Query psy2121
Match_columns 66
No_of_seqs 132 out of 1005
Neff 6.6
Searched_HMMs 13730
Date Fri Aug 16 16:37:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2121.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2121hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ne7a_ c.124.1.1 (A:) Glucosa 99.8 4.9E-20 3.6E-24 122.8 6.7 63 2-66 196-258 (281)
2 d1fsfa_ c.124.1.1 (A:) Glucosa 99.8 1.6E-19 1.1E-23 118.7 5.5 60 6-65 198-257 (266)
3 d1vl1a_ c.124.1.1 (A:) 6-phosp 99.1 4.5E-11 3.3E-15 76.1 4.8 43 4-49 176-218 (218)
4 d2o0ma1 c.124.1.8 (A:95-341) T 97.7 2.3E-05 1.6E-09 49.4 4.8 39 5-55 207-245 (247)
5 d2okga1 c.124.1.8 (A:89-338) C 96.7 0.0014 1E-07 41.3 5.1 38 5-55 211-248 (250)
6 d3efba1 c.124.1.8 (A:11-265) S 96.0 0.0017 1.3E-07 40.7 2.5 37 6-55 217-253 (255)
7 d2gnpa1 c.124.1.8 (A:56-317) T 95.9 0.0087 6.3E-07 37.8 5.5 40 5-57 219-258 (262)
8 d2r5fa1 c.124.1.8 (A:59-316) T 93.8 0.049 3.5E-06 34.2 4.7 38 5-55 220-257 (258)
9 d1upta_ c.37.1.8 (A:) ADP-ribo 69.2 3.3 0.00024 21.9 3.8 33 1-33 2-35 (169)
10 d1f6ba_ c.37.1.8 (A:) SAR1 {Ch 47.0 7.9 0.00057 20.6 2.8 29 5-33 14-43 (186)
11 d1sfea2 c.55.7.1 (A:12-92) Ada 44.7 15 0.0011 18.0 3.5 46 7-65 24-69 (81)
12 d2cnda2 c.25.1.1 (A:125-270) N 35.6 27 0.002 18.0 4.4 22 5-26 13-37 (146)
13 d2bmea1 c.37.1.8 (A:6-179) Rab 32.8 34 0.0024 18.2 4.9 23 7-29 8-31 (174)
14 d1xtqa1 c.37.1.8 (A:3-169) GTP 32.3 33 0.0024 18.1 3.9 27 3-29 3-30 (167)
15 d1z0ja1 c.37.1.8 (A:2-168) Rab 31.1 26 0.0019 18.6 3.3 28 6-33 6-34 (167)
16 d1qhxa_ c.37.1.3 (A:) Chloramp 31.0 21 0.0015 18.6 2.8 23 1-25 1-25 (178)
17 d1z0fa1 c.37.1.8 (A:8-173) Rab 31.0 23 0.0017 18.9 3.0 19 12-30 13-31 (166)
18 d1znwa1 c.37.1.1 (A:20-201) Gu 30.4 24 0.0017 19.3 3.1 49 7-55 5-61 (182)
19 d1x38a2 c.23.11.1 (A:389-602) 29.4 20 0.0015 20.5 2.7 25 13-38 159-185 (214)
20 d1z06a1 c.37.1.8 (A:32-196) Ra 29.1 19 0.0014 19.0 2.5 25 7-31 5-30 (165)
21 d2eyqa2 c.37.1.19 (A:349-465) 28.9 18 0.0013 19.1 2.3 21 6-26 36-56 (117)
22 d1jl3a_ c.44.1.1 (A:) Arsenate 25.4 26 0.0019 18.4 2.6 20 5-24 2-21 (137)
23 d1yzqa1 c.37.1.8 (A:14-177) Ra 24.8 36 0.0026 17.9 3.1 20 11-30 8-27 (164)
24 d1wmsa_ c.37.1.8 (A:) Rab9a {H 24.4 35 0.0026 18.2 3.1 22 11-32 14-35 (174)
25 d1r2qa_ c.37.1.8 (A:) Rab5a {H 24.1 40 0.0029 17.9 3.3 21 11-31 14-34 (170)
26 d2bgca1 a.4.5.4 (A:138-237) Li 23.7 33 0.0024 17.8 2.7 29 36-64 61-89 (100)
27 d2f7sa1 c.37.1.8 (A:5-190) Rab 23.6 49 0.0036 17.7 3.6 20 12-31 14-33 (186)
28 d1kgda_ c.37.1.1 (A:) Guanylat 23.5 39 0.0029 18.7 3.2 44 12-55 12-63 (178)
29 d1tdha3 g.39.1.8 (A:247-290) E 23.5 19 0.0014 16.6 1.4 33 14-47 4-36 (44)
30 d1z1ba1 d.10.1.4 (A:11-59) lam 22.4 24 0.0017 16.6 1.7 17 9-25 24-40 (49)
31 d1dg9a_ c.44.1.1 (A:) Tyrosine 22.4 32 0.0023 18.4 2.6 19 5-23 6-24 (157)
32 d1c1ya_ c.37.1.8 (A:) Rap1A {H 22.3 54 0.0039 17.2 3.6 27 6-32 5-32 (167)
33 d1p8aa_ c.44.1.1 (A:) Tyrosine 22.1 12 0.00089 20.1 0.6 11 5-15 5-15 (146)
34 d1ly1a_ c.37.1.1 (A:) Polynucl 21.9 45 0.0033 17.0 3.1 15 12-26 11-25 (152)
35 d1z08a1 c.37.1.8 (A:17-183) Ra 21.3 38 0.0028 17.9 2.8 20 12-31 12-31 (167)
36 d1jeqa1 a.140.2.1 (A:559-609) 20.7 23 0.0017 16.6 1.5 13 12-25 35-47 (51)
37 d2oa4a1 a.4.12.3 (A:1-93) Unch 20.3 30 0.0022 18.3 2.0 16 14-29 37-52 (93)
38 d1svsa1 c.37.1.8 (A:32-60,A:18 20.2 52 0.0038 17.3 3.2 44 6-49 4-49 (195)
No 1
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79 E-value=4.9e-20 Score=122.85 Aligned_cols=63 Identities=84% Similarity=1.283 Sum_probs=59.2
Q ss_pred CcccEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhHhhHHhhhhC
Q psy2121 2 SRELMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFKRL 66 (66)
Q Consensus 2 ~r~~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~~~~~y~~~~ 66 (66)
||. |+|+++|++|+++|+++++|++++.+|||+++.|++++||+|++||+.|+.+|.+||+.+
T Consensus 196 Ak~--iill~~G~~Ka~~v~~~l~~~~~~~~PAS~l~~h~~~~~~~D~~AAs~L~~~~~~~~~~~ 258 (281)
T d1ne7a_ 196 ARE--VMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGL 258 (281)
T ss_dssp SSC--EEEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEEGGGGTTSBHHHHHHHHHT
T ss_pred cce--EEEEEeCccHHHHHHHHHcCCCCCccChHHHccCCCEEEEEeHHHHcCCchhHHHHHHHH
Confidence 455 999999999999999999998888999999999999999999999999999999999863
No 2
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Escherichia coli [TaxId: 562]}
Probab=99.77 E-value=1.6e-19 Score=118.69 Aligned_cols=60 Identities=58% Similarity=0.975 Sum_probs=57.6
Q ss_pred EEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhHhhHHhhhh
Q psy2121 6 MVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFKR 65 (66)
Q Consensus 6 ~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~~~~~y~~~ 65 (66)
+|+|+++|++|+++|+++++|++++.||||+++.|++++||+|++||+.|+.++++||+.
T Consensus 198 ~i~ll~~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~AAs~L~~~~~~~~~~ 257 (266)
T d1fsfa_ 198 EVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYFNE 257 (266)
T ss_dssp CEEEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGSSSEEEEECSGGGTTSCHHHHHHHHH
T ss_pred eEEEEEcCHHHHHHHHHHHcCCCCCcCchHHhccCCCEEEEEeHHHhcccchhhHHHHHH
Confidence 499999999999999999999988899999999999999999999999999999999975
No 3
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga maritima [TaxId: 2336]}
Probab=99.09 E-value=4.5e-11 Score=76.10 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=39.1
Q ss_pred ccEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeH
Q psy2121 4 ELMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDE 49 (66)
Q Consensus 4 ~~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~ 49 (66)
.++|+|+++|++|+++|+++++|+ .+|+++++.|.+++||+|+
T Consensus 176 ak~i~ll~~G~~K~~~l~~~~~~~---~~Pa~~l~~~~~~~~~~Dk 218 (218)
T d1vl1a_ 176 SLYVLFLIRGKEKINRLTEILKDT---PLPAYFVRGKEKTVWFVGK 218 (218)
T ss_dssp CSEEEEEEESHHHHHHHHHHHTTC---CCGGGGCCCSSEEEEEEEC
T ss_pred cCEEEEEEcCHHHHHHHHHHhcCC---CCChHHhcCCCCEEEEEcC
Confidence 356999999999999999999874 5999999999999999995
No 4
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]}
Probab=97.71 E-value=2.3e-05 Score=49.39 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=33.0
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
++++++++|++|+++++.++.|. +.|+.+++|+++|..|
T Consensus 207 ~~vi~va~G~~Ka~ai~aAL~gg------------~~~~~LitDe~tA~~l 245 (247)
T d2o0ma1 207 PYVVAIAGGKTKAKAIRAYMKNA------------PKQTWLITDEAAANEI 245 (247)
T ss_dssp SEEEEECCSGGGHHHHHHHHTTS------------CTTCEEEEEHHHHHHH
T ss_pred CeEEEEecChhHHHHHHHHHhcC------------CCCeEEEeCHHHHHHH
Confidence 35999999999999999988873 4466789999999876
No 5
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]}
Probab=96.70 E-value=0.0014 Score=41.30 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=31.2
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
+++++++.|++|+++++.++.|. -...+++|+++|..|
T Consensus 211 ~~~i~vA~G~~K~~Ai~aAL~gg-------------~i~~LItDe~tA~~L 248 (250)
T d2okga1 211 PDIIAVAGGSSKAEAIEAYFKKP-------------RNTVLVTDEGAAKKL 248 (250)
T ss_dssp SEEEEECCSGGGHHHHHHHTTSC-------------CCEEEEEEHHHHHHH
T ss_pred CcEEEEECCcHhHHHHHHHHhcC-------------CCCEEEECHHHHHHH
Confidence 35999999999999999988873 234568999999876
No 6
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]}
Probab=96.00 E-value=0.0017 Score=40.73 Aligned_cols=37 Identities=8% Similarity=0.089 Sum_probs=30.6
Q ss_pred EEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 6 MVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 6 ~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
++++++.|..|+++++.++.|. +- ..+++|+++|..|
T Consensus 217 ~~I~vA~G~~Ka~aI~aaL~gg------------~~-~~LItDe~tA~~L 253 (255)
T d3efba1 217 YSIGIAMSEEKYSGIIGALRGK------------YI-NCLVTNSSTAELL 253 (255)
T ss_dssp EEEEECCCSCSSCHHHHHHHTT------------SC-SEEEEEHHHHHHH
T ss_pred cEEEEecCchhHHHHHHHHhcC------------CC-CEEEeCHHHHHHH
Confidence 4999999999999999999874 22 2378999998876
No 7
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=95.89 E-value=0.0087 Score=37.80 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=32.6
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhH
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRV 57 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~ 57 (66)
.+++.++.|++|+++++.++.|..- + .+++|++.|..|..
T Consensus 219 ~~~I~vA~G~~K~~aI~aAL~gg~i------------~-~LItDe~tA~~lL~ 258 (262)
T d2gnpa1 219 PQSLAVAYGDTKVSSILSVLRANLV------------N-HLITDKNTILKVLE 258 (262)
T ss_dssp SEEEEECCSGGGHHHHHHHHHTTCC------------S-EEEEEHHHHHHHHH
T ss_pred CCEEEEecCchhHHHHHHHHhcCCC------------C-EEEeCHHHHHHHHh
Confidence 3599999999999999999998631 1 46789999987754
No 8
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]}
Probab=93.77 E-value=0.049 Score=34.19 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=30.4
Q ss_pred cEEEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhh
Q psy2121 5 LMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l 55 (66)
++++.++.|.+|+++++.++.|.. -..+++|++.|..|
T Consensus 220 ~~~I~vA~G~~K~~aI~aAl~gg~-------------i~~LITDe~tA~~L 257 (258)
T d2r5fa1 220 NRVLGLAGGVRKVQAIKGALLGGY-------------LDVLITDVGTARGL 257 (258)
T ss_dssp SEEEEECCCGGGHHHHHHHHHTTC-------------CSEEEEEHHHHHHH
T ss_pred CcEEEEecCchhHHHHHHHHhcCC-------------CCEEEECHHHHHhh
Confidence 458999999999999999998753 12367899988765
No 9
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}
Probab=69.24 E-value=3.3 Score=21.94 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=24.6
Q ss_pred CCcccEEEEEE-cChhHHHHHHHHHhcCCccccc
Q psy2121 1 MSRELMVMILI-TGSHKAFALYKAIEEGVNHMWT 33 (66)
Q Consensus 1 ~~r~~~v~~lv-~G~~Ka~al~~~l~~~~~~~~P 33 (66)
|+++-+|+++. +|.||...+.++..+......|
T Consensus 2 m~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~ 35 (169)
T d1upta_ 2 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIP 35 (169)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHhCCCCcceec
Confidence 77886666664 6789999999999877644344
No 10
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=46.99 E-value=7.9 Score=20.64 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=18.5
Q ss_pred cEEEEEE-cChhHHHHHHHHHhcCCccccc
Q psy2121 5 LMVMILI-TGSHKAFALYKAIEEGVNHMWT 33 (66)
Q Consensus 5 ~~v~~lv-~G~~Ka~al~~~l~~~~~~~~P 33 (66)
-+|+++. +|.||...+.++..+......|
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~ 43 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVP 43 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC------C
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcceec
Confidence 3566666 8999999999988766433333
No 11
>d1sfea2 c.55.7.1 (A:12-92) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=44.66 E-value=15 Score=17.99 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=26.7
Q ss_pred EEEEEcChhHHHHHHHHHhcCCccccccceeeecCcEEEEEeHHHhhhhhHhhHHhhhh
Q psy2121 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFKR 65 (66)
Q Consensus 7 v~~lv~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~lD~~Aa~~l~~~~~~y~~~ 65 (66)
|+.+.++.+....+..... .+|.+.+.. |.+..........+||.+
T Consensus 24 lc~i~F~d~~~~~~~~l~~-----~~p~a~l~~--------~~~~l~~~~~ql~~yf~g 69 (81)
T d1sfea2 24 ICAILLGDDDATLISELQQ-----MFPAADNAP--------ADLMFQQHVREVIASLNQ 69 (81)
T ss_dssp EEEEEEESCHHHHHHHHHH-----HSTTCEECT--------TCHHHHHHHHHHHHHHHS
T ss_pred EEEEEEecChHHHHHHHHH-----hhccceeec--------ccchhHHHHHHHHHHHhC
Confidence 7888888777665554432 366665544 223334444556778764
No 12
>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}
Probab=35.57 E-value=27 Score=17.97 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=16.4
Q ss_pred cEEEEEEcChhHHHH---HHHHHhc
Q psy2121 5 LMVMILITGSHKAFA---LYKAIEE 26 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~a---l~~~l~~ 26 (66)
++++|++.|.+=+.. ++.++..
T Consensus 13 k~lv~IAgGtGIaP~~s~l~~~~~~ 37 (146)
T d2cnda2 13 RRLAMICGGSGITPMYQIIQAVLRD 37 (146)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHT
T ss_pred CEEEEEeceEEHhHHHHHHHHHHHh
Confidence 459999999999985 4444543
No 13
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.79 E-value=34 Score=18.23 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=17.1
Q ss_pred EEEE-EcChhHHHHHHHHHhcCCc
Q psy2121 7 VMIL-ITGSHKAFALYKAIEEGVN 29 (66)
Q Consensus 7 v~~l-v~G~~Ka~al~~~l~~~~~ 29 (66)
|+++ ..|.||...+.+...+...
T Consensus 8 I~lvG~~~vGKTsll~~~~~~~~~ 31 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEKKFK 31 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSCC
T ss_pred EEEECCCCcCHHHHHHHHHhCCCC
Confidence 4444 3688999999999877643
No 14
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.34 E-value=33 Score=18.12 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=19.4
Q ss_pred cccEEEEEE-cChhHHHHHHHHHhcCCc
Q psy2121 3 RELMVMILI-TGSHKAFALYKAIEEGVN 29 (66)
Q Consensus 3 r~~~v~~lv-~G~~Ka~al~~~l~~~~~ 29 (66)
+..+|+++. .|-||...+.+.+.+...
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~ 30 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFV 30 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCC
Confidence 344566664 577999999998877643
No 15
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.12 E-value=26 Score=18.64 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=18.9
Q ss_pred EEEEEE-cChhHHHHHHHHHhcCCccccc
Q psy2121 6 MVMILI-TGSHKAFALYKAIEEGVNHMWT 33 (66)
Q Consensus 6 ~v~~lv-~G~~Ka~al~~~l~~~~~~~~P 33 (66)
+|+++. .|.||...+.+.+.+...+.++
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~~f~~~~~ 34 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVEDSFDPNIN 34 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTTCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccc
Confidence 344442 5679999999999877544433
No 16
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}
Probab=31.02 E-value=21 Score=18.61 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=16.5
Q ss_pred CCcccEEEEE--EcChhHHHHHHHHHh
Q psy2121 1 MSRELMVMIL--ITGSHKAFALYKAIE 25 (66)
Q Consensus 1 ~~r~~~v~~l--v~G~~Ka~al~~~l~ 25 (66)
|+.. |++| .+|.||..+.+.+.+
T Consensus 1 M~~k--iI~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 1 MTTR--MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCCC--EEEEECCTTSSHHHHHHHHHH
T ss_pred CCCe--EEEEECCCCCCHHHHHHHHHH
Confidence 6666 7777 489999987665544
No 17
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.96 E-value=23 Score=18.87 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=15.0
Q ss_pred cChhHHHHHHHHHhcCCcc
Q psy2121 12 TGSHKAFALYKAIEEGVNH 30 (66)
Q Consensus 12 ~G~~Ka~al~~~l~~~~~~ 30 (66)
+|.||...+.+.+.+....
T Consensus 13 ~~vGKTsli~~~~~~~~~~ 31 (166)
T d1z0fa1 13 MGVGKSCLLHQFTEKKFMA 31 (166)
T ss_dssp TTSSHHHHHHHHHHSCCCS
T ss_pred CCcCHHHHHHHHHhCCCCC
Confidence 5779999999999876433
No 18
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=30.39 E-value=24 Score=19.27 Aligned_cols=49 Identities=20% Similarity=0.074 Sum_probs=28.7
Q ss_pred EEEEE-cChhHHHHHHHHHhcCCccccccceeee-------cCcEEEEEeHHHhhhh
Q psy2121 7 VMILI-TGSHKAFALYKAIEEGVNHMWTVSAFQM-------HPCTIMICDEDATQEL 55 (66)
Q Consensus 7 v~~lv-~G~~Ka~al~~~l~~~~~~~~Pas~l~~-------h~~~~~~lD~~Aa~~l 55 (66)
|+++. +|.+|..+.+.+++.-+.-.++.+.... .+.-.+|++++.-..+
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~ 61 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQL 61 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhh
Confidence 44444 3888999999888653322344444321 2334678887765544
No 19
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=29.40 E-value=20 Score=20.47 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=19.7
Q ss_pred ChhHHHHHHHHHhcCCcc--ccccceee
Q psy2121 13 GSHKAFALYKAIEEGVNH--MWTVSAFQ 38 (66)
Q Consensus 13 G~~Ka~al~~~l~~~~~~--~~Pas~l~ 38 (66)
|.. -++|.++|-|+.++ .+|.|+-+
T Consensus 159 G~~-G~AladvL~G~~nPSGKLP~T~p~ 185 (214)
T d1x38a2 159 GSE-GQGVTDALFGDFGFTGRLPRTWFK 185 (214)
T ss_dssp CSB-THHHHHHHTTSSCCCCCCSSCBCS
T ss_pred ccc-chHHHHHhccCCCCCccCCccccC
Confidence 776 67999999998765 68888744
No 20
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.10 E-value=19 Score=19.04 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=18.0
Q ss_pred EEEEE-cChhHHHHHHHHHhcCCccc
Q psy2121 7 VMILI-TGSHKAFALYKAIEEGVNHM 31 (66)
Q Consensus 7 v~~lv-~G~~Ka~al~~~l~~~~~~~ 31 (66)
|+++. .|.||...+.+.+.+...+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~~~~~~ 30 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAGRFPDR 30 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSCCSS
T ss_pred EEEECCCCcCHHHHHHHHHhCCCCCc
Confidence 44443 57799999999998765433
No 21
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=28.94 E-value=18 Score=19.12 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=19.1
Q ss_pred EEEEEEcChhHHHHHHHHHhc
Q psy2121 6 MVMILITGSHKAFALYKAIEE 26 (66)
Q Consensus 6 ~v~~lv~G~~Ka~al~~~l~~ 26 (66)
+|+|.+.+++.++-+..+|..
T Consensus 36 ~Vli~a~s~g~~erl~e~L~~ 56 (117)
T d2eyqa2 36 PVVFSVESEGRREALGELLAR 56 (117)
T ss_dssp CCCEEESSHHHHHHHHHHHGG
T ss_pred eEEEEECCccHHHHHHHHHHH
Confidence 589999999999999999975
No 22
>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]}
Probab=25.40 E-value=26 Score=18.43 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=13.0
Q ss_pred cEEEEEEcChhHHHHHHHHH
Q psy2121 5 LMVMILITGSHKAFALYKAI 24 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~l 24 (66)
|+|+|+++|--=+.-+++.+
T Consensus 2 K~ILFVC~gN~cRSpmAEai 21 (137)
T d1jl3a_ 2 KIIYFLCTGNSCRSQMAEGW 21 (137)
T ss_dssp EEEEEEESSSSSHHHHHHHH
T ss_pred CEEEEEeCCChhHHHHHHHH
Confidence 56899999876555444433
No 23
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.77 E-value=36 Score=17.86 Aligned_cols=20 Identities=5% Similarity=0.049 Sum_probs=15.6
Q ss_pred EcChhHHHHHHHHHhcCCcc
Q psy2121 11 ITGSHKAFALYKAIEEGVNH 30 (66)
Q Consensus 11 v~G~~Ka~al~~~l~~~~~~ 30 (66)
-.|.+|...+.+.+.+....
T Consensus 8 ~~~vGKTsLi~r~~~~~~~~ 27 (164)
T d1yzqa1 8 EQSVGKTSLITRFMYDSFDN 27 (164)
T ss_dssp STTSSHHHHHHHHHHSCCCS
T ss_pred CCCcCHHHHHHHHHhCCCCC
Confidence 35789999999999876443
No 24
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.43 E-value=35 Score=18.18 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=15.8
Q ss_pred EcChhHHHHHHHHHhcCCcccc
Q psy2121 11 ITGSHKAFALYKAIEEGVNHMW 32 (66)
Q Consensus 11 v~G~~Ka~al~~~l~~~~~~~~ 32 (66)
-+|.||...+.+.+.+...+.+
T Consensus 14 ~~~vGKSSli~~~~~~~~~~~~ 35 (174)
T d1wmsa_ 14 DGGVGKSSLMNRYVTNKFDTQL 35 (174)
T ss_dssp CTTSSHHHHHHHHHHSCCCC--
T ss_pred CCCCCHHHHHHHHHhCCCCCcc
Confidence 3678999999999987644333
No 25
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.13 E-value=40 Score=17.85 Aligned_cols=21 Identities=5% Similarity=0.085 Sum_probs=16.5
Q ss_pred EcChhHHHHHHHHHhcCCccc
Q psy2121 11 ITGSHKAFALYKAIEEGVNHM 31 (66)
Q Consensus 11 v~G~~Ka~al~~~l~~~~~~~ 31 (66)
-.|.||...+.+.+.+.....
T Consensus 14 ~~~vGKTsLi~~l~~~~f~~~ 34 (170)
T d1r2qa_ 14 ESAVGKSSLVLRFVKGQFHEF 34 (170)
T ss_dssp STTSSHHHHHHHHHHSCCCTT
T ss_pred CCCcCHHHHHHHHHhCCCCcc
Confidence 368899999999998775433
No 26
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=23.65 E-value=33 Score=17.83 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=23.0
Q ss_pred eeeecCcEEEEEeHHHhhhhhHhhHHhhh
Q psy2121 36 AFQMHPCTIMICDEDATQELRVKTVKYFK 64 (66)
Q Consensus 36 ~l~~h~~~~~~lD~~Aa~~l~~~~~~y~~ 64 (66)
++..+++-+.+.|.+.-..+..+..+|++
T Consensus 61 lI~~~~~~i~I~D~~~L~~~A~~~de~~~ 89 (100)
T d2bgca1 61 VIVYKNSCFYVQNLDYLKRYAPKLDEWFY 89 (100)
T ss_dssp SEEEETTEEEESCHHHHHHHCHHHHHHHH
T ss_pred CEEEcCCEEEEeCHHHHHHHhcccchhhh
Confidence 45566777889999998888877888875
No 27
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.65 E-value=49 Score=17.71 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=15.5
Q ss_pred cChhHHHHHHHHHhcCCccc
Q psy2121 12 TGSHKAFALYKAIEEGVNHM 31 (66)
Q Consensus 12 ~G~~Ka~al~~~l~~~~~~~ 31 (66)
+|.||...+.+.+.+.....
T Consensus 14 ~~vGKTsLi~~l~~~~~~~~ 33 (186)
T d2f7sa1 14 SGVGKTTFLYRYTDNKFNPK 33 (186)
T ss_dssp TTSSHHHHHHHHHCSCCCCE
T ss_pred CCcCHHHHHHHHhcCCCCCc
Confidence 56799999999998765433
No 28
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.52 E-value=39 Score=18.68 Aligned_cols=44 Identities=7% Similarity=0.043 Sum_probs=25.7
Q ss_pred cChhHHHHHHHHHhcCCc-cccccceee-------ecCcEEEEEeHHHhhhh
Q psy2121 12 TGSHKAFALYKAIEEGVN-HMWTVSAFQ-------MHPCTIMICDEDATQEL 55 (66)
Q Consensus 12 ~G~~Ka~al~~~l~~~~~-~~~Pas~l~-------~h~~~~~~lD~~Aa~~l 55 (66)
+|.+|..+++++++..+. =.++.+.-. .++.-+.|++++.-..+
T Consensus 12 sg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~ 63 (178)
T d1kgda_ 12 HGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD 63 (178)
T ss_dssp TTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhh
Confidence 588999999999865322 123333311 12334677777665443
No 29
>d1tdha3 g.39.1.8 (A:247-290) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.46 E-value=19 Score=16.60 Aligned_cols=33 Identities=15% Similarity=-0.168 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHhcCCccccccceeeecCcEEEEE
Q psy2121 14 SHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMIC 47 (66)
Q Consensus 14 ~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~l 47 (66)
++--.+.++.|..=..+.. .|+.-.|++++||-
T Consensus 4 e~~ys~F~~WLqCY~~pgM-~sL~D~~GRTIWF~ 36 (44)
T d1tdha3 4 EEDFAAFRAWLRCYGMPGM-SSLQDRHGRTIWFQ 36 (44)
T ss_dssp HHHHHHHHHHCSSTTCTTC-EEEECTTSCEEEES
T ss_pred hhHHHHHHHHHHHHcCCch-hhhhccCCCEEEec
Confidence 3344455666653221211 33444578999993
No 30
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=22.45 E-value=24 Score=16.64 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=13.4
Q ss_pred EEEcChhHHHHHHHHHh
Q psy2121 9 ILITGSHKAFALYKAIE 25 (66)
Q Consensus 9 ~lv~G~~Ka~al~~~l~ 25 (66)
+..-|.+|++|+.++++
T Consensus 24 ~~~LG~d~~~A~~~Aie 40 (49)
T d1z1ba1 24 EFGLGRDRRIAITEAIQ 40 (49)
T ss_dssp EEEEESCHHHHHHHHHH
T ss_pred eecCCccHHHHHHHHHH
Confidence 45678899999988775
No 31
>d1dg9a_ c.44.1.1 (A:) Tyrosine phosphatase {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.42 E-value=32 Score=18.38 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=12.4
Q ss_pred cEEEEEEcChhHHHHHHHH
Q psy2121 5 LMVMILITGSHKAFALYKA 23 (66)
Q Consensus 5 ~~v~~lv~G~~Ka~al~~~ 23 (66)
++|+|+++|--=+..++..
T Consensus 6 k~ILFVCtgN~cRSpmAEa 24 (157)
T d1dg9a_ 6 KSVLFVCLGNICRSPIAEA 24 (157)
T ss_dssp EEEEEEESSSSSHHHHHHH
T ss_pred CeEEEEeCCcHHHHHHHHH
Confidence 3599999997655544333
No 32
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.27 E-value=54 Score=17.22 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=18.7
Q ss_pred EEEEEE-cChhHHHHHHHHHhcCCcccc
Q psy2121 6 MVMILI-TGSHKAFALYKAIEEGVNHMW 32 (66)
Q Consensus 6 ~v~~lv-~G~~Ka~al~~~l~~~~~~~~ 32 (66)
+|+++. .|-||...+.+.+.+.....+
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~f~~~~ 32 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGIFVEKY 32 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCcc
Confidence 455554 455999999999988754433
No 33
>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus [TaxId: 5724]}
Probab=22.11 E-value=12 Score=20.09 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=7.3
Q ss_pred cEEEEEEcChh
Q psy2121 5 LMVMILITGSH 15 (66)
Q Consensus 5 ~~v~~lv~G~~ 15 (66)
++|+|+++|--
T Consensus 5 ~~VLFVC~gN~ 15 (146)
T d1p8aa_ 5 KAVLFVCLGNI 15 (146)
T ss_dssp CCEEEESSSSC
T ss_pred CEEEEEECCcH
Confidence 45778877743
No 34
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=21.94 E-value=45 Score=16.96 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=11.9
Q ss_pred cChhHHHHHHHHHhc
Q psy2121 12 TGSHKAFALYKAIEE 26 (66)
Q Consensus 12 ~G~~Ka~al~~~l~~ 26 (66)
+|+||....++++..
T Consensus 11 pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 11 PGSGKSTWAREFIAK 25 (152)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 789999988877653
No 35
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.27 E-value=38 Score=17.88 Aligned_cols=20 Identities=15% Similarity=0.032 Sum_probs=15.8
Q ss_pred cChhHHHHHHHHHhcCCccc
Q psy2121 12 TGSHKAFALYKAIEEGVNHM 31 (66)
Q Consensus 12 ~G~~Ka~al~~~l~~~~~~~ 31 (66)
.|-||...+.+.+.+...+.
T Consensus 12 ~~vGKTsLi~r~~~~~f~~~ 31 (167)
T d1z08a1 12 GCVGKTSLVLRYCENKFNDK 31 (167)
T ss_dssp TTSCHHHHHHHHHHCCCCSS
T ss_pred CCcCHHHHHHHHHhCCCCcc
Confidence 67899999999998765443
No 36
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.70 E-value=23 Score=16.57 Aligned_cols=13 Identities=15% Similarity=-0.169 Sum_probs=9.8
Q ss_pred cChhHHHHHHHHHh
Q psy2121 12 TGSHKAFALYKAIE 25 (66)
Q Consensus 12 ~G~~Ka~al~~~l~ 25 (66)
+| .|++.+.++.+
T Consensus 35 sG-kKa~Li~Ri~~ 47 (51)
T d1jeqa1 35 GL-KKQELLEALTK 47 (51)
T ss_dssp CS-SHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHH
Confidence 44 88998888764
No 37
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=20.28 E-value=30 Score=18.29 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHhcCCc
Q psy2121 14 SHKAFALYKAIEEGVN 29 (66)
Q Consensus 14 ~~Ka~al~~~l~~~~~ 29 (66)
..|+++|..++.|..+
T Consensus 37 ~RKaaVV~av~~Gl~S 52 (93)
T d2oa4a1 37 SRKIAVVRGVIYGLIT 52 (93)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCcCC
Confidence 5799999999999765
No 38
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.15 E-value=52 Score=17.27 Aligned_cols=44 Identities=11% Similarity=-0.013 Sum_probs=24.6
Q ss_pred EEEEEE-cChhHHHHHHHHHhcCCcc-ccccceeeecCcEEEEEeH
Q psy2121 6 MVMILI-TGSHKAFALYKAIEEGVNH-MWTVSAFQMHPCTIMICDE 49 (66)
Q Consensus 6 ~v~~lv-~G~~Ka~al~~~l~~~~~~-~~Pas~l~~h~~~~~~lD~ 49 (66)
+|+++. .|.||-.+|++...+..++ ..+..-+....-...+.|-
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~~~~~~~~~~~~~i~D~ 49 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDV 49 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEEEEEEEeeeeeeeeecc
Confidence 455554 5789999999988765433 2333223333333344454
Done!