Query psy2123
Match_columns 143
No_of_seqs 161 out of 1457
Neff 8.2
Searched_HMMs 13730
Date Fri Aug 16 16:39:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2123.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2123hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b72a_ a.4.1.1 (A:) Homeobox 99.9 1E-24 7.6E-29 138.9 8.3 85 2-87 3-87 (88)
2 d2craa1 a.4.1.1 (A:7-64) Homeo 99.9 1.4E-23 1E-27 123.8 6.7 57 28-84 2-58 (58)
3 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 99.9 4E-23 2.9E-27 122.0 8.3 57 28-84 1-57 (58)
4 d1zq3p1 a.4.1.1 (P:2-68) Homeo 99.9 5.3E-23 3.9E-27 124.8 8.5 62 27-88 1-62 (67)
5 d1pufa_ a.4.1.1 (A:) Homeobox 99.9 1.1E-22 7.9E-27 126.4 9.8 65 24-88 10-74 (77)
6 d2e1oa1 a.4.1.1 (A:8-64) Homeo 99.9 7.1E-23 5.2E-27 120.5 8.3 57 28-84 1-57 (57)
7 d1fjla_ a.4.1.1 (A:) Paired pr 99.9 1.1E-22 8.3E-27 122.6 8.9 63 26-88 1-63 (65)
8 d1jgga_ a.4.1.1 (A:) Even-skip 99.9 8.7E-23 6.4E-27 120.1 7.9 56 29-84 1-56 (57)
9 d9anta_ a.4.1.1 (A:) Antennape 99.9 6.8E-23 4.9E-27 119.8 7.3 55 31-85 1-55 (56)
10 d1vnda_ a.4.1.1 (A:) VND/NK-2 99.9 2.3E-23 1.7E-27 129.6 4.7 66 22-87 4-69 (77)
11 d1p7ia_ a.4.1.1 (A:) Engrailed 99.9 1.7E-22 1.2E-26 117.3 6.8 53 29-81 1-53 (53)
12 d1ftta_ a.4.1.1 (A:) Thyroid t 99.9 3.4E-22 2.5E-26 121.5 8.3 62 27-88 2-63 (68)
13 d2cuea1 a.4.1.1 (A:7-74) Paire 99.9 5.7E-22 4.2E-26 120.5 8.4 62 28-89 2-63 (68)
14 d1uhsa_ a.4.1.1 (A:) Homeodoma 99.9 1.1E-21 7.9E-26 120.3 8.6 60 28-87 2-62 (72)
15 d1yz8p1 a.4.1.1 (P:1-60) Pitui 99.9 2.9E-22 2.1E-26 119.1 5.5 58 28-85 2-59 (60)
16 d1bw5a_ a.4.1.1 (A:) Insulin g 99.8 1.1E-21 8E-26 118.6 6.4 62 26-87 2-63 (66)
17 d1au7a1 a.4.1.1 (A:103-160) Pi 99.8 2E-21 1.5E-25 114.5 6.6 57 29-85 1-57 (58)
18 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 99.8 1.4E-21 1E-25 118.3 5.7 60 26-85 7-66 (67)
19 d2cufa1 a.4.1.1 (A:8-89) Homeo 99.8 4.4E-21 3.2E-25 120.6 8.1 61 28-88 1-76 (82)
20 d1le8a_ a.4.1.1 (A:) Mating ty 99.8 3.2E-21 2.3E-25 111.7 6.3 53 31-83 1-53 (53)
21 d1wi3a_ a.4.1.1 (A:) DNA-bindi 99.8 7.6E-21 5.5E-25 116.5 7.2 59 26-84 6-65 (71)
22 d1e3oc1 a.4.1.1 (C:104-160) Oc 99.8 9.1E-21 6.6E-25 111.3 7.0 56 30-85 1-56 (57)
23 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 99.8 4.8E-20 3.5E-24 115.3 6.1 61 24-84 14-78 (80)
24 d2ecba1 a.4.1.1 (A:8-83) Zinc 99.8 2.1E-19 1.5E-23 111.4 8.8 55 33-87 10-64 (76)
25 d2ecca1 a.4.1.1 (A:1-76) Homeo 99.8 4.8E-19 3.5E-23 109.7 9.2 57 30-86 6-62 (76)
26 d1s7ea1 a.4.1.1 (A:103-152) He 99.8 5.4E-20 3.9E-24 105.3 4.5 50 30-79 1-50 (50)
27 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 99.8 8.4E-19 6.1E-23 107.8 8.5 60 28-87 2-64 (73)
28 d1lfba_ a.4.1.1 (A:) Hepatocyt 99.7 4.4E-19 3.2E-23 110.1 4.6 56 31-86 1-77 (78)
29 d1x2ma1 a.4.1.1 (A:8-59) Lag1 99.7 5E-19 3.6E-23 101.8 4.3 50 35-84 1-51 (52)
30 d2cqxa1 a.4.1.1 (A:8-66) LAG1 99.7 2E-18 1.4E-22 101.8 4.6 55 29-83 3-58 (59)
31 d1k61a_ a.4.1.1 (A:) mat alpha 99.7 2.2E-17 1.6E-21 97.6 7.6 52 33-84 4-58 (60)
32 d1x2na1 a.4.1.1 (A:6-67) Homeo 99.7 4.4E-17 3.2E-21 96.8 8.3 56 28-83 3-61 (62)
33 d1hlva1 a.4.1.7 (A:1-66) DNA-b 93.9 0.16 1.2E-05 28.7 6.8 49 31-82 5-53 (66)
34 d1ijwc_ a.4.1.2 (C:) HIN recom 88.4 0.86 6.2E-05 23.7 5.4 40 32-76 4-43 (47)
35 d1or7a1 a.4.13.2 (A:120-187) S 87.5 0.93 6.8E-05 24.9 5.7 47 34-85 19-65 (68)
36 d1rp3a2 a.4.13.2 (A:164-234) S 86.0 1.3 9.6E-05 24.2 5.8 47 34-85 22-68 (71)
37 d1iufa1 a.4.1.7 (A:-2-75) Ars- 77.2 2.2 0.00016 24.4 4.4 29 28-56 6-35 (78)
38 d2jn6a1 a.4.1.19 (A:1-89) Unch 72.5 4.5 0.00033 23.2 5.2 43 31-76 3-45 (89)
39 d1j9ia_ a.6.1.5 (A:) Terminase 71.1 1.5 0.00011 24.6 2.6 19 57-75 5-23 (68)
40 d2pq3a1 a.39.1.5 (A:3-75) Calm 68.5 2.5 0.00018 23.2 3.3 43 34-76 2-51 (73)
41 d1fsea_ a.4.6.2 (A:) Germinati 67.7 6.9 0.0005 21.0 5.7 46 31-82 2-47 (67)
42 d1f54a_ a.39.1.5 (A:) Calmodul 66.9 5.3 0.00039 21.9 4.6 45 32-76 2-53 (77)
43 d1avsa_ a.39.1.5 (A:) Troponin 61.5 3.9 0.00029 22.9 3.2 46 31-76 5-57 (81)
44 d2hkua1 a.4.1.9 (A:18-87) Puta 61.5 3.8 0.00028 22.4 3.1 41 39-81 7-47 (70)
45 d2auwa1 a.35.1.10 (A:88-154) H 60.5 5.5 0.0004 21.9 3.6 24 57-80 17-40 (67)
46 d1c07a_ a.39.1.6 (A:) Eps15 {H 60.3 6.6 0.00048 22.6 4.2 44 33-76 3-51 (95)
47 d1ku3a_ a.4.13.2 (A:) Sigma70 57.4 7.2 0.00052 20.9 3.7 40 33-73 8-47 (61)
48 d2ppxa1 a.35.1.3 (A:30-91) Unc 56.9 3.8 0.00028 21.9 2.4 23 57-79 15-37 (62)
49 d1fi6a_ a.39.1.6 (A:) Reps1 {M 55.9 9.4 0.00068 21.7 4.4 43 33-75 2-49 (92)
50 d1bl0a1 a.4.1.8 (A:9-62) MarA 53.6 5.2 0.00038 20.5 2.6 25 53-77 18-42 (54)
51 d2cpra1 a.60.8.4 (A:483-595) E 53.0 16 0.0011 21.7 5.3 32 30-69 16-47 (113)
52 d1l3la1 a.4.6.2 (A:170-234) Qu 51.4 15 0.0011 19.5 5.2 46 32-83 3-48 (65)
53 d2g3ba1 a.4.1.9 (A:2-73) Putat 49.0 5.7 0.00041 21.6 2.4 26 56-81 24-49 (72)
54 d1s7oa_ a.4.13.3 (A:) Hypothet 47.9 24 0.0017 20.9 6.1 46 34-84 17-62 (106)
55 d2vkva1 a.4.1.9 (A:6-67) Tetra 47.2 5.3 0.00038 21.1 2.0 25 57-81 22-46 (62)
56 d2fq4a1 a.4.1.9 (A:9-77) Trans 46.8 5.5 0.0004 21.5 2.1 44 39-83 10-53 (69)
57 d1ui5a1 a.4.1.9 (A:5-75) A-fac 46.3 5.7 0.00041 21.5 2.1 40 40-80 12-51 (71)
58 d1jt6a1 a.4.1.9 (A:2-72) Multi 45.3 7.8 0.00057 20.9 2.6 38 42-80 10-47 (71)
59 d1rp3a1 a.4.13.1 (A:87-163) Si 45.1 20 0.0015 19.5 4.5 28 49-79 24-51 (77)
60 d2croa_ a.35.1.2 (A:) cro 434 44.2 6.3 0.00046 20.9 2.0 23 57-79 19-41 (65)
61 d1y9qa1 a.35.1.8 (A:4-82) Prob 43.7 6.2 0.00045 21.8 2.0 23 57-79 24-46 (79)
62 d2ezla_ a.4.1.2 (A:) Ibeta sub 43.4 16 0.0011 21.6 3.9 30 47-76 46-75 (99)
63 d2gena1 a.4.1.9 (A:6-75) Proba 42.6 7.7 0.00056 20.7 2.3 40 40-80 7-46 (70)
64 d2g7la1 a.4.1.9 (A:16-83) Puta 42.3 7.6 0.00055 20.8 2.2 45 39-84 10-54 (68)
65 d1wrka1 a.39.1.5 (A:4-85) Trop 42.2 24 0.0018 19.4 5.8 43 34-76 9-59 (82)
66 d2i10a1 a.4.1.9 (A:10-78) Puta 41.5 9 0.00066 20.5 2.5 38 43-81 10-47 (69)
67 d2np5a1 a.4.1.9 (A:9-77) Trans 41.3 7.6 0.00055 20.7 2.1 40 40-80 8-47 (69)
68 d1t56a1 a.4.1.9 (A:22-94) Ethr 40.9 7.7 0.00056 20.9 2.1 39 41-80 11-49 (73)
69 d1r69a_ a.35.1.2 (A:) 434 C1 r 40.3 9.2 0.00067 20.0 2.3 22 57-78 17-38 (63)
70 d2a6ca1 a.35.1.13 (A:1-69) HTH 39.7 9.2 0.00067 20.6 2.3 22 57-78 22-43 (69)
71 d1utxa_ a.35.1.3 (A:) Putative 39.5 8.3 0.0006 20.5 2.0 23 57-79 17-39 (66)
72 d1yioa1 a.4.6.2 (A:131-200) Re 39.1 26 0.0019 18.8 5.2 42 34-81 13-54 (70)
73 d2r1jl1 a.35.1.2 (L:3-68) P22 38.9 8.7 0.00063 20.3 2.1 23 57-79 19-41 (66)
74 d1z0xa1 a.4.1.9 (A:4-71) Trans 38.8 7.2 0.00052 20.9 1.7 37 45-81 14-50 (68)
75 d1b0na2 a.35.1.3 (A:1-68) SinR 38.4 8.9 0.00065 20.4 2.1 23 57-79 17-39 (68)
76 d2gfna1 a.4.1.9 (A:4-80) Proba 38.3 9.3 0.00068 20.8 2.2 37 43-80 16-52 (77)
77 d1y7ya1 a.35.1.3 (A:5-73) Rest 38.2 9.1 0.00066 20.5 2.1 23 57-79 25-47 (69)
78 d1a04a1 a.4.6.2 (A:150-216) Ni 38.1 26 0.0019 18.5 5.7 44 33-82 6-49 (67)
79 d1j5ya1 a.4.5.1 (A:3-67) Putat 38.0 26 0.0019 18.4 4.4 36 38-76 9-44 (65)
80 d1xsva_ a.4.13.3 (A:) Hypothet 37.8 36 0.0026 20.0 5.5 46 34-84 19-64 (106)
81 d2p7vb1 a.4.13.2 (B:546-613) S 37.4 17 0.0013 19.7 3.2 40 33-73 5-44 (68)
82 d2o7ta1 a.4.1.9 (A:1-78) Trans 36.9 9.6 0.0007 20.9 2.1 40 40-80 14-53 (78)
83 d1dpua_ a.4.5.16 (A:) C-termin 36.8 18 0.0013 19.8 3.2 39 34-73 4-43 (69)
84 d1pb6a1 a.4.1.9 (A:14-85) Hypo 36.3 10 0.00076 20.4 2.2 39 41-80 12-50 (72)
85 d2opoa1 a.39.1.10 (A:6-86) Pol 35.8 26 0.0019 19.1 4.0 39 35-73 1-45 (81)
86 d2fbqa1 a.4.1.9 (A:2-80) Trans 35.7 11 0.00078 20.6 2.2 40 41-81 12-51 (79)
87 d1p4wa_ a.4.6.2 (A:) Transcrip 35.5 34 0.0025 19.1 7.2 46 32-83 21-66 (87)
88 d2icta1 a.35.1.3 (A:8-94) Anti 35.1 11 0.00083 21.3 2.3 24 57-80 17-40 (87)
89 d1rkta1 a.4.1.9 (A:2-82) Hypot 34.7 8 0.00058 21.4 1.5 39 41-80 19-57 (81)
90 d1v7ba1 a.4.1.9 (A:1-74) Trans 34.5 11 0.0008 20.3 2.1 42 39-81 10-51 (74)
91 d2id6a1 a.4.1.9 (A:1-75) Trans 34.2 14 0.00099 20.0 2.5 25 56-80 25-49 (75)
92 d1ttya_ a.4.13.2 (A:) Sigma70 33.7 18 0.0013 20.7 3.0 40 33-73 18-57 (87)
93 d1wdcb_ a.39.1.5 (B:) Myosin E 33.3 39 0.0028 20.0 4.9 43 34-76 1-50 (142)
94 d2d6ya1 a.4.1.9 (A:7-74) Putat 33.3 15 0.0011 19.5 2.5 39 41-80 10-48 (68)
95 d2fx0a1 a.4.1.9 (A:4-76) Hemol 33.2 15 0.0011 19.8 2.6 45 39-84 10-54 (73)
96 d2b5aa1 a.35.1.3 (A:1-77) Regu 32.9 12 0.00089 20.3 2.1 22 57-78 26-47 (77)
97 d3c07a1 a.4.1.9 (A:15-89) Puta 32.7 12 0.00088 20.1 2.0 40 40-80 12-51 (75)
98 d2hyja1 a.4.1.9 (A:8-82) Putat 32.5 9.6 0.0007 20.7 1.5 25 56-80 27-51 (75)
99 d1t33a1 a.4.1.9 (A:1-88) Putat 32.1 12 0.00091 20.9 2.1 36 43-80 22-57 (88)
100 d2p8ta1 a.4.5.72 (A:14-82) Hyp 31.6 16 0.0011 20.2 2.3 31 40-73 6-36 (69)
101 d2jxca1 a.39.1.6 (A:121-215) E 29.7 28 0.0021 19.7 3.5 41 33-73 3-47 (95)
102 d2fd5a1 a.4.1.9 (A:1-76) Proba 29.2 10 0.00073 20.6 1.2 41 39-80 13-53 (76)
103 d1ctda_ a.39.1.5 (A:) Troponin 28.9 20 0.0015 16.6 2.1 28 36-63 3-32 (34)
104 d2mysb_ a.39.1.5 (B:) Myosin E 27.9 43 0.0032 19.8 4.4 34 34-67 1-39 (145)
105 d1r8da_ a.6.1.3 (A:) Multidrug 27.6 19 0.0014 20.9 2.4 20 57-76 5-24 (109)
106 d2g7ga1 a.4.1.9 (A:9-73) Putat 27.5 17 0.0012 19.2 2.0 28 56-83 21-48 (65)
107 d1r8ea1 a.6.1.3 (A:3-120) Tran 26.9 20 0.0014 21.1 2.4 20 57-76 6-25 (118)
108 d1vi0a1 a.4.1.9 (A:6-77) Hypot 26.6 18 0.0013 19.2 2.0 39 41-80 9-47 (72)
109 d1k78a1 a.4.1.5 (A:19-81) Pax- 26.6 35 0.0025 18.2 3.2 41 34-79 15-55 (63)
110 d1exra_ a.39.1.5 (A:) Calmodul 26.5 58 0.0042 19.0 5.0 43 33-75 2-51 (146)
111 d1tuza_ a.39.1.7 (A:) Diacylgl 26.5 11 0.00081 22.7 1.2 28 50-77 6-33 (118)
112 d1zk8a1 a.4.1.9 (A:6-77) Trans 26.0 11 0.0008 20.2 1.0 41 39-80 9-49 (72)
113 d1biaa1 a.4.5.1 (A:1-63) Bioti 25.8 32 0.0023 18.0 3.0 37 37-77 6-42 (63)
114 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 25.0 47 0.0034 17.4 5.2 43 33-75 3-45 (59)
115 d2id3a1 a.4.1.9 (A:13-80) Puta 24.5 26 0.0019 18.4 2.5 41 40-81 13-53 (68)
116 d2iu5a1 a.4.1.9 (A:1-71) Trans 24.4 13 0.00096 19.9 1.1 41 39-80 12-52 (71)
117 d2fug21 c.47.1.21 (2:3-180) NA 24.3 53 0.0039 21.1 4.4 35 38-72 25-59 (178)
118 d2hbka1 a.60.8.4 (A:421-516) E 24.1 59 0.0043 18.2 4.5 32 30-69 10-41 (96)
119 d2g7sa1 a.4.1.9 (A:3-76) Putat 24.1 26 0.0019 18.7 2.4 38 43-81 14-51 (74)
120 d1pdnc_ a.4.1.5 (C:) Paired pr 24.0 34 0.0025 20.5 3.2 41 34-79 17-57 (123)
121 d1bjfa_ a.39.1.5 (A:) Neurocal 22.0 51 0.0037 20.1 4.0 27 51-77 3-29 (181)
122 d1q06a_ a.6.1.3 (A:) Transcrip 21.5 29 0.0021 20.7 2.4 20 57-76 3-22 (127)
123 d1l0oc_ a.4.13.2 (C:) SigmaF { 21.2 26 0.0019 18.0 1.9 24 49-75 29-52 (57)
124 d1aiha_ d.163.1.1 (A:) Integra 20.6 87 0.0063 18.9 5.2 40 32-71 5-44 (170)
125 d1wdcc_ a.39.1.5 (C:) Myosin R 20.6 40 0.0029 20.2 3.1 35 34-68 1-42 (152)
126 d2gqba1 a.282.1.1 (A:1-130) Hy 20.4 73 0.0053 19.4 4.2 30 51-80 80-114 (130)
127 d1lmb3_ a.35.1.2 (3:) lambda C 20.2 28 0.002 19.4 2.1 23 57-79 28-50 (87)
128 d1g8ia_ a.39.1.5 (A:) Frequeni 20.1 50 0.0036 20.4 3.6 28 50-77 3-30 (187)
No 1
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.91 E-value=1e-24 Score=138.92 Aligned_cols=85 Identities=36% Similarity=0.558 Sum_probs=61.7
Q ss_pred CcccccccccCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 2 EYDWMLTLRCDGEDDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 2 ~~~w~~~~~~~~~~~~~~~~~~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
-|+||...+....... .......++++.|+.|++.|+.+|+..|..++||+..++++||..|||++++|+|||||||+|
T Consensus 3 ~y~wm~~~r~~p~~~~-~~~~~~~~~kr~Rt~ft~~Ql~~Le~~F~~n~yPs~~~r~~LA~~l~l~~~~V~vWFqNrR~k 81 (88)
T d1b72a_ 3 TFDWMKVKRNPPKTAK-VSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMK 81 (88)
T ss_dssp CCGGGGC---------------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCCCCC-CCCCCCCCCCCCCcCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCHHHeeeccHhHHHH
Confidence 4999976553222111 112222345678999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q psy2123 82 FRRNER 87 (143)
Q Consensus 82 ~rk~~~ 87 (143)
+||..+
T Consensus 82 ~Kk~~~ 87 (88)
T d1b72a_ 82 QKKRER 87 (88)
T ss_dssp HHHHHT
T ss_pred HHHhcc
Confidence 998754
No 2
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.89 E-value=1.4e-23 Score=123.81 Aligned_cols=57 Identities=30% Similarity=0.599 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
+|.|+.|+..|+.+|+..|..++||+..++++||..+||++.+|++||||||+|+||
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNrR~k~kk 58 (58)
T d2craa1 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58 (58)
T ss_dssp CCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCHHHeeecccchhhhccC
Confidence 567899999999999999999999999999999999999999999999999999875
No 3
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.88 E-value=4e-23 Score=122.04 Aligned_cols=57 Identities=44% Similarity=0.751 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
||.|+.|++.|+.+|+..|+.++||+..++++||..+||++.+|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr 57 (58)
T d1ig7a_ 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhheeecCcchHhHhcc
Confidence 467999999999999999999999999999999999999999999999999999997
No 4
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.88 E-value=5.3e-23 Score=124.78 Aligned_cols=62 Identities=39% Similarity=0.660 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 27 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 27 ~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
++|.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+++|+....
T Consensus 1 Prr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFqNrR~k~kk~~~~ 62 (67)
T d1zq3p1 1 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 62 (67)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccceeeccccHHHhHhhhhhh
Confidence 35779999999999999999999999999999999999999999999999999999986543
No 5
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.88 E-value=1.1e-22 Score=126.43 Aligned_cols=65 Identities=34% Similarity=0.549 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
.+..++.|+.|+..|+.+|+..|..++||+..+++.||..|||++.+|+|||||||+|+|+..+.
T Consensus 10 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l~l~~~qV~iWFqNrR~k~kr~~~~ 74 (77)
T d1pufa_ 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHhhhhhhhhHHHHHHHHHH
Confidence 33456789999999999999999999999999999999999999999999999999999987664
No 6
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.88 E-value=7.1e-23 Score=120.49 Aligned_cols=57 Identities=46% Similarity=0.685 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
++.|+.|++.|+.+|+..|..++||+..++++||..|||++.+|++||||||+++||
T Consensus 1 k~~R~~ft~~Q~~~Le~~F~~n~yp~~~~r~~LA~~l~L~~~qV~~WFqNrR~k~kk 57 (57)
T d2e1oa1 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57 (57)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHhhhhhhhhccC
Confidence 467899999999999999999999999999999999999999999999999999986
No 7
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.88 E-value=1.1e-22 Score=122.63 Aligned_cols=63 Identities=59% Similarity=1.026 Sum_probs=59.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 26 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 26 ~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
+.||.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||+|+|+|+....
T Consensus 1 k~rr~Rt~ft~~Q~~~Le~~F~~n~yPs~~~r~~LA~~lgl~~~~V~~WFqNrR~k~kk~~~~ 63 (65)
T d1fjla_ 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTS 63 (65)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhCCCHHHhhHhhhhHHHHHHhcccc
Confidence 357889999999999999999999999999999999999999999999999999999987653
No 8
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.88 E-value=8.7e-23 Score=120.10 Aligned_cols=56 Identities=46% Similarity=0.682 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 29 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 29 r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
|.|+.|++.|+.+|+..|..++||+..++++||..+||++.+|++||||||+|+||
T Consensus 1 R~Rt~fT~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~vWFqNrR~k~kk 56 (57)
T d1jgga_ 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56 (57)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhHhhhcchhhhhhhhc
Confidence 56899999999999999999999999999999999999999999999999999997
No 9
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.88 E-value=6.8e-23 Score=119.82 Aligned_cols=55 Identities=36% Similarity=0.623 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
|+.|+..|+.+|+..|..++||+..++.+||..|||++++|+|||||||+|+||.
T Consensus 1 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFQNrRak~kk~ 55 (56)
T d9anta_ 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55 (56)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhHeeeccccchhhhhhc
Confidence 7899999999999999999999999999999999999999999999999999984
No 10
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.87 E-value=2.3e-23 Score=129.62 Aligned_cols=66 Identities=35% Similarity=0.538 Sum_probs=60.7
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 22 RRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 22 ~~~~~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
+.+.+++|.|++|+.+|+.+|+..|..++||+..+++.||..+||++.+|++||||||+|.|+...
T Consensus 4 g~p~k~rr~Rt~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 69 (77)
T d1vnda_ 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCSSSSCSSCCCCCTTHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHSSSSCSSSCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhhhhhcchhHHHHHHHHhh
Confidence 445667888999999999999999999999999999999999999999999999999999887543
No 11
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.87 E-value=1.7e-22 Score=117.25 Aligned_cols=53 Identities=42% Similarity=0.726 Sum_probs=51.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 29 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 29 r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
|.|+.|++.|+.+|+..|..++||+..++.+||..+||++.+|++||||||+|
T Consensus 1 R~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~lgL~~~qV~vWFqNrRaK 53 (53)
T d1p7ia_ 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53 (53)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCCccCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChHHhhhcccccCCC
Confidence 56899999999999999999999999999999999999999999999999986
No 12
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.86 E-value=3.4e-22 Score=121.47 Aligned_cols=62 Identities=35% Similarity=0.652 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhh
Q psy2123 27 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 27 ~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
+||.|+.|++.|+.+|+..|..++||+..++..||..+||++.+|++||||+|+++|+..+.
T Consensus 2 krr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kk~~~~ 63 (68)
T d1ftta_ 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccceeeecccHHHHHhhcccc
Confidence 36789999999999999999999999999999999999999999999999999999986543
No 13
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.86 E-value=5.7e-22 Score=120.50 Aligned_cols=62 Identities=65% Similarity=1.031 Sum_probs=58.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhhhh
Q psy2123 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNERNF 89 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~~~ 89 (143)
+|.|+.|++.|+.+|+..|..++||+..+++.||..+||++.+|++||||+|+++|+..+..
T Consensus 2 rR~Rt~ft~~Ql~~Le~~F~~n~yP~~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kr~~~~~ 63 (68)
T d2cuea1 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 63 (68)
T ss_dssp CCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcChhheeecCcchhHHHHhhhhhh
Confidence 56799999999999999999999999999999999999999999999999999999876543
No 14
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.85 E-value=1.1e-21 Score=120.27 Aligned_cols=60 Identities=30% Similarity=0.486 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 28 RRNRTTFNSHQLNALEKVFER-THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~~-~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
++.|+.|+.+|+.+|+..|.. ++||+..++++||..+||++++|++||||||+|+||...
T Consensus 2 ~~~r~~fT~~Ql~~Le~~F~~~n~yP~~~~r~~LA~~lgL~~~~VqvWFqNrRak~rk~~~ 62 (72)
T d1uhsa_ 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHccccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccC
Confidence 467899999999999999986 789999999999999999999999999999999998653
No 15
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.85 E-value=2.9e-22 Score=119.07 Aligned_cols=58 Identities=57% Similarity=0.924 Sum_probs=56.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
||.|+.|+++|+.+|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr~ 59 (60)
T d1yz8p1 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59 (60)
T ss_dssp SCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHCCChHHHHHHhHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 16
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.84 E-value=1.1e-21 Score=118.56 Aligned_cols=62 Identities=35% Similarity=0.600 Sum_probs=58.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 26 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 26 ~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
+.+|.|+.|+++|+.+|+..|..|+||+..+++.||..+||++.+|++||||+|++.|+...
T Consensus 2 k~kR~Rt~~t~~Q~~~Le~~F~~n~~Ps~~~~~~LA~~l~l~~~~V~~WFqNrR~k~kk~~~ 63 (66)
T d1bw5a_ 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHCCCCCHHHHHHHHHHcCcCHHHhhhhhHhHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999887543
No 17
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.84 E-value=2e-21 Score=114.53 Aligned_cols=57 Identities=32% Similarity=0.483 Sum_probs=54.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 29 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 29 r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
|.|+.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||||+|+++|+.
T Consensus 1 r~Rt~~s~~q~~~Le~~F~~~~~P~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kr~ 57 (58)
T d1au7a1 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 57 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHhc
Confidence 568999999999999999999999999999999999999999999999999998874
No 18
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.84 E-value=1.4e-21 Score=118.30 Aligned_cols=60 Identities=30% Similarity=0.461 Sum_probs=56.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 26 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 26 ~~rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
.++|.|+.|++.|+.+|+.+|..++||+..++++||..+||++.+|++||||+|+++||.
T Consensus 7 ~~rr~Rt~~t~~q~~~Le~~F~~n~~P~~~~r~~La~~~~l~~~~V~~WFqNrR~k~Kk~ 66 (67)
T d1ocpa_ 7 ARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66 (67)
T ss_dssp CSSSCCSSCCHHHHHHHHHHHSSCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHSSSSSC
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHHHHcCCHHHHHHHhHHHHHHHhcC
Confidence 356789999999999999999999999999999999999999999999999999998763
No 19
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.84 E-value=4.4e-21 Score=120.61 Aligned_cols=61 Identities=33% Similarity=0.592 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcC---------------CChhHHHHHHhhHHHHHHHhhhh
Q psy2123 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVC---------------LSEARVQVWFQNRRAKFRRNERN 88 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lg---------------l~~~~V~~WFqNrR~k~rk~~~~ 88 (143)
|+.|+.|++.|+.+|+.+|..++||+..++++||..+| |++.+|++||||||+|+|+....
T Consensus 1 Rr~R~~ft~~Ql~~LE~~F~~n~yP~~~~R~~LA~~~~~~~~~~~~~~~~~~~l~~~~V~vWFqNRR~k~kk~~~~ 76 (82)
T d2cufa1 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 76 (82)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccccccccchhccCCCHHHHHHHHhhhHHHHHHhhhH
Confidence 57899999999999999999999999999999999875 99999999999999999997654
No 20
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.83 E-value=3.2e-21 Score=111.72 Aligned_cols=53 Identities=30% Similarity=0.550 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
|+.|+++|+.+|+..|..++||+..++..||..+||++.+|++||||||+|.|
T Consensus 1 Rt~~s~~q~~~Le~~F~~~~~P~~~~~~~LA~~lgl~~~qV~~WFqNrR~k~K 53 (53)
T d1le8a_ 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCHHHHHHHHHhhhhccC
Confidence 68899999999999999999999999999999999999999999999999864
No 21
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82 E-value=7.6e-21 Score=116.49 Aligned_cols=59 Identities=24% Similarity=0.365 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 26 KPRRNRTTFNSHQLNALEKVFE-RTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 26 ~~rr~R~~~~~~q~~~L~~~f~-~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
..++.|+.|+++|+.+|+.+|. .++||+..++++||.++||+..+|++||||+|++.|+
T Consensus 6 ~~~r~R~~~t~~Q~~~Le~~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WFqNrR~k~kk 65 (71)
T d1wi3a_ 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCccCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHhhHhhhcc
Confidence 3567899999999999999997 4899999999999999999999999999999999876
No 22
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82 E-value=9.1e-21 Score=111.30 Aligned_cols=56 Identities=30% Similarity=0.465 Sum_probs=54.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 30 NRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 30 ~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
+||.|+.+|+.+|+..|..++||+..++..||..+||++.+|++||||+|+++||.
T Consensus 1 kRT~~~~~q~~~Le~~F~~~~~P~~~~~~~LA~~lgL~~~qV~~WFqNrR~k~kk~ 56 (57)
T d1e3oc1 1 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 56 (57)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcc
Confidence 48999999999999999999999999999999999999999999999999999874
No 23
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.79 E-value=4.8e-20 Score=115.27 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 24 KPKPRRNRTTFNSHQLNALEKVFER----THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 24 ~~~~rr~R~~~~~~q~~~L~~~f~~----~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
..+.+|.|+.|+.+|+.+|+.+|++ ++||+..++++||..|||++.+|+|||||+|++.++
T Consensus 14 ~~~~kR~Rt~ft~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~i~vWFqN~R~~~k~ 78 (80)
T d1wh7a_ 14 GGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred ccCCCCccccCCHHHHHHHHHHHHHhcccccCcCHHHHHHHHHHHCCCHHHeeeecccCcCCCCC
Confidence 3456788999999999999999986 789999999999999999999999999999987653
No 24
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79 E-value=2.1e-19 Score=111.36 Aligned_cols=55 Identities=16% Similarity=0.261 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
.++++|+.+|+..|..++||+..+++.||..+||++.+|++||||||++.++...
T Consensus 10 ~~T~~Q~~~Le~~F~~~~~P~~~~r~~LA~~l~l~~~~V~~WFqNrR~r~k~~~~ 64 (76)
T d2ecba1 10 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 64 (76)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHhHHHHHHHHHHHhH
Confidence 3589999999999999999999999999999999999999999999998776544
No 25
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78 E-value=4.8e-19 Score=109.68 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=53.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhh
Q psy2123 30 NRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86 (143)
Q Consensus 30 ~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~ 86 (143)
.+..++.+|+.+|+..|..++||+..++..||..+||+..+|++||+|+|+++|+..
T Consensus 6 ~~~r~T~eQ~~~Le~~F~~n~~Ps~~~~~~La~~~gL~~~qV~~WF~NrR~k~k~~~ 62 (76)
T d2ecca1 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhch
Confidence 345689999999999999999999999999999999999999999999999999753
No 26
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.78 E-value=5.4e-20 Score=105.29 Aligned_cols=50 Identities=22% Similarity=0.382 Sum_probs=48.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHH
Q psy2123 30 NRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 30 ~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR 79 (143)
+|+.|+++|+.+|+..|..++||+..++.+||..+||++++|++||||||
T Consensus 1 PRt~ft~~Q~~~Le~~F~~n~~P~~~~~~~LA~~l~l~~~~V~~WFqNrR 50 (50)
T d1s7ea1 1 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50 (50)
T ss_dssp CCSCCCHHHHHHHHHHTTSSCSSTHHHHHHHHTTSCSSSHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhhcCCcCc
Confidence 58999999999999999999999999999999999999999999999987
No 27
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77 E-value=8.4e-19 Score=107.78 Aligned_cols=60 Identities=35% Similarity=0.653 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHhhh
Q psy2123 28 RRNRTTFNSHQLNALEKVFE---RTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~---~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~~~ 87 (143)
||.|+.|+.+|+.+|+.+|. .++||+..+++.||..+||+..+|++||+|+|++.++...
T Consensus 2 rk~R~~~t~~q~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~r~k~~~~ 64 (73)
T d1pufb_ 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhcccch
Confidence 56789999999999999997 4889999999999999999999999999999999987543
No 28
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}
Probab=99.75 E-value=4.4e-19 Score=110.07 Aligned_cols=56 Identities=29% Similarity=0.436 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcC---------------------CChhHHHHHHhhHHHHHHHhh
Q psy2123 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVC---------------------LSEARVQVWFQNRRAKFRRNE 86 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lg---------------------l~~~~V~~WFqNrR~k~rk~~ 86 (143)
|++|++.|+.+|+.+|+.++||+..+++.||.+|+ |++.+|++||+|||++.|+..
T Consensus 1 R~~~tp~Ql~~Le~~F~~n~yPs~~~Re~LA~~ln~~~~~~~~~~~~~~~~~~~~~vt~~~V~~WF~NRR~~~kr~~ 77 (78)
T d1lfba_ 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRH 77 (78)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC
T ss_pred CccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhchhhhccccccccccccccccCCCHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999999999999999999994 899999999999999988753
No 29
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.74 E-value=5e-19 Score=101.82 Aligned_cols=50 Identities=32% Similarity=0.459 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHh-cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 35 NSHQLNALEKVFER-THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 35 ~~~q~~~L~~~f~~-~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
|++|..+||.+|.. ++||+..+++.||..+||++++|++||||||+++|+
T Consensus 1 T~~q~~iLE~~F~~~~~~P~~~~~~~LA~~~~ls~~qV~~WFqNrR~k~k~ 51 (52)
T d1x2ma1 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51 (52)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccCc
Confidence 45789999999986 789999999999999999999999999999999875
No 30
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.72 E-value=2e-18 Score=101.76 Aligned_cols=55 Identities=31% Similarity=0.518 Sum_probs=50.6
Q ss_pred CCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 29 RNRTTFNSHQLNALEKVFER-THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 29 r~R~~~~~~q~~~L~~~f~~-~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
+.+..++.++..+||.+|.. ++||+..+++.||.++||++++|++||||||+++|
T Consensus 3 k~~~~~k~~~~~iLE~~F~~~~~yPs~~~~~~LA~~lgls~~qV~~WFqNrR~k~r 58 (59)
T d2cqxa1 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58 (59)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCccccHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccC
Confidence 45677888899999999986 68999999999999999999999999999999976
No 31
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.70 E-value=2.2e-17 Score=97.57 Aligned_cols=52 Identities=31% Similarity=0.491 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 33 TFNSHQLNALEKVFERT---HYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~---~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
+|+.+|+.+|+.+|..+ +||+..+++.||..+||+..+|++||+|+|++.|+
T Consensus 4 Rft~~q~~~L~~~f~~~~~~pyPs~~e~~~La~~~gL~~~qV~~WF~N~R~r~K~ 58 (60)
T d1k61a_ 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHhHHhHhhcccccc
Confidence 49999999999999764 79999999999999999999999999999998875
No 32
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.70 E-value=4.4e-17 Score=96.84 Aligned_cols=56 Identities=21% Similarity=0.406 Sum_probs=51.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 28 RRNRTTFNSHQLNALEKVFER---THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f~~---~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
++.|+.|+++++.+|+.+|.. ++||+..++..||..+||+..+|++||+|+|+|..
T Consensus 3 krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R~l 61 (62)
T d1x2na1 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL 61 (62)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhc
Confidence 456788999999999999985 78999999999999999999999999999998754
No 33
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.95 E-value=0.16 Score=28.70 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHH
Q psy2123 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKF 82 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~ 82 (143)
|..++-.+...+-..|+..+... ...||..+|+....|..|..|+..=.
T Consensus 5 Rk~LT~~eK~~ii~~~e~g~k~s---q~eIA~~fGv~~STvs~IlKnK~kil 53 (66)
T d1hlva1 5 RRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAIL 53 (66)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred cccCCHHHHHHHHHHHHcCCcch---HHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 44588888777778888776554 45689999999999999999965443
No 34
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=88.37 E-value=0.86 Score=23.67 Aligned_cols=40 Identities=20% Similarity=0.433 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHh
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFq 76 (143)
..++++|+......+... .+ ..+||..+|++...|..||-
T Consensus 4 ~~lt~~q~~~a~~l~~~G-~s----~~~iA~~~gVSr~TiYry~p 43 (47)
T d1ijwc_ 4 RAINKHEQEQISRLLEKG-HP----RQQLAIIFGIGVSTLYRYFP 43 (47)
T ss_dssp CSSCHHHHHHHHHHHHTT-CC----HHHHHHHHTCCHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHCC-CC----HHHHHHHHCcCHHHHHhhCC
Confidence 468999999999998743 33 67899999999999999983
No 35
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=87.45 E-value=0.93 Score=24.89 Aligned_cols=47 Identities=13% Similarity=-0.026 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
+.+.+..++...|-... ...++|..+|++...|+...+.-|.+.++.
T Consensus 19 Lp~~~r~v~~l~~~~~~-----s~~eIA~~lgis~~tv~~~l~ra~~~Lr~~ 65 (68)
T d1or7a1 19 LPEDLRMAITLRELDGL-----SYEEIAAIMDCPVGTVRSRIFRAREAIDNK 65 (68)
T ss_dssp SCHHHHHHHHHHHTTCC-----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 44566666666654332 357899999999999999998877776654
No 36
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=85.97 E-value=1.3 Score=24.22 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHHh
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk~ 85 (143)
+++.+..++...|-... ...++|..+|++...|+.....-+.+.|+.
T Consensus 22 L~~~~r~v~~l~~~~~~-----s~~eIA~~lgis~~tv~~~~~ra~~~Lr~~ 68 (71)
T d1rp3a2 22 LPEREKLVIQLIFYEEL-----PAKEVAKILETSVSRVSQLKAKALERLREM 68 (71)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHhC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 56777778877774432 467899999999999999887777666654
No 37
>d1iufa1 a.4.1.7 (A:-2-75) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=77.21 E-value=2.2 Score=24.44 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=22.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhcCCCCHHH
Q psy2123 28 RRNRTTFNSHQLNALEKVF-ERTHYPDAFV 56 (143)
Q Consensus 28 rr~R~~~~~~q~~~L~~~f-~~~~~p~~~~ 56 (143)
+..|+.++..|..+|..+| ..++.|+...
T Consensus 6 ~~~R~aIs~~qK~ALR~~~~~~~~~~sqk~ 35 (78)
T d1iufa1 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQD 35 (78)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHH
T ss_pred ccccccCCHHHHHHHHHHHHhcCCCccHHH
Confidence 3568899999999999996 6777776443
No 38
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=72.51 E-value=4.5 Score=23.19 Aligned_cols=43 Identities=9% Similarity=0.285 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHh
Q psy2123 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFq 76 (143)
|..|+.+.....-..+.... ..-...+|..+|++...|..|.+
T Consensus 3 rk~Ys~EfK~~aV~l~~~~~---g~s~~~vA~~lGIs~~tl~~W~k 45 (89)
T d2jn6a1 3 TKTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWII 45 (89)
T ss_dssp CCCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC---CCcHHHHHHHHCCCHHHHHHHHH
Confidence 34588887655544443221 11256689999999999999975
No 39
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=71.14 E-value=1.5 Score=24.59 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.3
Q ss_pred HHHHHHHcCCChhHHHHHH
Q psy2123 57 REELAKKVCLSEARVQVWF 75 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WF 75 (143)
+.+||..+|++++.|..|-
T Consensus 5 k~~lA~iFGVS~~TI~~W~ 23 (68)
T d1j9ia_ 5 KKQLADIFGASIRTIQNWQ 23 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5789999999999999995
No 40
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}
Probab=68.55 E-value=2.5 Score=23.19 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHHh
Q psy2123 34 FNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCL--SEARVQVWFQ 76 (143)
Q Consensus 34 ~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl--~~~~V~~WFq 76 (143)
++++|+..|...|. .+.+.+..+...+...+|. +...|..+|+
T Consensus 2 Ls~eei~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~~~~~~~~ 51 (73)
T d2pq3a1 2 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 51 (73)
T ss_dssp CCHHHHHHHHHHHHHTCTTSSSEEEGGGHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCceEeHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 68899999999984 5557888888888888775 5667777774
No 41
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=67.75 E-value=6.9 Score=21.01 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHH
Q psy2123 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKF 82 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~ 82 (143)
|..+++.|.++|.-.-+ .+ ...++|..+|++...|+.-..+=..|.
T Consensus 2 ~p~LT~rE~~vl~l~~~--G~----s~~eIA~~L~is~~TV~~~~~~i~~Kl 47 (67)
T d1fsea_ 2 KPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKL 47 (67)
T ss_dssp CCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc--cC----CHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 34689999999966532 22 356789999999999998877655553
No 42
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=66.89 E-value=5.3 Score=21.88 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHHh
Q psy2123 32 TTFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCL--SEARVQVWFQ 76 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl--~~~~V~~WFq 76 (143)
+.++.+|+..|...|. .+.+.+..+...+...+|+ +...|..+|.
T Consensus 2 ~~lt~eqi~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~t~~e~~~~~~ 53 (77)
T d1f54a_ 2 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMN 53 (77)
T ss_dssp CCCCHHHHHHHHHHHHHTCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCeEChHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3588999999999984 4557888888888777765 4556777774
No 43
>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=61.54 E-value=3.9 Score=22.88 Aligned_cols=46 Identities=4% Similarity=0.089 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCC--ChhHHHHHHh
Q psy2123 31 RTTFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCL--SEARVQVWFQ 76 (143)
Q Consensus 31 R~~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl--~~~~V~~WFq 76 (143)
|..++.+|+..|...|. .+.+.+..+...+...+|. +...|+.+|.
T Consensus 5 ~~~Lt~~~i~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~e~~~~~~ 57 (81)
T d1avsa_ 5 RAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 57 (81)
T ss_dssp HHHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHcCCCCCeEchhHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44578999999988884 4468999999888888775 4555666664
No 44
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=61.46 E-value=3.8 Score=22.36 Aligned_cols=41 Identities=7% Similarity=0.133 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
+..-...|....+ . .....||...|++...+..+|.|+-.-
T Consensus 7 l~aA~~l~~~~G~-~-~t~~~Ia~~agvs~~~~Y~~F~~K~~L 47 (70)
T d2hkua1 7 FTAATELFLEHGE-G-VPITQICAAAGAHPNQVTYYYGSKERL 47 (70)
T ss_dssp HHHHHHHHHHHCT-T-SCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHhccc-C-chHHHHHHHHCCChhhHHhcCCCHHHH
Confidence 3344455766666 4 367899999999999999999998543
No 45
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=60.47 E-value=5.5 Score=21.91 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.8
Q ss_pred HHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
..+||..+|++.+.|..|=.++|.
T Consensus 17 Q~elA~~LGvs~~ti~~yE~G~r~ 40 (67)
T d2auwa1 17 LTTAAEALGISRRMVSYYRTAHKI 40 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467899999999999999888764
No 46
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.26 E-value=6.6 Score=22.59 Aligned_cols=44 Identities=9% Similarity=0.140 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCCChhHHHHHHh
Q psy2123 33 TFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl~~~~V~~WFq 76 (143)
.+++++...+++.|. .+.+.+..+...+....||+...+...|.
T Consensus 3 ~lt~~e~~~~~~~F~~~D~d~~G~is~~e~~~~l~~~~l~~~~l~~i~~ 51 (95)
T d1c07a_ 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHH
Confidence 467888888888884 34478888988888899999988887764
No 47
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=57.40 E-value=7.2 Score=20.90 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHH
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 73 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~ 73 (143)
.+++.+..+|...|..+.... ....++|..+|++...|+.
T Consensus 8 ~L~~rer~Ii~~ryGl~~~~~-~tl~eIa~~lgiS~erVrq 47 (61)
T d1ku3a_ 8 KLSEREAMVLKMRKGLIDGRE-HTLEEVGAYFGVTRERIRQ 47 (61)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC-CCHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCCC-CCHHHHHHHHCCCHHHHHH
Confidence 478899999999996543221 3467889999999987764
No 48
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=56.90 E-value=3.8 Score=21.91 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|=.+++
T Consensus 15 Q~elA~~lGvs~~tvs~~E~G~~ 37 (62)
T d2ppxa1 15 QEEFSARYHIPLGTLRDWEQGRS 37 (62)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHCCCC
Confidence 46789999999999999988765
No 49
>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=55.94 E-value=9.4 Score=21.69 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHcCCChhHHHHHH
Q psy2123 33 TFNSHQLNALEKVFER-----THYPDAFVREELAKKVCLSEARVQVWF 75 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~-----~~~p~~~~~~~La~~lgl~~~~V~~WF 75 (143)
.+++++...+++.|.. +.+.+..+...+....||+..+++..+
T Consensus 2 ~ls~ee~~~y~~~F~~~D~d~~G~i~~~e~~~~l~~~~l~~~~l~~i~ 49 (92)
T d1fi6a_ 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 4788999999999963 336788888888888999988876544
No 50
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=53.63 E-value=5.2 Score=20.46 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHcCCChhHHHHHHhh
Q psy2123 53 DAFVREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 53 ~~~~~~~La~~lgl~~~~V~~WFqN 77 (143)
.....+.||..+||+...+..+|+.
T Consensus 18 ~~~tl~~lA~~~~~s~~~l~r~Fk~ 42 (54)
T d1bl0a1 18 SPLSLEKVSERSGYSKWHLQRMFKK 42 (54)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3345678999999999999999963
No 51
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.00 E-value=16 Score=21.69 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChh
Q psy2123 30 NRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEA 69 (143)
Q Consensus 30 ~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~ 69 (143)
....+.+.|+.+|...+. .|+.+|...+++..
T Consensus 16 ~~~~l~~~qlavl~~L~~--------wRe~~Ar~~d~p~~ 47 (113)
T d2cpra1 16 QKKHLNTQQLTAFQLLFA--------WRDKTARREDESYG 47 (113)
T ss_dssp SSSCCCHHHHHHHHHHHH--------HHHHHHHHTTCCHH
T ss_pred cccCCCHHHHHHHHHHHH--------HHHHHHHHhCCCcc
Confidence 445689999999999873 77777777776654
No 52
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=51.40 E-value=15 Score=19.48 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
..+++.+.++|.-.-+- ..-.++|..++++...|+.-.++=..|..
T Consensus 3 ~~Lt~rE~~vl~l~~~G------~s~~eIA~~l~iS~~TV~~~~~~i~~Klg 48 (65)
T d1l3la1 3 AWLDPKEATYLRWIAVG------KTMEEIADVEGVKYNSVRVKLREAMKRFD 48 (65)
T ss_dssp CCCCHHHHHHHHHHTTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHhc------CCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 35788888888655331 23567899999999999998876655543
No 53
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=49.05 E-value=5.7 Score=21.58 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 56 VREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 56 ~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
....||...|++...|..+|.|+..-
T Consensus 24 ti~~Ia~~agvs~~~ly~~F~~K~~L 49 (72)
T d2g3ba1 24 RVNDVAEVAGVSPGLLYYHFKDRIGL 49 (72)
T ss_dssp CHHHHHHHHTSCHHHHHHHHCSHHHH
T ss_pred CHHHHHHHhCcCHHHHHHHCcCHHHH
Confidence 46778999999999999999998654
No 54
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=47.92 E-value=24 Score=20.88 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
+++.|..++.-.|-..- ...++|..+|++...|+.=++.-+.+.+.
T Consensus 17 Lp~~qR~v~~L~y~~~l-----s~~EIA~~lgiS~~aV~~~l~RA~~~L~~ 62 (106)
T d1s7oa_ 17 LTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 62 (106)
T ss_dssp SCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 67788888888775443 35688999999999999988777766654
No 55
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=47.19 E-value=5.3 Score=21.11 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.6
Q ss_pred HHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
...||..+|++...|..+|.++..-
T Consensus 22 ~~~Ia~~agvs~~tiy~~F~~K~~L 46 (62)
T d2vkva1 22 TRKLAQKLGVEQPTLYWHVKNKRAL 46 (62)
T ss_dssp HHHHHHHHTSCHHHHHHHSCCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 5678999999999999999997643
No 56
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=46.84 E-value=5.5 Score=21.53 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
+....+.|....+-. .....||...|++...|...|.|+-.-..
T Consensus 10 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~~~y~~F~~k~~L~~ 53 (69)
T d2fq4a1 10 LSASYELLLESGFKA-VTVDKIAERAKVSKATIYKWWPNKAAVVM 53 (69)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHHCcCHHHHHHHCCCHHHHHH
Confidence 344455566666543 34567899999999999999999766443
No 57
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=46.27 E-value=5.7 Score=21.54 Aligned_cols=40 Identities=15% Similarity=0.325 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 40 NALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 40 ~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+.-...|....|- ......||...|++...+..+|.|+-.
T Consensus 12 ~aa~~l~~~~G~~-~~si~~Ia~~agvs~~~~y~~F~sK~~ 51 (71)
T d1ui5a1 12 GAAADLFDRRGYE-STTLSEIVAHAGVTKGALYFHFAAKED 51 (71)
T ss_dssp HHHHHHHHHHCTT-TCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhCcc-ccCHHHHHHHHCcCHhHHHHHCcCHHH
Confidence 3334456655543 334667899999999999999998743
No 58
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=45.25 E-value=7.8 Score=20.85 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 42 LEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 42 L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
-...|....+- ......||...|++...+...|.|+-.
T Consensus 10 a~~l~~~~G~~-~~s~~~Ia~~agvs~~~~y~~F~~K~~ 47 (71)
T d1jt6a1 10 AKELFIKNGYN-ATTTGEIVKLSESSKGNLYYHFKTKEN 47 (71)
T ss_dssp HHHHHHHHCTT-TCCHHHHHHHTTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHhCcc-ccCHHHHHHHHCcCHhHHHHHCcCHHH
Confidence 33445555543 334677899999999999999999754
No 59
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=45.13 E-value=20 Score=19.47 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=21.3
Q ss_pred cCCCCHHHHHHHHHHcCCChhHHHHHHhhHH
Q psy2123 49 THYPDAFVREELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 49 ~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR 79 (143)
...|+ .++||..+||+...|.-|.....
T Consensus 24 GR~Pt---~~EiA~~lg~s~~e~~~~l~~~~ 51 (77)
T d1rp3a1 24 GREPT---DEEVAKELGISTEELFKTLDKIN 51 (77)
T ss_dssp SSCCC---HHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcCCC---HHHHHHHHCcCHHHHHHHHHHHh
Confidence 44555 45789999999999999986433
No 60
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=44.19 E-value=6.3 Score=20.93 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.5
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 19 q~~lA~~~gvs~~ti~~~E~g~~ 41 (65)
T d2croa_ 19 QTELATKAGVKQQSIQLIEAGVT 41 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHhHHHHHHCCCC
Confidence 56789999999999999987654
No 61
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=43.71 E-value=6.2 Score=21.76 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=20.1
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~i~~~E~g~~ 46 (79)
T d1y9qa1 24 LDATAQLTGVSKAMLGQIERGES 46 (79)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcchhHHHHHHcCCC
Confidence 56789999999999999998764
No 62
>d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase {Bacteriophage mu [TaxId: 10677]}
Probab=43.42 E-value=16 Score=21.64 Aligned_cols=30 Identities=7% Similarity=-0.048 Sum_probs=26.3
Q ss_pred HhcCCCCHHHHHHHHHHcCCChhHHHHHHh
Q psy2123 47 ERTHYPDAFVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 47 ~~~~~p~~~~~~~La~~lgl~~~~V~~WFq 76 (143)
..+..+-......+|.+.|++...+++||.
T Consensus 46 ~~~G~~~~~A~~~VA~~~~vs~~TL~nW~~ 75 (99)
T d2ezla_ 46 LNQGISTKTAFATVAGHYQVSASTLRDKYY 75 (99)
T ss_dssp HHTTCCHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 566677788888899999999999999996
No 63
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=42.63 E-value=7.7 Score=20.74 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 40 NALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 40 ~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
..-...|....+-. .....||..+|++...+..+|.|+-.
T Consensus 7 ~aa~~l~~~~G~~~-~si~~Ia~~agvs~~t~Y~~F~sK~~ 46 (70)
T d2gena1 7 QAALACFSEHGVDA-TTIEMIRDRSGASIGSLYHHFGNKER 46 (70)
T ss_dssp HHHHHHHHHHCTTT-CCHHHHHHHHCCCHHHHHHHTCSHHH
T ss_pred HHHHHHHHHhCccc-CCHHHHHHHHCcCHHHHHHHCCCHHH
Confidence 33444455554432 23567899999999999999998743
No 64
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=42.34 E-value=7.6 Score=20.85 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
+......|....+- ......||..+|++...+..-|.|+-.-..-
T Consensus 10 l~aa~~l~~~~g~~-~~si~~ia~~~gvs~~~~y~hF~~K~~L~~~ 54 (68)
T d2g7la1 10 VDTAVALMRAEGLE-KVTMRRLAQELDTGPASLYVYVANTAELHAA 54 (68)
T ss_dssp HHHHHHHHHHHCSS-SCCHHHHHHHTTSCHHHHTTTCCSHHHHHHH
T ss_pred HHHHHHHHHHhCcc-cCCHHHHHHHHCcCHhHhhHHCcCHHHHHHH
Confidence 34444556666543 3346678999999999999999998665443
No 65
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=42.17 E-value=24 Score=19.37 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHH------hcCCCCHHHHHHHHHHcCC--ChhHHHHHHh
Q psy2123 34 FNSHQLNALEKVFE------RTHYPDAFVREELAKKVCL--SEARVQVWFQ 76 (143)
Q Consensus 34 ~~~~q~~~L~~~f~------~~~~p~~~~~~~La~~lgl--~~~~V~~WFq 76 (143)
++.+|+..+.+.|. .+.+.+..+...+...+|+ +...|+.+|.
T Consensus 9 ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~~l~~lg~~~t~~el~~~i~ 59 (82)
T d1wrka1 9 LTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 59 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 68899999988883 2358999999998888876 4566777764
No 66
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=41.51 E-value=9 Score=20.49 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=27.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 43 EKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 43 ~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
...|....|-. .....||...|++...+...|.++-.=
T Consensus 10 ~~lf~~~G~~~-~ti~~Ia~~agvs~~~~Y~~F~~K~~L 47 (69)
T d2i10a1 10 MELFWRQGYEG-TSITDLTKALGINPPSLYAAFGSKRDL 47 (69)
T ss_dssp HHHHHHHTTTT-CCHHHHHHHHTCCHHHHHHHHCSHHHH
T ss_pred HHHHHHHCccc-CCHHHHHHHhCCChhHHHHHCcCHHHH
Confidence 34465555433 235678999999999999999987553
No 67
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=41.32 E-value=7.6 Score=20.70 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 40 NALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 40 ~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
....+.|....+-. .....||...|++...|...|.|+-.
T Consensus 8 ~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~~iy~~F~sK~~ 47 (69)
T d2np5a1 8 AALFDVAAESGLEG-ASVREVAKRAGVSIGAVQHHFSTKDE 47 (69)
T ss_dssp HHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhCccc-cCHHHHHHHhCCCHHHHHHHCcCHHH
Confidence 34444455444422 23567899999999999999998754
No 68
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=40.93 E-value=7.7 Score=20.90 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 41 ALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 41 ~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
.-...|....+-. .....||..+|++...+...|.++..
T Consensus 11 aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~~K~~ 49 (73)
T d1t56a1 11 TAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEA 49 (73)
T ss_dssp HHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHCcCHHH
Confidence 3344455555432 34567899999999999999998754
No 69
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=40.25 E-value=9.2 Score=19.98 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.7
Q ss_pred HHHHHHHcCCChhHHHHHHhhH
Q psy2123 57 REELAKKVCLSEARVQVWFQNR 78 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNr 78 (143)
..+||..+|++...|..|..++
T Consensus 17 q~elA~~~gvs~~~is~~E~g~ 38 (63)
T d1r69a_ 17 QAELAQKVGTTQQSIEQLENGK 38 (63)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 4568999999999999998764
No 70
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=39.74 E-value=9.2 Score=20.57 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=19.2
Q ss_pred HHHHHHHcCCChhHHHHHHhhH
Q psy2123 57 REELAKKVCLSEARVQVWFQNR 78 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNr 78 (143)
..+||..+|++...|..|..++
T Consensus 22 q~elA~~~gv~~~~is~ie~g~ 43 (69)
T d2a6ca1 22 QFKAAELLGVTQPRVSDLMRGK 43 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHHHcCHhHHHHHHccc
Confidence 4578999999999999999865
No 71
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=39.51 E-value=8.3 Score=20.50 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=19.7
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 17 q~elA~~~gis~~~is~~e~g~~ 39 (66)
T d1utxa_ 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHhcccCHHHHHHHHcCCC
Confidence 45789999999999999987764
No 72
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=39.13 E-value=26 Score=18.76 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
+|+.+..+|.-... .+ ...++|..+|++...|+.-..+-..|
T Consensus 13 LT~rE~~vl~~l~~--G~----s~~eIA~~l~iS~~TV~~~~~~i~~K 54 (70)
T d1yioa1 13 LTGREQQVLQLTIR--GL----MNKQIAGELGIAEVTVKVHRHNIMQK 54 (70)
T ss_dssp SCHHHHHHHHHHTT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67778777766532 22 24578999999999999877655444
No 73
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=38.86 E-value=8.7 Score=20.29 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=19.5
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
...||..+|++...|..|-.+++
T Consensus 19 q~~lA~~~gvs~~~i~~~e~g~~ 41 (66)
T d2r1jl1 19 QAALGKMVGVSNVAISQWERSET 41 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 45689999999999999997754
No 74
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=38.82 E-value=7.2 Score=20.94 Aligned_cols=37 Identities=16% Similarity=0.360 Sum_probs=27.1
Q ss_pred HHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 45 VFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 45 ~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
.|.+..-........||...|++...+...|.|+..=
T Consensus 14 l~~e~~G~~~~t~~~Ia~~agvs~~~iy~hF~~K~~L 50 (68)
T d1z0xa1 14 LLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQAL 50 (68)
T ss_dssp HHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHH
T ss_pred HHHHcCCccccCHHHHHHHHCcchhHHHHhcCCHHHH
Confidence 3443333444456789999999999999999997654
No 75
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=38.36 E-value=8.9 Score=20.42 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=19.7
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+.+
T Consensus 17 q~~la~~~gis~~~i~~~E~g~~ 39 (68)
T d1b0na2 17 LSELAEKAGVAKSYLSSIERNLQ 39 (68)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 46789999999999999998754
No 76
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=38.32 E-value=9.3 Score=20.84 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=26.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 43 EKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 43 ~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
...|....+- ......||..+|++...+...|.|+-.
T Consensus 16 ~~l~~~~G~~-~~s~~~Ia~~agvs~~~lY~~F~~K~~ 52 (77)
T d2gfna1 16 LALIAREGIS-AVTTRAVAEESGWSTGVLNHYFGSRHE 52 (77)
T ss_dssp HHHHHHHCGG-GCCHHHHHHHHSSCHHHHHHHTSSHHH
T ss_pred HHHHHHhCcc-ccCHHHHHHHHCCCHHHHHHHCcCHHH
Confidence 3345555542 223567899999999999999998754
No 77
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=38.19 E-value=9.1 Score=20.48 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=19.3
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
..+||..+|++...|..|-.+++
T Consensus 25 q~~lA~~~gis~~~i~~~E~g~~ 47 (69)
T d1y7ya1 25 QETLAFLSGLDRSYVGGVERGQR 47 (69)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHhHhCCCHHHHHHHHCCCC
Confidence 45689999999999999987764
No 78
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=38.11 E-value=26 Score=18.50 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHH
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKF 82 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~ 82 (143)
.+|+.+..+|.-.-+-. .-.++|.++|+++..|+.-..+-..|.
T Consensus 6 ~LT~rE~~vl~ll~~G~------s~~eIA~~l~iS~~TV~~~~~~i~~Kl 49 (67)
T d1a04a1 6 QLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKM 49 (67)
T ss_dssp GSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCC------CHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 58899999987665322 246789999999999998776655543
No 79
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=37.99 E-value=26 Score=18.43 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHh
Q psy2123 38 QLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 38 q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFq 76 (143)
+..+|+...+...+.+ ..+||..+|++.+.|+.=..
T Consensus 9 ~~~Il~~L~~~~~~vs---~~~La~~l~VS~~TI~rdi~ 44 (65)
T d1j5ya1 9 LKSIVRILERSKEPVS---GAQLAEELSVSRQVIVQDIA 44 (65)
T ss_dssp HHHHHHHHHHCSSCBC---HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCc---HHHHHHHHCCCHHHHHHHHH
Confidence 3455555544444455 45789999999998876554
No 80
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=37.80 E-value=36 Score=20.03 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
+++.|..++.-.|...- ...++|..+|++...|+.=...-+.+.+.
T Consensus 19 Lpe~QR~vl~L~~~e~l-----s~~EIA~~lgiS~~aV~~~l~Ra~~~L~~ 64 (106)
T d1xsva_ 19 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 64 (106)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC-----cHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 67788888888775442 35678999999999998876655555443
No 81
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=37.44 E-value=17 Score=19.74 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHH
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 73 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~ 73 (143)
.+++.+..+|...|..+.... ....++|..+|++...|+.
T Consensus 5 ~L~~rE~~Ii~~rfGl~~~~~-~tl~eI~~~lgiSrerVrq 44 (68)
T d2p7vb1 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQ 44 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCCCCc-CCHHHHHHHHCCCHHHHHH
Confidence 367888999999997654322 3466799999999887654
No 82
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=36.90 E-value=9.6 Score=20.94 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 40 NALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 40 ~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
......|....|- ......||...|++...+...|.++-.
T Consensus 14 ~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~y~~F~sKe~ 53 (78)
T d2o7ta1 14 TTTCNLYRTHHHD-SLTMENIAEQAGVGVATLYRNFPDRFT 53 (78)
T ss_dssp HHHHHHHHHSCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhCcc-ccCHHHHHHHhCCCHHHHHHHCcCHHH
Confidence 3444556666654 334677899999999999999998744
No 83
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.77 E-value=18 Score=19.84 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHc-CCChhHHHH
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKV-CLSEARVQV 73 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~l-gl~~~~V~~ 73 (143)
+++.|..+|.-. +.++......+.+|+.+| |++..+|+.
T Consensus 4 Ls~~q~~V~~~i-~s~~~~eGi~~~el~~~l~~~~~~~i~~ 43 (69)
T d1dpua_ 4 LTVAQNQVLNLI-KACPRPEGLNFQDLKNQLKHMSVSSIKQ 43 (69)
T ss_dssp SCHHHHHHHHHH-HHCCCTTTEEHHHHHHHSTTSCHHHHHH
T ss_pred CCHHHHHHHHHH-HhCCCccCcCHHHHHHHccCCCHHHHHH
Confidence 467777777655 456666667788898888 799888764
No 84
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=36.27 E-value=10 Score=20.40 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 41 ALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 41 ~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
.....|....|-. .....||...|++...+...|.|+-.
T Consensus 12 aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~y~~F~~K~~ 50 (72)
T d1pb6a1 12 AALDTFSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKEA 50 (72)
T ss_dssp HHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHSSSHHH
T ss_pred HHHHHHHHhCccc-cCHHHHHHHhCCChHHHHHHCcCHHH
Confidence 3344455555432 33567899999999999999998643
No 85
>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}
Probab=35.83 E-value=26 Score=19.09 Aligned_cols=39 Identities=10% Similarity=0.144 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcC-CChhHHHH
Q psy2123 35 NSHQLNALEKVFE-----RTHYPDAFVREELAKKVC-LSEARVQV 73 (143)
Q Consensus 35 ~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lg-l~~~~V~~ 73 (143)
|++++..|++.|. .+.+.+..+...+...+| ++...|+-
T Consensus 1 T~ee~~e~~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~ei~~ 45 (81)
T d2opoa1 1 TPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRR 45 (81)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhhcCCHHHHHH
Confidence 4567777777763 344666677666666665 44444443
No 86
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=35.71 E-value=11 Score=20.62 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 41 ALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 41 ~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
.....|....| .......||...|++...+...|.++..-
T Consensus 12 aa~~~~~~~G~-~~~ti~~Ia~~agvs~~s~y~~F~~K~~l 51 (79)
T d2fbqa1 12 AAEQLFAEKGF-AETSLRLITSKAGVNLAAVNYHFGSKKAL 51 (79)
T ss_dssp HHHHHHHHHCS-TTCCHHHHHHHHTSCHHHHHHHTCSHHHH
T ss_pred HHHHHHHHhCc-ccccHHHHHHHHCcChhHHHHHCcCHHHH
Confidence 33444555554 33346678999999999999999987543
No 87
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=35.53 E-value=34 Score=19.10 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
..+|+.+..+|.-...-- ...+||..++++.+.|+.-.++-+.|..
T Consensus 21 ~~LT~rE~~vl~ll~~G~------s~~eIA~~l~iS~~TV~~~~~~i~~Kl~ 66 (87)
T d1p4wa_ 21 KRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 66 (87)
T ss_dssp SSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 468999999998877533 3568999999999999988877666643
No 88
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=35.13 E-value=11 Score=21.25 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
..+||..+|++...|..|-.++|.
T Consensus 17 q~~LA~~lGvs~~~is~ie~g~~~ 40 (87)
T d2icta1 17 LREFARAMEIAPSTASRLLTGKAA 40 (87)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred HHHHHHHHhhcHHHHHHHHHhccC
Confidence 457899999999999999887754
No 89
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=34.66 E-value=8 Score=21.38 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 41 ALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 41 ~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
.....|....|- ......||...|++...+...|.|+-.
T Consensus 19 aa~~l~~~~G~~-~~ti~~Ia~~agvs~~t~Y~~F~~K~~ 57 (81)
T d1rkta1 19 AAKTVFKRKGFE-LTTMKDVVEESGFSRGGVYLYFSSTEE 57 (81)
T ss_dssp HHHHHHHHHCST-TCCHHHHHHHHTSCHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCcc-cCCHHHHHHHhCcCHHHHHHHCcCHHH
Confidence 333445555543 234678899999999999999999754
No 90
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=34.47 E-value=11 Score=20.32 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
++...+.|....+-. .....||...|++...|...|.|+..-
T Consensus 10 l~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~~K~~L 51 (74)
T d1v7ba1 10 LRTAIDYIGEYSLET-LSYDSLAEATGLSKSGLIYHFPSRHAL 51 (74)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHCSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhCccc-cCHHHHHHHhCcCcchHhhhCCCHHHH
Confidence 344555566666533 335678999999999999999998653
No 91
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=34.18 E-value=14 Score=19.99 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 56 VREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 56 ~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
....||+.+|++...|...|.++-.
T Consensus 25 ti~~Ia~~agvs~~~iY~~F~~k~~ 49 (75)
T d2id6a1 25 TTDEIAEKAGVAKGLIFHYFKNKEE 49 (75)
T ss_dssp CHHHHHHHHTCCTHHHHHHHSSHHH
T ss_pred CHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 3567899999999999999998754
No 92
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=33.72 E-value=18 Score=20.73 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHH
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 73 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~ 73 (143)
.+++.+..+|...|....... ....+||..+|++...|+.
T Consensus 18 ~L~~rE~~Ii~~rfGl~~~~~-~tl~eI~~~lgiSrERVRQ 57 (87)
T d1ttya_ 18 TLSPREAMVLRMRYGLLDGKP-KTLEEVGQYFNVTRERIRQ 57 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC-CCHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCCCCc-CCHHHHHHHhCCCHHHHHH
Confidence 467889999999996544322 3567899999999887754
No 93
>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=33.31 E-value=39 Score=20.03 Aligned_cols=43 Identities=7% Similarity=0.223 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCCCh--hHHHHHHh
Q psy2123 34 FNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCLSE--ARVQVWFQ 76 (143)
Q Consensus 34 ~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl~~--~~V~~WFq 76 (143)
++++|+..|...|. .+.+.+..+...+...+|+.. ..|...+.
T Consensus 1 L~~~qi~e~~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~el~~~~~ 50 (142)
T d1wdcb_ 1 LPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK 50 (142)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCcCChHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 46788999988884 445788888888888877643 44555554
No 94
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=33.26 E-value=15 Score=19.51 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 41 ALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 41 ~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
.-...|....|-. -....||...|++...+...|.|+..
T Consensus 10 aa~~l~~~~G~~~-~ti~~Ia~~agvs~~~~Y~~F~~K~~ 48 (68)
T d2d6ya1 10 AAVAEFARHGIAG-ARIDRIAAEARANKQLIYAYYGNKGE 48 (68)
T ss_dssp HHHHHHHHHTTTS-CCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHhCccc-cCHHHHHHHHCcchhHHHHHCcCHHH
Confidence 3344455555433 23567899999999999999999754
No 95
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=33.20 E-value=15 Score=19.79 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHHHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k~rk 84 (143)
+......|....|-. .....||...|++...|...|.|+..-...
T Consensus 10 l~aa~~l~~~~G~~~-~si~~Ia~~agvs~~~~Y~~F~~K~~L~~~ 54 (73)
T d2fx0a1 10 LKAAKKKFGERGYEG-TSIQEIAKEAKVNVAMASYYFNGKENLYYE 54 (73)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHhCccc-CcHHHHHHHHCcChhHHHHHCcCHHHHHHH
Confidence 334445566665533 235678999999999999999998655443
No 96
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=32.88 E-value=12 Score=20.29 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=18.8
Q ss_pred HHHHHHHcCCChhHHHHHHhhH
Q psy2123 57 REELAKKVCLSEARVQVWFQNR 78 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNr 78 (143)
..+||..+|++...|..|...+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (77)
T d2b5aa1 26 QEELADLAGLHRTYISEVERGD 47 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 4568999999999999998764
No 97
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=32.70 E-value=12 Score=20.09 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 40 NALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 40 ~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
......|....+ .......||...|++...+...|.|+-.
T Consensus 12 ~aa~~l~~~~G~-~~~t~~~Ia~~agvs~~~~y~~F~~k~~ 51 (75)
T d3c07a1 12 ETAMRLFQERGY-DRTTMRAIAQEAGVSVGNAYYYFAGKEH 51 (75)
T ss_dssp HHHHHHHHHTCS-TTCCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhCc-ccCCHHHHHHHHCcCHHHHHHHCcCHHH
Confidence 344445665554 3344667899999999999999998754
No 98
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=32.46 E-value=9.6 Score=20.72 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 56 VREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 56 ~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
....||..+|++...+...|.|+..
T Consensus 27 t~~~Ia~~agvs~~~~Y~~F~~K~~ 51 (75)
T d2hyja1 27 TIGRLAEELEMSKSGVHKHFGTKET 51 (75)
T ss_dssp CHHHHHHHHTCCHHHHHTTCSSHHH
T ss_pred cHHHHHHHHCcCHHHHHHHCcCHHH
Confidence 3567899999999999999998754
No 99
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=32.05 E-value=12 Score=20.88 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 43 EKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 43 ~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
...|....|- .. ...||...|++...|...|.++-.
T Consensus 22 ~~l~~~~G~~-~t-~~~Ia~~agvs~~~~Y~~F~sK~~ 57 (88)
T d1t33a1 22 LAQFGEYGLH-AT-TRDIAALAGQNIAAITYYFGSKED 57 (88)
T ss_dssp HHHHHHHGGG-SC-HHHHHHHHTSCHHHHHHHHSSHHH
T ss_pred HHHHHHhccc-cC-HHHHHHHhCCChhhhhccCCCHHH
Confidence 3346666663 33 457999999999999999998754
No 100
>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=31.58 E-value=16 Score=20.18 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHH
Q psy2123 40 NALEKVFERTHYPDAFVREELAKKVCLSEARVQV 73 (143)
Q Consensus 40 ~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~ 73 (143)
++|...|...+ | .=|..||..+|++++.|+.
T Consensus 6 ~vl~~l~ll~q-P--iGRr~La~~L~l~Er~vRt 36 (69)
T d2p8ta1 6 DVLAVIFLLKE-P--LGRKQISERLELGEGSVRT 36 (69)
T ss_dssp HHHHHHHHTTS-C--BCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHcC-C--ccHHHHHHHcCCcHHHHHH
Confidence 34455554332 2 3467899999999999875
No 101
>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.73 E-value=28 Score=19.68 Aligned_cols=41 Identities=5% Similarity=0.041 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHcCCChhHHHH
Q psy2123 33 TFNSHQLNALEKVFER----THYPDAFVREELAKKVCLSEARVQV 73 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~----~~~p~~~~~~~La~~lgl~~~~V~~ 73 (143)
.+++++...+++.|.. +.+.+..+...+....||+...++.
T Consensus 3 ~ls~ee~~~y~~~F~~~D~~~G~i~~~el~~~l~~~gl~~~~L~~ 47 (95)
T d2jxca1 3 AVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGR 47 (95)
T ss_dssp SSCHHHHHHHHHHHHHTCCBTTEEEHHHHHHHHTTSSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHHHcCCCHHHHHH
Confidence 4678888888888853 3466777777877788888877663
No 102
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=29.25 E-value=10 Score=20.58 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
++.....|....+-. .....||...|++...+..+|.|+..
T Consensus 13 l~aa~~l~~~~G~~~-~si~~Ia~~agvs~~t~Y~~F~~Ke~ 53 (76)
T d2fd5a1 13 LGAATQALLERGAVE-PSVGEVMGAAGLTVGGFYAHFQSKDA 53 (76)
T ss_dssp HHHHHHHHHHHTTTS-CCHHHHHHHTTCCGGGGGGTCSCHHH
T ss_pred HHHHHHHHHHhCccc-ccHHHHHHHhCCCccchhhcCCCHHH
Confidence 344445566665432 34667899999999999999998754
No 103
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=28.90 E-value=20 Score=16.60 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Q psy2123 36 SHQLNALEKVFERTH--YPDAFVREELAKK 63 (143)
Q Consensus 36 ~~q~~~L~~~f~~~~--~p~~~~~~~La~~ 63 (143)
.+.+..+-..|.+|. |.+..+...+...
T Consensus 3 EeELae~FRifDkNaDGyiD~eEl~~ilr~ 32 (34)
T d1ctda_ 3 EEELANAFRIFDKNADGYIDIEELGEILRA 32 (34)
T ss_dssp HHHHHHHHHTTCCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccccHHHHHHHHHh
Confidence 456677777777665 7887776665543
No 104
>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.88 E-value=43 Score=19.81 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCCC
Q psy2123 34 FNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCLS 67 (143)
Q Consensus 34 ~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl~ 67 (143)
|+..|+..|...|. .+.+.+..+...+...+|..
T Consensus 1 f~~~qi~el~e~F~~~D~~~~G~I~~~e~~~~l~~lg~~ 39 (145)
T d2mysb_ 1 FDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRL 39 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhCCC
Confidence 67889999988885 45578888888877788754
No 105
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=27.63 E-value=19 Score=20.95 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=16.9
Q ss_pred HHHHHHHcCCChhHHHHHHh
Q psy2123 57 REELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFq 76 (143)
..++|..+|++...|+.|=.
T Consensus 5 I~e~A~~~gvs~~tlR~Ye~ 24 (109)
T d1r8da_ 5 VKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999853
No 106
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=27.50 E-value=17 Score=19.18 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCChhHHHHHHhhHHHHHH
Q psy2123 56 VREELAKKVCLSEARVQVWFQNRRAKFR 83 (143)
Q Consensus 56 ~~~~La~~lgl~~~~V~~WFqNrR~k~r 83 (143)
....||..+|++...+...|.|+..-..
T Consensus 21 ti~~Ia~~agvs~~~iY~~F~~K~~L~~ 48 (65)
T d2g7ga1 21 RMPDLARHLNVQVSSIYHHAKGRAAVVE 48 (65)
T ss_dssp CHHHHHHHTTSCHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHhCccccchhhcCCCHHHHHH
Confidence 3568999999999999999999866544
No 107
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=26.86 E-value=20 Score=21.14 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=16.9
Q ss_pred HHHHHHHcCCChhHHHHHHh
Q psy2123 57 REELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFq 76 (143)
..++|..+||+...|+.|=.
T Consensus 6 I~evA~~~gvs~~tlR~Ye~ 25 (118)
T d1r8ea1 6 IGEVSKLANVSIKALRYYDK 25 (118)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999863
No 108
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=26.63 E-value=18 Score=19.20 Aligned_cols=39 Identities=18% Similarity=0.363 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 41 ALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 41 ~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
.....|....+- ......||...|++...+...|.|+-.
T Consensus 9 aa~~l~~~~G~~-~~ti~~Ia~~agvs~~~~y~~F~~K~~ 47 (72)
T d1vi0a1 9 AAVEVIAENGYH-QSQVSKIAKQAGVADGTIYLYFKNKED 47 (72)
T ss_dssp HHHHHHHHHCGG-GCCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHhCcc-cccHHHHHHHHCcCHHHHHHHCcCHHH
Confidence 333445544432 223567899999999999999998754
No 109
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.56 E-value=35 Score=18.21 Aligned_cols=41 Identities=5% Similarity=0.031 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHH
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR 79 (143)
++-+-...+-++++.. ....++|..++++..-|..|.+..|
T Consensus 15 ls~DLR~Riv~~~~~G-----~s~r~aA~rf~VS~s~v~k~l~r~r 55 (63)
T d1k78a1 15 LPDVVRQRIVELAHQG-----VRPCDISRQLRVSHGCVSKILGRYY 55 (63)
T ss_dssp CCHHHHHHHHHHHHTT-----CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444444444445432 1356789999999999999987543
No 110
>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}
Probab=26.47 E-value=58 Score=18.95 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHcCCC--hhHHHHHH
Q psy2123 33 TFNSHQLNALEKVFE-----RTHYPDAFVREELAKKVCLS--EARVQVWF 75 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~-----~~~~p~~~~~~~La~~lgl~--~~~V~~WF 75 (143)
.++.+|+..|...|. .+.+.+..+...+...++.. ...|+..|
T Consensus 2 ~lt~~e~~~l~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~ 51 (146)
T d1exra_ 2 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 51 (146)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 367788888888874 34467777777766665543 34444444
No 111
>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.47 E-value=11 Score=22.72 Aligned_cols=28 Identities=14% Similarity=-0.044 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHcCCChhHHHHHHhh
Q psy2123 50 HYPDAFVREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 50 ~~p~~~~~~~La~~lgl~~~~V~~WFqN 77 (143)
...++.+.++|...++.+...|+.|++-
T Consensus 6 s~l~p~~l~~L~~~T~fs~~ei~~l~~~ 33 (118)
T d1tuza_ 6 GLISPSDFAQLQKYMEYSTKKVSDVLKL 33 (118)
T ss_dssp SCSCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3456667777788888888888888853
No 112
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=25.98 E-value=11 Score=20.24 Aligned_cols=41 Identities=5% Similarity=0.105 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+....+.|....+-. .....||..+|++...+...|.|+-.
T Consensus 9 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~slY~yF~~k~~ 49 (72)
T d1zk8a1 9 VETAAEIADANGVQE-VTLASLAQTLGVRSPSLYNHVKGLQD 49 (72)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHhCCCc-ccHHHHHHHhCCCHHHHHHHCcCHHH
Confidence 344455566555422 34567899999999999999998754
No 113
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.76 E-value=32 Score=17.98 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhh
Q psy2123 37 HQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 37 ~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqN 77 (143)
..+.+|+-. +.+.+.+. .+||..+|++...|....+.
T Consensus 6 ~~~~iL~~L-~~~~~~s~---~eLa~~l~vS~~ti~r~i~~ 42 (63)
T d1biaa1 6 VPLKLIALL-ANGEFHSG---EQLGETLGMSRAAINKHIQT 42 (63)
T ss_dssp HHHHHHHHH-TTSSCBCH---HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHH-HHCCcCCH---HHHHHHHCcCHHHHHHHHHH
Confidence 345555533 55667664 47999999999998776653
No 114
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.96 E-value=47 Score=17.38 Aligned_cols=43 Identities=14% Similarity=0.068 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHH
Q psy2123 33 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWF 75 (143)
Q Consensus 33 ~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WF 75 (143)
.++.++...|++....-+--+...=+.||..+|-+..+|..=|
T Consensus 3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vgkt~~ev~~~~ 45 (59)
T d2cqqa1 3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKA 45 (59)
T ss_dssp CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999999877665555555678999987777766533
No 115
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=24.51 E-value=26 Score=18.37 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 40 NALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 40 ~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
+...+.|....+-. -....||..+|++...+...|.|+..-
T Consensus 13 ~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~~iY~~F~~k~~L 53 (68)
T d2id3a1 13 LAAGDALAADGFDA-LDLGEIARRAGVGKTTVYRRWGTPGGL 53 (68)
T ss_dssp HHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHhCccc-CCHHHHHHHHCcCHHHHHHHCcCHHHH
Confidence 34444455555432 236678999999999999999987543
No 116
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=24.44 E-value=13 Score=19.89 Aligned_cols=41 Identities=12% Similarity=0.311 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHH
Q psy2123 39 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80 (143)
Q Consensus 39 ~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~ 80 (143)
+..+...|....+-. .....||..+|++...+...|.++-.
T Consensus 12 ~~aa~~l~~~~G~~~-~sv~~Ia~~agvs~~t~Y~~F~~k~~ 52 (71)
T d2iu5a1 12 AKAFKDLMQSNAYHQ-ISVSDIMQTAKIRRQTFYNYFQNQEE 52 (71)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCGGGGGGTCSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCccccHHHHHcCCHHH
Confidence 456666677766533 34567899999999999999998654
No 117
>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
Probab=24.27 E-value=53 Score=21.09 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHH
Q psy2123 38 QLNALEKVFERTHYPDAFVREELAKKVCLSEARVQ 72 (143)
Q Consensus 38 q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~ 72 (143)
-+.+|...=+...|.+......||..+||+...|.
T Consensus 25 li~~L~~iQ~~~Gyip~~al~~iA~~l~v~~a~V~ 59 (178)
T d2fug21 25 IMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 59 (178)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHCCCHHHHH
Confidence 35556655566689999999999999999988765
No 118
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.10 E-value=59 Score=18.20 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChh
Q psy2123 30 NRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEA 69 (143)
Q Consensus 30 ~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~ 69 (143)
....+.+.++.+|+..+. .|+.+|...+++..
T Consensus 10 ~~~~l~~~~~~l~~~L~~--------wR~~~Ar~~d~~~~ 41 (96)
T d2hbka1 10 YQYNIPPEREVLVRELYQ--------WRDLIARRDDESPR 41 (96)
T ss_dssp SCSSCCGGGHHHHHHHHH--------HHHHHHHHHTCCHH
T ss_pred ccccCCHHHHHHHHHHHH--------HHHHHHHHhCCCce
Confidence 344678888888888863 67777777776654
No 119
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=24.06 E-value=26 Score=18.68 Aligned_cols=38 Identities=16% Similarity=0.360 Sum_probs=26.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHHHH
Q psy2123 43 EKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81 (143)
Q Consensus 43 ~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR~k 81 (143)
...|....+ ..-....||...|++...+...|.++..-
T Consensus 14 ~~l~~~~G~-~~~s~~~Ia~~agvs~~~iY~~F~sK~~L 51 (74)
T d2g7sa1 14 RTLIIRGGY-NSFSYADISQVVGIRNASIHHHFPSKSDL 51 (74)
T ss_dssp HHHHHHHCG-GGCCHHHHHHHHCCCHHHHHHHCSSHHHH
T ss_pred HHHHHHhCc-cccCHHHHHHHHCcCcchHHHHCcCHHHH
Confidence 334444443 22346678999999999999999987643
No 120
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=24.02 E-value=34 Score=20.50 Aligned_cols=41 Identities=5% Similarity=0.006 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHHHHHHhhHH
Q psy2123 34 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 34 ~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V~~WFqNrR 79 (143)
++.+.....-+.++.. . -..++|..++++...|..|++..+
T Consensus 17 Ls~dlR~rIv~~~~~G-~----s~r~iA~~~~VS~~tV~k~l~r~~ 57 (123)
T d1pdnc_ 17 LPNNIRLKIVEMAADG-I----RPCVISRQLRVSHGCVSKILNRYQ 57 (123)
T ss_dssp CCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-C----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5555555555556533 2 245789999999999999997433
No 121
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.95 E-value=51 Score=20.14 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHcCCChhHHHHHHhh
Q psy2123 51 YPDAFVREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 51 ~p~~~~~~~La~~lgl~~~~V~~WFqN 77 (143)
...+.....|...++++..+|+.||..
T Consensus 3 ~l~~~~~~~L~~~t~fs~~ei~~l~~~ 29 (181)
T d1bjfa_ 3 KLRPEVMQDLLESTDFTEHEIQEWYKG 29 (181)
T ss_dssp CCCHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 456677888999999999999988753
No 122
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=21.45 E-value=29 Score=20.68 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=16.7
Q ss_pred HHHHHHHcCCChhHHHHHHh
Q psy2123 57 REELAKKVCLSEARVQVWFQ 76 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFq 76 (143)
+.++|..+|++...|+.|=+
T Consensus 3 Ige~A~~~gvs~~TlR~Ye~ 22 (127)
T d1q06a_ 3 ISDVAKITGLTSKAIRFYEE 22 (127)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35789999999999999864
No 123
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.18 E-value=26 Score=18.03 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=17.0
Q ss_pred cCCCCHHHHHHHHHHcCCChhHHHHHH
Q psy2123 49 THYPDAFVREELAKKVCLSEARVQVWF 75 (143)
Q Consensus 49 ~~~p~~~~~~~La~~lgl~~~~V~~WF 75 (143)
..-|+ .++||..+|++...|..=+
T Consensus 29 gRePT---~~EiA~~l~~~~e~V~~~l 52 (57)
T d1l0oc_ 29 GRAPT---VTEIADHLGISPEDVVLAQ 52 (57)
T ss_dssp TSCCB---HHHHHHHHTSCHHHHHHHH
T ss_pred CCCCC---HHHHHHHHCcCHHHHHHHH
Confidence 33455 4578999999998876533
No 124
>d1aiha_ d.163.1.1 (A:) Integrase {Bacteriophage HP1 [TaxId: 10690]}
Probab=20.63 E-value=87 Score=18.87 Aligned_cols=40 Identities=8% Similarity=0.018 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCChhHH
Q psy2123 32 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARV 71 (143)
Q Consensus 32 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~La~~lgl~~~~V 71 (143)
.-++.+|+..|-+.......+.......|+..+|+-...|
T Consensus 5 ~~Lt~eEi~~l~~~~~~~~~~~~~~~i~l~~~tG~R~~E~ 44 (170)
T d1aiha_ 5 AFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEA 44 (170)
T ss_dssp CCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHH
T ss_pred cCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHCCchhhh
Confidence 3479999999988887777787777777787778765543
No 125
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=20.59 E-value=40 Score=20.19 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHcCCCh
Q psy2123 34 FNSHQLNALEKVFE-------RTHYPDAFVREELAKKVCLSE 68 (143)
Q Consensus 34 ~~~~q~~~L~~~f~-------~~~~p~~~~~~~La~~lgl~~ 68 (143)
++.+|+..|.+.|. .+.+.+..+...+...+|+..
T Consensus 1 Ls~eqi~~l~~~F~~fD~~~~~dG~I~~~el~~~l~~lG~~~ 42 (152)
T d1wdcc_ 1 LSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINP 42 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHhccCc
Confidence 46788888888774 223677777777777887654
No 126
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=20.42 E-value=73 Score=19.45 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHcCCCh-----hHHHHHHhhHHH
Q psy2123 51 YPDAFVREELAKKVCLSE-----ARVQVWFQNRRA 80 (143)
Q Consensus 51 ~p~~~~~~~La~~lgl~~-----~~V~~WFqNrR~ 80 (143)
-.+...|.+||.+||++. ....+|++..-.
T Consensus 80 DSSL~aRKeLA~EL~y~gd~~dSA~mNiwLhk~vm 114 (130)
T d2gqba1 80 DSSLSARKELAKELGYSGDMNDSASMNIWLHKQVM 114 (130)
T ss_dssp CCSHHHHHHHHHHHTCCCSSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 467889999999999873 357789975443
No 127
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=20.19 E-value=28 Score=19.39 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.3
Q ss_pred HHHHHHHcCCChhHHHHHHhhHH
Q psy2123 57 REELAKKVCLSEARVQVWFQNRR 79 (143)
Q Consensus 57 ~~~La~~lgl~~~~V~~WFqNrR 79 (143)
...||..+|++...|..|-.+++
T Consensus 28 q~~lA~~lgis~~~is~~E~g~~ 50 (87)
T d1lmb3_ 28 QESVADKMGMGQSGVGALFNGIN 50 (87)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHhCccHHHHHHHHhccC
Confidence 36789999999999999987654
No 128
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.11 E-value=50 Score=20.44 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHcCCChhHHHHHHhh
Q psy2123 50 HYPDAFVREELAKKVCLSEARVQVWFQN 77 (143)
Q Consensus 50 ~~p~~~~~~~La~~lgl~~~~V~~WFqN 77 (143)
....+.....|+..+.++...|+.||..
T Consensus 3 skl~~e~i~~l~~~t~fs~~Ei~~l~~~ 30 (187)
T d1g8ia_ 3 SKLKPEVVEELTRKTYFTEKEVQQWYKG 30 (187)
T ss_dssp CSCCHHHHHHHHHTSSSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3456677778888888899888888753
Done!