RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2128
(89 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane
protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos
taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 79.6 bits (197), Expect = 8e-20
Identities = 34/49 (69%), Positives = 43/49 (87%)
Query: 13 AVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKG 61
A+ FLKDF AGGV+AA++KTA APIERVKL+LQVQH +KQI +++YKG
Sbjct: 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKG 52
Score = 31.1 bits (71), Expect = 0.023
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 16 FLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKG 61
+ + AVA + P + V+ + +Q K D Y G
Sbjct: 209 IIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKG--ADIMYTG 252
Score = 28.0 bits (63), Expect = 0.29
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 16 FLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKG 61
F + A+GG + A + P++ + L + + + G
Sbjct: 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKGAAQREFTG 155
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 34.2 bits (79), Expect = 0.002
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 19 DFAAGGVSAAVAKTATAPIERVKLILQVQ---HINKQIPEDQRYKG 61
F G +A +A T P++ K+ LQ+Q + +Y+G
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRG 49
Score = 32.3 bits (74), Expect = 0.010
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 4 DGGKKNFSNAVE---FLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYK 60
D K+ ++ E AG + A+A P + VK+ Q Q + +RY+
Sbjct: 89 DSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA---RAGGGRRYQ 145
Query: 61 G 61
Sbjct: 146 S 146
Score = 24.6 bits (54), Expect = 5.6
Identities = 5/42 (11%), Positives = 12/42 (28%), Gaps = 7/42 (16%)
Query: 20 FAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKG 61
F + + +P++ VK + + Y
Sbjct: 206 FTSAFGAGFCTTVIASPVDVVKTRYMNSALGQ-------YHS 240
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.15
Identities = 6/72 (8%), Positives = 18/72 (25%), Gaps = 21/72 (29%)
Query: 8 KNFSNAVEFL-------------KDFAAGGVSAAVAKTATAP--------IERVKLILQV 46
+ A+ L + ++ P + + ++ V
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 47 QHINKQIPEDQR 58
N +P ++
Sbjct: 354 NKTNSHLPAGKQ 365
Score = 25.8 bits (56), Expect = 2.6
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 18/73 (24%)
Query: 15 EFLKDFAAGGVSAAVAKTATAPIERVKLILQ-VQHINKQIPEDQRYKGQTLDSQIQGRQS 73
+F K A T P E L+ + + +++ + +
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAE---LVGKFLGYVSSLVEPSK--------------VG 78
Query: 74 SFEKALLYKIQDF 86
F++ L + +F
Sbjct: 79 QFDQVLNLCLTEF 91
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 27.5 bits (62), Expect = 0.55
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 13 AVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINK----QIPEDQ 57
A L++ A+G V + + + + +NK + D+
Sbjct: 380 ACYLLQELASGEVLQDRVSSGDLGSFVTPIDITAEKVNKTIGFNLSNDE 428
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 27.5 bits (61), Expect = 0.62
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 3 EDGGKKNFSNAVEFLKDFAAGGVSAAVAKTATA 35
+GG +++ + D +G + A K A
Sbjct: 622 ANGGNVSYNTPEALVADCGSGALHPADLKAAVL 654
Score = 24.4 bits (53), Expect = 6.5
Identities = 4/33 (12%), Positives = 10/33 (30%)
Query: 3 EDGGKKNFSNAVEFLKDFAAGGVSAAVAKTATA 35
++ + + F + VS K+
Sbjct: 299 ATIDGTTYATYEDLEQAFVSDEVSEDALKSCLI 331
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 25.5 bits (56), Expect = 2.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 3 EDGGKKNFSNAVEFLKDFAAGGVSAAVAKTATA 35
+ GG K ++ V+ KDFAA V K +
Sbjct: 282 KWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVE 314
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH;
2'O-methyltransferase, knot, montreal- kingston
bacterial structural genomics initiative, BSGI; 2.5A
{Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Length = 253
Score = 24.9 bits (55), Expect = 3.5
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 18 KDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQI 53
KD +A ++A K A E V LI +V ++ + +
Sbjct: 138 KDRSAQ-LNATAKKVACGAAESVPLI-RVTNLARTM 171
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 25.1 bits (55), Expect = 3.7
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 3 EDGGKKNFSNAVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQR 58
+ GG + + E F +S K A +L+ ++ E Q
Sbjct: 295 KFGGPITYKSFEEMKLAFKEEKLSPPDLKIGVA-DAINELLEPIRQEFANNKEFQE 349
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 24.3 bits (53), Expect = 6.2
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 3 EDGGKKNFSNAVEFLKDFAAGGVSAAVAKTATA 35
+ GG +++ E +D+ G + K A A
Sbjct: 299 KYGGPVEYTSYEELERDYTDGRLHPLDLKNAVA 331
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 23.8 bits (52), Expect = 9.6
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 3 EDGGKKNFSNAVEFLKDFAAGGVSAAVAKTATA 35
+ GG +++ E +DF +G + K A A
Sbjct: 273 KFGGDVEYASFEELAEDFKSGQLHPLDLKIAVA 305
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.357
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,273,974
Number of extensions: 61466
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 24
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (23.6 bits)