BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2128
         (89 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX
          WITH Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 43/49 (87%)

Query: 13 AVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKG 61
          A+ FLKDF AGGV+AA++KTA APIERVKL+LQVQH +KQI  +++YKG
Sbjct: 4  ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKG 52


>pdb|2X7Y|A Chain A, P450 Bm3 F87a In Complex With Dmso
 pdb|2X7Y|B Chain B, P450 Bm3 F87a In Complex With Dmso
 pdb|2X80|A Chain A, P450 Bm3 F87a In Complex With Dmso
 pdb|2X80|B Chain B, P450 Bm3 F87a In Complex With Dmso
          Length = 455

 Score = 25.8 bits (55), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 8  KNFSNAVEFLKDFAAGGVSAA 28
          KN S A++F++DFA  G++ +
Sbjct: 69 KNLSQALKFVRDFAGDGLATS 89


>pdb|3DGI|A Chain A, Crystal Structure Of F87aT268A MUTANT OF CYP BM3
 pdb|3DGI|B Chain B, Crystal Structure Of F87aT268A MUTANT OF CYP BM3
          Length = 461

 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 8  KNFSNAVEFLKDFAAGGVSAA 28
          KN S A++F++DFA  G++ +
Sbjct: 69 KNLSQALKFVRDFAGDGLATS 89


>pdb|3VNY|A Chain A, Crystal Structure Of Beta-Glucuronidase From
          Acidobacterium Capsulatum
 pdb|3VNZ|A Chain A, Crystal Structure Of Beta-Glucuronidase From
          Acidobacterium Capsulatum In Complex With D-Glucuronic
          Acid
 pdb|3VO0|A Chain A, Crystal Structure Of Beta-Glucuronidase From
          Acidobacterium Capsulatum Covalent-Bonded With
          2-Deoxy-2-Fluoro-D-Glucuronic Acid
          Length = 488

 Score = 25.8 bits (55), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 20 FAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKGQTLDSQIQGRQSSFEKA 78
          FA GG++   ++T ++P+ RV L +    +   IP D  Y G + +       + F  A
Sbjct: 3  FARGGLAQTASQTTSSPV-RVGLSVDASALGHTIPPD--YTGLSYEQAQMANPNYFSGA 58


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,413,561
Number of Sequences: 62578
Number of extensions: 74470
Number of successful extensions: 181
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 7
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 45 (21.9 bits)