RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2121
(66 letters)
>gnl|CDD|179028 PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional.
Length = 261
Score = 90.3 bits (225), Expect = 3e-24
Identities = 30/60 (50%), Positives = 39/60 (65%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFKRL 66
+M+L G +KA A+ A+E VNHMW S Q+HP ++ DE A EL+VKTVKYF L
Sbjct: 199 IMLLAPGHNKAEAVKAAVEGPVNHMWPASILQLHPKATLVLDEAAASELKVKTVKYFTEL 258
>gnl|CDD|129593 TIGR00502, nagB, glucosamine-6-phosphate isomerase. The set of
proteins recognized by This model includes a closely
related pair from Bacillus subtilis, one of which is
uncharacterized but included as a member of the
orthologous set [Central intermediary metabolism, Amino
sugars].
Length = 259
Score = 87.6 bits (217), Expect = 3e-23
Identities = 38/60 (63%), Positives = 49/60 (81%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFKRL 66
V+IL++G KA AL KA+E GVNHMWT+SA Q+H I++CDE+ATQEL+VKTV+YF L
Sbjct: 199 VLILVSGHQKALALQKAVEGGVNHMWTISALQLHKHAIVVCDENATQELKVKTVEYFNEL 258
>gnl|CDD|140308 PTZ00285, PTZ00285, glucosamine-6-phosphate isomerase; Provisional.
Length = 253
Score = 86.0 bits (213), Expect = 1e-22
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 2 SRELMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVK 61
+RE V++L TG+ KA A+ + +E GV HM SA QMHP ++ DEDAT EL+VKT K
Sbjct: 196 ARE--VLLLATGASKAIAVARCVEGGVTHMCPASALQMHPAAVLCLDEDATLELKVKTTK 253
>gnl|CDD|238693 cd01399, GlcN6P_deaminase, GlcN6P_deaminase:
Glucosamine-6-phosphate (GlcN6P) deaminase subfamily;
GlcN6P deaminase catalyzes the reversible conversion of
GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium.
The reaction is an aldo-keto isomerization coupled with
an amination or deamination. It is the last step of the
metabolic pathway of N-acetyl-D-glucosamine-6-phosphate
(GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that
is allosterically activated by GlcNAc6P.
Length = 232
Score = 73.3 bits (181), Expect = 6e-18
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55
+++L TG KA A+ KA+E V S Q+HP +I DE A EL
Sbjct: 184 ILLLATGEGKAEAVKKALEGPVTEECPASILQLHPNVTVILDEAAASEL 232
>gnl|CDD|223440 COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate
isomerase/deaminase [Carbohydrate transport and
metabolism].
Length = 238
Score = 58.0 bits (141), Expect = 4e-12
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 6 MVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRV 57
V++L+TG KA AL +A+E V ++ S Q+HP DE+A L+V
Sbjct: 187 EVLLLVTGEEKADALKQALEGPVTELYPASILQLHPNVTWFLDEEAASLLKV 238
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate
Isomerase family; includes type A ribose 5-phosphate
isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P)
deaminase, and 6-phosphogluconolactonase (6PGL). RPI
catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to
D-fructose-6-phosphate (Fru6P) and ammonium, the last
step of the metabolic pathway of
N-acetyl-D-glucosamine-6-phosphate. 6PGL converts
6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the
second step of the oxidative phase of the pentose
phosphate pathway.
Length = 169
Score = 48.1 bits (114), Expect = 1e-08
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 3 RELMVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMIC 47
R V++L+ G K L + E GV + + I+I
Sbjct: 125 RAGTVIVLVDGRKKVDYLCQNTEPGVIENGIFADIRGKEKDIVIV 169
>gnl|CDD|235005 PRK02122, PRK02122, glucosamine-6-phosphate deaminase-like protein;
Validated.
Length = 652
Score = 34.2 bits (79), Expect = 0.001
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL-RVKT 59
+++L G HKA + +A+E ++ S Q HP + D A EL R+KT
Sbjct: 226 IVLLAWGEHKAPIIKRAVEGEISDEVPASYLQEHPNATFVLDLAAASELTRIKT 279
>gnl|CDD|183470 PRK12358, PRK12358, putative 6-phosphogluconolactonase;
Provisional.
Length = 239
Score = 34.0 bits (78), Expect = 0.002
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55
+++++ G KA L K ++ V S Q+HP +I DE A EL
Sbjct: 189 LLLIVNGKGKAQILKKVLQGPVTEDVPASILQLHPNLTVILDEAAAAEL 237
>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane [Transport and
binding proteins, Cations and iron carrying compounds,
Energy metabolism, Other].
Length = 582
Score = 25.5 bits (56), Expect = 2.2
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 19 ALYKAIEEGVNHMWT-VSAFQM---HPCT 43
AL KAIE G + + T +S+ HP T
Sbjct: 209 ALLKAIEAGADGIDTAISSMSGGTSHPPT 237
>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family. Tubulins and
microtubules are subjected to several post-translational
modifications of which the reversible
detyrosination/tyrosination of the carboxy-terminal end
of most alpha-tubulins has been extensively analysed.
This modification cycle involves a specific
carboxypeptidase and the activity of the
tubulin-tyrosine ligase (TTL). The true physiological
function of TTL has so far not been established.
Tubulin-tyrosine ligase (TTL) catalyzes the
ATP-dependent post-translational addition of a tyrosine
to the carboxy terminal end of detyrosinated
alpha-tubulin. In normally cycling cells, the
tyrosinated form of tubulin predominates. However, in
breast cancer cells, the detyrosinated form frequently
predominates, with a correlation to tumour
aggressiveness. On the other hand, 3-nitrotyrosine has
been shown to be incorporated, by TTL, into the carboxy
terminal end of detyrosinated alpha-tubulin. This
reaction is not reversible by the carboxypeptidase
enzyme. Cells cultured in 3-nitrotyrosine rich medium
showed evidence of altered microtubule structure and
function, including altered cell morphology, epithelial
barrier dysfunction, and apoptosis. Bacterial homologs
of TTL are predicted to form peptide tags. Some of these
are fused to a 2-oxoglutarate Fe(II)-dependent
dioxygenase domain.
Length = 291
Score = 25.0 bits (55), Expect = 2.8
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 16 KAFALYKAIEEGVNHMWTVSAFQMH 40
K+ +L + E H W++ F +
Sbjct: 170 KSSSLNEDYNEPNGHKWSLFNFWKY 194
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 25.0 bits (55), Expect = 3.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 9 ILITGSHKAFA 19
I+ITGS KAFA
Sbjct: 52 IVITGSEKAFA 62
>gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase; Reviewed.
Length = 227
Score = 24.7 bits (55), Expect = 3.8
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 31 MWTVSAFQMHPC---TIMICDEDATQELRVKTVKYFKR 65
T+ AF HP I++ D + + +
Sbjct: 35 EHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPK 72
>gnl|CDD|199853 cd03872, M14_CPA6, Peptidase M14 carboxypeptidase subfamily
A/B-like; Carboxypeptidase A6 subgroup.
Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC
3.4.17.1), belongs to the carboxypeptidase A/B subfamily
of the M14 family of metallocarboxypeptidases (MCPs).
The M14 family are zinc-binding CPs which hydrolyze
single, C-terminal amino acids from polypeptide chains,
and have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. CPA6 prefers large hydrophobic C-terminal
amino acids as well as histidine, while peptides with a
penultimate glycine or proline are very poorly cleaved.
Several neuropeptides are processed by CPA6, including
Met- and Leu-enkephalin, angiotensin I, and neurotensin.
CPA6 converts enkephalin and neurotensin into forms
known to be inactive toward their receptors, but
converts inactive angiotensin I into the biologically
active angiotensin II. Thus, CPA6 plays a possible role
in the regulation of neuropeptides in the extracellular
environment within the olfactory bulb where it is highly
expressed. It is also broadly expressed in embryonic
tissue, being found in neuronal tissues, bone, skin as
well as the lateral rectus eye muscle. A disruption in
the CPA6 gene is linked to Duane syndrome, a defect in
the abducens nerve/lateral rectus muscle connection.
Length = 300
Score = 24.6 bits (53), Expect = 4.1
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 32 WTVSAFQMHPCTIMICDEDATQELRVKTVKYFKR 65
W +HPC C E VK V F R
Sbjct: 142 WCDEGASLHPCDDTYCGPFPESEPEVKAVAQFLR 175
>gnl|CDD|236694 PRK10436, PRK10436, hypothetical protein; Provisional.
Length = 462
Score = 24.1 bits (53), Expect = 6.4
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 8 MILITG---SHKAFALYKAIE 25
+IL+TG S K LY A++
Sbjct: 220 LILVTGPTGSGKTVTLYSALQ 240
>gnl|CDD|144537 pfam00979, Reovirus_cap, Reovirus outer capsid protein, Sigma 3.
Sigma 3 is the major outer capsid protein of reovirus.
Sigma 3 is encoded by genome segment 4. Sigma 3 binds to
double stranded RNA and associates with polypeptide u1
and its cleavage product u1C to form the outer shell of
the virion. The Sigma 3 protein possesses a zinc-finger
motif and an RNA-binding domain in the N and C termini
respectively. This protein is also thought to play a
role in pathogenesis.
Length = 367
Score = 24.1 bits (52), Expect = 6.5
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 56
V + GS K + Y+ + V H W+ S+F + E A E R
Sbjct: 279 VGHPVIGSTKKASHYRNLFMEVWHGWSKSSF-----RCALGLEPAEWESR 323
>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 23.7 bits (52), Expect = 8.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 4 ELMVMILITGSHKAFAL 20
E + + ITGS KA
Sbjct: 181 EWGIDVAITGSQKALGA 197
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.134 0.406
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,196,508
Number of extensions: 221184
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 16
Length of query: 66
Length of database: 10,937,602
Length adjustment: 37
Effective length of query: 29
Effective length of database: 9,296,504
Effective search space: 269598616
Effective search space used: 269598616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)