RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2121
(66 letters)
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic
effects, aldose-ketose isomerase multiple conformers,
isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP:
c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A
1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Length = 266
Score = 97.8 bits (244), Expect = 3e-27
Identities = 36/60 (60%), Positives = 45/60 (75%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFKRL 66
VMIL+ GS KA AL A+E VNHMWT+S Q+HP IM+CDE +T EL+VKT++YF L
Sbjct: 199 VMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYFNEL 258
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI,
infectious disease, LYME DI non-hodgkin lymphomas,
neuroborreliosis; 2.20A {Borrelia burgdorferi}
Length = 289
Score = 97.5 bits (243), Expect = 5e-27
Identities = 32/60 (53%), Positives = 46/60 (76%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFKRL 66
V+I++ G +KA AL AIE+GVNHMWT+SA Q+H I++ D++AT EL+V TV+YF +
Sbjct: 220 VLIIVNGHNKARALKHAIEKGVNHMWTISALQLHKNAIIVSDKNATYELKVGTVEYFNDI 279
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme,
conformational disorder, conformational differences,
hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP:
c.124.1.1
Length = 289
Score = 95.6 bits (238), Expect = 3e-26
Identities = 50/58 (86%), Positives = 54/58 (93%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFK 64
VMILITG+HKAFALYKAIEEGVNHMWTVSAFQ HP T+ +CDEDAT EL+VKTVKYFK
Sbjct: 199 VMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFK 256
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET:
BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Length = 234
Score = 79.2 bits (196), Expect = 2e-20
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55
++++ G KA A+ ++ V S Q HP I+I DE A +
Sbjct: 186 ILLMAFGEEKAEAVAAMVKGPVTEEIPASILQTHPKVILIVDEKAGAGI 234
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition,
fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis}
PDB: 2bkv_A*
Length = 242
Score = 75.1 bits (185), Expect = 8e-19
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDA 51
+++LI+G KA A+ K +E ++ + SA +H ++ D +A
Sbjct: 193 ILLLISGKSKAEAVRKLLEGNISEDFPASALHLHSDVTVLIDREA 237
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, carboxylic
ester hydrolase; 2.10A {Mycobacterium smegmatis}
Length = 248
Score = 49.2 bits (118), Expect = 3e-09
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55
V ++++G KA A+ A+ + T+ + DE A +L
Sbjct: 200 VWLVVSGEAKADAVAAAVGGADPVDIPAAGAVGRERTVWLVDEAAAAKL 248
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A
{Mycobacterium abscessus}
Length = 251
Score = 46.1 bits (110), Expect = 5e-08
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55
V ++++G KA A+ A+ + + T+ + DE A +L
Sbjct: 202 VWLVVSGEAKADAVAAAVGGADPVDVPAAGAKGIERTVWLLDEAAASQL 250
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid,
hydrolase, structural genomics; 2.15A {Mycobacterium
tuberculosis}
Length = 268
Score = 45.0 bits (107), Expect = 2e-07
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 55
V +L++G KA A+ AI + T+ + D DA +L
Sbjct: 218 VWLLVSGPGKADAVAAAIGGADPVSVPAAGAVGRQNTLWLLDRDAAAKL 266
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate
pathway, hydrolase, zinc binding site; HET: FLC; 2.00A
{Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Length = 266
Score = 41.3 bits (97), Expect = 3e-06
Identities = 7/50 (14%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQ-MHPCTIMICDEDATQEL 55
V++L TG+ K + + + + + + + D++ + L
Sbjct: 214 VIVLATGAEKKWVVDGILADTAHKAPVARFLRGCEGNVSFLLDKEIAENL 263
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase,
malaria, carbohydrate metabolism, glucose metabolism,
NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium
vivax}
Length = 312
Score = 40.3 bits (94), Expect = 7e-06
Identities = 3/50 (6%), Positives = 12/50 (24%), Gaps = 4/50 (8%)
Query: 7 VMILITGSHKAFALYKAIEEGVN----HMWTVSAFQMHPCTIMICDEDAT 52
+ L+ + K + + ++ T ++
Sbjct: 247 KIFLLNSTDKLDLWKNMLLKSYVDVNYCLYPAVYLIDSMNTTVVTCGYTN 296
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural
genomics of pathogen protozoa consortium, SGPP, leish
hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Length = 267
Score = 36.5 bits (84), Expect = 1e-04
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAF--QMHPCTIMICDEDATQEL 55
V++L G K + + + E VS F ++ D A + +
Sbjct: 215 VVVLAAGKDKNWVVRGVLSESPTDPLPVSRFLRDCRGSVTLLLDPGAGEGV 265
>1y89_A DEVB protein; structural genomics, protein structure initiative,
PSI, MIDW center for structural genomics, MCSG; HET:
2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Length = 238
Score = 35.3 bits (82), Expect = 3e-04
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHM-WTVSAFQ-MHPCTIMICDEDATQEL 55
+ L+ G+ KA + + + + + T D DA ++
Sbjct: 187 ISYLVLGAGKAEIVEQIHTTPAEQLPYPAAKIHSTSGVTEWYLDSDAAAKI 237
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A
{Shewanella baltica}
Length = 233
Score = 29.3 bits (66), Expect = 0.046
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCT 43
+ + + G K +A+E H + A T
Sbjct: 189 IYLHLVGEQKLSVYRQALESDDVHAMPIRAVLAQRKT 225
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.10
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 28 VNHMWTVSAFQMHPCTIMIC--DEDATQELRVKTVKYF 63
V + +AF + C I++ + T L T +
Sbjct: 253 VQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHI 289
Score = 25.6 bits (55), Expect = 1.4
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 46 ICDEDATQELRVKTVKYF 63
ICD D E V + F
Sbjct: 534 ICDNDPKYERLVNAILDF 551
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme,
thermostability, TIM barrel, alkylglucosides; 2.50A
{Pyrococcus horikoshii} SCOP: c.1.8.4
Length = 423
Score = 27.5 bits (62), Expect = 0.22
Identities = 6/19 (31%), Positives = 12/19 (63%), Gaps = 4/19 (21%)
Query: 19 ALYKAIEEGVN----HMWT 33
++KAIE+G++ W+
Sbjct: 345 YVHKAIEDGLDVRGYFYWS 363
>3apg_A Beta-glucosidase; TIM barrel, hydrolase, sugar binding, hydrolysis;
2.35A {Pyrococcus furiosus}
Length = 473
Score = 26.5 bits (59), Expect = 0.54
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 19 ALYKAIEEGVN----HMWT 33
A+Y A++EG + W+
Sbjct: 394 AVYNAMKEGADVRGYLHWS 412
>1pbg_A PGAL, 6-phospho-beta-D-galactosidase; hydrolase (glycosyl
hydrolase); 2.30A {Lactococcus lactis} SCOP: c.1.8.4
PDB: 3pbg_A 2pbg_A 4pbg_A*
Length = 468
Score = 26.4 bits (59), Expect = 0.62
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 4/19 (21%)
Query: 19 ALYKAIEEGVN----HMWT 33
L AI +G N +W+
Sbjct: 404 VLSDAIADGANVKGYFIWS 422
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; HET: 7PE; 1.90A {Clostridium
cellulovorans}
Length = 453
Score = 25.5 bits (57), Expect = 1.1
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Query: 19 ALYKAIEEGVN----HMWT 33
A AIE GV ++W+
Sbjct: 382 AALSAIEAGVPLKGYYIWS 400
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A
{Halothermothrix orenii}
Length = 458
Score = 25.5 bits (57), Expect = 1.2
Identities = 6/19 (31%), Positives = 12/19 (63%), Gaps = 4/19 (21%)
Query: 19 ALYKAIEEGVN----HMWT 33
YKA+++GV ++W+
Sbjct: 391 QAYKALKDGVPLRGYYVWS 409
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima}
SCOP: c.124.1.1 PDB: 1pbt_A
Length = 232
Score = 25.3 bits (56), Expect = 1.4
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDE 49
V+ LI G K L + +++ + T+ +
Sbjct: 193 VLFLIRGKEKINRLTEILKDT---PLPAYFVRGKEKTVWFVGK 232
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium
marinum}
Length = 277
Score = 25.2 bits (56), Expect = 1.4
Identities = 3/11 (27%), Positives = 8/11 (72%)
Query: 9 ILITGSHKAFA 19
+++ G H+ F+
Sbjct: 71 VVLFGGHEIFS 81
>3fj0_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase; HET: BGC; 1.15A
{Uncultured bacterium} PDB: 3cmj_A 3fiz_A* 3fiy_A*
Length = 465
Score = 25.2 bits (56), Expect = 1.4
Identities = 5/19 (26%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 19 ALYKAIEEGVN----HMWT 33
A +A+ +GV+ + W+
Sbjct: 400 AARRALADGVDLRGYYAWS 418
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.33A {Neisseria
gonorrhoeae}
Length = 232
Score = 25.0 bits (55), Expect = 1.6
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 7 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHP 41
V + I G K +A +G N + +S H
Sbjct: 189 VFLAIQGEEKKAVFDQAA-QGENREYPISLVLNHQ 222
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A
{Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Length = 540
Score = 25.0 bits (55), Expect = 2.1
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 19 ALYKAIEEGVN 29
+ +A+ +GVN
Sbjct: 452 NVRQAMNDGVN 462
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 24.8 bits (55), Expect = 2.2
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 9 ILITGSHKAFA 19
I++TGS +AFA
Sbjct: 58 IVVTGSERAFA 68
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: FLC PG4; 1.82A {Bacillus
anthracis}
Length = 261
Score = 24.8 bits (55), Expect = 2.4
Identities = 3/11 (27%), Positives = 7/11 (63%)
Query: 9 ILITGSHKAFA 19
++I G + F+
Sbjct: 53 VVIHGEGRFFS 63
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 24.4 bits (54), Expect = 2.7
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 9 ILITGSHKAFA 19
I++TG KAFA
Sbjct: 55 IVLTGGEKAFA 65
>1qvb_A Beta-glycosidase; TIM-barrel, thermostable, hydrolase; 2.40A
{Thermosphaera aggregans} SCOP: c.1.8.4
Length = 481
Score = 24.6 bits (54), Expect = 3.0
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 19 ALYKAIEEGVN 29
+++KA EG+
Sbjct: 407 SVWKAANEGIP 417
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
TTHA0171, ISPD_THET8, ISPD, structural genomics PSI;
2.20A {Thermus thermophilus HB8}
Length = 236
Score = 24.5 bits (54), Expect = 3.0
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 31 MWTVSAFQMHPCTIMICDEDATQ--ELRVKTV 60
WT++AF+ ++ A L +
Sbjct: 56 EWTLAAFRDAAEVLVALPPGAEPPKGLGAVFL 87
>4eam_A Lactase, beta-galactosidase; glycoside hydrolase, chemical biology,
allosteric activation switchable enzyme, chemical
rescue; 1.70A {Sulfolobus solfataricus P2} PDB: 4ean_A
1uws_A* 1uwr_A* 1uwq_A* 1uwt_A* 1uwu_A* 2ceq_A* 2cer_A*
1gow_A 1uwi_A
Length = 489
Score = 24.2 bits (53), Expect = 3.2
Identities = 4/19 (21%), Positives = 9/19 (47%), Gaps = 4/19 (21%)
Query: 19 ALYKAIEEGVN----HMWT 33
+++AI G + W+
Sbjct: 408 QVHRAINSGADVRGYLHWS 426
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural
genomics/PR initiative, RSGI, structural genomics,
hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4
PDB: 1np2_A
Length = 431
Score = 24.4 bits (54), Expect = 3.4
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 19 ALYKAIEEGVN----HMWT 33
A +A EEGV+ +W+
Sbjct: 368 AALRAREEGVDLRGYFVWS 386
>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor,
PEST defense, family GH1, hydrolase, chloroplast,
transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays}
SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A*
1e1e_A 1e1f_A* 1h49_A* 1hxj_A
Length = 512
Score = 24.1 bits (53), Expect = 3.8
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 19 ALYKAIEEGVN 29
L ++I+ G N
Sbjct: 440 TLKESIDLGSN 450
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase,
hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A*
3ptq_A*
Length = 505
Score = 24.1 bits (53), Expect = 3.8
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 19 ALYKAIEEGVN 29
+L AI +G N
Sbjct: 444 SLLSAIRDGAN 454
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
PEST defense, family GH1, hydrolase; 1.9A {Sorghum
bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
Length = 565
Score = 24.1 bits (53), Expect = 3.8
Identities = 3/11 (27%), Positives = 7/11 (63%)
Query: 19 ALYKAIEEGVN 29
L ++I+ G +
Sbjct: 487 VLKQSIDLGAD 497
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum
aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A*
3aiw_A*
Length = 565
Score = 24.1 bits (53), Expect = 4.0
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 19 ALYKAIEEGVN 29
A+ AI++G +
Sbjct: 483 AVKDAIDQGAD 493
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease,
MPCS, fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 24.1 bits (53), Expect = 4.0
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 9 ILITGSHKAFA 19
I+ITGS KAFA
Sbjct: 73 IIITGSAKAFA 83
>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase, covalent
enzyme-GLYC intermediate, alpha/beta barrel; HET: G2F
NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A
1bgg_A* 1bga_A 1uyq_A*
Length = 447
Score = 24.0 bits (53), Expect = 4.1
Identities = 3/19 (15%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Query: 19 ALYKAIEEGVN----HMWT 33
+++ I +G++ W+
Sbjct: 380 QVHRTIHDGLHVKGYMAWS 398
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 24.0 bits (53), Expect = 4.2
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 9 ILITGSHKAFA 19
I++TG +AFA
Sbjct: 53 IVLTGRGRAFA 63
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 23.7 bits (52), Expect = 4.4
Identities = 3/11 (27%), Positives = 9/11 (81%)
Query: 9 ILITGSHKAFA 19
+++TG+ +A+
Sbjct: 57 LVLTGAGEAWT 67
>1cbg_A Cyanogenic beta-glucosidase; hydrolase (O-glycosyl); 2.15A
{Trifolium repens} SCOP: c.1.8.4
Length = 490
Score = 24.0 bits (53), Expect = 4.5
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 19 ALYKAIEEGVN 29
+ AI +GVN
Sbjct: 429 YVLTAIGDGVN 439
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET:
LB2 MES; 1.37A {Oryza sativa japonica group} PDB:
3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A*
2rgl_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*
Length = 481
Score = 23.6 bits (52), Expect = 5.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 19 ALYKAIEEGVN 29
L KAI+EG N
Sbjct: 421 QLKKAIDEGAN 431
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase;
HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB:
1jxz_A* 1nzy_B*
Length = 269
Score = 23.7 bits (52), Expect = 5.2
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 9 ILITGSHKAFA 19
++ITG+ AF
Sbjct: 51 VMITGAEDAFC 61
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious
disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis}
PDB: 3p85_A* 3qyr_A
Length = 256
Score = 23.3 bits (51), Expect = 7.0
Identities = 3/11 (27%), Positives = 7/11 (63%)
Query: 9 ILITGSHKAFA 19
+++TG+ F
Sbjct: 57 VIVTGADPVFC 67
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 23.2 bits (51), Expect = 7.5
Identities = 3/11 (27%), Positives = 7/11 (63%)
Query: 9 ILITGSHKAFA 19
++TG+ A+
Sbjct: 57 AILTGAGSAYC 67
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid
metabolism, lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 23.3 bits (51), Expect = 7.5
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 9 ILITGSHKAFA 19
I++TG AF
Sbjct: 68 IVLTGQGTAFC 78
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase
sigma factor, transcription regulation; 2.60A
{Escherichia coli} SCOP: a.177.1.1
Length = 339
Score = 23.3 bits (50), Expect = 7.9
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 22 KAIEEGVNHMWTVSAFQMHPCTI----MICDEDATQELRVKTV 60
K IE+G+N + + +P I + +E R+ +
Sbjct: 12 KRIEDGINQV--QCSVAEYPEAITYLLEQYNRVEAEEARLSDL 52
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, structu genomics; 2.20A
{Mycobacterium marinum}
Length = 256
Score = 23.3 bits (51), Expect = 8.2
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 9 ILITGSHKAFA 19
+L+TGS + F+
Sbjct: 54 VLLTGSGRGFS 64
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 22.9 bits (50), Expect = 8.7
Identities = 3/11 (27%), Positives = 6/11 (54%)
Query: 9 ILITGSHKAFA 19
++I G F+
Sbjct: 62 VVIHGIGDHFS 72
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 22.9 bits (50), Expect = 8.9
Identities = 4/11 (36%), Positives = 9/11 (81%)
Query: 9 ILITGSHKAFA 19
+++TG+ +AF
Sbjct: 59 LVVTGTGRAFC 69
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 22.9 bits (50), Expect = 9.4
Identities = 2/11 (18%), Positives = 5/11 (45%)
Query: 9 ILITGSHKAFA 19
+L++ F
Sbjct: 53 VLLSAVGSVFC 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.134 0.406
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 991,924
Number of extensions: 43944
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 52
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.4 bits)