Query psy2128
Match_columns 89
No_of_seqs 256 out of 1434
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 16:44:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 99.8 2.9E-19 1E-23 118.0 5.6 77 12-88 3-86 (297)
2 2lck_A Mitochondrial uncouplin 99.8 2.6E-19 9E-24 118.7 3.5 76 13-88 199-274 (303)
3 1okc_A ADP, ATP carrier protei 99.7 1.6E-18 5.4E-23 114.5 2.9 74 15-88 111-189 (297)
4 2lck_A Mitochondrial uncouplin 99.7 1.6E-18 5.3E-23 114.9 2.1 75 14-88 102-180 (303)
5 2a3d_A Protein (de novo three- 33.7 23 0.00078 17.7 1.6 15 35-49 9-23 (73)
6 3i71_A Ethanolamine utilizatio 28.1 29 0.00099 17.5 1.4 27 19-45 14-40 (68)
7 2kdu_B MUNC13-1, protein UNC-1 26.7 24 0.00083 15.9 0.8 11 39-49 12-22 (36)
8 2z5i_I TM, tropomyosin alpha-1 19.0 51 0.0018 15.1 1.2 12 36-47 4-15 (40)
9 4b19_A PEPA1; toxin, toxin apo 16.5 12 0.00041 16.2 -1.3 20 19-38 6-25 (30)
10 1bts_A BAND 3 anion transport 13.8 97 0.0033 12.6 2.5 21 17-37 4-25 (26)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.77 E-value=2.9e-19 Score=117.99 Aligned_cols=77 Identities=39% Similarity=0.429 Sum_probs=62.0
Q ss_pred CchhHHHHHHHHHHHHHhHhhhcchHHHHHHHHHhcccccC-------CCccccccccccccccccccccchhhhhhhhh
Q psy2128 12 NAVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQ-------IPEDQRYKGQTLDSQIQGRQSSFEKALLYKIQ 84 (89)
Q Consensus 12 ~~~~~~~~~~ag~~ag~~~~~~~~P~d~vKtr~Q~~~~~~~-------~~~~~~~~~i~~~eG~~gly~G~~~~~~r~~~ 84 (89)
+..+.+.++++|++||+++.++++|+|+||+|+|++..... .+..+..+.++++||++|||||+.++++|++|
T Consensus 3 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 82 (297)
T 1okc_A 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHH
Confidence 45678899999999999999999999999999999864211 11222334555669999999999999999999
Q ss_pred cccc
Q psy2128 85 DFGV 88 (89)
Q Consensus 85 ~~g~ 88 (89)
+.++
T Consensus 83 ~~~~ 86 (297)
T 1okc_A 83 TQAL 86 (297)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.76 E-value=2.6e-19 Score=118.66 Aligned_cols=76 Identities=9% Similarity=-0.041 Sum_probs=63.3
Q ss_pred chhHHHHHHHHHHHHHhHhhhcchHHHHHHHHHhcccccCCCccccccccccccccccccccchhhhhhhhhcccc
Q psy2128 13 AVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKGQTLDSQIQGRQSSFEKALLYKIQDFGV 88 (89)
Q Consensus 13 ~~~~~~~~~ag~~ag~~~~~~~~P~d~vKtr~Q~~~~~~~~~~~~~~~~i~~~eG~~gly~G~~~~~~r~~~~~g~ 88 (89)
+.+...++++|++||++++++++|+|+||+|||++......+..+..+.++++||++|||||+.|+++|.+|..++
T Consensus 199 ~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i 274 (303)
T 2lck_A 199 TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVV 274 (303)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHH
Confidence 3456778999999999999999999999999999864332234456667777899999999999999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.72 E-value=1.6e-18 Score=114.47 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHhHhhhcchHHHHHHHHHhccccc-----CCCccccccccccccccccccccchhhhhhhhhcccc
Q psy2128 15 EFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINK-----QIPEDQRYKGQTLDSQIQGRQSSFEKALLYKIQDFGV 88 (89)
Q Consensus 15 ~~~~~~~ag~~ag~~~~~~~~P~d~vKtr~Q~~~~~~-----~~~~~~~~~~i~~~eG~~gly~G~~~~~~r~~~~~g~ 88 (89)
+....+++|++||+++.++++|+|+||+|+|++.... ..+..+..+.++++||++|||||+.|+++|++|+.++
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 189 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAA 189 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHH
Confidence 4577899999999999999999999999999985321 1122334556667799999999999999999998764
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.71 E-value=1.6e-18 Score=114.95 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHhHhhhcchHHHHHHHHHhcccc----cCCCccccccccccccccccccccchhhhhhhhhcccc
Q psy2128 14 VEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHIN----KQIPEDQRYKGQTLDSQIQGRQSSFEKALLYKIQDFGV 88 (89)
Q Consensus 14 ~~~~~~~~ag~~ag~~~~~~~~P~d~vKtr~Q~~~~~----~~~~~~~~~~~i~~~eG~~gly~G~~~~~~r~~~~~g~ 88 (89)
.+....+++|++||+++.++++|+|+||+|+|++... ...+.....+.++++||++|||||+.|+++|++|+.++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 180 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHH
Confidence 5678899999999999999999999999999998642 11122344556777799999999999999999998765
No 5
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=33.74 E-value=23 Score=17.71 Aligned_cols=15 Identities=20% Similarity=0.069 Sum_probs=11.2
Q ss_pred chHHHHHHHHHhccc
Q psy2128 35 APIERVKLILQVQHI 49 (89)
Q Consensus 35 ~P~d~vKtr~Q~~~~ 49 (89)
.-+..||||+|.-+.
T Consensus 9 qrlaaiktrlqalgg 23 (73)
T 2a3d_A 9 QRLAAIKTRLQALGG 23 (73)
T ss_dssp HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 346679999998654
No 6
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=28.07 E-value=29 Score=17.46 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhHhhhcchHHHHHHHHH
Q psy2128 19 DFAAGGVSAAVAKTATAPIERVKLILQ 45 (89)
Q Consensus 19 ~~~ag~~ag~~~~~~~~P~d~vKtr~Q 45 (89)
.+--|+.+|=+++-+-.|+|..|..+.
T Consensus 14 s~~QGMTaGEVAA~f~w~Le~ar~aLe 40 (68)
T 3i71_A 14 SVRQGMTAGEVAAHFGWPLEKARNALE 40 (68)
T ss_dssp HCTTCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHhccccHHHHHHHhCCcHHHHHHHHH
Confidence 333478889999999999999998873
No 7
>2kdu_B MUNC13-1, protein UNC-13 homolog A; calmodulin, calcium, acetylation, methylation, alternative splicing, cell junction, cell membrane, coiled coil; NMR {Xenopus laevis}
Probab=26.67 E-value=24 Score=15.85 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=7.9
Q ss_pred HHHHHHHhccc
Q psy2128 39 RVKLILQVQHI 49 (89)
Q Consensus 39 ~vKtr~Q~~~~ 49 (89)
+-|+|+|.+..
T Consensus 12 ~nKVR~qlqe~ 22 (36)
T 2kdu_B 12 FNKVRMQLQEA 22 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 34888998854
No 8
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=18.97 E-value=51 Score=15.06 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=9.2
Q ss_pred hHHHHHHHHHhc
Q psy2128 36 PIERVKLILQVQ 47 (89)
Q Consensus 36 P~d~vKtr~Q~~ 47 (89)
-+|.||-+||.-
T Consensus 4 ~MdAIKKKMq~l 15 (40)
T 2z5i_I 4 SMDAIKKKMQML 15 (40)
T ss_dssp -CHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 478999999864
No 9
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=16.52 E-value=12 Score=16.16 Aligned_cols=20 Identities=10% Similarity=-0.062 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhHhhhcchHH
Q psy2128 19 DFAAGGVSAAVAKTATAPIE 38 (89)
Q Consensus 19 ~~~ag~~ag~~~~~~~~P~d 38 (89)
+.++-.++|++-+++++-++
T Consensus 6 ~iia~visGcivalF~hWL~ 25 (30)
T 4b19_A 6 HIIAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp SSTTTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34556778888888877665
No 10
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=13.83 E-value=97 Score=12.63 Aligned_cols=21 Identities=5% Similarity=-0.051 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhHhhh-cchH
Q psy2128 17 LKDFAAGGVSAAVAKTA-TAPI 37 (89)
Q Consensus 17 ~~~~~ag~~ag~~~~~~-~~P~ 37 (89)
.+.+++.+++|++-+++ .+|+
T Consensus 4 ~E~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 4 SELLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHhcccC
Confidence 34566777777764433 3443
Done!