Query psy2123
Match_columns 143
No_of_seqs 161 out of 1457
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 16:39:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r5y_A Homeotic protein sex co 99.9 1.2E-22 4.2E-27 131.1 7.7 80 2-86 8-87 (88)
2 2dmt_A Homeobox protein BARH-l 99.9 4.6E-22 1.6E-26 126.3 8.8 65 23-87 13-77 (80)
3 2dms_A Homeobox protein OTX2; 99.9 8.8E-22 3E-26 124.9 10.0 65 24-88 4-68 (80)
4 1b72_A Protein (homeobox prote 99.9 4E-22 1.4E-26 130.9 8.5 86 2-88 10-95 (97)
5 1nk2_P Homeobox protein VND; h 99.9 1.7E-21 5.8E-26 122.8 10.2 68 22-89 4-71 (77)
6 2dmq_A LIM/homeobox protein LH 99.9 2E-21 6.8E-26 123.2 10.6 64 25-88 5-68 (80)
7 2cue_A Paired box protein PAX6 99.9 1.3E-21 4.3E-26 124.2 9.5 67 25-91 5-71 (80)
8 2da3_A Alpha-fetoprotein enhan 99.9 5.7E-22 1.9E-26 125.7 7.9 66 22-87 12-77 (80)
9 2kt0_A Nanog, homeobox protein 99.9 9E-22 3.1E-26 125.9 7.9 67 21-87 16-82 (84)
10 2dmu_A Homeobox protein goosec 99.9 1.9E-21 6.4E-26 120.4 8.8 63 25-87 5-67 (70)
11 2da2_A Alpha-fetoprotein enhan 99.9 1.3E-21 4.4E-26 121.1 7.8 64 24-87 4-67 (70)
12 2cra_A Homeobox protein HOX-B1 99.9 1.1E-21 3.7E-26 121.5 7.2 63 25-87 5-67 (70)
13 1puf_A HOX-1.7, homeobox prote 99.9 4.2E-21 1.4E-25 121.0 9.8 65 24-88 10-74 (77)
14 2da1_A Alpha-fetoprotein enhan 99.9 1.3E-21 4.3E-26 121.1 7.0 64 24-87 4-67 (70)
15 2e1o_A Homeobox protein PRH; D 99.8 4.2E-21 1.4E-25 118.8 8.9 63 25-87 5-67 (70)
16 2h1k_A IPF-1, pancreatic and d 99.8 3.6E-21 1.2E-25 116.8 8.0 60 27-86 3-62 (63)
17 2hdd_A Protein (engrailed home 99.8 3.1E-21 1.1E-25 116.3 7.5 58 27-84 3-60 (61)
18 1b8i_A Ultrabithorax, protein 99.8 2.8E-21 9.5E-26 122.9 7.6 61 26-86 19-79 (81)
19 1ig7_A Homeotic protein MSX-1; 99.8 6E-21 2.1E-25 113.9 8.3 57 28-84 1-57 (58)
20 1wh5_A ZF-HD homeobox family p 99.8 2.3E-21 8E-26 123.0 6.9 61 24-84 14-78 (80)
21 2djn_A Homeobox protein DLX-5; 99.8 1.9E-21 6.5E-26 120.4 6.3 63 24-86 4-66 (70)
22 1ftt_A TTF-1 HD, thyroid trans 99.8 6E-21 2E-25 117.5 8.4 63 27-89 2-64 (68)
23 1fjl_A Paired protein; DNA-bin 99.8 6.9E-21 2.4E-25 121.0 8.8 65 24-88 15-79 (81)
24 2vi6_A Homeobox protein nanog; 99.8 2.5E-21 8.4E-26 117.2 6.2 60 26-85 2-61 (62)
25 1ahd_P Antennapedia protein mu 99.8 4.2E-21 1.4E-25 118.2 7.3 62 27-88 2-63 (68)
26 2m0c_A Homeobox protein arista 99.8 6.2E-21 2.1E-25 119.4 8.1 66 24-89 6-71 (75)
27 1zq3_P PRD-4, homeotic bicoid 99.8 8.9E-21 3E-25 116.7 8.6 62 27-88 2-63 (68)
28 3a01_A Homeodomain-containing 99.8 1E-20 3.5E-25 123.2 9.4 66 23-88 13-78 (93)
29 1bw5_A ISL-1HD, insulin gene e 99.8 4.3E-21 1.5E-25 117.5 6.4 61 26-86 2-62 (66)
30 2l7z_A Homeobox protein HOX-A1 99.8 8.2E-21 2.8E-25 118.5 7.7 63 25-87 5-67 (73)
31 1wh7_A ZF-HD homeobox family p 99.8 3.2E-21 1.1E-25 122.3 5.9 61 23-84 13-78 (80)
32 1yz8_P Pituitary homeobox 2; D 99.8 3.6E-21 1.2E-25 118.5 5.8 64 26-89 2-65 (68)
33 1jgg_A Segmentation protein EV 99.8 1.2E-20 4.2E-25 113.3 7.9 58 28-85 2-59 (60)
34 2hi3_A Homeodomain-only protei 99.8 2.5E-20 8.4E-25 116.3 9.3 61 28-88 3-64 (73)
35 2xsd_C POU domain, class 3, tr 99.8 3.1E-21 1.1E-25 137.7 5.6 86 3-88 74-160 (164)
36 2cuf_A FLJ21616 protein; homeo 99.8 2.6E-20 8.9E-25 121.7 9.6 65 24-88 4-83 (95)
37 2da4_A Hypothetical protein DK 99.8 8.4E-21 2.9E-25 120.4 7.0 63 24-86 5-71 (80)
38 1uhs_A HOP, homeodomain only p 99.8 2.5E-20 8.5E-25 115.9 8.8 61 28-88 2-63 (72)
39 2k40_A Homeobox expressed in E 99.8 1.3E-20 4.4E-25 115.7 7.3 61 28-88 2-62 (67)
40 3a02_A Homeobox protein arista 99.8 1.5E-20 5.1E-25 113.0 6.9 58 30-87 2-59 (60)
41 2da6_A Hepatocyte nuclear fact 99.8 7.3E-20 2.5E-24 120.3 10.4 68 24-91 3-91 (102)
42 1akh_A Protein (mating-type pr 99.8 1.2E-20 4.2E-25 113.7 6.3 59 25-83 3-61 (61)
43 3rkq_A Homeobox protein NKX-2. 99.8 2.5E-20 8.6E-25 111.0 7.5 57 27-83 2-58 (58)
44 2ecc_A Homeobox and leucine zi 99.8 5.9E-20 2E-24 114.9 9.0 60 29-88 5-64 (76)
45 2da5_A Zinc fingers and homeob 99.8 4.9E-20 1.7E-24 115.5 8.6 60 29-88 9-68 (75)
46 1au7_A Protein PIT-1, GHF-1; c 99.8 1.4E-20 4.7E-25 132.0 6.2 81 4-85 65-145 (146)
47 3a03_A T-cell leukemia homeobo 99.8 5E-20 1.7E-24 109.2 7.5 54 32-85 2-55 (56)
48 2ecb_A Zinc fingers and homeob 99.8 1.1E-19 3.8E-24 117.2 9.5 56 33-88 17-72 (89)
49 1x2n_A Homeobox protein pknox1 99.8 9.7E-20 3.3E-24 113.5 8.8 63 25-87 5-70 (73)
50 2ly9_A Zinc fingers and homeob 99.8 7.7E-20 2.6E-24 114.2 8.0 61 27-87 6-66 (74)
51 2dn0_A Zinc fingers and homeob 99.8 6E-20 2E-24 115.4 7.0 61 27-87 8-68 (76)
52 3nar_A ZHX1, zinc fingers and 99.8 6.4E-20 2.2E-24 120.1 7.4 63 24-86 22-84 (96)
53 2dmn_A Homeobox protein TGIF2L 99.8 2.8E-19 9.5E-24 114.1 10.0 65 24-88 4-71 (83)
54 1b72_B Protein (PBX1); homeodo 99.8 5.5E-20 1.9E-24 118.3 6.5 62 28-89 2-66 (87)
55 3d1n_I POU domain, class 6, tr 99.8 3.9E-20 1.3E-24 130.4 6.3 82 3-84 65-150 (151)
56 1puf_B PRE-B-cell leukemia tra 99.8 1.9E-19 6.7E-24 112.1 8.2 61 28-88 2-65 (73)
57 1wi3_A DNA-binding protein SAT 99.8 2E-19 7E-24 109.0 7.9 59 24-82 4-63 (71)
58 2dmp_A Zinc fingers and homeob 99.8 5.1E-19 1.7E-23 114.3 10.3 58 32-89 18-75 (89)
59 1e3o_C Octamer-binding transcr 99.8 8.3E-20 2.8E-24 129.8 6.6 61 25-85 99-159 (160)
60 1du6_A PBX1, homeobox protein 99.8 9.8E-20 3.3E-24 110.7 5.0 58 27-84 3-63 (64)
61 1k61_A Mating-type protein alp 99.8 4.9E-19 1.7E-23 106.3 7.7 55 31-85 2-59 (60)
62 3l1p_A POU domain, class 5, tr 99.8 8.9E-20 3E-24 129.0 3.8 82 4-85 72-154 (155)
63 1le8_B Mating-type protein alp 99.8 8.6E-19 2.9E-23 111.8 7.7 59 29-87 4-65 (83)
64 1mnm_C Protein (MAT alpha-2 tr 99.8 1.3E-18 4.4E-23 111.9 8.1 58 26-83 26-86 (87)
65 2cqx_A LAG1 longevity assuranc 99.8 2.5E-19 8.5E-24 111.4 4.6 58 28-85 9-67 (72)
66 1lfb_A Liver transcription fac 99.8 3.8E-19 1.3E-23 116.9 5.1 65 24-88 6-91 (99)
67 3nau_A Zinc fingers and homeob 99.8 1.4E-18 4.8E-23 105.3 6.9 53 34-86 11-63 (66)
68 2l9r_A Homeobox protein NKX-3. 99.8 9.7E-19 3.3E-23 107.8 6.0 57 31-87 8-64 (69)
69 2d5v_A Hepatocyte nuclear fact 99.7 1.1E-18 3.9E-23 124.3 5.5 65 23-87 93-157 (164)
70 2e19_A Transcription factor 8; 99.7 2.3E-18 7.9E-23 104.7 5.5 54 31-84 7-60 (64)
71 1x2m_A LAG1 longevity assuranc 99.7 1.3E-18 4.5E-23 105.4 4.1 50 36-85 9-59 (64)
72 1ic8_A Hepatocyte nuclear fact 99.7 1.4E-18 4.9E-23 126.6 3.0 62 23-84 111-193 (194)
73 3k2a_A Homeobox protein MEIS2; 99.7 8.8E-17 3E-21 98.5 6.9 55 33-87 4-61 (67)
74 2da7_A Zinc finger homeobox pr 99.6 1.4E-15 5E-20 92.6 6.3 46 36-81 14-59 (71)
75 2h8r_A Hepatocyte nuclear fact 99.6 8.8E-16 3E-20 113.3 6.3 62 21-82 136-218 (221)
76 2lk2_A Homeobox protein TGIF1; 99.6 1.2E-14 4.3E-19 93.1 9.6 58 31-88 9-69 (89)
77 1mh3_A Maltose binding-A1 home 99.4 1.4E-13 4.9E-18 109.1 4.4 55 29-83 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.8 3.3E-10 1.1E-14 60.8 -1.2 21 69-89 1-21 (37)
79 2ys9_A Homeobox and leucine zi 96.8 0.002 6.8E-08 38.8 4.6 40 38-77 17-56 (70)
80 2glo_A Brinker CG9653-PA; prot 89.0 1.4 4.6E-05 24.8 5.5 47 31-78 3-49 (59)
81 1hlv_A CENP-B, major centromer 88.5 2.1 7.2E-05 27.7 6.9 49 30-81 4-52 (131)
82 3hug_A RNA polymerase sigma fa 88.1 1.9 6.5E-05 26.3 6.2 49 34-87 38-86 (92)
83 2elh_A CG11849-PA, LD40883P; s 87.7 3.2 0.00011 25.1 8.5 46 27-77 16-61 (87)
84 2o8x_A Probable RNA polymerase 83.3 3.1 0.00011 23.5 5.1 48 33-85 15-62 (70)
85 1p4w_A RCSB; solution structur 81.7 5.7 0.00019 24.9 6.3 47 31-83 32-78 (99)
86 3c57_A Two component transcrip 80.9 3.9 0.00013 25.2 5.2 47 33-85 27-73 (95)
87 1tc3_C Protein (TC3 transposas 79.3 4.7 0.00016 20.6 5.1 40 33-77 5-44 (51)
88 1s7o_A Hypothetical UPF0122 pr 78.9 7 0.00024 25.1 6.1 48 33-85 22-69 (113)
89 1ku3_A Sigma factor SIGA; heli 78.3 6.5 0.00022 22.6 5.4 50 33-83 10-59 (73)
90 1jko_C HIN recombinase, DNA-in 77.5 1.5 5.2E-05 23.0 2.2 41 34-79 6-46 (52)
91 1je8_A Nitrate/nitrite respons 77.4 4 0.00014 24.4 4.3 47 32-84 20-66 (82)
92 3mzy_A RNA polymerase sigma-H 76.8 6.5 0.00022 25.6 5.7 49 34-88 110-158 (164)
93 1fse_A GERE; helix-turn-helix 76.7 5.3 0.00018 22.7 4.6 47 32-84 10-56 (74)
94 1xsv_A Hypothetical UPF0122 pr 75.2 9.2 0.00032 24.4 5.9 48 34-86 26-73 (113)
95 2jn6_A Protein CGL2762, transp 74.8 8.2 0.00028 23.5 5.4 41 32-76 4-45 (97)
96 1tty_A Sigma-A, RNA polymerase 74.4 7 0.00024 23.5 4.9 51 33-84 18-68 (87)
97 2p7v_B Sigma-70, RNA polymeras 73.0 4.6 0.00016 23.0 3.7 51 33-84 5-55 (68)
98 1rp3_A RNA polymerase sigma fa 71.6 9.7 0.00033 26.5 5.8 48 34-86 188-235 (239)
99 1or7_A Sigma-24, RNA polymeras 71.4 9.5 0.00032 25.8 5.6 30 57-86 159-188 (194)
100 1iuf_A Centromere ABP1 protein 71.4 7.3 0.00025 25.9 4.9 51 28-78 6-60 (144)
101 2rnj_A Response regulator prot 71.0 8.6 0.0003 23.2 4.8 47 32-84 28-74 (91)
102 1x3u_A Transcriptional regulat 69.1 7.8 0.00027 22.4 4.1 45 34-84 17-61 (79)
103 2k27_A Paired box protein PAX- 68.9 22 0.00076 23.5 7.0 46 32-77 82-134 (159)
104 3ulq_B Transcriptional regulat 68.1 18 0.0006 22.0 5.9 46 30-81 26-71 (90)
105 2lfw_A PHYR sigma-like domain; 67.5 7.4 0.00025 25.9 4.2 48 33-85 93-140 (157)
106 2jpc_A SSRB; DNA binding prote 65.3 7.6 0.00026 21.3 3.4 27 58-84 17-43 (61)
107 2hin_A GP39, repressor protein 62.9 5.9 0.0002 23.4 2.6 22 57-78 13-34 (71)
108 2rn7_A IS629 ORFA; helix, all 62.6 22 0.00076 21.9 5.6 45 32-76 5-52 (108)
109 1fi6_A EH domain protein REPS1 62.3 14 0.00049 22.1 4.5 44 33-76 2-50 (92)
110 2q24_A Putative TETR family tr 61.7 5.6 0.00019 26.7 2.8 41 38-80 20-60 (194)
111 2x48_A CAG38821; archeal virus 61.6 13 0.00045 19.8 3.9 36 36-76 18-53 (55)
112 3lph_A Protein REV; helix-loop 61.4 5.4 0.00019 23.7 2.2 36 39-88 18-53 (72)
113 1c07_A Protein (epidermal grow 61.2 14 0.00048 22.3 4.4 44 33-76 3-51 (95)
114 2pmy_A RAS and EF-hand domain- 60.4 9.6 0.00033 22.6 3.4 45 32-76 19-68 (91)
115 3bd1_A CRO protein; transcript 59.7 6.4 0.00022 22.9 2.4 23 57-79 14-36 (79)
116 2lv7_A Calcium-binding protein 58.2 20 0.00069 22.0 4.7 46 31-76 27-79 (100)
117 2rgt_A Fusion of LIM/homeobox 57.6 0.081 2.8E-06 36.7 -7.4 30 25-54 134-163 (169)
118 2q0o_A Probable transcriptiona 56.6 28 0.00096 24.6 5.9 46 32-83 174-219 (236)
119 2xi8_A Putative transcription 55.6 7 0.00024 21.4 2.0 23 57-79 17-39 (66)
120 2r1j_L Repressor protein C2; p 54.0 7.8 0.00027 21.3 2.1 23 57-79 21-43 (68)
121 3i5g_B Myosin regulatory light 53.1 33 0.0011 22.5 5.4 39 31-69 7-50 (153)
122 3clo_A Transcriptional regulat 53.0 23 0.0008 25.5 5.0 48 32-85 196-243 (258)
123 3t72_q RNA polymerase sigma fa 52.5 38 0.0013 21.0 5.3 52 34-86 20-71 (99)
124 1zug_A Phage 434 CRO protein; 52.2 8.3 0.00028 21.4 2.0 24 57-80 19-42 (71)
125 2qwt_A Transcriptional regulat 51.7 12 0.00041 25.2 3.1 40 39-80 19-58 (196)
126 2x7l_M HIV REV; nuclear export 51.3 3.9 0.00013 26.6 0.5 37 39-89 15-51 (115)
127 3bs3_A Putative DNA-binding pr 51.3 9.2 0.00031 21.6 2.1 23 57-79 26-48 (76)
128 3omt_A Uncharacterized protein 51.2 9.7 0.00033 21.6 2.2 23 57-79 24-46 (73)
129 2q1z_A RPOE, ECF SIGE; ECF sig 50.8 16 0.00054 24.4 3.6 27 59-85 156-182 (184)
130 1w8x_P Protein P16, protein S, 50.2 5.2 0.00018 24.8 0.9 12 70-81 18-29 (117)
131 1l3l_A Transcriptional activat 49.8 40 0.0014 23.8 5.8 47 31-83 171-217 (234)
132 1u78_A TC3 transposase, transp 49.2 38 0.0013 21.4 5.2 41 32-77 5-45 (141)
133 3kz3_A Repressor protein CI; f 49.2 10 0.00036 21.9 2.2 24 57-80 28-51 (80)
134 1u78_A TC3 transposase, transp 49.2 47 0.0016 20.9 6.3 44 33-80 60-105 (141)
135 1adr_A P22 C2 repressor; trans 49.0 10 0.00035 21.4 2.1 24 57-80 21-44 (76)
136 1r69_A Repressor protein CI; g 48.4 11 0.00036 20.8 2.0 24 57-80 17-40 (69)
137 1rzs_A Antirepressor, regulato 48.4 9.5 0.00032 21.4 1.8 19 57-75 13-31 (61)
138 2b5a_A C.BCLI; helix-turn-heli 47.1 11 0.00039 21.3 2.1 23 57-79 26-48 (77)
139 2wiu_B HTH-type transcriptiona 45.8 17 0.00058 21.2 2.8 24 57-80 28-51 (88)
140 3fmy_A HTH-type transcriptiona 45.6 26 0.00087 20.0 3.5 41 32-79 9-49 (73)
141 1j9i_A GPNU1 DBD;, terminase s 45.5 16 0.00053 20.8 2.5 21 57-77 5-25 (68)
142 2a6c_A Helix-turn-helix motif; 45.3 14 0.00049 21.6 2.3 23 57-79 34-56 (83)
143 2kpj_A SOS-response transcript 44.3 13 0.00044 22.3 2.1 23 57-79 25-47 (94)
144 3b7h_A Prophage LP1 protein 11 44.1 13 0.00046 21.0 2.1 23 57-79 23-45 (78)
145 1y7y_A C.AHDI; helix-turn-heli 44.1 14 0.00047 20.7 2.1 23 57-79 29-51 (74)
146 2ict_A Antitoxin HIGA; helix-t 41.6 17 0.00057 21.7 2.3 23 57-79 24-46 (94)
147 3c3w_A Two component transcrip 41.2 35 0.0012 23.6 4.3 46 32-83 148-193 (225)
148 2rek_A Putative TETR-family tr 41.0 11 0.00039 25.2 1.6 40 39-80 22-61 (199)
149 3o9x_A Uncharacterized HTH-typ 40.7 31 0.0011 22.0 3.7 23 57-79 87-109 (133)
150 3qp6_A CVIR transcriptional re 40.3 1E+02 0.0035 22.3 7.2 46 32-83 196-241 (265)
151 2ef8_A C.ECOT38IS, putative tr 39.0 18 0.00062 20.7 2.1 23 57-79 26-48 (84)
152 2k9q_A Uncharacterized protein 38.9 17 0.00057 20.8 1.9 23 57-79 18-40 (77)
153 2opo_A Polcalcin CHE A 3; calc 38.6 46 0.0016 18.8 4.0 44 33-76 4-53 (86)
154 2hku_A A putative transcriptio 38.6 16 0.00055 24.8 2.1 40 39-80 26-65 (215)
155 3f6w_A XRE-family like protein 38.5 18 0.00062 20.8 2.1 23 57-79 30-52 (83)
156 3szt_A QCSR, quorum-sensing co 37.9 83 0.0029 22.2 5.9 45 32-82 174-218 (237)
157 2hxi_A Putative transcriptiona 37.5 30 0.001 24.5 3.5 49 32-81 27-76 (241)
158 2g7g_A RHA04620, putative tran 37.3 18 0.00063 25.0 2.2 43 39-84 17-59 (213)
159 1a04_A Nitrate/nitrite respons 37.2 61 0.0021 21.9 5.0 46 32-83 153-198 (215)
160 1pdn_C Protein (PRD paired); p 37.1 67 0.0023 19.6 4.8 45 33-77 75-126 (128)
161 2pij_A Prophage PFL 6 CRO; tra 37.0 24 0.00082 19.4 2.4 21 57-77 16-36 (67)
162 3jsj_A Putative TETR-family tr 36.9 23 0.00077 23.4 2.6 42 38-81 14-55 (190)
163 2lhi_A Calmodulin, serine/thre 36.7 26 0.0009 23.5 2.9 38 31-68 2-44 (176)
164 1t33_A Putative transcriptiona 36.5 18 0.00062 24.5 2.1 41 39-81 18-58 (224)
165 2fq4_A Transcriptional regulat 36.1 27 0.00094 23.2 2.9 44 39-83 18-61 (192)
166 3t76_A VANU, transcriptional r 36.1 21 0.00071 21.6 2.1 23 57-79 40-62 (88)
167 2jml_A DNA binding domain/tran 35.7 23 0.00078 20.9 2.2 20 57-76 8-27 (81)
168 1lmb_3 Protein (lambda repress 35.7 21 0.00072 21.0 2.1 23 57-79 33-55 (92)
169 2i10_A Putative TETR transcrip 35.3 43 0.0015 22.5 3.9 44 37-81 15-58 (202)
170 3qq6_A HTH-type transcriptiona 34.6 23 0.00079 20.4 2.1 21 57-77 26-46 (78)
171 1x57_A Endothelial differentia 34.5 24 0.00083 20.8 2.2 23 57-79 29-51 (91)
172 3s8q_A R-M controller protein; 34.2 24 0.00081 20.3 2.1 23 57-79 27-49 (82)
173 1j7q_A CAVP, calcium vector pr 34.1 65 0.0022 18.2 5.2 45 32-76 6-60 (86)
174 2cw1_A SN4M; lambda CRO fold, 33.8 28 0.00094 20.0 2.2 22 56-77 15-36 (65)
175 2v57_A TETR family transcripti 32.8 23 0.00079 23.2 2.1 37 41-80 22-58 (190)
176 1y66_A Engrailed homeodomain; 32.7 11 0.00039 20.0 0.4 41 37-77 7-47 (52)
177 3dcf_A Transcriptional regulat 32.6 23 0.0008 23.7 2.1 41 39-80 37-77 (218)
178 2kgr_A Intersectin-1; structur 32.5 70 0.0024 19.7 4.3 45 32-76 6-55 (111)
179 2l49_A C protein; P2 bacteriop 32.4 24 0.00081 21.1 1.9 24 57-80 20-43 (99)
180 3kz9_A SMCR; transcriptional r 32.1 48 0.0016 21.7 3.6 41 39-80 23-63 (206)
181 2ewt_A BLDD, putative DNA-bind 31.9 31 0.0011 18.9 2.3 23 57-79 24-48 (71)
182 2qko_A Possible transcriptiona 30.8 25 0.00085 23.8 2.0 45 39-84 34-78 (215)
183 2ktg_A Calmodulin, putative; e 30.8 74 0.0025 17.8 4.7 45 32-76 6-57 (85)
184 1irz_A ARR10-B; helix-turn-hel 30.8 80 0.0027 18.2 6.2 58 27-84 3-62 (64)
185 2k27_A Paired box protein PAX- 30.7 1.1E+02 0.0038 19.9 6.7 40 33-77 25-64 (159)
186 2ppx_A AGR_C_3184P, uncharacte 30.6 29 0.00099 20.9 2.1 23 57-79 46-68 (99)
187 1eh2_A EPS15; calcium binding, 30.5 97 0.0033 19.1 5.7 44 32-75 7-54 (106)
188 3g1o_A Transcriptional regulat 30.4 37 0.0013 23.7 2.9 42 39-81 49-90 (255)
189 2joj_A Centrin protein; N-term 30.3 66 0.0023 17.5 3.6 43 34-76 1-50 (77)
190 3op9_A PLI0006 protein; struct 30.1 31 0.0011 21.3 2.2 23 57-79 25-47 (114)
191 3fia_A Intersectin-1; EH 1 dom 29.8 1E+02 0.0035 19.9 4.8 46 30-75 23-73 (121)
192 1k78_A Paired box protein PAX5 29.8 1.1E+02 0.0038 19.5 7.5 48 31-78 88-142 (149)
193 2ofy_A Putative XRE-family tra 29.7 31 0.0011 20.0 2.1 23 57-79 30-52 (86)
194 3lsg_A Two-component response 29.1 61 0.0021 19.5 3.5 23 56-78 21-43 (103)
195 1avs_A Troponin C; muscle cont 29.1 84 0.0029 17.9 4.7 44 33-76 13-63 (90)
196 2rae_A Transcriptional regulat 28.8 34 0.0012 22.7 2.5 40 39-79 23-62 (207)
197 2g7l_A TETR-family transcripti 28.6 30 0.001 24.6 2.2 54 31-85 16-70 (243)
198 1dtl_A Cardiac troponin C; hel 28.5 1.1E+02 0.0038 19.1 5.7 45 32-76 10-62 (161)
199 3fiw_A Putative TETR-family tr 28.4 30 0.001 23.9 2.1 53 30-83 21-74 (211)
200 1uxc_A FRUR (1-57), fructose r 28.3 41 0.0014 19.1 2.4 23 57-79 3-25 (65)
201 3qrx_A Centrin; calcium-bindin 27.9 1.2E+02 0.004 19.2 5.1 47 29-75 17-70 (169)
202 3g7r_A Putative transcriptiona 27.9 35 0.0012 23.2 2.4 41 39-80 41-81 (221)
203 2qtq_A Transcriptional regulat 26.9 60 0.0021 21.4 3.4 41 39-80 22-62 (213)
204 1neq_A DNA-binding protein NER 26.9 36 0.0012 19.8 2.0 21 57-77 25-45 (74)
205 1qgp_A Protein (double strande 26.9 45 0.0015 19.5 2.4 37 39-76 17-53 (77)
206 3q0w_A HTH-type transcriptiona 26.8 30 0.001 23.9 1.9 41 40-81 51-91 (236)
207 3eus_A DNA-binding protein; st 26.7 40 0.0014 19.7 2.2 23 57-79 30-52 (86)
208 3mlf_A Transcriptional regulat 26.4 39 0.0013 21.0 2.2 23 57-79 39-61 (111)
209 2hxo_A Putative TETR-family tr 26.4 46 0.0016 23.4 2.9 51 31-82 13-64 (237)
210 3rd3_A Probable transcriptiona 26.4 22 0.00077 23.3 1.1 41 39-80 16-56 (197)
211 3i9v_2 NADH-quinone oxidoreduc 26.3 98 0.0034 21.4 4.4 36 37-72 26-61 (181)
212 3i5g_C Myosin catalytic light 26.2 62 0.0021 21.2 3.3 36 33-68 2-44 (159)
213 3g5g_A Regulatory protein; tra 26.0 39 0.0013 20.6 2.1 23 57-79 44-66 (99)
214 2cqq_A RSGI RUH-037, DNAJ homo 25.9 1E+02 0.0035 17.9 6.6 45 31-75 8-52 (72)
215 1l0o_C Sigma factor; bergerat 25.9 14 0.00049 25.6 0.0 43 34-81 199-241 (243)
216 2dg8_A Putative TETR-family tr 25.6 27 0.00092 23.2 1.4 41 39-80 15-55 (193)
217 2zcm_A Biofilm operon icaabcd 25.6 44 0.0015 21.9 2.5 43 38-81 12-54 (192)
218 3vpr_A Transcriptional regulat 25.6 58 0.002 21.3 3.1 43 39-82 9-51 (190)
219 4aci_A HTH-type transcriptiona 25.4 44 0.0015 21.8 2.5 40 40-80 21-60 (191)
220 2v79_A DNA replication protein 25.4 1.4E+02 0.0049 19.4 5.6 45 34-81 30-78 (135)
221 3bdn_A Lambda repressor; repre 25.2 41 0.0014 23.6 2.4 23 57-79 33-55 (236)
222 3pas_A TETR family transcripti 25.1 37 0.0013 22.1 2.0 25 56-80 30-54 (195)
223 3cec_A Putative antidote prote 25.1 40 0.0014 20.4 2.1 23 57-79 34-56 (104)
224 1iq3_A Ralbp1-interacting prot 25.1 27 0.00091 21.9 1.2 46 31-76 13-63 (110)
225 3vp5_A Transcriptional regulat 25.0 60 0.0021 21.5 3.1 41 39-80 18-58 (189)
226 3dew_A Transcriptional regulat 24.9 40 0.0014 22.1 2.2 42 39-81 14-55 (206)
227 3ivp_A Putative transposon-rel 24.9 41 0.0014 21.1 2.1 23 57-79 28-50 (126)
228 2qib_A TETR-family transcripti 24.8 38 0.0013 23.3 2.1 42 39-81 19-60 (231)
229 3vk0_A NHTF, transcriptional r 24.7 37 0.0013 21.1 1.8 23 57-79 37-59 (114)
230 2eby_A Putative HTH-type trans 24.3 42 0.0014 20.6 2.1 23 57-79 27-49 (113)
231 2zcx_A SCO7815, TETR-family tr 24.3 30 0.001 24.1 1.5 41 39-80 29-69 (231)
232 1b0n_A Protein (SINR protein); 24.3 43 0.0015 20.2 2.1 21 57-77 17-37 (111)
233 3ppb_A Putative TETR family tr 24.2 65 0.0022 20.8 3.2 41 39-80 15-55 (195)
234 1pb6_A Hypothetical transcript 24.2 45 0.0015 22.1 2.3 42 39-81 24-65 (212)
235 3loc_A HTH-type transcriptiona 24.1 40 0.0014 22.3 2.1 25 56-80 40-64 (212)
236 3lwj_A Putative TETR-family tr 24.0 44 0.0015 22.0 2.2 41 39-80 18-58 (202)
237 3lfp_A CSP231I C protein; tran 24.0 51 0.0018 19.6 2.4 23 57-79 17-43 (98)
238 3gzi_A Transcriptional regulat 24.0 72 0.0025 21.2 3.4 40 40-80 24-63 (218)
239 2jj7_A Hemolysin II regulatory 23.9 48 0.0017 21.5 2.4 29 56-84 29-57 (186)
240 2pjp_A Selenocysteine-specific 23.9 69 0.0024 20.2 3.1 42 35-77 2-43 (121)
241 2dg7_A Putative transcriptiona 23.8 46 0.0016 21.9 2.3 41 39-80 13-53 (195)
242 2kvr_A Ubiquitin carboxyl-term 23.8 9.8 0.00033 25.2 -1.2 23 57-79 72-94 (130)
243 1r8d_A Transcription activator 23.8 52 0.0018 20.4 2.4 20 57-76 5-24 (109)
244 3f52_A CLP gene regulator (CLG 23.7 46 0.0016 20.5 2.2 23 57-79 44-66 (117)
245 2jvl_A TRMBF1; coactivator, he 23.6 41 0.0014 20.8 1.9 23 57-79 52-74 (107)
246 2ovk_B RLC, myosin regulatory 23.4 1.4E+02 0.0048 18.5 5.1 46 31-76 7-59 (153)
247 3j04_B Myosin regulatory light 23.3 1.3E+02 0.0046 18.3 5.0 42 34-75 1-49 (143)
248 2mys_B Myosin; muscle protein, 23.3 1.5E+02 0.005 18.7 5.6 45 33-77 18-70 (166)
249 2xdn_A HTH-type transcriptiona 23.3 53 0.0018 21.9 2.6 42 39-81 17-58 (210)
250 2vz4_A Tipal, HTH-type transcr 23.2 55 0.0019 20.3 2.4 20 57-76 4-23 (108)
251 3bru_A Regulatory protein, TET 22.9 69 0.0023 21.4 3.1 41 39-80 36-76 (222)
252 3bqz_B HTH-type transcriptiona 22.9 51 0.0017 21.5 2.4 41 39-80 8-48 (194)
253 3u0k_A Rcamp; fluorescent prot 22.8 1E+02 0.0035 24.7 4.4 46 30-75 292-344 (440)
254 2kn2_A Calmodulin; S MAPK phos 22.8 1.1E+02 0.0039 17.3 4.5 42 35-76 4-52 (92)
255 1etf_B REV peptide; complex (R 22.7 51 0.0018 15.5 1.6 14 76-89 7-20 (26)
256 3bni_A Putative TETR-family tr 22.5 59 0.002 22.2 2.7 40 40-80 50-89 (229)
257 1yio_A Response regulatory pro 22.5 97 0.0033 20.6 3.9 44 34-83 143-186 (208)
258 2np5_A Transcriptional regulat 22.3 46 0.0016 22.3 2.1 42 39-81 15-56 (203)
259 3f0c_A TETR-molecule A, transc 22.3 49 0.0017 22.0 2.2 41 39-80 17-57 (216)
260 2ao9_A Phage protein; structur 22.3 83 0.0028 21.4 3.3 45 33-77 23-71 (155)
261 3trb_A Virulence-associated pr 22.1 50 0.0017 20.4 2.1 36 41-79 17-52 (104)
262 2hyt_A TETR-family transcripti 22.1 70 0.0024 21.1 3.0 41 39-80 18-58 (197)
263 2d6y_A Putative TETR family re 22.0 56 0.0019 21.9 2.5 42 39-81 14-55 (202)
264 3vib_A MTRR; helix-turn-helix 21.9 61 0.0021 21.6 2.7 42 39-81 16-57 (210)
265 2o7t_A Transcriptional regulat 21.9 47 0.0016 22.0 2.1 41 39-80 14-54 (199)
266 2yve_A Transcriptional regulat 21.7 49 0.0017 21.8 2.1 42 39-81 10-51 (185)
267 2fjr_A Repressor protein CI; g 21.7 52 0.0018 22.1 2.3 25 56-80 22-46 (189)
268 1l9z_H Sigma factor SIGA; heli 21.7 1.7E+02 0.0056 23.3 5.4 49 34-83 376-424 (438)
269 2wui_A MEXZ, transcriptional r 21.6 74 0.0025 21.3 3.1 45 39-84 17-61 (210)
270 3fwb_A Cell division control p 21.4 1.6E+02 0.0053 18.3 5.9 46 30-75 13-65 (161)
271 3on4_A Transcriptional regulat 21.4 50 0.0017 21.4 2.1 41 39-80 16-56 (191)
272 2gfn_A HTH-type transcriptiona 21.3 52 0.0018 22.2 2.2 40 40-80 16-55 (209)
273 3he0_A Transcriptional regulat 21.1 57 0.0019 21.2 2.3 44 37-81 15-58 (196)
274 3qkx_A Uncharacterized HTH-typ 21.0 82 0.0028 20.2 3.1 41 39-80 14-54 (188)
275 2cqr_A RSGI RUH-043, DNAJ homo 21.0 1.3E+02 0.0046 17.5 7.5 48 29-76 16-64 (73)
276 3egq_A TETR family transcripti 21.0 51 0.0017 21.1 2.0 41 40-81 11-51 (170)
277 3c2b_A Transcriptional regulat 20.8 61 0.0021 21.7 2.5 45 39-84 21-65 (221)
278 2a6h_F RNA polymerase sigma fa 20.7 1.6E+02 0.0054 23.1 5.1 49 34-83 361-409 (423)
279 2g3b_A Putative TETR-family tr 20.7 59 0.002 21.9 2.4 26 56-81 25-50 (208)
280 3ccy_A Putative TETR-family tr 20.4 53 0.0018 21.8 2.1 41 39-80 20-60 (203)
281 2w53_A Repressor, SMet; antibi 20.3 52 0.0018 22.1 2.1 42 38-80 16-57 (219)
282 2iai_A Putative transcriptiona 20.3 64 0.0022 22.0 2.5 42 38-80 35-76 (230)
283 1vi0_A Transcriptional regulat 20.2 52 0.0018 22.1 2.0 41 39-80 14-54 (206)
284 2nx4_A Transcriptional regulat 20.2 54 0.0018 21.7 2.1 39 41-80 18-56 (194)
285 2g7s_A Transcriptional regulat 20.2 55 0.0019 21.2 2.1 41 39-80 14-54 (194)
286 2oer_A Probable transcriptiona 20.1 54 0.0018 22.1 2.1 42 38-80 26-70 (214)
287 2l8n_A Transcriptional repress 20.1 57 0.0019 18.6 1.9 22 57-78 12-33 (67)
No 1
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.88 E-value=1.2e-22 Score=131.09 Aligned_cols=80 Identities=30% Similarity=0.546 Sum_probs=61.9
Q ss_pred CcccccccccCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 2 EYDWMLTLRCDGEDDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 2 ~~~w~~~~~~~~~~~~~~~~~~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
-|+||.....+.+.. ....+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 8 ~~pwm~~~~~~~~~~-----~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k 82 (88)
T 2r5y_A 8 IYPWMKRVHLGTSTV-----NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMK 82 (88)
T ss_dssp CCGGGSCC--------------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCchhhccCCCCCCC-----CCCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHH
Confidence 489998765433222 123346788999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q psy2123 82 FRRNE 86 (143)
Q Consensus 82 ~rk~~ 86 (143)
+|+..
T Consensus 83 ~kk~~ 87 (88)
T 2r5y_A 83 WKKEH 87 (88)
T ss_dssp HHTTC
T ss_pred hHhhc
Confidence 99864
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=4.6e-22 Score=126.26 Aligned_cols=65 Identities=40% Similarity=0.643 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 23 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 23 ~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
..++.++.|+.|+..|+.+|+..|..++||+..+++.||..|||++.+|++||||||+|+||..+
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 45567889999999999999999999999999999999999999999999999999999998654
No 3
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=8.8e-22 Score=124.92 Aligned_cols=65 Identities=54% Similarity=0.904 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
..+.++.|+.|+..|+.+|+..|..++||+..+++.||..+||++.+|++||||||+|+|+..+.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 34578899999999999999999999999999999999999999999999999999999997654
No 4
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=4e-22 Score=130.89 Aligned_cols=86 Identities=36% Similarity=0.562 Sum_probs=62.9
Q ss_pred CcccccccccCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 2 EYDWMLTLRCDGEDDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 2 ~~~w~~~~~~~~~~~~~~~~~~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
.|+||...+........ ......+.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|
T Consensus 10 ~~~W~~~~r~~~~~~~~-~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 88 (97)
T 1b72_A 10 TFDWMKVKRNPPKTAKV-SEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMK 88 (97)
T ss_dssp CCGGGGC---------------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCCCCC-CCCCCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHH
Confidence 58999976632221111 11222456788999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q psy2123 82 FRRNERN 88 (143)
Q Consensus 82 ~rk~~~~ 88 (143)
+|+..+.
T Consensus 89 ~kk~~~~ 95 (97)
T 1b72_A 89 QKKRERE 95 (97)
T ss_dssp HHHHHTC
T ss_pred HhHHhcc
Confidence 9997654
No 5
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.86 E-value=1.7e-21 Score=122.76 Aligned_cols=68 Identities=34% Similarity=0.510 Sum_probs=62.3
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhhh
Q psy2123 22 RRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERNF 89 (143)
Q Consensus 22 ~~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~~ 89 (143)
+...+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.....
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 34556788899999999999999999999999999999999999999999999999999999876543
No 6
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=123.23 Aligned_cols=64 Identities=45% Similarity=0.677 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 25 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 25 ~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
.+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999997654
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=1.3e-21 Score=124.21 Aligned_cols=67 Identities=60% Similarity=0.936 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhhhcc
Q psy2123 25 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERNFIS 91 (143)
Q Consensus 25 ~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~~~~ 91 (143)
.+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~ 71 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQ 71 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhc
Confidence 4567889999999999999999999999999999999999999999999999999999998876543
No 8
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=5.7e-22 Score=125.69 Aligned_cols=66 Identities=32% Similarity=0.464 Sum_probs=61.0
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 22 RRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 22 ~~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
....+.+|.|+.|+.+|+.+|+..|..++||+..++++||..|||++.+|++||||||+|+||...
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 12 EEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 345567889999999999999999999999999999999999999999999999999999998643
No 9
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=9e-22 Score=125.92 Aligned_cols=67 Identities=34% Similarity=0.534 Sum_probs=61.7
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 21 ERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 21 ~~~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
.....+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+
T Consensus 16 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 16 DKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3445667889999999999999999999999999999999999999999999999999999998654
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=120.41 Aligned_cols=63 Identities=54% Similarity=0.892 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 25 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 25 ~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
.+.++.|+.|+..|+.+|+..|..++||+..+++.||..+||++.+|++||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 346788999999999999999999999999999999999999999999999999999998654
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=121.10 Aligned_cols=64 Identities=33% Similarity=0.517 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
..+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 3456788999999999999999999999999999999999999999999999999999998654
No 12
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=1.1e-21 Score=121.52 Aligned_cols=63 Identities=27% Similarity=0.532 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 25 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 25 ~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
.+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 456788999999999999999999999999999999999999999999999999999998653
No 13
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.85 E-value=4.2e-21 Score=120.96 Aligned_cols=65 Identities=34% Similarity=0.549 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
.++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 34567889999999999999999999999999999999999999999999999999999998765
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=121.15 Aligned_cols=64 Identities=27% Similarity=0.400 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
..+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 3457789999999999999999999999999999999999999999999999999999998654
No 15
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=4.2e-21 Score=118.83 Aligned_cols=63 Identities=41% Similarity=0.610 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 25 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 25 ~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
.+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 346678999999999999999999999999999999999999999999999999999998654
No 16
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.85 E-value=3.6e-21 Score=116.82 Aligned_cols=60 Identities=40% Similarity=0.628 Sum_probs=56.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhh
Q psy2123 27 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86 (143)
Q Consensus 27 ~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~ 86 (143)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 567899999999999999999999999999999999999999999999999999999863
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.85 E-value=3.1e-21 Score=116.33 Aligned_cols=58 Identities=36% Similarity=0.725 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 27 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 27 ~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4678999999999999999999999999999999999999999999999999999987
No 18
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.85 E-value=2.8e-21 Score=122.92 Aligned_cols=61 Identities=38% Similarity=0.622 Sum_probs=54.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhh
Q psy2123 26 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86 (143)
Q Consensus 26 ~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~ 86 (143)
+.++.|+.|+..|+.+|+..|..++||+..+++.||..+||++.+|++||||||+|+||..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4578899999999999999999999999999999999999999999999999999999864
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.84 E-value=6e-21 Score=113.92 Aligned_cols=57 Identities=44% Similarity=0.751 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 478999999999999999999999999999999999999999999999999999987
No 20
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.84 E-value=2.3e-21 Score=122.98 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFER----THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~----~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
..+.+|.|+.|+.+|+.+|+..|+. ++||+..++++||..|||++.+|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4567889999999999999999999 999999999999999999999999999999999775
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-21 Score=120.41 Aligned_cols=63 Identities=37% Similarity=0.662 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhh
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~ 86 (143)
..+.++.|+.|+..|+.+|+..|..++||+..+++.||..+||++.+|++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 345678899999999999999999999999999999999999999999999999999998854
No 22
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.84 E-value=6e-21 Score=117.53 Aligned_cols=63 Identities=35% Similarity=0.624 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhhh
Q psy2123 27 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERNF 89 (143)
Q Consensus 27 ~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~~ 89 (143)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 467899999999999999999999999999999999999999999999999999999976543
No 23
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.84 E-value=6.9e-21 Score=121.04 Aligned_cols=65 Identities=58% Similarity=1.006 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
.++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+....
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhccc
Confidence 45678899999999999999999999999999999999999999999999999999999997653
No 24
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.84 E-value=2.5e-21 Score=117.17 Aligned_cols=60 Identities=35% Similarity=0.530 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 26 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 26 ~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 357889999999999999999999999999999999999999999999999999999885
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.84 E-value=4.2e-21 Score=118.23 Aligned_cols=62 Identities=34% Similarity=0.612 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 27 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 27 ~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 46789999999999999999999999999999999999999999999999999999997653
No 26
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.84 E-value=6.2e-21 Score=119.40 Aligned_cols=66 Identities=67% Similarity=0.989 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhhh
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERNF 89 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~~ 89 (143)
..++++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+.+
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~ 71 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFG 71 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhh
Confidence 345678899999999999999999999999999999999999999999999999999999976653
No 27
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.84 E-value=8.9e-21 Score=116.75 Aligned_cols=62 Identities=39% Similarity=0.660 Sum_probs=58.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 27 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 27 ~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999997654
No 28
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.84 E-value=1e-20 Score=123.23 Aligned_cols=66 Identities=38% Similarity=0.685 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 23 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 23 ~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 345677899999999999999999999999999999999999999999999999999999997654
No 29
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.84 E-value=4.3e-21 Score=117.48 Aligned_cols=61 Identities=36% Similarity=0.623 Sum_probs=57.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhh
Q psy2123 26 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86 (143)
Q Consensus 26 ~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~ 86 (143)
+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 3578899999999999999999999999999999999999999999999999999998864
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.84 E-value=8.2e-21 Score=118.47 Aligned_cols=63 Identities=29% Similarity=0.496 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 25 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 25 ~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
.+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 346788999999999999999999999999999999999999999999999999999998654
No 31
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.84 E-value=3.2e-21 Score=122.30 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 23 RKPKPRRNRTTFNSHQLNALEKVFER-----THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 23 ~~~~~rr~R~~~~~~q~~~L~~~f~~-----~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
...+++|.||.|+.+|+.+|+ .|.. ++||+..++++||..|||++.+|+|||||||+|+++
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345678899999999999999 7999 999999999999999999999999999999999775
No 32
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.83 E-value=3.6e-21 Score=118.50 Aligned_cols=64 Identities=53% Similarity=0.847 Sum_probs=60.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhhh
Q psy2123 26 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERNF 89 (143)
Q Consensus 26 ~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~~ 89 (143)
+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 3578899999999999999999999999999999999999999999999999999999987643
No 33
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=1.2e-20 Score=113.35 Aligned_cols=58 Identities=47% Similarity=0.690 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999874
No 34
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=2.5e-20 Score=116.27 Aligned_cols=61 Identities=28% Similarity=0.414 Sum_probs=57.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 28 RRNRTTFNSHQLNALEKVFER-THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~~-~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||||||+|+|+..+.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccC
Confidence 467899999999999999995 9999999999999999999999999999999999997653
No 35
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.83 E-value=3.1e-21 Score=137.69 Aligned_cols=86 Identities=28% Similarity=0.404 Sum_probs=58.9
Q ss_pred cccccccccC-CCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 3 YDWMLTLRCD-GEDDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 3 ~~w~~~~~~~-~~~~~~~~~~~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
+.||++.+.. +.....+......+++|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 74 ~~wl~eae~~~~~~~~~~~~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 153 (164)
T 2xsd_C 74 NKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQK 153 (164)
T ss_dssp HHHHHHHCC-----------------------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccCCCcccccccccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHH
Confidence 4588887732 222333333445667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q psy2123 82 FRRNERN 88 (143)
Q Consensus 82 ~rk~~~~ 88 (143)
+||..+.
T Consensus 154 ~kr~~~~ 160 (164)
T 2xsd_C 154 EKRMTPA 160 (164)
T ss_dssp HTBSCC-
T ss_pred HhhccCC
Confidence 9997643
No 36
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=2.6e-20 Score=121.75 Aligned_cols=65 Identities=31% Similarity=0.545 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcC---------------CChhHHHHHHhhHHHHHHHhhhh
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVC---------------LSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lg---------------l~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
..+.+|.|+.|+..|+.+|+.+|..++||+..+++.||..|| |++.+|++||||||+|+|+..+.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 356788999999999999999999999999999999999999 99999999999999999998764
No 37
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=8.4e-21 Score=120.36 Aligned_cols=63 Identities=24% Similarity=0.340 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhh
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFERT----HYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~~----~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~ 86 (143)
..+.++.|+.|+.+|+.+|+.+|..+ +||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 34577889999999999999999999 9999999999999999999999999999999999853
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=2.5e-20 Score=115.93 Aligned_cols=61 Identities=30% Similarity=0.462 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 28 RRNRTTFNSHQLNALEKVFER-THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~~-~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
.+.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||||||+|+|+..+.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccC
Confidence 367899999999999999996 9999999999999999999999999999999999997643
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=115.66 Aligned_cols=61 Identities=48% Similarity=0.821 Sum_probs=57.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 6789999999999999999999999999999999999999999999999999999986543
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.83 E-value=1.5e-20 Score=112.97 Aligned_cols=58 Identities=66% Similarity=1.070 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 30 NRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 30 ~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4789999999999999999999999999999999999999999999999999998654
No 41
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.3e-20 Score=120.25 Aligned_cols=68 Identities=25% Similarity=0.403 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHc---------------------CCChhHHHHHHhhHHHHH
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKV---------------------CLSEARVQVWFQNRRAKF 82 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~l---------------------gl~~~~V~~WFqNrR~k~ 82 (143)
.++.||.|+.|++.|+.+|+..|..++||+..++++||..| +|++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678899999999999999999999999999999999999 799999999999999999
Q ss_pred HHhhhhhcc
Q psy2123 83 RRNERNFIS 91 (143)
Q Consensus 83 rk~~~~~~~ 91 (143)
++..+....
T Consensus 83 kr~~~~~~~ 91 (102)
T 2da6_A 83 AFRQKLAMD 91 (102)
T ss_dssp HHHHHHHHS
T ss_pred HHhhHhhhc
Confidence 998776543
No 42
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.82 E-value=1.2e-20 Score=113.65 Aligned_cols=59 Identities=29% Similarity=0.522 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 25 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 25 ~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
.+.++.|+.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||+|||+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999865
No 43
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=111.04 Aligned_cols=57 Identities=37% Similarity=0.628 Sum_probs=54.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 27 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 27 ~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999975
No 44
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=5.9e-20 Score=114.86 Aligned_cols=60 Identities=15% Similarity=0.276 Sum_probs=55.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 29 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 29 r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
..|..|+.+|+.+|+..|..++||+..++++||..+||++.+|++||||||+|+|+....
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 346679999999999999999999999999999999999999999999999999986543
No 45
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.9e-20 Score=115.49 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=56.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 29 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 29 r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
++|..|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 456679999999999999999999999999999999999999999999999999997654
No 46
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.82 E-value=1.4e-20 Score=131.99 Aligned_cols=81 Identities=26% Similarity=0.386 Sum_probs=61.6
Q ss_pred ccccccccCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 4 DWMLTLRCDGEDDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 4 ~w~~~~~~~~~~~~~~~~~~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
.|+++.+..+... .+..+...+++|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|
T Consensus 65 ~wl~e~e~~~~~~-~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~k 143 (146)
T 1au7_A 65 KWLEEAEQVGALY-NEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREK 143 (146)
T ss_dssp HHHHHCCC-----------------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccCcc-CcccCCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhh
Confidence 5888877443222 122334456778899999999999999999999999999999999999999999999999999998
Q ss_pred Hh
Q psy2123 84 RN 85 (143)
Q Consensus 84 k~ 85 (143)
|.
T Consensus 144 r~ 145 (146)
T 1au7_A 144 RV 145 (146)
T ss_dssp SC
T ss_pred cc
Confidence 74
No 47
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.81 E-value=5e-20 Score=109.24 Aligned_cols=54 Identities=43% Similarity=0.721 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
|.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+||.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 48
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.1e-19 Score=117.15 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
.|+.+|+.+|+..|..++||+..++.+||..+||++++|+|||||||+|+++.++.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~ 72 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 72 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999987654
No 49
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=9.7e-20 Score=113.51 Aligned_cols=63 Identities=19% Similarity=0.359 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 25 PKPRRNRTTFNSHQLNALEKVFER---THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 25 ~~~rr~R~~~~~~q~~~L~~~f~~---~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
.+.++.|+.|+..|+.+|+.+|.. ++||+..+++.||..+||++.+|++||+|||+|+++...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 456788999999999999999987 999999999999999999999999999999999998654
No 50
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.81 E-value=7.7e-20 Score=114.22 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 27 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 27 ~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
.++.|+.|+..|+.+|+..|..++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 4678999999999999999999999999999999999999999999999999999998654
No 51
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=6e-20 Score=115.36 Aligned_cols=61 Identities=30% Similarity=0.421 Sum_probs=56.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 27 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 27 ~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
..+.|+.|+..|+.+|+..|..++||+..+++.||..+||++.+|++||||||+|+|+..+
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 3456899999999999999999999999999999999999999999999999999998654
No 52
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.81 E-value=6.4e-20 Score=120.10 Aligned_cols=63 Identities=24% Similarity=0.419 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhh
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~ 86 (143)
....++.|+.|+..|+.+|+..|..++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 445667899999999999999999999999999999999999999999999999999999864
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=114.12 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFER---THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~---~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
..+.++.|+.|+..|+.+|+.+|.. ++||+..+++.||..+||++.+|++||+|+|+|+++....
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 3456788999999999999999987 5999999999999999999999999999999999886543
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.80 E-value=5.5e-20 Score=118.29 Aligned_cols=62 Identities=35% Similarity=0.673 Sum_probs=57.8
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhhh
Q psy2123 28 RRNRTTFNSHQLNALEKVF---ERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERNF 89 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f---~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~~ 89 (143)
||.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.+|++||+|||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 5789999999999999999 8999999999999999999999999999999999999876554
No 55
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.80 E-value=3.9e-20 Score=130.36 Aligned_cols=82 Identities=27% Similarity=0.479 Sum_probs=66.9
Q ss_pred cccccccccC---CCCCC-cccccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhH
Q psy2123 3 YDWMLTLRCD---GEDDD-YDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNR 78 (143)
Q Consensus 3 ~~w~~~~~~~---~~~~~-~~~~~~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNr 78 (143)
+.||++.+.. +.... ....+...+++|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++|||||
T Consensus 65 ~~Wl~e~e~~~~~~~~~~~~~~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNr 144 (151)
T 3d1n_I 65 EKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNR 144 (151)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHCSSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCcccccccCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHH
Confidence 4588876632 11111 1122344567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy2123 79 RAKFRR 84 (143)
Q Consensus 79 R~k~rk 84 (143)
|+|+||
T Consensus 145 R~k~Kk 150 (151)
T 3d1n_I 145 RQTLKN 150 (151)
T ss_dssp HHHHTC
T ss_pred HhccCC
Confidence 999986
No 56
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.80 E-value=1.9e-19 Score=112.12 Aligned_cols=61 Identities=34% Similarity=0.646 Sum_probs=57.5
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 28 RRNRTTFNSHQLNALEKVF---ERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f---~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
++.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.+|++||+|||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5789999999999999999 899999999999999999999999999999999999986554
No 57
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=2e-19 Score=108.96 Aligned_cols=59 Identities=24% Similarity=0.352 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHH
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFER-THYPDAFVREELAKKVCLSEARVQVWFQNRRAKF 82 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~-~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~ 82 (143)
.++++|.||.|+.+|+.+|+..|+. +.||+...++.||.++||++++|++||||+|--.
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 4567899999999999999999999 9999999999999999999999999999999753
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.1e-19 Score=114.30 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhhh
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERNF 89 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~~ 89 (143)
..|+..|+.+|+..|..++||+..+++.||..+||++.+|++||||||+|+|+.++..
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 3489999999999999999999999999999999999999999999999999876543
No 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.79 E-value=8.3e-20 Score=129.82 Aligned_cols=61 Identities=30% Similarity=0.480 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 25 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 25 ~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
.+.||.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678899999999999999999999999999999999999999999999999999999984
No 60
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=9.8e-20 Score=110.71 Aligned_cols=58 Identities=28% Similarity=0.533 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 27 PRRNRTTFNSHQLNALEKVF---ERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 27 ~rr~R~~~~~~q~~~L~~~f---~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
.++.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.+|++||+|+|+++||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 56789999999999999999 89999999999999999999999999999999999876
No 61
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.78 E-value=4.9e-19 Score=106.28 Aligned_cols=55 Identities=29% Similarity=0.440 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 31 RTTFNSHQLNALEKVFER---THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~---~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
|+.|+..|+.+|+.+|.. ++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 678999999999999999 9999999999999999999999999999999999873
No 62
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.77 E-value=8.9e-20 Score=129.03 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=64.6
Q ss_pred ccccccccCCCC-CCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHH
Q psy2123 4 DWMLTLRCDGED-DDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKF 82 (143)
Q Consensus 4 ~w~~~~~~~~~~-~~~~~~~~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~ 82 (143)
.|+.+.+..... +..+.+....+.+|.|+.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||||||+|+
T Consensus 72 ~Wl~eae~~~~~~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~ 151 (155)
T 3l1p_A 72 KWVEEADNNENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKG 151 (155)
T ss_dssp HHHHHHTTCHHHHHSSCC---CCCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCccccccccccccCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccc
Confidence 488776632211 1111122224567889999999999999999999999999999999999999999999999999999
Q ss_pred HHh
Q psy2123 83 RRN 85 (143)
Q Consensus 83 rk~ 85 (143)
||.
T Consensus 152 Kr~ 154 (155)
T 3l1p_A 152 KRS 154 (155)
T ss_dssp HC-
T ss_pred cCC
Confidence 974
No 63
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.77 E-value=8.6e-19 Score=111.82 Aligned_cols=59 Identities=27% Similarity=0.379 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 29 RNRTTFNSHQLNALEKVFER---THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 29 r~R~~~~~~q~~~L~~~f~~---~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
+.|+.|+..|+.+|+.+|.. ++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 45667999999999999999 999999999999999999999999999999999998643
No 64
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.77 E-value=1.3e-18 Score=111.92 Aligned_cols=58 Identities=28% Similarity=0.418 Sum_probs=54.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 26 KPRRNRTTFNSHQLNALEKVFER---THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 26 ~~rr~R~~~~~~q~~~L~~~f~~---~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
++++.|+.|+..|+.+|+.+|.. ++||+..++..||..+||++.+|++||+|||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 35566899999999999999999 99999999999999999999999999999999987
No 65
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=2.5e-19 Score=111.42 Aligned_cols=58 Identities=29% Similarity=0.479 Sum_probs=53.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 28 RRNRTTFNSHQLNALEKVF-ERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f-~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
.+.|..++.+|+.+||..| ..++||+..++.+||..+||++++|++||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4556678889999999999 999999999999999999999999999999999999974
No 66
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.76 E-value=3.8e-19 Score=116.90 Aligned_cols=65 Identities=31% Similarity=0.455 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------------cC---CChhHHHHHHhhHHHHH
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKK------------------VC---LSEARVQVWFQNRRAKF 82 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~------------------lg---l~~~~V~~WFqNrR~k~ 82 (143)
.++.+|.|+.|+..|+.+|+..|..++||+..++++||.. || |++.+|++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4567889999999999999999999999999999999999 88 99999999999999988
Q ss_pred HHhhhh
Q psy2123 83 RRNERN 88 (143)
Q Consensus 83 rk~~~~ 88 (143)
+++.+.
T Consensus 86 k~k~~~ 91 (99)
T 1lfb_A 86 AFRHKL 91 (99)
T ss_dssp SCCC--
T ss_pred HHhchh
Confidence 776543
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=105.29 Aligned_cols=53 Identities=21% Similarity=0.416 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhh
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~ 86 (143)
-+.+|+.+|+..|..++||+..++.+||..+||++.+|++||||||+|+|+..
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 46899999999999999999999999999999999999999999999999753
No 68
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=9.7e-19 Score=107.76 Aligned_cols=57 Identities=37% Similarity=0.600 Sum_probs=53.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
-..++..|+..|+..|..++||+..++.+||..+||++++|++||||||+|+|+...
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 346899999999999999999999999999999999999999999999999998654
No 69
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.74 E-value=1.1e-18 Score=124.31 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 23 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 23 ~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
...+.+|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 34567889999999999999999999999999999999999999999999999999999887543
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-18 Score=104.69 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
+..+...|+.+|+..|..++||+..++.+||..+||++++|++||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 345678999999999999999999999999999999999999999999998765
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=1.3e-18 Score=105.36 Aligned_cols=50 Identities=32% Similarity=0.450 Sum_probs=46.4
Q ss_pred HHHHHHHHHHH-HhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 36 SHQLNALEKVF-ERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 36 ~~q~~~L~~~f-~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
+.|+.+||..| ..++||+..++.+||.+|||+++||++||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 45899999999 578999999999999999999999999999999998863
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.72 E-value=1.4e-18 Score=126.63 Aligned_cols=62 Identities=32% Similarity=0.462 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcC---------------------CChhHHHHHHhhHHHH
Q psy2123 23 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVC---------------------LSEARVQVWFQNRRAK 81 (143)
Q Consensus 23 ~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lg---------------------l~~~~V~~WFqNrR~k 81 (143)
..++.||.|+.|+..|+.+|+..|..++||+..++++||..|+ |++.+|++||||||++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3456788999999999999999999999999999999999999 9999999999999998
Q ss_pred HHH
Q psy2123 82 FRR 84 (143)
Q Consensus 82 ~rk 84 (143)
++.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 764
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=8.8e-17 Score=98.49 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 33 TFNSHQLNALEKVFE---RTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~---~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
.|+.+|+.+|+.+|. .++||+..++..||..+||++.+|++||+|+|+|.++...
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 689999999999999 9999999999999999999999999999999999997543
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=92.61 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 36 SHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 36 ~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
.+|+.+|+.+|..+++|+..++..||..+||++++|++||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.60 E-value=8.8e-16 Score=113.31 Aligned_cols=62 Identities=32% Similarity=0.502 Sum_probs=53.4
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcC---------------------CChhHHHHHHhhHH
Q psy2123 21 ERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVC---------------------LSEARVQVWFQNRR 79 (143)
Q Consensus 21 ~~~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lg---------------------l~~~~V~~WFqNrR 79 (143)
....++.||.|+.|++.|+.+|+.+|..++||+..++++||..|| |++.+|++||+|||
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 344567889999999999999999999999999999999999988 89999999999999
Q ss_pred HHH
Q psy2123 80 AKF 82 (143)
Q Consensus 80 ~k~ 82 (143)
++.
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 864
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=93.08 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 31 RTTFNSHQLNALEKVFER---THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~---~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
-..|..+++.+|+.+|.. ++||+..++.+||.++||++.||++||+|+|.|.++....
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 346899999999999987 9999999999999999999999999999999999886544
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.40 E-value=1.4e-13 Score=109.12 Aligned_cols=55 Identities=29% Similarity=0.494 Sum_probs=51.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 29 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 29 r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
+-++.++..|+..|+..|..++||+..+|++||.++||+++||++||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4567899999999999999999999999999999999999999999999998864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.78 E-value=3.3e-10 Score=60.76 Aligned_cols=21 Identities=38% Similarity=0.820 Sum_probs=18.4
Q ss_pred hHHHHHHhhHHHHHHHhhhhh
Q psy2123 69 ARVQVWFQNRRAKFRRNERNF 89 (143)
Q Consensus 69 ~~V~~WFqNrR~k~rk~~~~~ 89 (143)
+||+|||||||+|+||.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 479999999999999987763
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.84 E-value=0.002 Score=38.82 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhh
Q psy2123 38 QLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 38 q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqN 77 (143)
-..+|+++|...+.+.......|+.+..|+..+|+-||-.
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3579999999999999999999999999999999999964
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=88.99 E-value=1.4 Score=24.78 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhH
Q psy2123 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNR 78 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNr 78 (143)
|..|+.+....+...+... ........++|..+|++...|..|....
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3468888766664444432 2212225689999999999999997643
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=88.46 E-value=2.1 Score=27.70 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 30 NRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 30 ~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
.|..++.++...+-..+..+..... .+||..+|++...|..|..++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 5678999998777777755555543 367899999999999999887654
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=88.09 E-value=1.9 Score=26.33 Aligned_cols=49 Identities=10% Similarity=0.254 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
++..+..+|...|-.. ....+||..+|++...|+.+...-+.+.++...
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 5666777776655322 135788999999999999999888888776544
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=87.66 E-value=3.2 Score=25.14 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=32.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhh
Q psy2123 27 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 27 ~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqN 77 (143)
.++.+..|+.++.......+. ... -..++|..+|++...|..|...
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 344566788888655555554 222 2567899999999999999853
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=83.29 E-value=3.1 Score=23.51 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
.+++.+..+|...|-.. ....++|..+|++...|+.+...-+.+.++.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 36788888888876433 2356889999999999999988777666653
No 85
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=81.72 E-value=5.7 Score=24.89 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
...+++.+..+|...++-- ...+||..+|++...|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4568999999998765322 2478999999999999999886665543
No 86
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=80.95 E-value=3.9 Score=25.21 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
.+++.+..+|...+.. + ...+||..+|++...|+.+..+-+.|.+..
T Consensus 27 ~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGLLSEG--L----TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHHHHTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 5889999999886432 2 246899999999999999888777666543
No 87
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=79.34 E-value=4.7 Score=20.59 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhh
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqN 77 (143)
.++.++...+...+.. .+ ...+||..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHhh
Confidence 4667666555555543 22 2567899999999999999853
No 88
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=78.92 E-value=7 Score=25.06 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
.+++.+..++...|.... ...++|..+|++...|+.+...-+.+.++.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 367788888877754332 356889999999999999998888776654
No 89
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=78.34 E-value=6.5 Score=22.64 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
.+++.+..+|...|-.... ......++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4688899999888852100 0113468899999999999999887776666
No 90
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=77.45 E-value=1.5 Score=23.04 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHH
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR 79 (143)
++.++...+...+... . ...+||..+|++...|..|+....
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 4455555554555432 2 356789999999999999986543
No 91
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=77.43 E-value=4 Score=24.40 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
..+++.+..+|...+ ..+ ...+||..+|++...|+.+..+-+.|.+.
T Consensus 20 ~~Lt~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIA--QGL----PNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 458899999988843 222 45689999999999999988876666544
No 92
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=76.80 E-value=6.5 Score=25.64 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
+++.+..+|. .|- ......+||..+|++...|+.+...-+.+.|+....
T Consensus 110 L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 110 FSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp SCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555 332 222457889999999999999998877777765443
No 93
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=76.72 E-value=5.3 Score=22.75 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
..+++.+..+|...+ ..+ ...++|..+|++...|+.+...-+.+.+.
T Consensus 10 ~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 458899999998843 223 35679999999999999988876665543
No 94
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=75.16 E-value=9.2 Score=24.38 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhh
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~ 86 (143)
+++.+..+|...|-... ...++|..+|++...|+.+...-|.+.++..
T Consensus 26 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 66777777777653321 3578899999999999999988877776543
No 95
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=74.83 E-value=8.2 Score=23.50 Aligned_cols=41 Identities=10% Similarity=0.283 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHcCCChhHHHHHHh
Q psy2123 32 TTFNSHQLNALEKVFERT-HYPDAFVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~-~~p~~~~~~~La~~lgl~~~~V~~WFq 76 (143)
..|+.++....-..+... .. ....+|..+|++...|..|..
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 468888765555555322 22 356889999999999999985
No 96
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=74.39 E-value=7 Score=23.47 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
.+++.+..+|...|-.... ......+||..+|++...|+.+...-+.+.++
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3678888888888742100 01235678999999999999998877766654
No 97
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=72.99 E-value=4.6 Score=22.96 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
.+++.+..+|...|..+.+- .....++|..+|++...|+.+...-+.+.++
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 36788888988887321110 1234678999999999999988766655554
No 98
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=71.56 E-value=9.7 Score=26.54 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhh
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~ 86 (143)
+++.+..+|...|-.. ....+||..+|++...|+.+...-+.+.|+..
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665322 23567899999999999999988787777654
No 99
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=71.44 E-value=9.5 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=25.4
Q ss_pred HHHHHHHcCCChhHHHHHHhhHHHHHHHhh
Q psy2123 57 REELAKKVCLSEARVQVWFQNRRAKFRRNE 86 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR~k~rk~~ 86 (143)
..++|..+|++...|+.+...-|.+.|+..
T Consensus 159 ~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 159 YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999988887777654
No 100
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=71.41 E-value=7.3 Score=25.90 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=38.9
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHHHHH-HHc--CCChhHHHHHHhhH
Q psy2123 28 RRNRTTFNSHQLNALEKVF-ERTHYPDAFVREELA-KKV--CLSEARVQVWFQNR 78 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f-~~~~~p~~~~~~~La-~~l--gl~~~~V~~WFqNr 78 (143)
++.|..+|.+|...|-.++ +.++..+..+....| ..+ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 4578899999999998888 678877766555543 257 78888899998763
No 101
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=70.95 E-value=8.6 Score=23.19 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
..+++.+..+|...+. .+ ...+||..+|++...|+.+..+-+.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3578889999887543 22 23478999999999999988876666543
No 102
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=69.08 E-value=7.8 Score=22.39 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
+++.+..+|...+ ..+ ...++|..+|++...|+.+..+-+.|.+.
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 5677777776642 222 34589999999999999988776666553
No 103
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=68.94 E-value=22 Score=23.50 Aligned_cols=46 Identities=7% Similarity=0.010 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHH------cCCChhHHHHHHhh
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREE-LAKK------VCLSEARVQVWFQN 77 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~-La~~------lgl~~~~V~~WFqN 77 (143)
..++.++...|......++..+..+... |... ..++...|..|+..
T Consensus 82 ~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 82 KVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 4567777777878777777666655443 3222 24678888888853
No 104
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=68.09 E-value=18 Score=22.02 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 30 NRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 30 ~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
....++..+..+|.-.++ .+ ...+||..+|++...|+....+-+.|
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345689999999988762 22 35689999999999999887765544
No 105
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=67.48 E-value=7.4 Score=25.88 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
.+.+.+..+|.-.| ...-...+||..+|++...|+.....-|.+.|+.
T Consensus 93 ~Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~ 140 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQ 140 (157)
T ss_dssp TSCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 35666666665433 2223467899999999999999998777776654
No 106
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=65.34 E-value=7.6 Score=21.25 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=22.6
Q ss_pred HHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 58 EELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 58 ~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
.++|..+|++...|+.+..+-+.|.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 578999999999999998877666554
No 107
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=62.89 E-value=5.9 Score=23.43 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred HHHHHHHcCCChhHHHHHHhhH
Q psy2123 57 REELAKKVCLSEARVQVWFQNR 78 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNr 78 (143)
..+||..||++...|..|..++
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~ 34 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAG 34 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHhCC
Confidence 6789999999999999998754
No 108
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=62.57 E-value=22 Score=21.86 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHH-Hhc-CCCCH-HHHHHHHHHcCCChhHHHHHHh
Q psy2123 32 TTFNSHQLNALEKVF-ERT-HYPDA-FVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f-~~~-~~p~~-~~~~~La~~lgl~~~~V~~WFq 76 (143)
..|+.++....-..+ ... .+.+. .....+|..+|++...|..|..
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 458888765444433 321 12221 3567899999999999999975
No 109
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=62.29 E-value=14 Score=22.06 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHcCCChhHHHHHHh
Q psy2123 33 TFNSHQLNALEKVFER-----THYPDAFVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~-----~~~p~~~~~~~La~~lgl~~~~V~~WFq 76 (143)
.++.++...+...|.. +.+.+..+...+...+|++...+...|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678888889888853 5578888888888888988887776664
No 110
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=61.72 E-value=5.6 Score=26.73 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 38 QLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 38 q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
-++.-...|....| . .....||...|++...|...|.|+-.
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHH
Confidence 35555666888888 5 68889999999999999999998754
No 111
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=61.60 E-value=13 Score=19.84 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHh
Q psy2123 36 SHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 36 ~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFq 76 (143)
..+...+...+.. .+ ...++|..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 5555555555532 22 356789999999999999975
No 112
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=61.37 E-value=5.4 Score=23.75 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
+.++.-.|+.|+||...-... | =.|||.+|+..+..
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHH
Confidence 456666789999987542211 1 26888888877654
No 113
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=61.22 E-value=14 Score=22.27 Aligned_cols=44 Identities=9% Similarity=0.140 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCCChhHHHHHHh
Q psy2123 33 TFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl~~~~V~~WFq 76 (143)
.++.++...|...|. .+.+.+..+...+...+|++...+..+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 356778888888884 34578888888888888999888887764
No 114
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=60.37 E-value=9.6 Score=22.60 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCCChhHHHHHHh
Q psy2123 32 TTFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl~~~~V~~WFq 76 (143)
..++..++..|...|. .+.+.+..+...+...+|++...|..+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 3467788888888884 35578899999888899998888888875
No 115
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=59.65 E-value=6.4 Score=22.91 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.5
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998765
No 116
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=58.20 E-value=20 Score=21.99 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHHh
Q psy2123 31 RTTFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCL--SEARVQVWFQ 76 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl--~~~~V~~WFq 76 (143)
...++.+++..|...|. .+.+.+..+...+...+|+ +...|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45688999999999985 4568999999998888874 5667777774
No 117
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=57.64 E-value=0.081 Score=36.73 Aligned_cols=30 Identities=3% Similarity=-0.101 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCH
Q psy2123 25 PKPRRNRTTFNSHQLNALEKVFERTHYPDA 54 (143)
Q Consensus 25 ~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~ 54 (143)
.+.+|.|+.|+..|+.+|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788999999999999999999998864
No 118
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=56.63 E-value=28 Score=24.64 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
..+++.+..+|.-.++ .+ .-.+||..+|++...|+....+-+.|..
T Consensus 174 ~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4588888888866542 22 3467899999999999999887776654
No 119
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=55.56 E-value=7 Score=21.37 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=19.8
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998754
No 120
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=54.01 E-value=7.8 Score=21.32 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 46789999999999999998754
No 121
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=53.13 E-value=33 Score=22.47 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCCChh
Q psy2123 31 RTTFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCLSEA 69 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl~~~ 69 (143)
|..++.+|+..|...|. .+.+.+..+...+...+|+...
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 46799999999999995 4568999999888888886543
No 122
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=52.96 E-value=23 Score=25.53 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
..+++.+..+|.-.+ ..+ ...++|..+|++...|+....+-|.|.+..
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 458888988888764 222 356789999999999999888777766543
No 123
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=52.53 E-value=38 Score=21.02 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhh
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~ 86 (143)
+++.+..++.-.|-.+.. ......++|..+|++...|+.....-+.+.|+..
T Consensus 20 Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 567777888777743211 1124568899999999999998877766666543
No 124
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=52.22 E-value=8.3 Score=21.45 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.3
Q ss_pred HHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467899999999999999987653
No 125
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=51.70 E-value=12 Score=25.19 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
++.-...|....| . .....||...|++...|...|.|+..
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 3444555888887 5 67889999999999999999999754
No 126
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=51.33 E-value=3.9 Score=26.58 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhhh
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERNF 89 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~~ 89 (143)
+.++.-.|+.|+||...-... ==+|||.+||..+++.
T Consensus 15 vRiIkiLyQSNPyP~peGTRq--------------aRRNRRRRWR~RQrQI 51 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEGTRQ--------------ARRNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHHSSCCCCCCCCTT--------------THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchh--------------hhHhHHHHHHHHHHHH
Confidence 345566689999987531111 1268899988876653
No 127
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=51.26 E-value=9.2 Score=21.64 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998754
No 128
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=51.17 E-value=9.7 Score=21.55 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998763
No 129
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=50.78 E-value=16 Score=24.42 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=21.3
Q ss_pred HHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 59 ELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 59 ~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
+||..+|++...|+.+...-|.+.|+.
T Consensus 156 eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 156 ELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp CSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 456777899999999998777776653
No 130
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=50.18 E-value=5.2 Score=24.83 Aligned_cols=12 Identities=42% Similarity=0.897 Sum_probs=8.7
Q ss_pred HHHHHHhhHHHH
Q psy2123 70 RVQVWFQNRRAK 81 (143)
Q Consensus 70 ~V~~WFqNrR~k 81 (143)
-|-.||+||-+.
T Consensus 18 liwlwfrnrpaa 29 (117)
T 1w8x_P 18 LIWLWFRNRPAA 29 (117)
T ss_dssp HHHHHHHHTTCS
T ss_pred HHHHHHccChHH
Confidence 467899987653
No 131
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=49.78 E-value=40 Score=23.79 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
...+++.+..+|.-.+ ..+ ...+||..+|+++..|+....+-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~--~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIA--VGK----TMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 3458888888886643 222 3567899999999999998887766644
No 132
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=49.23 E-value=38 Score=21.41 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhh
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqN 77 (143)
..++.++...+...+.. .. ...++|..+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~-G~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHc
Confidence 34777777666666643 22 2567899999999999999974
No 133
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=49.19 E-value=10 Score=21.94 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.5
Q ss_pred HHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 457999999999999999987654
No 134
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=49.16 E-value=47 Score=20.92 Aligned_cols=44 Identities=5% Similarity=0.086 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcC--CChhHHHHHHhhHHH
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVC--LSEARVQVWFQNRRA 80 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lg--l~~~~V~~WFqNrR~ 80 (143)
.+++++...+... ..++..+. .+|+..+| ++...|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 4788887777666 44555554 45677778 788999999976544
No 135
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=48.97 E-value=10 Score=21.38 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.3
Q ss_pred HHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999987543
No 136
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=48.42 E-value=11 Score=20.84 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.1
Q ss_pred HHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999877543
No 137
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=48.39 E-value=9.5 Score=21.36 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=17.5
Q ss_pred HHHHHHHcCCChhHHHHHH
Q psy2123 57 REELAKKVCLSEARVQVWF 75 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WF 75 (143)
..+||..+|++...|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999998
No 138
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=47.10 E-value=11 Score=21.26 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=19.7
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46789999999999999998754
No 139
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=45.76 E-value=17 Score=21.16 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.4
Q ss_pred HHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467899999999999999987543
No 140
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=45.65 E-value=26 Score=19.97 Aligned_cols=41 Identities=10% Similarity=0.031 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHH
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..++.+.+..+....... ..+||..+|++...|..|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 457888887776654322 46789999999999999988754
No 141
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=45.50 E-value=16 Score=20.81 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.0
Q ss_pred HHHHHHHcCCChhHHHHHHhh
Q psy2123 57 REELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqN 77 (143)
..++|..||++...|+.|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 457899999999999999864
No 142
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=45.30 E-value=14 Score=21.62 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.4
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998875
No 143
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=44.27 E-value=13 Score=22.31 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 46789999999999999998764
No 144
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=44.13 E-value=13 Score=21.00 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.2
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998865
No 145
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=44.12 E-value=14 Score=20.67 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=19.6
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999998753
No 146
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=41.60 E-value=17 Score=21.72 Aligned_cols=23 Identities=9% Similarity=0.197 Sum_probs=19.8
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999998764
No 147
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=41.17 E-value=35 Score=23.57 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
..+++.+..+|.-..+. . ...+||..++++.+.|++...+-+.|..
T Consensus 148 ~~LT~rE~~vL~~l~~g---~---s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG---L---TNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHHTT---C---CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCC---C---CHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 45889898888776543 2 3567899999999999999887776643
No 148
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=40.98 E-value=11 Score=25.16 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
++.....|....| . .....||...|++...+...|.|+-.
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 61 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWG 61 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHH
Confidence 4445556888888 5 57889999999999999999998754
No 149
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=40.70 E-value=31 Score=22.01 Aligned_cols=23 Identities=4% Similarity=-0.045 Sum_probs=18.5
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 35678888999999999988754
No 150
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=40.34 E-value=1e+02 Score=22.28 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
..+++.+..+|.-..+ .+ ...+||..+|+++..|+....|-+.|..
T Consensus 196 ~~Lt~re~~vl~~~~~--G~----s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSR--GK----TNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHHHT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4688888888877642 21 3567899999999999999887776644
No 151
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=39.00 E-value=18 Score=20.74 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999998764
No 152
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=38.87 E-value=17 Score=20.78 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45789999999999999998764
No 153
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=38.61 E-value=46 Score=18.83 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcC-CChhHHHHHHh
Q psy2123 33 TFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVC-LSEARVQVWFQ 76 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lg-l~~~~V~~WFq 76 (143)
.+++.+...|...|. .+.+.+..+...+...+| ++...|...|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 467788888888884 345677888877777776 55566666664
No 154
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=38.55 E-value=16 Score=24.78 Aligned_cols=40 Identities=8% Similarity=0.202 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+..-...|.... .......||...|++...|...|.++..
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~ 65 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKER 65 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 444455576666 5566788999999999999999999854
No 155
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=38.54 E-value=18 Score=20.82 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=19.6
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999998764
No 156
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=37.89 E-value=83 Score=22.22 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHH
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKF 82 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~ 82 (143)
..+++.+..+|.-... .+ ...+||..+|+++..|+.-..+-+.|.
T Consensus 174 ~~Lt~re~~vl~~~~~--G~----s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 174 VRLTARETEMLKWTAV--GK----TYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp CCCCHHHHHHHHHHHT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3466666666655432 11 246789999999999998877665553
No 157
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=37.46 E-value=30 Score=24.52 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=33.7
Q ss_pred CCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 32 TTFNSHQ-LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 32 ~~~~~~q-~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
...+.++ +..-...|....|-. .....||..+|++...|...|.|+..=
T Consensus 27 ~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~L 76 (241)
T 2hxi_A 27 RRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTEL 76 (241)
T ss_dssp -CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHHH
Confidence 3444443 445555676666533 345678999999999999999997653
No 158
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=37.34 E-value=18 Score=25.01 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
+..-...|.... ......||..+|++...+...|.|+-.=...
T Consensus 17 l~aA~~l~~~~G---~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~ 59 (213)
T 2g7g_A 17 AEAALELVDRDG---DFRMPDLARHLNVQVSSIYHHAKGRAAVVEL 59 (213)
T ss_dssp HHHHHHHHHHHS---SCCHHHHHHHTTSCHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHhCCCHhHHHHHcCCHHHHHHH
Confidence 445555676666 4556789999999999999999997655443
No 159
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=37.15 E-value=61 Score=21.87 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
..+++.+..+|.-..+.. ...+||..++++.+.|+.-..+-|.|..
T Consensus 153 ~~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 358999998887765432 3678999999999999998888777754
No 160
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=37.13 E-value=67 Score=19.56 Aligned_cols=45 Identities=9% Similarity=-0.051 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-------ChhHHHHHHhh
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCL-------SEARVQVWFQN 77 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl-------~~~~V~~WFqN 77 (143)
.+++++...+......++..+..+......+.|+ +...|..|++.
T Consensus 75 ~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 75 IATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp SSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 5677677777777776666665554433222274 77888888753
No 161
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=37.01 E-value=24 Score=19.42 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=17.9
Q ss_pred HHHHHHHcCCChhHHHHHHhh
Q psy2123 57 REELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqN 77 (143)
..++|..+|++...|..|..+
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~ 36 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRA 36 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 457899999999999999854
No 162
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=36.90 E-value=23 Score=23.36 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 38 QLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 38 q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
-++.-...|....|- .....||...|++...|...|.|+..=
T Consensus 14 Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L 55 (190)
T 3jsj_A 14 LLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDEL 55 (190)
T ss_dssp HHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 355555667777776 667889999999999999999998653
No 163
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=36.67 E-value=26 Score=23.52 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCCCh
Q psy2123 31 RTTFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCLSE 68 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl~~ 68 (143)
++.++.+|+..|...|. .+.+.+..+...+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 35688899999999985 455788888888888887654
No 164
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=36.55 E-value=18 Score=24.54 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
+..-...|....|- .....||...|++...|...|.|+..=
T Consensus 18 l~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~L 58 (224)
T 1t33_A 18 IAAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKEDL 58 (224)
T ss_dssp HHHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHHH
Confidence 34444557777666 567889999999999999999998543
No 165
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=36.10 E-value=27 Score=23.17 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
+......|....|-. .....||...|++...|..+|.|+-.=..
T Consensus 18 l~aA~~lf~e~G~~~-~t~~~IA~~agvsk~tlY~~F~sKe~L~~ 61 (192)
T 2fq4_A 18 LSASYELLLESGFKA-VTVDKIAERAKVSKATIYKWWPNKAAVVM 61 (192)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHcCCCHHHHHHHCCCHHHHHH
Confidence 344444577776643 34667899999999999999999766544
No 166
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=36.09 E-value=21 Score=21.63 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.2
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998864
No 167
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=35.74 E-value=23 Score=20.85 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=16.9
Q ss_pred HHHHHHHcCCChhHHHHHHh
Q psy2123 57 REELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFq 76 (143)
..++|..+|++...|+.|-+
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999954
No 168
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=35.71 E-value=21 Score=20.99 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.7
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998753
No 169
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=35.33 E-value=43 Score=22.45 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 37 HQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 37 ~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
.-+..-...|....|-. .....||...|++...|...|.|+..=
T Consensus 15 ~Il~aA~~lF~~~Gy~~-ts~~~IA~~aGvsk~tlY~~F~sKe~L 58 (202)
T 2i10_A 15 VALQTAMELFWRQGYEG-TSITDLTKALGINPPSLYAAFGSKRDL 58 (202)
T ss_dssp HHHHHHHHHHHHHTTTT-CCHHHHHHHHTCCHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHHHHhCccc-CCHHHHHHHhCCChHHHHHHhCCHHHH
Confidence 33555566687777753 336678999999999999999987654
No 170
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=34.59 E-value=23 Score=20.43 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=18.6
Q ss_pred HHHHHHHcCCChhHHHHHHhh
Q psy2123 57 REELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqN 77 (143)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 457899999999999999987
No 171
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=34.54 E-value=24 Score=20.79 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998765
No 172
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=34.20 E-value=24 Score=20.29 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=19.5
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45789999999999999998753
No 173
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=34.07 E-value=65 Score=18.16 Aligned_cols=45 Identities=7% Similarity=0.099 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCC--ChhH---HHHHHh
Q psy2123 32 TTFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCL--SEAR---VQVWFQ 76 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl--~~~~---V~~WFq 76 (143)
..++..++..|...|. .+.+.+..+...+...+|. +... |..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3467778888888884 3558899999888888875 4455 556553
No 174
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=33.84 E-value=28 Score=20.01 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.4
Q ss_pred HHHHHHHHcCCChhHHHHHHhh
Q psy2123 56 VREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 56 ~~~~La~~lgl~~~~V~~WFqN 77 (143)
...++|+.||++...|..|.+.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 3567899999999999999843
No 175
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=32.77 E-value=23 Score=23.24 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 41 ALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 41 ~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
.-...|... .......||...|++...|...|.++..
T Consensus 22 aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 58 (190)
T 2v57_A 22 AAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTD 58 (190)
T ss_dssp HHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 334445554 5566788999999999999999999754
No 176
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=32.73 E-value=11 Score=20.05 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhh
Q psy2123 37 HQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 37 ~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqN 77 (143)
+.-..|..+-.+.+-.+.....+.|.++||....|..+|+.
T Consensus 7 everklkefvrrhqeitqetlheyaqklglnqqaieqffre 47 (52)
T 1y66_A 7 EVERKLKEFVRRHQEITQETLHEYAQKLGLNQQAIEQFFRE 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33344555444444555566677899999999989998864
No 177
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=32.56 E-value=23 Score=23.66 Aligned_cols=41 Identities=10% Similarity=0.382 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|-. .....||...|++...+...|.++-.
T Consensus 37 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 37 IKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 445555577777642 34667899999999999999999864
No 178
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=32.52 E-value=70 Score=19.73 Aligned_cols=45 Identities=7% Similarity=0.041 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCCChhHHHHHHh
Q psy2123 32 TTFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl~~~~V~~WFq 76 (143)
..++.++...|...|. .+.+.+..+...+....+++...|..+|.
T Consensus 6 w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~ 55 (111)
T 2kgr_A 6 WAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWN 55 (111)
T ss_dssp SSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4577788888888885 24467777777766667777777776663
No 179
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=32.41 E-value=24 Score=21.08 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.5
Q ss_pred HHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
..+||..+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999988654
No 180
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=32.15 E-value=48 Score=21.74 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|-. .....||...|++...|...|.++..
T Consensus 23 l~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 63 (206)
T 3kz9_A 23 MEIALEVFARRGIGR-GGHADIAEIAQVSVATVFNYFPTRED 63 (206)
T ss_dssp HHHHHHHHHHSCCSS-CCHHHHHHHHTSCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHhcCccc-ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 334444577777643 33567899999999999999999754
No 181
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=31.93 E-value=31 Score=18.94 Aligned_cols=23 Identities=13% Similarity=0.084 Sum_probs=19.2
Q ss_pred HHHHHHHcC--CChhHHHHHHhhHH
Q psy2123 57 REELAKKVC--LSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lg--l~~~~V~~WFqNrR 79 (143)
..+||..+| ++...|..|..+++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 457899999 99999999987753
No 182
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=30.80 E-value=25 Score=23.78 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
++.....|....|-. .....||...|++...+...|.++..=...
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~ 78 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDDLFDQ 78 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHHHHHH
Confidence 444555677777643 346678999999999999999998665443
No 183
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=30.79 E-value=74 Score=17.77 Aligned_cols=45 Identities=4% Similarity=0.087 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHcC--CChhHHHHHHh
Q psy2123 32 TTFNSHQLNALEKVFER-----THYPDAFVREELAKKVC--LSEARVQVWFQ 76 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~-----~~~p~~~~~~~La~~lg--l~~~~V~~WFq 76 (143)
..++..++..|...|.. +.+.+..+...+...+| ++...|...|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 35788899999999853 45678888888877777 45566766664
No 184
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=30.76 E-value=80 Score=18.17 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=37.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 27 PRRNRTTFNSHQLNALEKVFERTH--YPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 27 ~rr~R~~~~~~q~~~L~~~f~~~~--~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
.++.|..++++.-.....+...-. .-.+..+.++-..-||+..+|+.=.|.-|.+.+|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 356788899876544444433332 2234445555555688999999999988877665
No 185
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=30.74 E-value=1.1e+02 Score=19.86 Aligned_cols=40 Identities=5% Similarity=0.044 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhh
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqN 77 (143)
.++.++...+...+... + ...++|..+|++...|..|++.
T Consensus 25 ~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 57777766666666432 2 2457899999999999999964
No 186
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=30.58 E-value=29 Score=20.95 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=19.5
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~ 68 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRS 68 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 45789999999999999987654
No 187
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=30.53 E-value=97 Score=19.08 Aligned_cols=44 Identities=5% Similarity=0.020 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHcCCChhHHHHHH
Q psy2123 32 TTFNSHQLNALEKVFER----THYPDAFVREELAKKVCLSEARVQVWF 75 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~----~~~p~~~~~~~La~~lgl~~~~V~~WF 75 (143)
..++.++...+...|.. +.+.+..+...+-..+|++...+...|
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~ 54 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVW 54 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 45677788888888853 456777777777777888877766555
No 188
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=30.38 E-value=37 Score=23.71 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
++.....|....|- ......||...|++...|...|.++..=
T Consensus 49 l~AA~~lf~~~G~~-~~t~~~IA~~aGvs~~tlY~~F~sK~~L 90 (255)
T 3g1o_A 49 LATAENLLEDRPLA-DISVDDLAKGAGISRPTFYFYFPSKEAV 90 (255)
T ss_dssp HHHHHHHHTTSCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCCc-cCcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 33444446666552 2345678999999999999999998543
No 189
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=30.26 E-value=66 Score=17.52 Aligned_cols=43 Identities=9% Similarity=0.173 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHHh
Q psy2123 34 FNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCL--SEARVQVWFQ 76 (143)
Q Consensus 34 ~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl--~~~~V~~WFq 76 (143)
++..++..|...|. .+.+.+..+...+...+|. +...|...|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 35677778888874 3456778888887777775 4445665553
No 190
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=30.14 E-value=31 Score=21.28 Aligned_cols=23 Identities=9% Similarity=0.239 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998764
No 191
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=29.83 E-value=1e+02 Score=19.89 Aligned_cols=46 Identities=7% Similarity=0.151 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHcCCChhHHH-HHH
Q psy2123 30 NRTTFNSHQLNALEKVFER----THYPDAFVREELAKKVCLSEARVQ-VWF 75 (143)
Q Consensus 30 ~R~~~~~~q~~~L~~~f~~----~~~p~~~~~~~La~~lgl~~~~V~-~WF 75 (143)
....+++++...+.+.|.. +.+.+..+...+-...||+...+. ||-
T Consensus 23 ~~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw~ 73 (121)
T 3fia_A 23 DTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWA 73 (121)
T ss_dssp TTSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3567899999999999964 346777787777778898876644 563
No 192
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=29.76 E-value=1.1e+02 Score=19.54 Aligned_cols=48 Identities=6% Similarity=-0.004 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHc----C--CChhHHHHHHhhH
Q psy2123 31 RTTFNSHQLNALEKVFERTHYPDAFVREE-LAKKV----C--LSEARVQVWFQNR 78 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~-La~~l----g--l~~~~V~~WFqNr 78 (143)
...++.++...+......++..+..+... |.... | ++...|..|+...
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 34578888888888888777666554433 22221 5 6788899998654
No 193
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=29.65 E-value=31 Score=19.95 Aligned_cols=23 Identities=13% Similarity=-0.036 Sum_probs=20.3
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45899999999999999998865
No 194
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=29.13 E-value=61 Score=19.46 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCChhHHHHHHhhH
Q psy2123 56 VREELAKKVCLSEARVQVWFQNR 78 (143)
Q Consensus 56 ~~~~La~~lgl~~~~V~~WFqNr 78 (143)
....||..+|++.+.+...|+..
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 46678999999999888877543
No 195
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=29.12 E-value=84 Score=17.89 Aligned_cols=44 Identities=2% Similarity=0.053 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHHh
Q psy2123 33 TFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCL--SEARVQVWFQ 76 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl--~~~~V~~WFq 76 (143)
.++..++..|...|. .+.+.+..+...+...+|+ +...|...|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 377888888888884 3457888888888888775 4566776664
No 196
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=28.83 E-value=34 Score=22.71 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR 79 (143)
++.....|....|-. .....||...|++...|...|.++-
T Consensus 23 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 23 STVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCHH
Confidence 445555577777643 3456789999999999999999874
No 197
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=28.58 E-value=30 Score=24.60 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=37.1
Q ss_pred CCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 31 RTTFNSHQ-LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 31 R~~~~~~q-~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
|...+.++ +..-...|....|-. .....||..+|++...|...|.|+..=....
T Consensus 16 r~~~tr~~Il~AA~~l~~e~G~~~-~S~~~IA~~aGvs~~tlY~hF~sK~~Ll~av 70 (243)
T 2g7l_A 16 KPALSRRWIVDTAVALMRAEGLEK-VTMRRLAQELDTGPASLYVYVANTAELHAAV 70 (243)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCSSS-CCHHHHHHHTTSCHHHHTTTCCSHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHhcCchh-cCHHHHHHHHCCChhHHHHHcCCHHHHHHHH
Confidence 33345543 455566677777633 3456789999999999999999976654443
No 198
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=28.55 E-value=1.1e+02 Score=19.11 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHH-----h-cCCCCHHHHHHHHHHcC--CChhHHHHHHh
Q psy2123 32 TTFNSHQLNALEKVFE-----R-THYPDAFVREELAKKVC--LSEARVQVWFQ 76 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~-----~-~~~p~~~~~~~La~~lg--l~~~~V~~WFq 76 (143)
..++..++..|...|. . +.+.+..+...+...+| ++...+..+|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 10 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4578888888888884 2 55788888888877777 45556666664
No 199
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=28.43 E-value=30 Score=23.91 Aligned_cols=53 Identities=13% Similarity=0.282 Sum_probs=35.1
Q ss_pred CCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 30 NRTTFNSHQ-LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 30 ~R~~~~~~q-~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
.|...+.++ +......|....|-. .....||..+|++...|...|.++..=..
T Consensus 21 ~r~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K~~L~~ 74 (211)
T 3fiw_A 21 GMTKMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTKRDLLT 74 (211)
T ss_dssp ---CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 344445544 555566677666532 23567899999999999999999766443
No 200
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=28.31 E-value=41 Score=19.09 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.1
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
...||..+|++...|..++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35789999999999999998875
No 201
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=27.93 E-value=1.2e+02 Score=19.21 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=32.1
Q ss_pred CCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHcCC--ChhHHHHHH
Q psy2123 29 RNRTTFNSHQLNALEKVFER-----THYPDAFVREELAKKVCL--SEARVQVWF 75 (143)
Q Consensus 29 r~R~~~~~~q~~~L~~~f~~-----~~~p~~~~~~~La~~lgl--~~~~V~~WF 75 (143)
+.+..++..++..|...|.. +.+.+..+...+...+|+ +...|...|
T Consensus 17 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 17 KGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp ---CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44677999999999999853 457888888887777775 334444444
No 202
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=27.87 E-value=35 Score=23.25 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
++.-...|....|-. .....||...|++...|...|.|+-.
T Consensus 41 l~aA~~lf~~~G~~~-~t~~~IA~~AGvs~~tlY~~F~sKe~ 81 (221)
T 3g7r_A 41 LGTATRIFYAEGIHS-VGIDRITAEAQVTRATLYRHFSGKDD 81 (221)
T ss_dssp HHHHHHHHHHHCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 334444577776643 34567899999999999999999854
No 203
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=26.94 E-value=60 Score=21.40 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
++.....|....|-. .....||...|++...+...|.++..
T Consensus 22 l~aa~~lf~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 62 (213)
T 2qtq_A 22 LQTASNIMREGDVVD-ISLSELSLRSGLNSALVKYYFGNKAG 62 (213)
T ss_dssp HHHHHHHHHHHTSSC-CCHHHHHHHHCCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHhCCChhhHhHhcCCHHH
Confidence 455556677777643 23567899999999999999999854
No 204
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=26.92 E-value=36 Score=19.78 Aligned_cols=21 Identities=5% Similarity=0.101 Sum_probs=18.3
Q ss_pred HHHHHHHcCCChhHHHHHHhh
Q psy2123 57 REELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqN 77 (143)
..+||..+|++...|..|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 456999999999999999875
No 205
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=26.88 E-value=45 Score=19.53 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHh
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFq 76 (143)
..+| .....+.--......+||..+|++...|.....
T Consensus 17 ~~IL-~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~ 53 (77)
T 1qgp_A 17 QRIL-KFLEELGEGKATTAHDLSGKLGTPKKEINRVLY 53 (77)
T ss_dssp HHHH-HHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHH-HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3344 445555522223456899999999998776553
No 206
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=26.84 E-value=30 Score=23.85 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 40 NALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 40 ~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
+.-...|....|- ......||...|++...|...|.|+..=
T Consensus 51 ~aA~~lf~e~G~~-~~t~~~IA~~aGvs~~tlY~~F~sK~~L 91 (236)
T 3q0w_A 51 ATAENLLEDRPLA-DISVDDLAKGAGISRPTFYFYFPSKEAV 91 (236)
T ss_dssp HHHHHHHHHSCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHcCcc-cCCHHHHHHHhCCcHHHHHHHCCCHHHH
Confidence 3444446666653 2345678999999999999999998643
No 207
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=26.73 E-value=40 Score=19.70 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=19.6
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 35789999999999999987764
No 208
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=26.43 E-value=39 Score=21.03 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=19.7
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999998764
No 209
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=26.39 E-value=46 Score=23.39 Aligned_cols=51 Identities=6% Similarity=0.145 Sum_probs=34.4
Q ss_pred CCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHH
Q psy2123 31 RTTFNSHQ-LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKF 82 (143)
Q Consensus 31 R~~~~~~q-~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~ 82 (143)
+...+.++ +..-...|....|-. .....||..+|++...+...|.|+..=.
T Consensus 13 ~~~~~r~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~Ll 64 (237)
T 2hxo_A 13 QEPLSRERIVGAAVELLDTVGERG-LTFRALAERLATGPGAIYWHITGKAELL 64 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTTT-CCHHHHHHHHTSCGGGGGGTCCCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHHCCChHHHHHhcCCHHHHH
Confidence 33444443 455566677776543 3456789999999999999999986543
No 210
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=26.36 E-value=22 Score=23.32 Aligned_cols=41 Identities=7% Similarity=0.216 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|-. .....||...|++...+...|.|+..
T Consensus 16 l~aa~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSG-VGLNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHCCccc-CCHHHHHHHhCCChhhHHHHcCCHHH
Confidence 555556677776643 23567899999999999999999865
No 211
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=26.27 E-value=98 Score=21.40 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHH
Q psy2123 37 HQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQ 72 (143)
Q Consensus 37 ~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~ 72 (143)
.-+.+|...=+...|.+.+....+|..|||+...|.
T Consensus 26 ~li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 26 AIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp GHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHH
Confidence 345555555455689999999999999999988764
No 212
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=26.22 E-value=62 Score=21.19 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHcCCCh
Q psy2123 33 TFNSHQLNALEKVFER-------THYPDAFVREELAKKVCLSE 68 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~-------~~~p~~~~~~~La~~lgl~~ 68 (143)
.++.+|+..|..+|.. +.+.+..+...+...+|+..
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 4789999999998852 34788888888778888654
No 213
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=26.01 E-value=39 Score=20.61 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=19.6
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 44 q~elA~~~gis~~~is~iE~G~~ 66 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNSR 66 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999988764
No 214
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=25.95 E-value=1e+02 Score=17.90 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHH
Q psy2123 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWF 75 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WF 75 (143)
...+|.++...|+.+...-+--+...=+.||..+|=+..+|+.=|
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y 52 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKA 52 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHH
Confidence 457999999999999876553333334568888887777776533
No 215
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=25.90 E-value=14 Score=25.60 Aligned_cols=43 Identities=7% Similarity=0.075 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
+++.+..+|...|- ......+||..+|++...|+.+...-+.+
T Consensus 199 L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 199 LDERERLIVYLRYY-----KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ------------------------------------------------
T ss_pred CCHHHHHHHHHHHh-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 44555555555442 23456789999999999999888655444
No 216
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=25.63 E-value=27 Score=23.18 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|- ......||...|++...|...|.++..
T Consensus 15 l~aa~~l~~~~G~~-~~ti~~IA~~agvs~~t~Y~~F~sK~~ 55 (193)
T 2dg8_A 15 LAATLDLIAEEGIA-RVSHRRIAQRAGVPLGSMTYHFTGIEQ 55 (193)
T ss_dssp HHHHHHHHHHHCGG-GCCHHHHHHHHTSCTHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhChh-hccHHHHHHHhCCCchhhheeCCCHHH
Confidence 45555567776663 234567899999999999999999854
No 217
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=25.60 E-value=44 Score=21.95 Aligned_cols=43 Identities=14% Similarity=0.307 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 38 QLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 38 q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
-+..-.+.|....|-. .....||...|++...|...|.++..=
T Consensus 12 Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L 54 (192)
T 2zcm_A 12 IIDNAITLFSEKGYDG-TTLDDISKSVNIKKASLYYHYDNKEEI 54 (192)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHTTCCHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHcCccc-CCHHHHHHHhCCChHHHHHHCCCHHHH
Confidence 3555566677777643 345678999999999999999998653
No 218
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=25.57 E-value=58 Score=21.33 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKF 82 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~ 82 (143)
+......|....|-. .....||...|++...+...|.++..=.
T Consensus 9 l~aA~~lf~~~G~~~-~s~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 9 LEEAAKLFTEKGYEA-TSVQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 444555677776643 2356789999999999999999986643
No 219
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=25.44 E-value=44 Score=21.80 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 40 NALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 40 ~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
......|....|- ......||...|++...+..+|.++-.
T Consensus 21 ~aA~~l~~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~ 60 (191)
T 4aci_A 21 EGARRCFAEHGYE-GATVRRLEEATGKSRGAIFHHFGDKEN 60 (191)
T ss_dssp HHHHHHHHHHHHH-HCCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHhCcc-cCCHHHHHHHHCCCchHHHHHCCCHHH
Confidence 3334445544431 123567899999999999999998754
No 220
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=25.41 E-value=1.4e+02 Score=19.36 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 34 FNSHQLNALEKVFER----THYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~----~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
++..++.+|-..+.. +.+|+.. .||..+|++...|....++--.|
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHHC
Confidence 567777777777653 4567754 68999999999999988765444
No 221
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=25.15 E-value=41 Score=23.55 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=18.5
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 33 ~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 33 QESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp SHHHHHHHTSCHHHHHHHTTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45788889999999999987753
No 222
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=25.14 E-value=37 Score=22.08 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 56 VREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 56 ~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
....||...|++...+...|.|+..
T Consensus 30 t~~~Ia~~agvs~~t~Y~~F~sK~~ 54 (195)
T 3pas_A 30 SVGKIAKAAGLSPATLYIYYEDKEQ 54 (195)
T ss_dssp CHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred CHHHHHHHhCCCchHHHHHcCCHHH
Confidence 3667899999999999999999754
No 223
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=25.13 E-value=40 Score=20.36 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.6
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
...||..+|++...|..|..+++
T Consensus 34 q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCc
Confidence 46789999999999999998754
No 224
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=25.10 E-value=27 Score=21.89 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHcCCChhHHHHHHh
Q psy2123 31 RTTFNSHQLNALEKVFER-----THYPDAFVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~-----~~~p~~~~~~~La~~lgl~~~~V~~WFq 76 (143)
...++.++...|...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 13 ~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 13 PWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp SCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 445677777778777742 4567888888777778888877776664
No 225
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=25.03 E-value=60 Score=21.46 Aligned_cols=41 Identities=10% Similarity=0.215 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|-. .....||...|++...+...|.++-.
T Consensus 18 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~~K~~ 58 (189)
T 3vp5_A 18 YDACLNEFQTHSFHE-AKIMHIVKALDIPRGSFYQYFEDLKD 58 (189)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHCCccc-ccHHHHHHHhCCChHHHHHHCCCHHH
Confidence 445555577777643 35678899999999999999998754
No 226
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=24.91 E-value=40 Score=22.06 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
+......|....|- ......||...|++...+...|.|+..=
T Consensus 14 l~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~L 55 (206)
T 3dew_A 14 MEVATELFAQKGFY-GVSIRELAQAAGASISMISYHFGGKEGL 55 (206)
T ss_dssp HHHHHHHHHHHCGG-GCCHHHHHHHHTCCHHHHHHHSCHHHHH
T ss_pred HHHHHHHHhcCCcc-cCcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 44455557666652 2345678999999999999999998654
No 227
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=24.86 E-value=41 Score=21.13 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45789999999999999998864
No 228
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=24.76 E-value=38 Score=23.31 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
++.....|....|- ......||...|++...+...|.++-.=
T Consensus 19 l~AA~~l~~~~G~~-~~tv~~IA~~agvs~~t~Y~~F~sK~~L 60 (231)
T 2qib_A 19 IGVALDLFSRRSPD-EVSIDEIASAAGISRPLVYHYFPGKLSL 60 (231)
T ss_dssp HHHHHHHHHHSCGG-GCCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCch-hcCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 34445557777662 3346678999999999999999998653
No 229
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=24.71 E-value=37 Score=21.05 Aligned_cols=23 Identities=30% Similarity=0.344 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 37 q~elA~~~gis~~~is~~E~G~~ 59 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVERKRW 59 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998764
No 230
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=24.35 E-value=42 Score=20.58 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=18.8
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45788999999999999987754
No 231
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=24.32 E-value=30 Score=24.08 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
++.....|....|-. .....||...|++...|...|.|+-.
T Consensus 29 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe~ 69 (231)
T 2zcx_A 29 LDAARELGTERGIRE-ITLTDIAATVGMHKSALLRYFETREQ 69 (231)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHH
Confidence 344455577777643 34567899999999999999999854
No 232
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=24.30 E-value=43 Score=20.25 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=18.9
Q ss_pred HHHHHHHcCCChhHHHHHHhh
Q psy2123 57 REELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqN 77 (143)
...||..+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 457899999999999999988
No 233
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=24.22 E-value=65 Score=20.81 Aligned_cols=41 Identities=10% Similarity=0.215 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|-. .....||...|++...+...|.++..
T Consensus 15 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 55 (195)
T 3ppb_A 15 LETALQLFVSQGFHG-TSTATIAREAGVATGTLFHHFPSKEQ 55 (195)
T ss_dssp HHHHHHHHHHTCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 455556677776643 34677899999999999999999865
No 234
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=24.15 E-value=45 Score=22.09 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
++.....|....|- ......||...|++...|...|.++..=
T Consensus 24 l~aa~~l~~~~G~~-~~s~~~Ia~~agvs~~t~Y~~F~sK~~L 65 (212)
T 1pb6_A 24 LSAALDTFSQFGFH-GTRLEQIAELAGVSKTNLLYYFPSKEAL 65 (212)
T ss_dssp HHHHHHHHHHHCTT-TCCHHHHHHHTTSCHHHHHHHSSSHHHH
T ss_pred HHHHHHHHHHcCcc-hhhHHHHHHHHCCChhHHHHhCCCHHHH
Confidence 33444446666653 2346678999999999999999998543
No 235
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=24.06 E-value=40 Score=22.31 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 56 VREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 56 ~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
....||...|++...|...|.|+-.
T Consensus 40 s~~~IA~~aGvs~~tlY~~F~sKe~ 64 (212)
T 3loc_A 40 RLEQIAELAGVSKTNLLYYFPSKEA 64 (212)
T ss_dssp CHHHHHHHHTSCHHHHHHHSSSHHH
T ss_pred CHHHHHHHHCcCHHHHhhhCCCHHH
Confidence 3567899999999999999999743
No 236
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=24.05 E-value=44 Score=22.02 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|- ......||...|++...+...|.++..
T Consensus 18 l~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 58 (202)
T 3lwj_A 18 LTCSLDLFIEKGYY-NTSIRDIIALSEVGTGTFYNYFVDKED 58 (202)
T ss_dssp HHHHHHHHHHHCTT-TCCHHHHHHHHCSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCcc-cCCHHHHHHHhCCCchhHHHHcCCHHH
Confidence 34445557777663 234667899999999999999998754
No 237
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=24.02 E-value=51 Score=19.64 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=19.5
Q ss_pred HHHHHHHcCCChhH----HHHHHhhHH
Q psy2123 57 REELAKKVCLSEAR----VQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~----V~~WFqNrR 79 (143)
..+||..+|++... |..|-.+++
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g~~ 43 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKGKH 43 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCCCC
Confidence 46789999999999 999988754
No 238
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=23.97 E-value=72 Score=21.19 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 40 NALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 40 ~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
......|....|-. .....||...|++...|...|.|+..
T Consensus 24 ~aA~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~ 63 (218)
T 3gzi_A 24 LAARNLFIERPYAQ-VSIREIASLAGTDPGLIRYYFGSKEK 63 (218)
T ss_dssp HHHHHHHHTSCCSC-CCHHHHHHHHTSCTHHHHHHHSSHHH
T ss_pred HHHHHHHHHCCCCc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 34444577777643 24567899999999999999999854
No 239
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=23.88 E-value=48 Score=21.54 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 56 VREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 56 ~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
....||...|++...|...|.|+-.=..-
T Consensus 29 t~~~IA~~agvs~~tlY~~F~sK~~L~~~ 57 (186)
T 2jj7_A 29 SIQEIAKEAKVNVAMASYYFNGKENLYYE 57 (186)
T ss_dssp CHHHHHHHHTSCHHHHHHHHSSHHHHHHH
T ss_pred CHHHHHHHhCCChhhhhhhcCCHHHHHHH
Confidence 35678999999999999999998665443
No 240
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=23.87 E-value=69 Score=20.24 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhh
Q psy2123 35 NSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 35 ~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqN 77 (143)
++.|....+.....-.. .......|+..+|+....+..|++-
T Consensus 2 ~~~~~~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~ 43 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQ 43 (121)
T ss_dssp CHHHHHHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 34454444444332211 1224457999999999999999854
No 241
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=23.79 E-value=46 Score=21.92 Aligned_cols=41 Identities=15% Similarity=0.332 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|-. .....||...|++...|...|.++..
T Consensus 13 l~aA~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 53 (195)
T 2dg7_A 13 KRAALELYSEHGYDN-VTVTDIAERAGLTRRSYFRYFPDKRE 53 (195)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHTTCCHHHHHHHCSSTTG
T ss_pred HHHHHHHHHhcCccc-cCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 455555677776532 34567899999999999999988643
No 242
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=23.76 E-value=9.8 Score=25.20 Aligned_cols=23 Identities=13% Similarity=0.466 Sum_probs=19.6
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
...+|..+|+...+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 46789999999999999997655
No 243
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=23.75 E-value=52 Score=20.42 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=16.7
Q ss_pred HHHHHHHcCCChhHHHHHHh
Q psy2123 57 REELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFq 76 (143)
..++|..+|++...++.|-.
T Consensus 5 i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35689999999999999953
No 244
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=23.72 E-value=46 Score=20.54 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 44 q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999998765
No 245
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=23.61 E-value=41 Score=20.76 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 52 q~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999998765
No 246
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=23.38 E-value=1.4e+02 Score=18.53 Aligned_cols=46 Identities=11% Similarity=0.254 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHHh
Q psy2123 31 RTTFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCL--SEARVQVWFQ 76 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl--~~~~V~~WFq 76 (143)
.+.++..++..|...|. .+.+.+..+...+...+|+ +...|...|.
T Consensus 7 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 56799999999999985 3457888888887777764 4455655554
No 247
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=23.34 E-value=1.3e+02 Score=18.28 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCCC--hhHHHHHH
Q psy2123 34 FNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCLS--EARVQVWF 75 (143)
Q Consensus 34 ~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl~--~~~V~~WF 75 (143)
|+..++..|...|. .+.+.+..+...+...+|+. ...|...|
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMM 49 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 56788888988885 35578888888877777653 34444444
No 248
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=23.32 E-value=1.5e+02 Score=18.74 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCC---ChhHHHHHHhh
Q psy2123 33 TFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCL---SEARVQVWFQN 77 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl---~~~~V~~WFqN 77 (143)
.++..++..|...|. .+.+.+..+...+...+|+ +...|...|.+
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 70 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE 70 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 578889999999985 3557888888888887776 45566666643
No 249
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=23.26 E-value=53 Score=21.94 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
++.-...|....|-. .....||...|++...|..+|.|+-.=
T Consensus 17 l~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~L 58 (210)
T 2xdn_A 17 IEAAERAFYKRGVAR-TTLADIAELAGVTRGAIYWHFNNKAEL 58 (210)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCTTHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHHCCChHHHHHHhCCHHHH
Confidence 334445577777643 335678999999999999999998543
No 250
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=23.21 E-value=55 Score=20.30 Aligned_cols=20 Identities=5% Similarity=-0.016 Sum_probs=16.7
Q ss_pred HHHHHHHcCCChhHHHHHHh
Q psy2123 57 REELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFq 76 (143)
..++|..+|++...++.|=.
T Consensus 4 i~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35689999999999999953
No 251
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=22.93 E-value=69 Score=21.37 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|-. .....||...|++...|...|.++-.
T Consensus 36 l~aA~~l~~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK~~ 76 (222)
T 3bru_A 36 IRAGLEHLTEKGYSS-VGVDEILKAARVPKGSFYHYFRNKAD 76 (222)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCCc-CcHHHHHHHhCCCcchhhhhCCCHHH
Confidence 444455577776643 34667899999999999999999854
No 252
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=22.88 E-value=51 Score=21.47 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|-. .....||...|++...+...|.|+-.
T Consensus 8 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 48 (194)
T 3bqz_B 8 LGVAKELFIKNGYNA-TTTGEIVKLSESSKGNLYYHFKTKEN 48 (194)
T ss_dssp HHHHHHHHHHHTTTT-CCHHHHHHHTTCCHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHcCCcc-CCHHHHHHHhCCCchhHHHhCCCHHH
Confidence 455556676666543 33567899999999999999999854
No 253
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=22.81 E-value=1e+02 Score=24.65 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHH
Q psy2123 30 NRTTFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCL--SEARVQVWF 75 (143)
Q Consensus 30 ~R~~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl--~~~~V~~WF 75 (143)
.+..++.+|+..|.+.|. .+.+.+..+...+...+|+ +...|+.-|
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf 344 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 344 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 366799999999999994 4567889998888888875 445565555
No 254
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=22.77 E-value=1.1e+02 Score=17.26 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcC--CChhHHHHHHh
Q psy2123 35 NSHQLNALEKVFE-----RTHYPDAFVREELAKKVC--LSEARVQVWFQ 76 (143)
Q Consensus 35 ~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lg--l~~~~V~~WFq 76 (143)
...+...|...|. .+.+.+..+...+...+| ++...|...|.
T Consensus 4 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 52 (92)
T 2kn2_A 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIK 52 (92)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445556666663 234677777777777777 45556666553
No 255
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=22.67 E-value=51 Score=15.52 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=10.0
Q ss_pred hhHHHHHHHhhhhh
Q psy2123 76 QNRRAKFRRNERNF 89 (143)
Q Consensus 76 qNrR~k~rk~~~~~ 89 (143)
.|||.+|+..+...
T Consensus 7 RnRRRRWR~Rq~qi 20 (26)
T 1etf_B 7 RNRRRRWRERQRAA 20 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 58888888766543
No 256
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=22.53 E-value=59 Score=22.24 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 40 NALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 40 ~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+.....|....|-. .....||...|++...|...|.++-.
T Consensus 50 ~aA~~l~~~~G~~~-~tv~~IA~~AGvs~~t~Y~~F~sKe~ 89 (229)
T 3bni_A 50 DACADLLDEVGYDA-LSTRAVALRADVPIGSVYRFFGNKRQ 89 (229)
T ss_dssp HHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHhcChhh-ccHHHHHHHHCCCchhHHHHcCCHHH
Confidence 33444466666543 34567899999999999999999754
No 257
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=22.48 E-value=97 Score=20.59 Aligned_cols=44 Identities=16% Similarity=0.276 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
++..+..+|.-.... + ...+||..++++.+.|++...+-+.|..
T Consensus 143 Lt~rE~~vl~~l~~g--~----s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 143 LTGREQQVLQLTIRG--L----MNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp SCHHHHHHHHHHTTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHcC--C----cHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 556666666544321 1 2356888999999999987777666643
No 258
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.32 E-value=46 Score=22.28 Aligned_cols=42 Identities=24% Similarity=0.183 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
++.-...|....|-. .....||...|++...|...|.|+..=
T Consensus 15 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~gtlY~~F~sKe~L 56 (203)
T 2np5_A 15 AAALFDVAAESGLEG-ASVREVAKRAGVSIGAVQHHFSTKDEM 56 (203)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 445555677776642 345678999999999999999998643
No 259
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=22.26 E-value=49 Score=22.03 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|-. .....||...|++...+...|.|+..
T Consensus 17 l~aA~~lf~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 57 (216)
T 3f0c_A 17 INAAQKRFAHYGLCK-TTMNEIASDVGMGKASLYYYFPDKET 57 (216)
T ss_dssp HHHHHHHHHHHCSSS-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCCc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 455555677777643 23567899999999999999999854
No 260
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=22.25 E-value=83 Score=21.38 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHcCCChhHHHHHHhh
Q psy2123 33 TFNSHQLNALEKVFERTHYPD----AFVREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~----~~~~~~La~~lgl~~~~V~~WFqN 77 (143)
.|+.++.......-...-.|. .....++|..+|++...+..|-..
T Consensus 23 ~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 377777665432211110111 124678999999999999999874
No 261
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=22.12 E-value=50 Score=20.44 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHH
Q psy2123 41 ALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 41 ~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR 79 (143)
.|...|....-.+ ..+||..+|++...|..|..+++
T Consensus 17 ~Lk~~lr~~~glt---q~eLA~~lGis~~~is~ie~G~~ 52 (104)
T 3trb_A 17 ILAEELGFLDKMS---ANQLAKHLAIPTNRVTAILNGAR 52 (104)
T ss_dssp HHHHHHHHTTSCC---HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCC---HHHHHHHHCcCHHHHHHHHcCCC
Confidence 3333333344444 45789999999999999987765
No 262
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=22.10 E-value=70 Score=21.14 Aligned_cols=41 Identities=22% Similarity=0.428 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+..-...|....|-. .....||...|++...+...|.|+-.
T Consensus 18 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe~ 58 (197)
T 2hyt_A 18 LATARKVFSERGYAD-TSMDDLTAQASLTRGALYHHFGDKKG 58 (197)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCTTHHHHHHSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 444455577777643 33567899999999999999998754
No 263
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.03 E-value=56 Score=21.86 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
+..-...|....|-. .....||...|++...|..+|.++-.=
T Consensus 14 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tiY~~F~sKe~L 55 (202)
T 2d6y_A 14 FEAAVAEFARHGIAG-ARIDRIAAEARANKQLIYAYYGNKGEL 55 (202)
T ss_dssp HHHHHHHHHHHTTTS-CCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 445555677777633 335678999999999999999998653
No 264
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=21.91 E-value=61 Score=21.60 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
++.-...|....|-. .....||...|++...|...|.|+..=
T Consensus 16 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~t~Y~~F~sKe~L 57 (210)
T 3vib_A 16 MLAALETFYRKGIAR-TSLNEIAQAAGVTRDALYWHFKNKEDL 57 (210)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHHCcCHHHHHHHCCCHHHH
Confidence 334445577777643 235678999999999999999998653
No 265
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=21.89 E-value=47 Score=21.97 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+..-...|....|-. .....||...|++...+...|.|+-.
T Consensus 14 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~ 54 (199)
T 2o7t_A 14 ITTTCNLYRTHHHDS-LTMENIAEQAGVGVATLYRNFPDRFT 54 (199)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHCCCcc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 344445566666532 34567899999999999999998754
No 266
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=21.74 E-value=49 Score=21.79 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
+......|....|-. .....||...|++...|..+|.++-.=
T Consensus 10 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L 51 (185)
T 2yve_A 10 LRTAIDYIGEYSLET-LSYDSLAEATGLSKSGLIYHFPSRHAL 51 (185)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHCCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcChhh-ccHHHHHHHhCCChHHHHHhCcCHHHH
Confidence 445555677777642 346678999999999999999997543
No 267
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=21.71 E-value=52 Score=22.12 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 56 VREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 56 ~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
...+||..+|++...|..|....+.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~~~ 46 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRGAI 46 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHhCCCC
Confidence 4678999999999999999987654
No 268
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=21.70 E-value=1.7e+02 Score=23.30 Aligned_cols=49 Identities=10% Similarity=0.050 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
++..+..+|...|-.... ......+||..+|++...|+.....-+.|.|
T Consensus 376 L~ereR~VI~LRygL~~~-e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 376 LSEREAMVLKLRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred CCHHHHHHHHHHHhccCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 555666666666642110 1234678999999999999999887777776
No 269
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=21.60 E-value=74 Score=21.26 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
++.-...|....|-. .....||...|++...|...|.|+..=...
T Consensus 17 l~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~L~~a 61 (210)
T 2wui_A 17 LDAAERVFLEKGVGT-TAMADLADAAGVSRGAVYGHYKNKIEVCLA 61 (210)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 334445577777643 235678999999999999999998765443
No 270
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=21.39 E-value=1.6e+02 Score=18.31 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHH
Q psy2123 30 NRTTFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCL--SEARVQVWF 75 (143)
Q Consensus 30 ~R~~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl--~~~~V~~WF 75 (143)
....++..++..|...|. .+.+.+..+...+...+|+ +...+...|
T Consensus 13 ~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 65 (161)
T 3fwb_A 13 LNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65 (161)
T ss_dssp TTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456789999999999995 3457888888888777764 445555555
No 271
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=21.38 E-value=50 Score=21.38 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|-. .....||...|++...|...|.|+..
T Consensus 16 l~aa~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~ 56 (191)
T 3on4_A 16 LAVAEALIQKDGYNA-FSFKDIATAINIKTASIHYHFPSKED 56 (191)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCcchhhhcCCCHHH
Confidence 444455566665432 34567899999999999999999854
No 272
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.26 E-value=52 Score=22.22 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 40 NALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 40 ~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+.-...|....|-. .....||...|++...|...|.|+..
T Consensus 16 ~aA~~lf~~~G~~~-~s~~~IA~~aGvs~gtlY~yF~sKe~ 55 (209)
T 2gfn_A 16 DAVLALIAREGISA-VTTRAVAEESGWSTGVLNHYFGSRHE 55 (209)
T ss_dssp HHHHHHHHHHCGGG-CCHHHHHHHHSSCHHHHHHHTSSHHH
T ss_pred HHHHHHHHHhCccc-CCHHHHHHHHCCCcchHHhcCCCHHH
Confidence 33344577766643 34667899999999999999999754
No 273
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=21.13 E-value=57 Score=21.24 Aligned_cols=44 Identities=14% Similarity=0.324 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 37 HQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 37 ~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
.-+......|....|-. .....||...|++...+...|.|+..=
T Consensus 15 ~il~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L 58 (196)
T 3he0_A 15 QILAAAEQLIAESGFQG-LSMQKLANEAGVAAGTIYRYFSDKEHL 58 (196)
T ss_dssp HHHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHhCccc-CCHHHHHHHhCCCcchHHHhcCCHHHH
Confidence 34556666677777643 346678999999999999999998653
No 274
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=21.02 E-value=82 Score=20.20 Aligned_cols=41 Identities=17% Similarity=0.391 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|-. .....||...|++...+...|.|+-.
T Consensus 14 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 54 (188)
T 3qkx_A 14 FSATDRLMAREGLNQ-LSMLKLAKEANVAAGTIYLYFKNKDE 54 (188)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHTCCHHHHHHHSSSHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCCcchHHHHcCCHHH
Confidence 445555577776643 34667899999999999999999854
No 275
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=21.01 E-value=1.3e+02 Score=17.45 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=33.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHc-CCChhHHHHHHh
Q psy2123 29 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKV-CLSEARVQVWFQ 76 (143)
Q Consensus 29 r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~l-gl~~~~V~~WFq 76 (143)
..+..+|.++...|+.+...-..-....=..||..+ |=+..+|+.=|+
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHH
Confidence 445679999999999988765543444456678777 567777765444
No 276
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=20.99 E-value=51 Score=21.11 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 40 NALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 40 ~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
......|....|- ......||...|++...+...|.++..=
T Consensus 11 ~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~L 51 (170)
T 3egq_A 11 EAALRLYMKKPPH-EVSIEEIAREAKVSKSLIFYHFESKQKL 51 (170)
T ss_dssp HHHHHHHTTSCGG-GCCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHhcCCc-cCcHHHHHHHhCCCchhHHHHcCCHHHH
Confidence 3444456666552 2346678999999999999999997643
No 277
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=20.81 E-value=61 Score=21.68 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
++.....|....|-. .....||...|++...|...|.|+-.=..-
T Consensus 21 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~sKe~L~~~ 65 (221)
T 3c2b_A 21 LDQALRLLVEGGEKA-LTTSGLARAANCSKESLYKWFGDRDGLLAA 65 (221)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHHHHHH
Confidence 344455576666532 345678999999999999999997665443
No 278
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=20.67 E-value=1.6e+02 Score=23.10 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
+++.+..+|...|-.... ......+||..+|++...|+.....-+.|.|
T Consensus 361 L~~rer~Vl~lr~~L~~~-e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 361 LSEREAMVLKLRKGLIDG-REHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SCHHHHHHHHHHHHTTCC------CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 555666666666642111 1245678999999999999999987777777
No 279
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.65 E-value=59 Score=21.87 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 56 VREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 56 ~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
....||...|++...|...|.++..=
T Consensus 25 s~~~IA~~AGvskgtlY~hF~sKe~L 50 (208)
T 2g3b_A 25 RVNDVAEVAGVSPGLLYYHFKDRIGL 50 (208)
T ss_dssp CHHHHHHHHTSCHHHHHHHHCSHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 36678999999999999999998653
No 280
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=20.41 E-value=53 Score=21.81 Aligned_cols=41 Identities=20% Similarity=0.402 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|-. .....||...|++...+...|.++-.
T Consensus 20 l~aA~~lf~~~G~~~-~s~~~Ia~~agvs~~t~Y~yF~sKe~ 60 (203)
T 3ccy_A 20 IERAAAMFARQGYSE-TSIGDIARACECSKSRLYHYFDSKEA 60 (203)
T ss_dssp HHHHHHHHHHTCTTT-SCHHHHHHHTTCCGGGGTTTCSCHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcCeeeeeeCCHHH
Confidence 445556687777643 34667899999999999999998754
No 281
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=20.28 E-value=52 Score=22.13 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 38 QLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 38 q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
-++.-...|....|-. .....||...|++...|...|.|+..
T Consensus 16 Il~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~ 57 (219)
T 2w53_A 16 ILDAAEACFHEHGVAR-TTLEMIGARAGYTRGAVYWHFKNKSE 57 (219)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCchHHhhcCCCHHH
Confidence 3555566687777643 34667899999999999999999854
No 282
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=20.27 E-value=64 Score=22.01 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 38 QLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 38 q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
-++.....|....|-. .....||...|++...|...|.++-.
T Consensus 35 Il~aA~~lf~~~G~~~-~t~~~IA~~Agvs~~t~Y~~F~sKe~ 76 (230)
T 2iai_A 35 LLSVAVQVFIERGYDG-TSMEHLSKAAGISKSSIYHHVTGKEE 76 (230)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHHcCccc-cCHHHHHHHHCCChhHHHHhCCCHHH
Confidence 3566667777777643 34567899999999999999998754
No 283
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.24 E-value=52 Score=22.08 Aligned_cols=41 Identities=17% Similarity=0.395 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+......|....|-. .....||...|++...|...|.|+-.
T Consensus 14 l~aA~~lf~~~Gy~~-~s~~~IA~~AGvs~gt~Y~yF~sKe~ 54 (206)
T 1vi0_A 14 IDAAVEVIAENGYHQ-SQVSKIAKQAGVADGTIYLYFKNKED 54 (206)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 445555577766532 23567899999999999999999854
No 284
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=20.22 E-value=54 Score=21.71 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 41 ALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 41 ~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
.-...|....|-.. ....||...|++...|...|.|+..
T Consensus 18 aA~~lf~~~G~~~~-s~~~IA~~aGvs~gtlY~yF~sKe~ 56 (194)
T 2nx4_A 18 AAWRLIAARGIEAA-NMRDIATEAGYTNGALSHYFAGKDE 56 (194)
T ss_dssp HHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHhcCcccC-CHHHHHHHhCCCcchHHHhCcCHHH
Confidence 33445777776532 3567899999999999999999854
No 285
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=20.20 E-value=55 Score=21.15 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
++.....|....|-. .....||...|++...+...|.++-.
T Consensus 14 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 54 (194)
T 2g7s_A 14 LQCARTLIIRGGYNS-FSYADISQVVGIRNASIHHHFPSKSD 54 (194)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHCCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCchHHHHHcCCHHH
Confidence 334444566666532 34667899999999999999999754
No 286
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=20.13 E-value=54 Score=22.12 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=26.7
Q ss_pred HHHHHHHH---HHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 38 QLNALEKV---FERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 38 q~~~L~~~---f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
...+|+.. |....|-. .....||...|++...|...|.|+..
T Consensus 26 r~~Il~aA~~lf~e~G~~~-~s~~~IA~~aGvskgtlY~yF~sKe~ 70 (214)
T 2oer_A 26 VASILEAAVQVLASEGAQR-FTTARVAERAGVSIGSLYQYFPNKAA 70 (214)
T ss_dssp HHHHHHHHHHC------CC-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHhhCccc-ccHHHHHHHhCCCCchHHHhCCCHHH
Confidence 34455555 55555532 34667899999999999999999854
No 287
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=20.10 E-value=57 Score=18.58 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=19.6
Q ss_pred HHHHHHHcCCChhHHHHHHhhH
Q psy2123 57 REELAKKVCLSEARVQVWFQNR 78 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNr 78 (143)
...||..+|++...|..++.++
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~ 33 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNP 33 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 5678999999999999999876
Done!