RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2128
         (89 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
          heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 70.5 bits (171), Expect = 9e-17
 Identities = 34/50 (68%), Positives = 43/50 (86%)

Query: 12 NAVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKG 61
           A+ FLKDF AGGV+AA++KTA APIERVKL+LQVQH +KQI  +++YKG
Sbjct: 2  QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKG 51


>d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate
          deacetylase, NagA, catalytic domain {Thermotoga
          maritima [TaxId: 2336]}
          Length = 288

 Score = 26.0 bits (55), Expect = 0.68
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 2  GEDGGKKNFSNAVEFLKDFAAGGVSAAVAKTATAPIERVKLILQ 45
          G  G      +  E  +   + GV+  +A T +  +E++K IL+
Sbjct: 9  GVVGADTMNCDFSEMEEFLYSQGVTTFLATTVSTSLEKMKEILR 52


>d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic
          domain {Escherichia coli [TaxId: 562]}
          Length = 284

 Score = 24.0 bits (50), Expect = 3.0
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 2/41 (4%)

Query: 1  MGEDGGKKNFS--NAVEFLKDFAAGGVSAAVAKTATAPIER 39
          +   GG+   +       L      GV++ V    T  I R
Sbjct: 9  LIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISR 49


>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease,
           catalytic domain {Bacillus pasteurii [TaxId: 1474]}
          Length = 390

 Score = 23.5 bits (51), Expect = 4.6
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 22/56 (39%)

Query: 38  ERVKLILQVQHINKQIPED-----QRYKGQTL-----------------DSQIQGR 71
           E + +++   H+ + IPED      R + +T+                 D+   GR
Sbjct: 183 EHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGR 238


>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
           catalytic domain {Helicobacter pylori [TaxId: 210]}
          Length = 389

 Score = 22.7 bits (49), Expect = 9.7
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 8/51 (15%)

Query: 38  ERVKLILQVQHINKQIPEDQRYKGQTLDSQIQGRQSSFEKALLYKIQDFGV 88
           E + +++   H +K I ED ++     DS+I+ +  + E  L     D G 
Sbjct: 182 EHMDMLMVCHHKDKSIKEDVQF----ADSRIRPQTIAAEDTL----HDMGA 224


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.357 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 296,745
Number of extensions: 10594
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 5
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 47 (22.0 bits)