Query psy2121
Match_columns 66
No_of_seqs 132 out of 1005
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 16:37:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hn6_A Glucosamine-6-phosphate 99.8 4.8E-19 1.6E-23 120.4 5.7 62 2-65 217-278 (289)
2 3ico_A 6PGL, 6-phosphogluconol 99.6 3.5E-16 1.2E-20 105.3 6.1 52 5-56 216-267 (268)
3 1ne7_A Glucosamine-6-phosphate 99.6 5.4E-16 1.8E-20 104.5 6.7 62 2-65 196-257 (289)
4 1fs5_A Glucosamine-6-phosphate 99.6 4.7E-16 1.6E-20 103.1 6.1 62 2-65 196-257 (266)
5 3eb9_A 6-phosphogluconolactona 99.6 4.3E-16 1.5E-20 104.5 5.9 53 5-57 212-265 (266)
6 3tx2_A Probable 6-phosphogluco 99.6 3.6E-16 1.2E-20 104.1 5.3 51 5-55 200-250 (251)
7 3oc6_A 6-phosphogluconolactona 99.6 4.2E-16 1.4E-20 103.7 4.8 51 5-55 198-248 (248)
8 2bkx_A Glucosamine-6-phosphate 99.6 3.5E-15 1.2E-19 97.4 5.0 51 6-56 192-242 (242)
9 3css_A 6-phosphogluconolactona 99.5 3.9E-15 1.3E-19 99.6 4.8 52 5-56 213-266 (267)
10 1y89_A DEVB protein; structura 99.5 4.8E-15 1.7E-19 97.4 5.1 51 5-55 185-237 (238)
11 2ri0_A Glucosamine-6-phosphate 99.5 7.9E-15 2.7E-19 95.4 5.1 51 5-55 184-234 (234)
12 3e15_A Glucose-6-phosphate 1-d 99.2 5.3E-12 1.8E-16 86.9 3.2 48 5-52 245-296 (312)
13 1vl1_A 6PGL, 6-phosphogluconol 99.2 1.2E-11 4.2E-16 81.5 4.9 42 5-49 191-232 (232)
14 3lwd_A 6-phosphogluconolactona 98.9 4.6E-10 1.6E-14 73.7 3.7 42 2-45 182-224 (226)
15 3nwp_A 6-phosphogluconolactona 98.9 7.9E-10 2.7E-14 72.8 3.8 39 2-42 186-224 (233)
16 3lhi_A Putative 6-phosphogluco 98.9 9.1E-10 3.1E-14 72.4 3.4 37 5-42 187-223 (232)
17 2r5f_A Transcriptional regulat 97.7 7E-05 2.4E-09 49.6 5.2 38 5-55 225-262 (264)
18 2okg_A Central glycolytic gene 97.7 6.1E-05 2.1E-09 49.7 4.9 39 5-56 214-252 (255)
19 2gnp_A Transcriptional regulat 97.6 7.8E-05 2.7E-09 49.4 5.2 40 5-57 222-261 (266)
20 2w48_A Sorbitol operon regulat 97.6 8E-05 2.7E-09 50.0 5.3 38 5-55 276-313 (315)
21 2o0m_A Transcriptional regulat 97.6 7.9E-05 2.7E-09 50.7 4.9 39 5-56 301-340 (345)
22 3nze_A Putative transcriptiona 95.8 0.02 6.8E-07 37.8 5.2 39 5-56 224-262 (267)
23 3kv1_A Transcriptional repress 95.3 0.029 9.8E-07 37.1 4.8 40 5-57 222-261 (267)
24 3efb_A Probable SOR-operon reg 94.6 0.021 7.2E-07 37.6 2.7 38 5-55 227-264 (266)
25 3lkv_A Uncharacterized conserv 50.3 20 0.00068 23.0 3.8 41 13-56 247-287 (302)
26 1u2p_A Ptpase, low molecular w 36.1 18 0.0006 21.7 1.7 18 1-18 1-18 (163)
27 3g1p_A Protein PHNP; C-P lyase 32.2 58 0.002 20.1 3.7 48 1-50 1-56 (258)
28 2fn4_A P23, RAS-related protei 31.3 70 0.0024 17.7 3.9 24 6-29 11-35 (181)
29 1z2a_A RAS-related protein RAB 29.5 67 0.0023 17.5 3.4 24 6-29 7-31 (168)
30 1upt_A ARL1, ADP-ribosylation 28.6 78 0.0027 17.4 3.8 27 3-29 6-33 (171)
31 2bov_A RAla, RAS-related prote 26.1 79 0.0027 18.1 3.4 23 7-29 17-40 (206)
32 3ohm_A Guanine nucleotide-bind 25.8 49 0.0017 22.2 2.6 21 3-23 6-27 (327)
33 1c1y_A RAS-related protein RAP 25.4 89 0.003 17.0 3.4 25 6-30 5-30 (167)
34 2qor_A Guanylate kinase; phosp 25.2 55 0.0019 19.4 2.6 25 1-25 9-34 (204)
35 1u8z_A RAS-related protein RAL 25.0 90 0.0031 16.9 3.4 24 6-29 6-30 (168)
36 4d9i_A Diaminopropionate ammon 24.8 72 0.0025 21.5 3.4 30 4-33 368-398 (398)
37 3clv_A RAB5 protein, putative; 24.1 96 0.0033 17.4 3.5 23 7-29 10-33 (208)
38 1lvg_A Guanylate kinase, GMP k 23.6 51 0.0017 19.7 2.2 25 1-25 1-26 (198)
39 3zqu_A Probable aromatic acid 23.2 95 0.0033 19.6 3.5 45 1-55 1-46 (209)
40 1e9r_A Conjugal transfer prote 23.0 81 0.0028 21.1 3.3 20 6-25 55-75 (437)
41 1ex7_A Guanylate kinase; subst 22.2 99 0.0034 18.8 3.4 49 7-55 4-61 (186)
42 2fh5_B SR-beta, signal recogni 22.0 1.1E+02 0.0037 17.8 3.5 29 6-34 9-38 (214)
No 1
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=99.76 E-value=4.8e-19 Score=120.38 Aligned_cols=62 Identities=55% Similarity=0.893 Sum_probs=58.8
Q ss_pred CcccEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhHhhHHhhhh
Q psy2121 2 SRELMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFKR 65 (66)
Q Consensus 2 ~r~~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~~~~~y~~~ 65 (66)
||+ |+|+++|++|+++|+++++|++++++|+|.++.|++++||+|++||+.|+.++++||++
T Consensus 217 Ar~--i~lla~G~~Ka~av~~~l~g~~~~~~Pas~l~~h~~~~~~lD~~Aa~~L~~~~~~y~~~ 278 (289)
T 3hn6_A 217 SQE--VLIIVNGHNKARALKHAIEKGVNHMWTISALQLHKNAIIVSDKNATYELKVGTVEYFND 278 (289)
T ss_dssp SSC--EEEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEESGGGTTSBHHHHHHHHH
T ss_pred cCe--EEEEEcChHHHHHHHHHHhCCCCcccChHHHccCCCEEEEEcHHHHccccHhHHHHHHH
Confidence 455 99999999999999999999988899999999999999999999999999999999986
No 2
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=99.63 E-value=3.5e-16 Score=105.25 Aligned_cols=52 Identities=25% Similarity=0.188 Sum_probs=49.0
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 56 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~ 56 (66)
++|+|+++|++|+++|+++++|++++++|+|+++.|++++||+|++||+.|+
T Consensus 216 r~i~ll~~G~~Ka~av~~~l~g~~~~~~Pas~l~~h~~~~~~lD~~Aa~~L~ 267 (268)
T 3ico_A 216 REVWLLVSGPGKADAVAAAIGGADPVSVPAAGAVGRQNTLWLLDRDAAAKLP 267 (268)
T ss_dssp SEEEEEECSGGGHHHHHHHHTTCCTTTSGGGGCCCSSEEEEEEEHHHHTTCC
T ss_pred ceEEEEecCCCchHHHHHHhcCCCCccccccccccccceEEEecchhhhhCC
Confidence 3499999999999999999999988899999999999999999999999875
No 3
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=99.63 E-value=5.4e-16 Score=104.50 Aligned_cols=62 Identities=84% Similarity=1.283 Sum_probs=57.4
Q ss_pred CcccEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhHhhHHhhhh
Q psy2121 2 SRELMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFKR 65 (66)
Q Consensus 2 ~r~~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~~~~~y~~~ 65 (66)
+|+ ++|+++|++|+++|+++++|+.++.+|+|+++.|++++||+|++||+.|...+++||++
T Consensus 196 a~~--vi~la~G~~Ka~ai~~al~g~~~~~~Pas~l~~h~~~~li~D~~aA~~L~~~~~~~~~~ 257 (289)
T 1ne7_A 196 ARE--VMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKG 257 (289)
T ss_dssp SSC--EEEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEEGGGGTTSBHHHHHHHHH
T ss_pred CCE--EEEEEcCHHHHHHHHHHHhCCCCccCchHHHccCCCEEEEEcHHHHhhcccchhhhhHH
Confidence 455 99999999999999999999887889999999999999999999999998878899875
No 4
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=99.62 E-value=4.7e-16 Score=103.07 Aligned_cols=62 Identities=58% Similarity=0.981 Sum_probs=57.2
Q ss_pred CcccEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhHhhHHhhhh
Q psy2121 2 SRELMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFKR 65 (66)
Q Consensus 2 ~r~~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~~~~~y~~~ 65 (66)
+|. |+++++|++|+++|+++++|+.++.+|+|+++.|++++||+|++||+.|..++.+||++
T Consensus 196 a~~--vi~va~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~li~D~~aA~~L~~~~~~~~~~ 257 (266)
T 1fs5_A 196 AEE--VMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYFNE 257 (266)
T ss_dssp SSC--EEEEECSGGGHHHHHHHHHSCCCSSSGGGGGGGCSSEEEEECSGGGTTSBHHHHHHHHH
T ss_pred CCE--EEEEecChHHHHHHHHHhcCCCCCcCChHHHccCCCEEEEEeHHHhhhcccchHHHhhh
Confidence 455 99999999999999999999887789999999999999999999999998888899874
No 5
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=99.62 E-value=4.3e-16 Score=104.47 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=46.9
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeee-cCcEEEEEeHHHhhhhhH
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQM-HPCTIMICDEDATQELRV 57 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~-h~~~~~~lD~~Aa~~l~~ 57 (66)
++|+|+++|++|+++|+++++|++++.+|||++|. |++++||+|++||+.|++
T Consensus 212 ~~i~ll~~G~~Ka~av~~~l~g~~~~~~pAs~l~~~h~~~~~~~D~~Aa~~L~~ 265 (266)
T 3eb9_A 212 RNVIVLATGAEKKWVVDGILADTAHKAPVARFLRGCEGNVSFLLDKEIAENLAK 265 (266)
T ss_dssp SEEEEEECCGGGHHHHHHHHCSSCSSCCGGGGGGGCSSEEEEEEEHHHHC----
T ss_pred CeEEEEEeCHHHHHHHHHHHhCCCCccchhHHhcCCCCCEEEEEcHHHhccccc
Confidence 34999999999999999999999888999999999 999999999999998864
No 6
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=99.62 E-value=3.6e-16 Score=104.11 Aligned_cols=51 Identities=22% Similarity=0.162 Sum_probs=48.1
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
++|+|+++|++|+++|+++++|++++++|+|+++.|++++||+|++||+.|
T Consensus 200 r~i~ll~~G~~Ka~av~~~l~g~~~~~~Pas~l~~h~~~~~~~D~~Aa~~L 250 (251)
T 3tx2_A 200 REVWLVVSGEAKADAVAAAVGGADPVDVPAAGAKGIERTVWLLDEAAASQL 250 (251)
T ss_dssp SEEEEEECSGGGHHHHHHHHTTCCTTTSGGGGCCCSSEEEEEEETTTTTTC
T ss_pred CeEEEEEeCHHHHHHHHHHHhCCCCCCCChHHhccCCCEEEEEeHHHHhhc
Confidence 349999999999999999999988889999999999999999999999876
No 7
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=99.61 E-value=4.2e-16 Score=103.67 Aligned_cols=51 Identities=22% Similarity=0.170 Sum_probs=47.9
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
++|+|+++|++|+++|+++++|++++++|+|+++.|++++||+|++||+.|
T Consensus 198 r~i~ll~~G~~Ka~av~~~l~g~~~~~~Pas~l~~h~~~~~~~D~~Aa~~L 248 (248)
T 3oc6_A 198 REVWLVVSGEAKADAVAAAVGGADPVDIPAAGAVGRERTVWLVDEAAAAKL 248 (248)
T ss_dssp EEEEEEECSGGGHHHHHHHHHTCCTTTSGGGGCCCSSEEEEEEETTTTTTC
T ss_pred CeEEEEEeCHHHHHHHHHHHcCCCCCCCChHHhccCCCEEEEEchHHhhCC
Confidence 459999999999999999999988889999999999999999999999865
No 8
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=99.55 E-value=3.5e-15 Score=97.36 Aligned_cols=51 Identities=25% Similarity=0.406 Sum_probs=47.9
Q ss_pred EEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhh
Q psy2121 6 MVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 56 (66)
Q Consensus 6 ~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~ 56 (66)
+++++++|++|+++++++++|++++.+|+|+++.|++++||+|++||+.++
T Consensus 192 ~vi~va~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~~~~D~~Aa~~l~ 242 (242)
T 2bkx_A 192 RILLLISGKSKAEAVRKLLEGNISEDFPASALHLHSDVTVLIDREAASLRP 242 (242)
T ss_dssp CEEEEECSGGGHHHHHHHHHTCCCTTSGGGGGGGCSSEEEEEETTTTTTCC
T ss_pred EEEEEEeChHHHHHHHHHHcCCCCCcccHHHhccCCCEEEEEchHHhccCC
Confidence 499999999999999999999887899999999999999999999998763
No 9
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=99.55 E-value=3.9e-15 Score=99.56 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=48.1
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceee-e-cCcEEEEEeHHHhhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQ-M-HPCTIMICDEDATQELR 56 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~-~-h~~~~~~lD~~Aa~~l~ 56 (66)
++|+|+++|++|+++|+++++|++++.+|+|+++ . |++++||+|++|++.|.
T Consensus 213 ~~v~~la~G~~Ka~av~~~l~g~~~~~~Pas~l~~~~h~~~~~~~D~~Aa~~l~ 266 (267)
T 3css_A 213 KHVVVLAAGKDKNWVVRGVLSESPTDPLPVSRFLRDCRGSVTLLLDPGAGEGVC 266 (267)
T ss_dssp SEEEEEECSGGGHHHHHHHHCSSCCSSCCGGGGGGGCSSEEEEEECTTTTTTTC
T ss_pred CEEEEEEeCHHHHHHHHHHHcCCCCCcCCHHHhccCCCCCEEEEECHHHHhhcc
Confidence 3499999999999999999999887789999999 8 99999999999998763
No 10
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=99.55 E-value=4.8e-15 Score=97.45 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=47.0
Q ss_pred cEEEEEEcChhHHHHHHHHHhcC-Cccccccceeee-cCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEG-VNHMWTVSAFQM-HPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~-~~~~~Pas~l~~-h~~~~~~lD~~Aa~~l 55 (66)
++|+|+++|++|+++|+++++|+ +++.+|+|+++. |++++||+|++||+.|
T Consensus 185 ~~vi~~a~G~~Ka~ai~~~l~~~~~~~~~Pas~l~~~~~~~~~~~D~~Aa~~l 237 (238)
T 1y89_A 185 KRISYLVLGAGKAEIVEQIHTTPAEQLPYPAAKIHSTSGVTEWYLDSDAAAKI 237 (238)
T ss_dssp SEEEEEECSGGGHHHHHHHHHSCGGGCCCHHHHCCCSSSEEEEEEEHHHHTTT
T ss_pred CEEEEEEeCHHHHHHHHHHHhCCCCCccCCHHHHhcCCCCEEEEEChHHHhhc
Confidence 34999999999999999999996 677899999999 8999999999999876
No 11
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=99.53 E-value=7.9e-15 Score=95.39 Aligned_cols=51 Identities=29% Similarity=0.407 Sum_probs=47.5
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
++++++++|++|+++++++++|++++.+|+|+++.|++++||+|++||+.|
T Consensus 184 ~~vi~va~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~~~~D~~Aa~~l 234 (234)
T 2ri0_A 184 KMILLMAFGEEKAEAVAAMVKGPVTEEIPASILQTHPKVILIVDEKAGAGI 234 (234)
T ss_dssp SEEEEEECSGGGHHHHHHHHHSCCCTTSGGGGGGGCSSEEEEEETTTTTTC
T ss_pred CEEEEEEeChHHHHHHHHHHcCCCCCccchHHHhhCCCEEEEEchHHhccC
Confidence 459999999999999999999988889999999999999999999999764
No 12
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=99.21 E-value=5.3e-12 Score=86.85 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=43.8
Q ss_pred cEEEEEEcChhHHHHHHHHHh-cCCcc---ccccceeeecCcEEEEEeHHHh
Q psy2121 5 LMVMILITGSHKAFALYKAIE-EGVNH---MWTVSAFQMHPCTIMICDEDAT 52 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~-~~~~~---~~Pas~l~~h~~~~~~lD~~Aa 52 (66)
++|+|+++|++|+++|+++++ |++++ +||||+||.|+++++++|..+.
T Consensus 245 k~v~~lv~G~~Ka~av~~~l~~g~vt~~~~~~PAS~Lq~Hp~~~vv~~~~~~ 296 (312)
T 3e15_A 245 SSKIFLLNSTDKLDLWKNMLLKSYVDVNYCLYPAVYLIDSMNTTVVTCGYTN 296 (312)
T ss_dssp SEEEEEECSHHHHHHHHHHHHHTTTTCCTTTCHHHHHHHTSCEEEEEESCTT
T ss_pred CeEEEEEcChHHHHHHHHHHHhCCCCCCcCccchHHHhhCCCEEEEEcCCcc
Confidence 349999999999999999999 98877 8999999999999999998753
No 13
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=99.21 E-value=1.2e-11 Score=81.47 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=38.7
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeH
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDE 49 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~ 49 (66)
++|+|+++|++|+++|+++++|+ .+|||+++.|++++||+|+
T Consensus 191 ~~iilla~G~~Ka~av~~~l~g~---~~Pas~l~~h~~~~~~~D~ 232 (232)
T 1vl1_A 191 LYVLFLIRGKEKINRLTEILKDT---PLPAYFVRGKEKTVWFVGK 232 (232)
T ss_dssp SEEEEEEESHHHHHHHHHHHTTC---CCGGGGCCCSSEEEEEEEC
T ss_pred CEEEEEEcCHHHHHHHHHHHhCC---CCChHHhCcCCCEEEEeCC
Confidence 44999999999999999999984 3999999999999999995
No 14
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=98.95 E-value=4.6e-10 Score=73.74 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=37.0
Q ss_pred CcccEEEEEEcChhHHHHHHHHHhcCCccccccceeeecC-cEEE
Q psy2121 2 SRELMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHP-CTIM 45 (66)
Q Consensus 2 ~r~~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~-~~~~ 45 (66)
||+ |+|+++|++|+++|+++++|++++++|+|+++.|+ ++.|
T Consensus 182 A~~--i~ll~~G~~Ka~av~~~l~g~~~~~~Pas~l~~h~~~v~w 224 (226)
T 3lwd_A 182 AGL--HVLHITGNDKRRVLAEALAGDDVRQLPIRAFLSQPIATYW 224 (226)
T ss_dssp BSC--EEEEEESHHHHHHHHHHHHCCCTTTSTTHHHHTSCCEEEE
T ss_pred hCe--EEEEEECHHHHHHHHHHHcCCCCCcCChHHHhcCCCeEEe
Confidence 455 99999999999999999999888899999999984 4555
No 15
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=98.91 E-value=7.9e-10 Score=72.83 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=35.5
Q ss_pred CcccEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCc
Q psy2121 2 SRELMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPC 42 (66)
Q Consensus 2 ~r~~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~ 42 (66)
||+ |+|+++|++|+++|+++++|++++++|+|+++.|++
T Consensus 186 A~~--i~ll~~G~~Ka~av~~~l~g~~~~~~Pas~l~~h~~ 224 (233)
T 3nwp_A 186 SRQ--IYLHLVGEQKLSVYRQALESDDVHAMPIRAVLAQRK 224 (233)
T ss_dssp BSC--EEEEEESHHHHHHHHHHHTCCCTTTCTTHHHHSCSS
T ss_pred hCe--EEEEEECHHHHHHHHHHHhCCCCCCccHHHHHhCCC
Confidence 455 999999999999999999998888999999999864
No 16
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=98.88 E-value=9.1e-10 Score=72.35 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=33.6
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCc
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPC 42 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~ 42 (66)
++|+|+++|++|+++|+++++| +++++|+|+++.|++
T Consensus 187 ~~i~ll~~G~~Ka~av~~~l~g-~~~~~Pas~l~~h~~ 223 (232)
T 3lhi_A 187 GHVFLAIQGEEKKAVFDQAAQG-ENREYPISLVLNHQG 223 (232)
T ss_dssp SEEEEEEESHHHHHHHHHHHTS-CCTTSTHHHHHTSTT
T ss_pred CeEEEEEECHHHHHHHHHHHhC-CCccCcHHHHHhCCC
Confidence 3499999999999999999998 667899999999984
No 17
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=97.68 E-value=7e-05 Score=49.59 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=32.9
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
+++++++.|++|+++++.+++|+.. .++++|+++|..|
T Consensus 225 ~~vI~vA~G~~Ka~AI~aal~g~~~-------------~~LItDe~aA~~L 262 (264)
T 2r5f_A 225 NRVLGLAGGVRKVQAIKGALLGGYL-------------DVLITDVGTARGL 262 (264)
T ss_dssp SEEEEECCCGGGHHHHHHHHHTTCC-------------SEEEEEHHHHHHH
T ss_pred CCEEEEEcCHHHHHHHHHHHhcCCC-------------CEEEECHHHHHHH
Confidence 4599999999999999999999742 2789999999876
No 18
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=97.67 E-value=6.1e-05 Score=49.66 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=33.6
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 56 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~ 56 (66)
++++++++|++|+++++.+++|+.. .++++|+++|..|.
T Consensus 214 ~~vI~vA~G~~Ka~AI~aal~g~~~-------------~~LItDe~aA~~LL 252 (255)
T 2okg_A 214 PDIIAVAGGSSKAEAIEAYFKKPRN-------------TVLVTDEGAAKKLL 252 (255)
T ss_dssp SEEEEECCSGGGHHHHHHHTTSCCC-------------EEEEEEHHHHHHHH
T ss_pred CCEEEEEcCHHHHHHHHHHHhCCCC-------------CEEEECHHHHHHHH
Confidence 4599999999999999999998742 38999999998763
No 19
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=97.65 E-value=7.8e-05 Score=49.40 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=34.1
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhH
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRV 57 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~ 57 (66)
+++++++.|++|+++++.+++|+.. .++++|+++|..|..
T Consensus 222 ~~vI~vA~G~~Ka~AI~aal~g~~~-------------~~LItDe~aA~~Ll~ 261 (266)
T 2gnp_A 222 PQSLAVAYGDTKVSSILSVLRANLV-------------NHLITDKNTILKVLE 261 (266)
T ss_dssp SEEEEECCSGGGHHHHHHHHHTTCC-------------SEEEEEHHHHHHHHH
T ss_pred CCEEEEecChhhHHHHHHHHhcCCC-------------CEEEECHHHHHHHHh
Confidence 4599999999999999999999742 278999999988643
No 20
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=97.65 E-value=8e-05 Score=50.00 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=33.0
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
++++++++|++|+++++.+++|+.. .++++|+++|..|
T Consensus 276 ~~ii~vA~G~~Ka~Ai~~al~g~~~-------------~~LitDe~aA~~l 313 (315)
T 2w48_A 276 RYSIGIAMGEEKYSGILGALHGRYI-------------NCLVTNRETAELL 313 (315)
T ss_dssp SEEEEECCCGGGHHHHHHHHHTTSC-------------SEEEEEHHHHHHH
T ss_pred CCEEEEecChHhHHHHHHHHhCCCC-------------CEEEECHHHHHHH
Confidence 4599999999999999999999742 2789999999876
No 21
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=97.61 E-value=7.9e-05 Score=50.74 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=33.9
Q ss_pred cEEEEEEcChhHHHHHHHHHhc-CCccccccceeeecCcEEEEEeHHHhhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEE-GVNHMWTVSAFQMHPCTIMICDEDATQELR 56 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~-~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~ 56 (66)
+++++++.|++|+++++.+++| +.. +++++|+++|..|.
T Consensus 301 ~~vi~vA~G~~Ka~Ai~~al~g~~~~-------------~~LitDe~aA~~ll 340 (345)
T 2o0m_A 301 PYVVAIAGGKTKAKAIRAYMKNAPKQ-------------TWLITDEAAANEIL 340 (345)
T ss_dssp SEEEEECCSGGGHHHHHHHHTTSCTT-------------CEEEEEHHHHHHHT
T ss_pred CCEEEEEcChHHHHHHHHHHhCCCCC-------------eEEEECHHHHHHHH
Confidence 4599999999999999999998 743 77899999998764
No 22
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=95.75 E-value=0.02 Score=37.85 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=31.6
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 56 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~ 56 (66)
++++.++.|..|+++++.+++|+.- ..+++|+.+|..|.
T Consensus 224 ~~vi~vA~G~~Ka~Ai~aal~g~~~-------------~~LITDe~tA~~lL 262 (267)
T 3nze_A 224 RRRICVVSGASKINGLQGALAAGLA-------------TDLILDEASARRLV 262 (267)
T ss_dssp SEEEEEECCGGGHHHHHHHHHTTCC-------------SEEEEEHHHHHHHT
T ss_pred CeEEEEeCChHHHHHHHHHHhcCCC-------------CEEEeCHHHHHHHH
Confidence 4599999999999999999988531 34778998887764
No 23
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=95.32 E-value=0.029 Score=37.06 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=32.3
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhH
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRV 57 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~ 57 (66)
++++.++.|..|+++++.+++|..- ..+++|+.+|..|..
T Consensus 222 ~~~i~va~G~~K~~ai~~al~~~~~-------------~~LITDe~tA~~lL~ 261 (267)
T 3kv1_A 222 PNVVAMASESRKALSIMGALRTGVI-------------DVLATSVSCAMALLN 261 (267)
T ss_dssp SEEEEECCCGGGHHHHHHHHHTSCC-------------SEEEEEHHHHHHHHH
T ss_pred CcEEEEecChHHHHHHHHHHhcCCC-------------CEEEeCHHHHHHHHh
Confidence 4599999999999999999987531 347789999887743
No 24
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=94.61 E-value=0.021 Score=37.60 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=30.6
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
++++.++.|+.|+++++.+++|+.- ..+++|+.+|..|
T Consensus 227 ~~~i~va~G~~Ka~Ai~aal~g~~~-------------~~LITDe~tA~~l 264 (266)
T 3efb_A 227 RYSIGIAMSEEKYSGIIGALRGKYI-------------NCLVTNSSTAELL 264 (266)
T ss_dssp SEEEEECCCSCSSCHHHHHHHTTSC-------------SEEEEEHHHHHHH
T ss_pred CCEEEEecChHHHHHHHHHHhcCCC-------------CEEEeCHHHHHHH
Confidence 4599999999999999999988531 2367899888765
No 25
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=50.30 E-value=20 Score=22.96 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhh
Q psy2121 13 GSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 56 (66)
Q Consensus 13 G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~ 56 (66)
|..=++++.++|.|+...++|... ..+..+++|...+..|.
T Consensus 247 G~~aa~~a~~IL~G~~p~~ipv~~---~~~~~~~iN~~~a~~lG 287 (302)
T 3lkv_A 247 GVQTADYVAAILEGKEPGSLDVQV---AKGSDLVINKTAAEQLG 287 (302)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCEE---CCCCEEEECHHHHHHTT
T ss_pred HHHHHHHHHHHHCcCCcccCCccc---cCCcEEEEcHHHHHHcC
Confidence 444567889999998766788643 33466888999988774
No 26
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=36.11 E-value=18 Score=21.69 Aligned_cols=18 Identities=33% Similarity=0.270 Sum_probs=11.0
Q ss_pred CCcccEEEEEEcChhHHH
Q psy2121 1 MSRELMVMILITGSHKAF 18 (66)
Q Consensus 1 ~~r~~~v~~lv~G~~Ka~ 18 (66)
|+...+|+|+++|--=+.
T Consensus 1 m~~~~~VLFVC~gN~cRS 18 (163)
T 1u2p_A 1 MSDPLHVTFVCTGNICRS 18 (163)
T ss_dssp ---CEEEEEEESSSSSHH
T ss_pred CCCCCEEEEEcCCcHhHH
Confidence 556567999999965443
No 27
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A
Probab=32.15 E-value=58 Score=20.14 Aligned_cols=48 Identities=19% Similarity=0.077 Sum_probs=27.6
Q ss_pred CCcccEEEEEEcChhH--------HHHHHHHHhcCCccccccceeeecCcEEEEEeHH
Q psy2121 1 MSRELMVMILITGSHK--------AFALYKAIEEGVNHMWTVSAFQMHPCTIMICDED 50 (66)
Q Consensus 1 ~~r~~~v~~lv~G~~K--------a~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~ 50 (66)
|+=+ +.||-||..- ..+-+...+++......++++-..++..+++|-.
T Consensus 1 m~~~--~~~LGtg~~~g~P~~~c~C~~C~~ar~~~~~~r~~s~~li~~~~~~iLiD~G 56 (258)
T 3g1p_A 1 MSLT--LTLTGTGGAQGVPAWGCECAACARARRSPQYRRQPCSGVVKFNDAITLIDAG 56 (258)
T ss_dssp -CEE--EEEEECBCSSCBSCTTCCSHHHHHHHHCGGGCBCBSEEEEEETTEEEEECCC
T ss_pred CceE--EEEEEeCCCCCCccCCcCChhhhhhhhCccccccCceEEEEECCcEEEEECC
Confidence 4434 8899999644 2333333333333445666655556677888965
No 28
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=31.32 E-value=70 Score=17.71 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=18.0
Q ss_pred EEEEEE-cChhHHHHHHHHHhcCCc
Q psy2121 6 MVMILI-TGSHKAFALYKAIEEGVN 29 (66)
Q Consensus 6 ~v~~lv-~G~~Ka~al~~~l~~~~~ 29 (66)
+|+++. +|.||...+.+++.+...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~~~ 35 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSYFV 35 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCc
Confidence 455555 588999999999877543
No 29
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=29.50 E-value=67 Score=17.55 Aligned_cols=24 Identities=4% Similarity=-0.039 Sum_probs=17.4
Q ss_pred EEEEEE-cChhHHHHHHHHHhcCCc
Q psy2121 6 MVMILI-TGSHKAFALYKAIEEGVN 29 (66)
Q Consensus 6 ~v~~lv-~G~~Ka~al~~~l~~~~~ 29 (66)
+|+++. +|.+|...+.+++.+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~~ 31 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIFT 31 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC
Confidence 355554 468999999999876543
No 30
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=28.65 E-value=78 Score=17.38 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=18.7
Q ss_pred cccEEEEEE-cChhHHHHHHHHHhcCCc
Q psy2121 3 RELMVMILI-TGSHKAFALYKAIEEGVN 29 (66)
Q Consensus 3 r~~~v~~lv-~G~~Ka~al~~~l~~~~~ 29 (66)
+..+|+++. +|.+|...+.+++.+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~ 33 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV 33 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 343455554 468999999999877653
No 31
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=26.08 E-value=79 Score=18.08 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=17.0
Q ss_pred EEEEE-cChhHHHHHHHHHhcCCc
Q psy2121 7 VMILI-TGSHKAFALYKAIEEGVN 29 (66)
Q Consensus 7 v~~lv-~G~~Ka~al~~~l~~~~~ 29 (66)
|+++. +|.||...+.+++.+...
T Consensus 17 i~v~G~~~~GKSsli~~l~~~~~~ 40 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYDEFV 40 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCC
T ss_pred EEEECCCCCCHHHHHHHHHhCCCC
Confidence 44444 578999999999876643
No 32
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=25.81 E-value=49 Score=22.20 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=16.5
Q ss_pred cccEEEEEEcC-hhHHHHHHHH
Q psy2121 3 RELMVMILITG-SHKAFALYKA 23 (66)
Q Consensus 3 r~~~v~~lv~G-~~Ka~al~~~ 23 (66)
|+-++++|.+| .||.-+++++
T Consensus 6 ~~~klLlLG~geSGKSTi~KQm 27 (327)
T 3ohm_A 6 RELKLLLLGTGESGKSTFIKQM 27 (327)
T ss_dssp CEEEEEEECSTTSSHHHHHHHH
T ss_pred ccceEEEEcCCCccHHHHHHHH
Confidence 45577888888 6999999865
No 33
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=25.44 E-value=89 Score=17.00 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=17.9
Q ss_pred EEEEEE-cChhHHHHHHHHHhcCCcc
Q psy2121 6 MVMILI-TGSHKAFALYKAIEEGVNH 30 (66)
Q Consensus 6 ~v~~lv-~G~~Ka~al~~~l~~~~~~ 30 (66)
+|+++. +|.+|...+.+.+.+....
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~~~ 30 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIFVE 30 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 355554 5789999999999775433
No 34
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=25.19 E-value=55 Score=19.41 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=17.2
Q ss_pred CCcccEEEEE-EcChhHHHHHHHHHh
Q psy2121 1 MSRELMVMIL-ITGSHKAFALYKAIE 25 (66)
Q Consensus 1 ~~r~~~v~~l-v~G~~Ka~al~~~l~ 25 (66)
|++.+-++++ .+|.+|..+.+.+.+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHH
Confidence 5666444444 369999998888765
No 35
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=24.98 E-value=90 Score=16.88 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=17.5
Q ss_pred EEEEEE-cChhHHHHHHHHHhcCCc
Q psy2121 6 MVMILI-TGSHKAFALYKAIEEGVN 29 (66)
Q Consensus 6 ~v~~lv-~G~~Ka~al~~~l~~~~~ 29 (66)
+|+++. +|.+|...+.+.+.+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~~~ 30 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDEFV 30 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCccC
Confidence 345554 578999999999876643
No 36
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=24.81 E-value=72 Score=21.55 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=18.1
Q ss_pred ccEEEEEEcChhH-HHHHHHHHhcCCccccc
Q psy2121 4 ELMVMILITGSHK-AFALYKAIEEGVNHMWT 33 (66)
Q Consensus 4 ~~~v~~lv~G~~K-a~al~~~l~~~~~~~~P 33 (66)
.++|+++.||-.+ .+.+.++++....+.+|
T Consensus 368 ~~~Vv~i~tGG~~d~~~~~~~~~~g~~~~~~ 398 (398)
T 4d9i_A 368 DAVVLVISTEGDTDVKHYREVVWEGKHAVAP 398 (398)
T ss_dssp TCEEEEEECBCCSSHHHHHHHHTTCTTCCC-
T ss_pred CCEEEEEeCCCCCCHHHHHHHHhcccCCCCC
Confidence 3568888888766 45667777654333343
No 37
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=24.15 E-value=96 Score=17.35 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=16.7
Q ss_pred EEEEE-cChhHHHHHHHHHhcCCc
Q psy2121 7 VMILI-TGSHKAFALYKAIEEGVN 29 (66)
Q Consensus 7 v~~lv-~G~~Ka~al~~~l~~~~~ 29 (66)
|+++. +|.+|...+.+++.+...
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~~~ 33 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKDTFH 33 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCC
T ss_pred EEEECCCCCCHHHHHHHHHhCcCC
Confidence 44444 467999999999987543
No 38
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=23.64 E-value=51 Score=19.71 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=15.1
Q ss_pred CCcccEEEEEE-cChhHHHHHHHHHh
Q psy2121 1 MSRELMVMILI-TGSHKAFALYKAIE 25 (66)
Q Consensus 1 ~~r~~~v~~lv-~G~~Ka~al~~~l~ 25 (66)
|.+.+.++++. +|++|...++.+..
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33333345554 79999999888764
No 39
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=23.24 E-value=95 Score=19.59 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=26.6
Q ss_pred CCcccEEEEEEcChhHHHHHHHHHhcCCccccccceeee-cCcEEEEEeHHHhhhh
Q psy2121 1 MSRELMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQM-HPCTIMICDEDATQEL 55 (66)
Q Consensus 1 ~~r~~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~-h~~~~~~lD~~Aa~~l 55 (66)
|++.++|++-+||+-=+--.-++++. ++. .-++.+++.++|..-+
T Consensus 1 m~~~k~IllgvTGaiaa~k~~~ll~~----------L~~~g~eV~vv~T~~A~~fi 46 (209)
T 3zqu_A 1 MSGPERITLAMTGASGAQYGLRLLDC----------LVQEEREVHFLISKAAQLVM 46 (209)
T ss_dssp CCSCSEEEEEECSSSCHHHHHHHHHH----------HHHTTCEEEEEECHHHHHHH
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHH----------HHHCCCEEEEEECccHHHHH
Confidence 78888999999998543332233321 111 2356777777765544
No 40
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=23.05 E-value=81 Score=21.09 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=15.4
Q ss_pred EEEEEE-cChhHHHHHHHHHh
Q psy2121 6 MVMILI-TGSHKAFALYKAIE 25 (66)
Q Consensus 6 ~v~~lv-~G~~Ka~al~~~l~ 25 (66)
+++++. ||.+|...+..++.
T Consensus 55 h~~i~G~tGsGKs~~~~~li~ 75 (437)
T 1e9r_A 55 HLLVNGATGTGKSVLLRELAY 75 (437)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 366666 89999998877664
No 41
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=22.19 E-value=99 Score=18.81 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=30.0
Q ss_pred EEEEE-cChhHHHHHHHHHhcCCc-cccccceee-------ecCcEEEEEeHHHhhhh
Q psy2121 7 VMILI-TGSHKAFALYKAIEEGVN-HMWTVSAFQ-------MHPCTIMICDEDATQEL 55 (66)
Q Consensus 7 v~~lv-~G~~Ka~al~~~l~~~~~-~~~Pas~l~-------~h~~~~~~lD~~Aa~~l 55 (66)
|++.. +|.+|-.+++++++..+. -.++.|.-. .+|.=+.|++++.-..+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHH
Confidence 44443 699999999999875322 224444422 12445788888776544
No 42
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=22.04 E-value=1.1e+02 Score=17.81 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=20.0
Q ss_pred EEEEEE-cChhHHHHHHHHHhcCCcccccc
Q psy2121 6 MVMILI-TGSHKAFALYKAIEEGVNHMWTV 34 (66)
Q Consensus 6 ~v~~lv-~G~~Ka~al~~~l~~~~~~~~Pa 34 (66)
+|+++. +|.+|...+.+.+.+.....+|.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~~~~~~~~ 38 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTS 38 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccccCC
Confidence 355554 57899999999998765444443
Done!