccHHHHHHHHhCCC-------------CCEEEeCHHHHHHHH
Confidence 49999999999999999998753 134778998887664
No 19
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=69.04 E-value=5.4 Score=28.96 Aligned_cols=30 Identities=30% Similarity=0.230 Sum_probs=23.4
Q ss_pred EcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEe
Q psy2121 11 ITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICD 48 (66)
Q Consensus 11 v~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD 48 (66)
-||.+|.+.+++++.+. ++++-|++++|+.
T Consensus 95 PTG~GKSqLlRNLis~~--------lI~P~PETVfFIt 124 (369)
T PF02456_consen 95 PTGSGKSQLLRNLISCQ--------LIQPPPETVFFIT 124 (369)
T ss_pred CCCCCHHHHHHHhhhcC--------cccCCCCceEEEC
Confidence 48999999999998753 5677777777764
No 20
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=56.34 E-value=8.6 Score=22.65 Aligned_cols=19 Identities=16% Similarity=0.154 Sum_probs=16.4
Q ss_pred cccccceeeecCcEEEEEe
Q psy2121 30 HMWTVSAFQMHPCTIMICD 48 (66)
Q Consensus 30 ~~~Pas~l~~h~~~~~~lD 48 (66)
+.+|-|.|.+++.=.||+|
T Consensus 71 eP~PfS~L~g~~~~yWFl~ 89 (89)
T PF10078_consen 71 EPVPFSALKGDPADYWFLN 89 (89)
T ss_pred CCCCeeeeCCCcccccCCC
Confidence 4599999999998899976
No 21
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=44.55 E-value=39 Score=22.87 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=26.1
Q ss_pred EEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHH
Q psy2121 8 MILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDA 51 (66)
Q Consensus 8 ~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~A 51 (66)
+|.+.|.+|.+++...|.. +..+++-++|+|...
T Consensus 155 Ilft~~~~KG~~L~~fL~~----------~~~~pk~IIfIDD~~ 188 (252)
T PF11019_consen 155 ILFTGGQDKGEVLKYFLDK----------INQSPKKIIFIDDNK 188 (252)
T ss_pred eEEeCCCccHHHHHHHHHH----------cCCCCCeEEEEeCCH
Confidence 6789999999999999964 234566778888754
No 22
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=42.18 E-value=39 Score=24.25 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=32.4
Q ss_pred ChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhh
Q psy2121 13 GSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 56 (66)
Q Consensus 13 G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~ 56 (66)
|..-+.++.++|.|..+.++|.+.... ...++.+.++..+.
T Consensus 266 G~qtg~~v~~ILkG~~p~dip~~~~~~---~~~~iN~~aa~~lG 306 (322)
T COG2984 266 GKQTGEMVVKILKGKKPKDIPVSVAAG---FKLVINLKAAKKLG 306 (322)
T ss_pred HHHHHHHHHHHHcCCCccccCcccccc---ceEEEcHHHHHHhC
Confidence 445567899999998877899887665 66888999988764
No 23
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=39.42 E-value=49 Score=24.09 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=28.6
Q ss_pred cChhHHHHHHHHHh--cC----------Cccccccceeee-cCcEEEEEeHHHhhhhhHhhHHhhhh
Q psy2121 12 TGSHKAFALYKAIE--EG----------VNHMWTVSAFQM-HPCTIMICDEDATQELRVKTVKYFKR 65 (66)
Q Consensus 12 ~G~~Ka~al~~~l~--~~----------~~~~~Pas~l~~-h~~~~~~lD~~Aa~~l~~~~~~y~~~ 65 (66)
+|.+|...+-.+.. .+ .+++-|..+-.+ ++|++++ |-.-.+......-+|+.+
T Consensus 44 sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lW-DlPG~gt~~f~~~~Yl~~ 109 (376)
T PF05049_consen 44 SGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLW-DLPGIGTPNFPPEEYLKE 109 (376)
T ss_dssp TTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEE-EE--GGGSS--HHHHHHH
T ss_pred CCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEE-eCCCCCCCCCCHHHHHHH
Confidence 78899998877642 11 112344445444 5788777 877666555566677654
No 24
>PF10959 DUF2761: Protein of unknown function (DUF2761); InterPro: IPR024249 Members of this family of proteins are annotated as KleF [,]. Their function is known.
Probab=39.36 E-value=13 Score=21.80 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=23.2
Q ss_pred ccceeee-cCcEEEEEeHHHhhhhhHhhHHhhhh
Q psy2121 33 TVSAFQM-HPCTIMICDEDATQELRVKTVKYFKR 65 (66)
Q Consensus 33 Pas~l~~-h~~~~~~lD~~Aa~~l~~~~~~y~~~ 65 (66)
|--++-+ .+++-+++-+-|.+.|+.....||.+
T Consensus 3 ~pgfv~p~tgrvavlvr~ya~sdlngdapaywys 36 (95)
T PF10959_consen 3 PPGFVCPTTGRVAVLVREYADSDLNGDAPAYWYS 36 (95)
T ss_pred CCccccCCCCeEEEEehhhhccccCCCCcceeec
Confidence 3344454 36788888888888888877777754
No 25
>PF14189 DUF4312: Domain of unknown function (DUF4312)
Probab=37.82 E-value=50 Score=19.32 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=24.4
Q ss_pred EEEEEEcChhHHHHHHHHHhc---CCccccccceeeecC
Q psy2121 6 MVMILITGSHKAFALYKAIEE---GVNHMWTVSAFQMHP 41 (66)
Q Consensus 6 ~v~~lv~G~~Ka~al~~~l~~---~~~~~~Pas~l~~h~ 41 (66)
.+.+-..|+.|++|+.++|.. ..-.+.|--+++-.|
T Consensus 5 tv~vsGkG~tKe~Afa~als~vq~~v~~~~~~vlLrIEP 43 (85)
T PF14189_consen 5 TVTVSGKGETKEEAFAKALSQVQKTVLKETNGVLLRIEP 43 (85)
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhcCCCcEEEEcC
Confidence 466777899999999999963 222235555666555
No 26
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=36.07 E-value=73 Score=20.84 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=28.8
Q ss_pred EEEEEEcChh--------HHHHHHHHHhcCCccccccceeeecCcEEEEEeHH
Q psy2121 6 MVMILITGSH--------KAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDED 50 (66)
Q Consensus 6 ~v~~lv~G~~--------Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~ 50 (66)
++.||-||.. +...=+.+.+-+.....+++.+-..++..|++|-.
T Consensus 2 ~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G 54 (250)
T PRK11244 2 RLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAG 54 (250)
T ss_pred EEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECC
Confidence 4778888888 44444454543333557777765555567889975
No 27
>COG3596 Predicted GTPase [General function prediction only]
Probab=36.06 E-value=38 Score=24.07 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=31.0
Q ss_pred EEEEcChhHHHHHHHHHhcCCcc--ccccc-------eeeecCcEEEEEeHHHhhh
Q psy2121 8 MILITGSHKAFALYKAIEEGVNH--MWTVS-------AFQMHPCTIMICDEDATQE 54 (66)
Q Consensus 8 ~~lv~G~~Ka~al~~~l~~~~~~--~~Pas-------~l~~h~~~~~~lD~~Aa~~ 54 (66)
++=.||.+|...+-.+|.|+..+ .+|+. ....|++...+.|-.--..
T Consensus 44 i~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gd 99 (296)
T COG3596 44 LMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGD 99 (296)
T ss_pred EecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCccc
Confidence 34469999999999999765432 34533 2345777777777654443
No 28
>KOG4748|consensus
Probab=34.63 E-value=35 Score=24.87 Aligned_cols=14 Identities=29% Similarity=0.102 Sum_probs=11.0
Q ss_pred cCcEEEEEeHHHhh
Q psy2121 40 HPCTIMICDEDATQ 53 (66)
Q Consensus 40 h~~~~~~lD~~Aa~ 53 (66)
+.+.+|++|++|--
T Consensus 175 ~AeWIWWlD~DAli 188 (364)
T KOG4748|consen 175 DAEWIWWLDQDALI 188 (364)
T ss_pred CCcEEEEecccchh
Confidence 45689999999853
No 29
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=32.24 E-value=70 Score=21.46 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=26.4
Q ss_pred ChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhH
Q psy2121 13 GSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRV 57 (66)
Q Consensus 13 G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~ 57 (66)
|..=++.+.++|+|....++|...... + ..++++...|..+.-
T Consensus 238 G~~Aa~~a~~IL~G~~~~~ipv~~~~~-~-~~~~iN~~~a~~lgi 280 (294)
T PF04392_consen 238 GRQAAEMAVRILKGEKPSDIPVERPSK-G-FEIIINLKTARKLGI 280 (294)
T ss_dssp HHHHHHHHHHHCTT--GGGS--EEE------EEEEEHHHHHHCT-
T ss_pred HHHHHHHHHHHHCCCCcccCCccccCC-C-cEEEEcHHHHHHcCC
Confidence 555577889999998766788754322 1 779999999988754
No 30
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=31.28 E-value=84 Score=19.00 Aligned_cols=24 Identities=13% Similarity=-0.021 Sum_probs=18.3
Q ss_pred EEEEE-EcChhHHHHHHHHHhcCCc
Q psy2121 6 MVMIL-ITGSHKAFALYKAIEEGVN 29 (66)
Q Consensus 6 ~v~~l-v~G~~Ka~al~~~l~~~~~ 29 (66)
+|+++ -.|.+|...+.+.+.+...
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~ 26 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV 26 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC
Confidence 35555 6799999999999877543
No 31
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=30.75 E-value=27 Score=20.16 Aligned_cols=25 Identities=4% Similarity=0.069 Sum_probs=19.0
Q ss_pred CcEEEEEeHHHhhhhhHhhHHhhhh
Q psy2121 41 PCTIMICDEDATQELRVKTVKYFKR 65 (66)
Q Consensus 41 ~~~~~~lD~~Aa~~l~~~~~~y~~~ 65 (66)
..+.+++|..+...|...+.+|..+
T Consensus 59 ~gv~v~vD~~s~~~l~G~~iDy~~~ 83 (92)
T TIGR01911 59 HDLTFLIDKNLIDQFGGFSIECAEE 83 (92)
T ss_pred CCEEEEECHHHHHHhCCCEEEEecC
Confidence 4588999999998887767666543
No 32
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.74 E-value=68 Score=19.13 Aligned_cols=21 Identities=5% Similarity=-0.156 Sum_probs=16.3
Q ss_pred cccccceeeecCcEEEEEeHH
Q psy2121 30 HMWTVSAFQMHPCTIMICDED 50 (66)
Q Consensus 30 ~~~Pas~l~~h~~~~~~lD~~ 50 (66)
+..|-+.+.+...=.||+|-.
T Consensus 70 tP~PfT~Lsgdk~~yWFl~~~ 90 (97)
T COG4367 70 TPVPFTALSGDKHQYWFLSWT 90 (97)
T ss_pred CCCCeeeecCccccceeeccc
Confidence 458999999876678998753
No 33
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=30.04 E-value=92 Score=18.47 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=20.2
Q ss_pred EEEE-EcChhHHHHHHHHHhcCCcccccc
Q psy2121 7 VMIL-ITGSHKAFALYKAIEEGVNHMWTV 34 (66)
Q Consensus 7 v~~l-v~G~~Ka~al~~~l~~~~~~~~Pa 34 (66)
|+++ -.|.||...+.+...+...+.+|-
T Consensus 5 i~iiG~~~vGKTsli~~~~~~~~~~~~~~ 33 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEKKFMADCPH 33 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCc
Confidence 4444 578899999999998765444443
No 34
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=28.62 E-value=77 Score=18.74 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=16.2
Q ss_pred EEEEE-cChhHHHHHHHHHhcCC
Q psy2121 7 VMILI-TGSHKAFALYKAIEEGV 28 (66)
Q Consensus 7 v~~lv-~G~~Ka~al~~~l~~~~ 28 (66)
|+++. +|.+|...+.+.+.+..
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~ 24 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRF 24 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCcc
Confidence 44444 78999999998886543
No 35
>PF13737 DDE_Tnp_1_5: Transposase DDE domain
Probab=28.38 E-value=50 Score=20.01 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=13.8
Q ss_pred ecCcEEEEEeHHHhhhh
Q psy2121 39 MHPCTIMICDEDATQEL 55 (66)
Q Consensus 39 ~h~~~~~~lD~~Aa~~l 55 (66)
..|++++++|++|.+.+
T Consensus 2 ~RGslt~Wid~~~i~~W 18 (112)
T PF13737_consen 2 RRGSLTFWIDEDAIAQW 18 (112)
T ss_pred CcccEEEEECHHHHhhh
Confidence 46789999999997766
No 36
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=28.34 E-value=35 Score=16.73 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=5.5
Q ss_pred cEEEEEEcChhH
Q psy2121 5 LMVMILITGSHK 16 (66)
Q Consensus 5 ~~v~~lv~G~~K 16 (66)
++|++++|..++
T Consensus 1 kkiLiV~Ts~~~ 12 (38)
T PF13587_consen 1 KKILIVVTSHDK 12 (38)
T ss_dssp SEEEEEE---SE
T ss_pred CeEEEEEcCccc
Confidence 357777776553
No 37
>PF10767 DUF2593: Protein of unknown function (DUF2593); InterPro: IPR019703 This entry represents proteins that appear to be restricted to Enterobacteriaceae. Some members are annotated as YbjO, however there is currently no known function.
Probab=28.06 E-value=63 Score=20.69 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=18.3
Q ss_pred EEEEcChhHHHHHHHHHhcCC
Q psy2121 8 MILITGSHKAFALYKAIEEGV 28 (66)
Q Consensus 8 ~~lv~G~~Ka~al~~~l~~~~ 28 (66)
+|-+.|++++++++..+-++.
T Consensus 102 iFsi~Ge~~~eIlh~LllQKl 122 (144)
T PF10767_consen 102 IFSIEGESGREILHSLLLQKL 122 (144)
T ss_pred eEEEcCCChHHHHHHHHHhhc
Confidence 688999999999999987654
No 38
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=26.63 E-value=83 Score=17.74 Aligned_cols=35 Identities=11% Similarity=-0.124 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeH
Q psy2121 13 GSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDE 49 (66)
Q Consensus 13 G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~ 49 (66)
|-....+.+++-.|+.+ +|...+......-|+++=
T Consensus 27 ~lt~~~a~rk~~~g~lp--lPv~rl~~SqKs~~~V~v 61 (76)
T PF11112_consen 27 HLTPKTAKRKANAGELP--LPVFRLDDSQKSPKFVHV 61 (76)
T ss_pred cCCHHHHHHHHHCCCCC--CceeecCCcccCCceeeH
Confidence 55677888888888864 888777655556677653
No 39
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=25.27 E-value=1.3e+02 Score=17.89 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=18.1
Q ss_pred EEEEE-EcChhHHHHHHHHHhcCC
Q psy2121 6 MVMIL-ITGSHKAFALYKAIEEGV 28 (66)
Q Consensus 6 ~v~~l-v~G~~Ka~al~~~l~~~~ 28 (66)
+|+++ -+|.+|...+.+.+.+..
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f 26 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTF 26 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 35555 689999999999998764
No 40
>TIGR03578 EF_0831 conserved hypothetical protein EF_0831/AHA_3912. Members of this family of small (about 100 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=25.14 E-value=1e+02 Score=18.44 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=23.5
Q ss_pred EEEEEEcChhHHHHHHHHHhcC---CccccccceeeecC
Q psy2121 6 MVMILITGSHKAFALYKAIEEG---VNHMWTVSAFQMHP 41 (66)
Q Consensus 6 ~v~~lv~G~~Ka~al~~~l~~~---~~~~~Pas~l~~h~ 41 (66)
.+.+-.-|..|++|+..+|..= .-.+.+--+++-.|
T Consensus 7 tv~VsgkG~tK~~Afa~als~iq~~v~~~~~~illRIEP 45 (96)
T TIGR03578 7 TVIVSGKGNTKQLAFASALSKIQKKVMKENPAVLLRIEP 45 (96)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 4666778889999999988631 11234555666655
No 41
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=23.43 E-value=2e+02 Score=18.16 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=24.8
Q ss_pred EEEEEcCh-------hHHHHHHHHHhcCCccccccceee-ecCcEEEEEeHHHhh
Q psy2121 7 VMILITGS-------HKAFALYKAIEEGVNHMWTVSAFQ-MHPCTIMICDEDATQ 53 (66)
Q Consensus 7 v~~lv~G~-------~Ka~al~~~l~~~~~~~~Pas~l~-~h~~~~~~lD~~Aa~ 53 (66)
.+++++|. .|..+++..|-|= ++|.|++- ....++++..+-=+.
T Consensus 30 al~i~~G~~~e~~~Y~Ks~aLq~WLlGY---EfpdTiiv~tk~~i~~ltS~KKa~ 81 (163)
T PF14826_consen 30 ALVIAVGKADEDNPYSKSTALQTWLLGY---EFPDTIIVFTKKKIHFLTSKKKAK 81 (163)
T ss_dssp EEEEEE-S--TTSTT-HHHHHHHHHHSS-----SSEEEEEETTEEEEEEEHHHHH
T ss_pred EEEEEeCCcccCccchhHHHHHHHHhcc---cHhhhhhhhcCCEEEEEeCHHHHH
Confidence 35667776 6778888888773 47777744 344555655554443
No 42
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=22.70 E-value=73 Score=21.30 Aligned_cols=12 Identities=25% Similarity=0.094 Sum_probs=7.7
Q ss_pred CcEEEEEeHHHh
Q psy2121 41 PCTIMICDEDAT 52 (66)
Q Consensus 41 ~~~~~~lD~~Aa 52 (66)
.+.+|++|.+|.
T Consensus 77 ~~wv~~lD~Dal 88 (239)
T PF05637_consen 77 AEWVWWLDSDAL 88 (239)
T ss_dssp -SEEEEE-TTEE
T ss_pred CCEEEEEcCCeE
Confidence 457888998874
No 43
>TIGR01997 sufA_proteo FeS assembly scaffold SufA. This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.
Probab=22.20 E-value=51 Score=19.19 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=18.6
Q ss_pred cCcEEEEEeHHHhhhhhHhhHHhhh
Q psy2121 40 HPCTIMICDEDATQELRVKTVKYFK 64 (66)
Q Consensus 40 h~~~~~~lD~~Aa~~l~~~~~~y~~ 64 (66)
+..+.+++|..+...|...+.+|.+
T Consensus 57 ~~g~~v~id~~s~~~l~g~~IDy~~ 81 (107)
T TIGR01997 57 HDGAKVFVAPEAVLFILGTQVDFVR 81 (107)
T ss_pred cCCEEEEEcHHHHhhhCCCEEEEEE
Confidence 4567888999988888776666644
No 44
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=21.96 E-value=70 Score=20.44 Aligned_cols=37 Identities=24% Similarity=0.134 Sum_probs=23.4
Q ss_pred EEEEEcChhHHHHHHHHHhcCC-ccccccceeeecCcE
Q psy2121 7 VMILITGSHKAFALYKAIEEGV-NHMWTVSAFQMHPCT 43 (66)
Q Consensus 7 v~~lv~G~~Ka~al~~~l~~~~-~~~~Pas~l~~h~~~ 43 (66)
-+|=.||.+|.-.++.++++-. ....+.-.+=+|++.
T Consensus 27 ~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 27 AIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGEY 64 (229)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCcc
Confidence 3455689999999888887543 333444444455554
No 45
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=21.58 E-value=71 Score=17.70 Aligned_cols=21 Identities=10% Similarity=-0.035 Sum_probs=13.2
Q ss_pred cccceeeecCcEEEEEeHHHh
Q psy2121 32 WTVSAFQMHPCTIMICDEDAT 52 (66)
Q Consensus 32 ~Pas~l~~h~~~~~~lD~~Aa 52 (66)
++.+.....+.+.||+|..-.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~ 54 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPL 54 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEc
Confidence 334433344689999997644
No 46
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=21.36 E-value=1.3e+02 Score=18.76 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=17.2
Q ss_pred CCcccEEEEEE-cChhHHHHHHHHHh
Q psy2121 1 MSRELMVMILI-TGSHKAFALYKAIE 25 (66)
Q Consensus 1 ~~r~~~v~~lv-~G~~Ka~al~~~l~ 25 (66)
|.+.+.|+++. +|++|..+.+.+-.
T Consensus 1 ~~~~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 1 MAEKRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCCCCEEEEECCCCcCHHHHHHHHHH
Confidence 44444566664 99999998776553
No 47
>PRK14738 gmk guanylate kinase; Provisional
Probab=21.16 E-value=2.3e+02 Score=18.13 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=26.3
Q ss_pred EcChhHHHHHHHHHhcCCccccccceee-------ecCcEEEEEeHHHhhh
Q psy2121 11 ITGSHKAFALYKAIEEGVNHMWTVSAFQ-------MHPCTIMICDEDATQE 54 (66)
Q Consensus 11 v~G~~Ka~al~~~l~~~~~~~~Pas~l~-------~h~~~~~~lD~~Aa~~ 54 (66)
.+|.+|..+++.+.+....-.+|.+.-. .++.-+.|+|++.-..
T Consensus 21 psG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~ 71 (206)
T PRK14738 21 PSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFRE 71 (206)
T ss_pred cCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHH
Confidence 4688899999888753322223333311 2345678888887543
No 48
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=20.87 E-value=1.4e+02 Score=17.63 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=13.4
Q ss_pred EEEEEEcChhHHHHHHHHH
Q psy2121 6 MVMILITGSHKAFALYKAI 24 (66)
Q Consensus 6 ~v~~lv~G~~Ka~al~~~l 24 (66)
+|+|+++|-.-+..+++.+
T Consensus 2 ~vlfvC~~N~cRS~mAEa~ 20 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGF 20 (126)
T ss_pred eEEEEcCCcHHHHHHHHHH
Confidence 5888888887766555444
No 49
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=20.66 E-value=1.9e+02 Score=17.13 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=17.9
Q ss_pred EEEE-EcChhHHHHHHHHHhcCCc
Q psy2121 7 VMIL-ITGSHKAFALYKAIEEGVN 29 (66)
Q Consensus 7 v~~l-v~G~~Ka~al~~~l~~~~~ 29 (66)
|+++ -.|.+|...+.+.+.+...
T Consensus 3 i~vvG~~~~GKTsli~~~~~~~~~ 26 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTDNEFH 26 (161)
T ss_pred EEEECcCCCCHHHHHHHHhcCCCC
Confidence 4555 5789999999999987653
No 50
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=20.05 E-value=2.1e+02 Score=17.00 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=19.2
Q ss_pred EEEE-EcChhHHHHHHHHHhcCCccccc
Q psy2121 7 VMIL-ITGSHKAFALYKAIEEGVNHMWT 33 (66)
Q Consensus 7 v~~l-v~G~~Ka~al~~~l~~~~~~~~P 33 (66)
|+++ -.|.+|...+.+...+......|
T Consensus 3 v~~~G~~~~GKTsli~~l~~~~~~~~~p 30 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKLGEIVTTIP 30 (159)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccCC
Confidence 5555 67889999999987776543333
Done!