RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2123
(143 letters)
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 87.9 bits (218), Expect = 1e-24
Identities = 40/60 (66%), Positives = 47/60 (78%)
Query: 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87
+RNRT+F Q+ ALEK FERTHYPD F RE LA K+ L EAR+QVWF NRRAK+RR E+
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 85.3 bits (211), Expect = 1e-23
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 15 DDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVW 74
++ R+ R + HQ LEK F Y R E+A+ + L+E +V++W
Sbjct: 1 NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIW 60
Query: 75 FQNRRAKFRRNERN 88
FQNRR K ++ ++
Sbjct: 61 FQNRRMKMKKINKD 74
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 83.0 bits (205), Expect = 7e-23
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 26 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85
K R RT N QL+ L + PDA ++E+L + LS ++VWFQN+R K ++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Query: 86 ER 87
Sbjct: 62 SI 63
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 81.4 bits (201), Expect = 3e-22
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84
R T+ +Q LEK F Y R E+A + L+E ++++WFQNRR K+++
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 54
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 81.4 bits (201), Expect = 3e-22
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84
+ + F++ Q LEK FE Y R+ LAK + LSE +V+ WFQNRRAK+RR
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 80.3 bits (198), Expect = 7e-22
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84
R+ R ++ QL LE+ + + R +++ LSE ++ +WFQNRR K ++
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 80.8 bits (199), Expect = 1e-21
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 3 YDWMLTLRCDGEDDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAK 62
+DWM R + E P RT F + QL LEK F Y R E+A
Sbjct: 4 FDWMKVKRNPPKTAKVS-EPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAA 62
Query: 63 KVCLSEARVQVWFQNRRAKFRRNER 87
+ L+E +V++WFQNRR K ++ ER
Sbjct: 63 TLELNETQVKIWFQNRRMKQKKRER 87
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 80.0 bits (197), Expect = 1e-21
Identities = 37/62 (59%), Positives = 49/62 (79%)
Query: 26 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85
K RR+RTTF++ QL+ LE+ FERT YPD + REELA++ L+EAR+QVWFQNRRA+ R+
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 60
Query: 86 ER 87
Sbjct: 61 HT 62
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 77.8 bits (191), Expect = 2e-20
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVC---------------LSEARVQ 72
R +R T+ L +E F YPD REE+A ++ +V
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 73 VWFQNRRAKFRRNER 87
WF NRR + +R
Sbjct: 61 NWFANRRKEIKRRAN 75
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 75.8 bits (186), Expect = 5e-20
Identities = 34/59 (57%), Positives = 41/59 (69%)
Query: 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86
RR RT F S QL LE F+R YPD REE+A L+EARV+VWF+NRRAK+R+ E
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 60
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 75.3 bits (185), Expect = 8e-20
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 29 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAK 81
R RT F+S QL L++ F Y R++L+ ++ L+EA++++WFQN RAK
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 75.3 bits (185), Expect = 8e-20
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84
R+ RT F + QL ALE+ F + Y R E + + L+E +V++WFQNRRAK +R
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 75.3 bits (185), Expect = 8e-20
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 29 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84
R RT F QL LEK F + +Y R ELA ++ L E+ ++VWFQNRR K +R
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 75.4 bits (185), Expect = 9e-20
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 27 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86
PRR RTTF S Q+ LE+ F + Y A +L+ K+ L A+V++WF+NRR + +
Sbjct: 1 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 60
Query: 87 RN 88
Sbjct: 61 DQ 62
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 74.9 bits (184), Expect = 1e-19
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 29 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84
+ RTT + +ALE+ F P + +A+++ L + V+VWF NRR + +R
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 73.4 bits (180), Expect = 5e-19
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87
R+ R F+ Q+ LE+ F++ Y A RE LA + L+ +V++WFQN R K +R +
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
Query: 88 N 88
+
Sbjct: 63 D 63
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 73.1 bits (179), Expect = 6e-19
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 28 RRNRTTFNSHQLNALEKVFERT-HYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNE 86
T Q+ LE F + +PD +A + L+E + Q WF+ R A++RR+E
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 87 RN 88
Sbjct: 62 GL 63
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 72.7 bits (178), Expect = 9e-19
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 21 ERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRA 80
E +R RT+ + +LE +F + P +A ++ L + V+VWF NRR
Sbjct: 2 ETLVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQ 61
Query: 81 KFRR 84
K +R
Sbjct: 62 KGKR 65
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 70.7 bits (173), Expect = 4e-18
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83
+++ + LE+VF R ++ +EE+AKK ++ +V+VWF N+R + +
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 70.8 bits (173), Expect = 6e-18
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 25 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84
K R+ R F Q LE+ F + Y A RE LA + L+ +V++WFQN R K +R
Sbjct: 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 66
Query: 85 NER 87
+
Sbjct: 67 AQN 69
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 70.4 bits (172), Expect = 9e-18
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 28 RRNRTTFNSHQLNALEKVFE---RTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84
RR R FN L + F YP +EELAKK ++ ++V WF N+R ++++
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 85 NERNFISHRNL 95
N F N+
Sbjct: 62 NIGKFQEEANI 72
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 69.4 bits (170), Expect = 2e-17
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 28 RRNRTTFNSHQLNALEKVFERTH---YPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84
+ R H N + + YP ++++A + L+ +V WF N R + +
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 68.7 bits (168), Expect = 2e-17
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRR 79
R F Q L +F+ P ++ +++++ L + V +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 68.6 bits (168), Expect = 2e-17
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 36 SHQLNALEKVF-ERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRN 85
+ LEKVF T +PD E L+K++ +Q WF+ RR + + +
Sbjct: 2 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 52
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 67.9 bits (166), Expect = 5e-17
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 29 RNRTTFNSHQLNALEKVFER-THYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83
++ + LEKVF T YPD + L+K++ S ++Q WF++RR + +
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 66.6 bits (162), Expect = 4e-16
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 24 KPKPRRNRTTFNSHQLNALEKVFER----THYPDAFVREELAKKVCLSEARVQVWFQNRR 79
+R RT F + Q + ER D E+ + + +++W N +
Sbjct: 14 GGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNK 73
Query: 80 AKFRR 84
Sbjct: 74 NSGPS 78
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 65.5 bits (159), Expect = 7e-16
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 26 KPRRNRTTFNSHQLNALEKVFERT-HYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84
R+RT + L L+ YPD L+ ++ L + + +FQN+R +
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65
Query: 85 N 85
+
Sbjct: 66 S 66
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 64.6 bits (157), Expect = 1e-15
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84
RT+ ++ ALEK F P + +A+++ + + ++VWF NRR K +R
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 65.2 bits (158), Expect = 1e-15
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 21/78 (26%)
Query: 31 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKV---------------------CLSEA 69
R + L + +ER P RE L ++ ++E
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 70 RVQVWFQNRRAKFRRNER 87
RV WF NRR + +
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 64.0 bits (156), Expect = 2e-15
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 28 RRNRTTFNSHQLNALEKVFE---RTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRR 84
R +R F + LE F Y D E L K LS +++ W NRR K +
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 55.1 bits (132), Expect = 9e-12
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 24 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFR 83
P+ + +T + QL L+ F + L + L+ + WF ++
Sbjct: 4 TPQKFKEKT---AEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKA 60
Query: 84 RNER 87
E
Sbjct: 61 LKEE 64
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 51.7 bits (123), Expect = 2e-10
Identities = 9/66 (13%), Positives = 21/66 (31%)
Query: 28 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVWFQNRRAKFRRNER 87
+ QL L+ F + + ++L + L + WF + R + +
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63
Query: 88 NFISHR 93
+
Sbjct: 64 KWFRDN 69
>d2i71a1 e.72.1.1 (A:1-377) Hypothetical protein SSO1389 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 377
Score = 26.0 bits (57), Expect = 1.6
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 34 FNSHQLNALEKVFERTHYPDA--FVREELAK--KVCLSEARVQVWFQNRRAKFRRNERNF 89
+ L+ L E + E+ K K + R + + ++R
Sbjct: 283 SGNVDLDTLRHYAETYADKVTRAIIENEVDKIEKYQMGSERKLLGEYMKVEGKGFDKRIL 342
Query: 90 ISHRNLDA 97
+H L
Sbjct: 343 YAHGGLPY 350
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Length = 54
Score = 23.6 bits (51), Expect = 3.3
Identities = 4/38 (10%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 41 ALEKVFE--RTHYPDAFVREELAKKVCLSEARVQVWFQ 76
+ + + + E+++++ S+ +Q F+
Sbjct: 4 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFK 41
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 54
Score = 23.4 bits (51), Expect = 3.8
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 38 QLNALEKVFE--RTHYPDAFVREELAKKVCLSEARVQVWFQ 76
Q + + H + +A K S+ +Q F+
Sbjct: 1 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFK 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.419
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 562,909
Number of extensions: 24011
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 39
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)