Query psy2129
Match_columns 498
No_of_seqs 290 out of 1875
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 16:45:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0654|consensus 100.0 4.7E-42 1E-46 350.7 14.3 260 186-496 89-351 (359)
2 COG5024 Cyclin [Cell division 100.0 2.8E-41 6.2E-46 353.3 15.6 254 189-493 170-424 (440)
3 KOG0653|consensus 100.0 2E-40 4.4E-45 348.3 20.5 252 191-492 118-372 (391)
4 KOG0655|consensus 100.0 8.5E-37 1.8E-41 302.5 16.8 215 199-469 112-337 (408)
5 KOG0656|consensus 100.0 2.4E-32 5.3E-37 277.2 19.3 215 197-461 42-268 (335)
6 PF00134 Cyclin_N: Cyclin, N-t 99.9 7.7E-25 1.7E-29 193.7 11.3 127 202-376 1-127 (127)
7 TIGR00569 ccl1 cyclin ccl1. Un 99.9 1.1E-21 2.3E-26 199.6 19.6 155 281-437 57-222 (305)
8 KOG0834|consensus 99.8 3.6E-21 7.9E-26 195.8 12.4 189 280-470 39-248 (323)
9 PF02984 Cyclin_C: Cyclin, C-t 99.8 1.6E-20 3.4E-25 163.4 10.6 118 378-496 1-118 (118)
10 KOG0835|consensus 99.8 1.5E-18 3.2E-23 173.2 17.0 186 282-469 25-231 (367)
11 KOG0794|consensus 99.8 1.9E-18 4.1E-23 165.2 13.4 194 283-479 44-250 (264)
12 COG5333 CCL1 Cdk activating ki 99.7 1.2E-17 2.5E-22 166.8 13.3 161 280-443 45-213 (297)
13 PRK00423 tfb transcription ini 99.7 6.7E-16 1.4E-20 158.2 20.8 178 285-467 127-304 (310)
14 KOG1597|consensus 99.5 5.9E-13 1.3E-17 132.1 17.6 180 284-468 108-289 (308)
15 COG1405 SUA7 Transcription ini 99.4 8.9E-12 1.9E-16 125.9 18.4 176 287-467 104-279 (285)
16 cd00043 CYCLIN Cyclin box fold 99.4 8.4E-13 1.8E-17 107.3 7.5 87 232-368 2-88 (88)
17 KOG2496|consensus 99.3 1E-11 2.2E-16 123.7 13.7 136 295-432 73-219 (325)
18 smart00385 CYCLIN domain prese 99.3 5E-12 1.1E-16 101.8 6.8 78 290-369 6-83 (83)
19 smart00385 CYCLIN domain prese 98.8 4.5E-08 9.8E-13 78.5 9.2 81 382-464 1-82 (83)
20 cd00043 CYCLIN Cyclin box fold 98.7 2.2E-07 4.7E-12 75.2 10.4 85 377-463 2-87 (88)
21 PF08613 Cyclin: Cyclin; Inte 98.2 6.1E-06 1.3E-10 76.1 8.8 94 235-375 54-149 (149)
22 KOG1598|consensus 97.9 4.7E-05 1E-09 81.9 9.6 174 287-466 74-253 (521)
23 KOG0834|consensus 97.6 0.00016 3.5E-09 74.5 8.2 147 229-375 36-249 (323)
24 PF00382 TFIIB: Transcription 97.6 0.00025 5.4E-09 57.0 6.8 65 287-352 1-65 (71)
25 PRK00423 tfb transcription ini 97.3 0.0041 8.9E-08 64.2 14.2 140 233-375 123-308 (310)
26 PF00382 TFIIB: Transcription 97.3 0.0021 4.6E-08 51.6 9.1 71 384-456 1-71 (71)
27 KOG4164|consensus 97.1 0.00039 8.5E-09 72.2 3.8 93 294-387 396-490 (497)
28 TIGR00569 ccl1 cyclin ccl1. Un 97.0 0.0062 1.3E-07 62.7 11.5 64 226-289 46-115 (305)
29 KOG0655|consensus 96.9 0.00082 1.8E-08 68.6 4.3 34 280-313 145-178 (408)
30 KOG0656|consensus 96.2 0.0045 9.8E-08 64.1 4.2 34 280-313 78-111 (335)
31 KOG0835|consensus 96.0 0.062 1.4E-06 55.2 11.0 62 228-289 19-80 (367)
32 KOG0653|consensus 95.8 0.0089 1.9E-07 63.6 4.1 36 279-314 157-192 (391)
33 PF00134 Cyclin_N: Cyclin, N-t 95.5 0.019 4.1E-07 50.3 4.6 36 278-313 29-64 (127)
34 KOG1674|consensus 92.6 0.29 6.3E-06 48.1 6.5 102 236-378 79-181 (218)
35 KOG1675|consensus 92.5 0.18 3.8E-06 51.5 4.8 77 303-380 213-291 (343)
36 COG5333 CCL1 Cdk activating ki 92.4 0.32 6.8E-06 49.8 6.5 62 229-290 42-103 (297)
37 COG5024 Cyclin [Cell division 92.0 0.12 2.5E-06 55.8 3.1 37 278-314 211-247 (440)
38 COG1405 SUA7 Transcription ini 89.3 3 6.5E-05 42.7 10.4 87 379-467 99-185 (285)
39 PF02984 Cyclin_C: Cyclin, C-t 89.2 1.3 2.9E-05 37.7 6.8 74 297-372 17-90 (118)
40 KOG1597|consensus 87.2 4.8 0.0001 41.2 10.0 87 381-469 108-194 (308)
41 KOG0794|consensus 86.0 1.4 3.1E-05 43.5 5.4 77 235-312 44-120 (264)
42 PF08613 Cyclin: Cyclin; Inte 72.3 48 0.0011 30.3 10.6 88 377-464 51-142 (149)
43 KOG4557|consensus 69.5 1.2E+02 0.0025 30.1 12.7 173 287-471 3-185 (262)
44 KOG0654|consensus 64.4 4 8.7E-05 43.1 1.9 34 280-313 137-170 (359)
45 PF01857 RB_B: Retinoblastoma- 49.4 49 0.0011 30.2 6.1 64 286-350 17-82 (135)
46 KOG1598|consensus 47.5 1.2E+02 0.0026 33.7 9.7 57 299-356 185-244 (521)
47 PF12550 GCR1_C: Transcription 43.2 1.1E+02 0.0023 25.2 6.7 69 190-263 5-80 (81)
48 cd04441 DEP_2_DEP6 DEP (Dishev 26.6 56 0.0012 27.5 2.5 31 232-263 35-65 (85)
49 cd04443 DEP_GPR155 DEP (Dishev 22.6 76 0.0017 26.4 2.6 30 232-262 33-62 (83)
50 cd04439 DEP_1_P-Rex DEP (Dishe 22.1 66 0.0014 26.7 2.1 30 232-262 31-60 (81)
51 cd04442 DEP_1_DEP6 DEP (Dishev 20.6 77 0.0017 26.4 2.2 29 233-262 32-60 (82)
No 1
>KOG0654|consensus
Probab=100.00 E-value=4.7e-42 Score=350.68 Aligned_cols=260 Identities=41% Similarity=0.604 Sum_probs=250.0
Q ss_pred hhhhhccCCchhhhHHHHHHHHHHHHHh-hCCCcccccc-CCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q psy2129 186 VEDMVCMLINADDYRDDIYQYLLKCERR-IRPKANYMRK-QNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRF 263 (498)
Q Consensus 186 ~~~~~~~~~~~~eY~~di~~~l~~~E~~-~~p~~~y~~~-q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRf 263 (498)
.+..+.++..+..|+.+|++|++..|.+ .+|.++||+. |.++++.||.++|||+++|.+++++..+++|+++++.|||
T Consensus 89 ~ds~~~dp~~c~~~~~~I~~~~r~~ei~~~rp~~~~~e~vq~d~t~smrgilvdwlvevsee~r~~~e~l~ls~~~~drf 168 (359)
T KOG0654|consen 89 IDSVGEDPQMCLKIAAKIYNTLRVSDIKSERPLPSKFEFVQADITPSMRGILVDWLVEVSEEYRLTFETLYLSVNYRDRF 168 (359)
T ss_pred hhhcccchHHHHHHHHHHhhcccccchhhccCcccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhheeecHHHHHHH
Confidence 3345668889999999999999999999 9999999996 9999999999999999999999999999999999999999
Q ss_pred hhhhhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCC
Q psy2129 264 LSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPE 343 (498)
Q Consensus 264 Ls~~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~ 343 (498)
|+...+ .+.++|++|++|++||+|+||+.+|.
T Consensus 169 l~~~~~------------------------------------------------~~~k~ql~g~s~m~I~sk~ee~~~~~ 200 (359)
T KOG0654|consen 169 LSYKEV------------------------------------------------NKQKLQLVGISAMLIASKYEEIKEPR 200 (359)
T ss_pred hccCcc------------------------------------------------HHHHHHHhCcccceeeccchhhcchH
Confidence 999988 89999999999999999999999999
Q ss_pred hhHHHhhcccccCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCC-CchhHHHHHHHHHHHHhhcCccccCCChHH
Q psy2129 344 VNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGH-LDQSVLYLAQYLSELALVSGDPFLQFLPSL 422 (498)
Q Consensus 344 l~dlv~i~~~~yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~-~~~~i~~lA~~llelsL~d~~~fl~y~PS~ 422 (498)
+.+|++++++.|+..++..||..||..|.|++..||...|+..|+.... ...+++.++.|++|++++++. |+.|.||.
T Consensus 201 ~~ef~~itd~ty~~~qv~~~~~~il~~l~~~~~~pt~~~~l~~~~~~~~~~~~~~e~~~~yl~elsll~~~-~l~y~PSl 279 (359)
T KOG0654|consen 201 VEEFCYITDNTYTYWQVLRMEIDILNALTFELVRPTSKTFLRRFLRVAQTPELQVEPLANYLTELSLLDYI-FLKYLPSL 279 (359)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHhCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhHH-HhccChHH
Confidence 9999999999999999999999999999999999999999999977654 677899999999999999999 99999999
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHhCCCHHHHHHHHHHHHHHHHhCCCCchhHHHHhhCCCccCceeecCCC
Q psy2129 423 IACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEAR 496 (498)
Q Consensus 423 IAaAaL~LA~~~l~~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~~~~~~~~~~~I~~KY~~~k~~~VS~~~~~ 496 (498)
|||||+++|+.+++ .+.|++.|+..|||+.+++++|+..|+ ++.++++...++|++||+.+||+.||.+++|
T Consensus 280 iAasAv~lA~~~~~-~~pW~~~L~~~T~y~~edl~~~v~~L~-~~l~~~~~~l~air~ky~~~k~~~Va~~~~p 351 (359)
T KOG0654|consen 280 IAASAVFLARLTLD-FHPWNQTLEDYTGYKAEDLKPCVLDLH-LYLNASGTDLPAIREKYKQSKFKEVALLPVP 351 (359)
T ss_pred HHHHHHHHHHhhcc-CCCCchhhHHhhcccHHHHHHHHHHHh-cccCCCCCchHHHHHHhhhhhhhhhhccCCC
Confidence 99999999999999 999999999999999999999999999 9999999999999999999999999999987
No 2
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.8e-41 Score=353.27 Aligned_cols=254 Identities=34% Similarity=0.522 Sum_probs=244.3
Q ss_pred hhccCCchhhhHHHHHHHHHHHHHhhCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh
Q psy2129 189 MVCMLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMS 268 (498)
Q Consensus 189 ~~~~~~~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~ 268 (498)
...|+.++.||+.+|+.||+++|..+.|.+.||.+|+.+..+||++|+|||+|||..|++.++|+|+||++|||||+...
T Consensus 170 ~~~d~~mv~Ey~~~Ife~l~k~e~~~lp~~~yl~kq~~~~~~mR~~Lv~wlvevH~~F~llpeTL~lainiiDrfLs~~~ 249 (440)
T COG5024 170 DQEDPLMVPEYASDIFEYLLKLELIDLPNPNYLIKQSLYEWSMRSILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSRV 249 (440)
T ss_pred cccCccchHHHHHHHHHHHHHHHHHhcCcHHHHhhcchhHHhHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhccCc
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHH
Q psy2129 269 VVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFV 348 (498)
Q Consensus 269 v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv 348 (498)
+ .-.++||+|++|||||||+||+++|.+++|+
T Consensus 250 v------------------------------------------------~l~k~QLvg~s~LfIa~K~EE~~~p~i~~l~ 281 (440)
T COG5024 250 V------------------------------------------------SLEKYQLVGISALFIASKYEEVNCPSIKDLV 281 (440)
T ss_pred c------------------------------------------------cHHHHHHHHHHHHHHHHhHhHhcCHHHHHHH
Confidence 8 8899999999999999999999999999999
Q ss_pred hhcccccCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHH
Q psy2129 349 YITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAI 428 (498)
Q Consensus 349 ~i~~~~yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL 428 (498)
+++++.|+.++|+++|+.+|.+|+|++..|+|..||+++.+..+.+...+.++.|+++.++.++. |++++||.+|+||.
T Consensus 282 ~~t~g~~t~~~i~~aE~~ml~~l~f~is~P~P~sFLRriSka~dyd~~srt~~k~~~e~s~~~~~-f~~~~~S~~~aaa~ 360 (440)
T COG5024 282 YATDGAFTRDDIIRAERYMLEVLDFNISWPSPMSFLRRISKASDYDIFSRTPAKFSSEISPVDYK-FIQISPSWCAAAAM 360 (440)
T ss_pred HHHcccccHHHHHHHHHHHhhhcccccCCCChHHHHHHHHhhcccchhhhhhHhhhCCchHhhhh-hccCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHcCCCCCChhhHHHHhC-CCHHHHHHHHHHHHHHHHhCCCCchhHHHHhhCCCccCceeec
Q psy2129 429 ALARYCLDYKEAWPSSLADITG-HSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTV 493 (498)
Q Consensus 429 ~LA~~~l~~~~~W~~~L~~~tg-yt~~~I~~c~~~L~~l~~~~~~~~~~~I~~KY~~~k~~~VS~~ 493 (498)
++|+.+++ ...|...|..++| |+..++.++...+.+.+.++..+. .+++.||...+|+.+|.+
T Consensus 361 ~~s~~~~~-~~~w~~~l~~ySg~y~~~~l~~~~~~~~~~l~~~~~~~-~~i~~Ky~~~~~~~~s~~ 424 (440)
T COG5024 361 YLSRKILS-QNQWDRTLIHYSGNYTNPDLKPLNESNKENLQNPSVHH-DAIFPKYPSPTFGKASSP 424 (440)
T ss_pred HHHHhhhc-cCCCCccccccCCCCCchhHHHHHHHHHHHhcccchhh-hhhhhccccccccccchH
Confidence 99999999 7779999999999 999999999999999888877655 999999999999998864
No 3
>KOG0653|consensus
Probab=100.00 E-value=2e-40 Score=348.33 Aligned_cols=252 Identities=37% Similarity=0.582 Sum_probs=233.1
Q ss_pred ccCCchhhhHHHHHHHHHHHHHhhCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhh
Q psy2129 191 CMLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVV 270 (498)
Q Consensus 191 ~~~~~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~ 270 (498)
.++..+.+|.+|||.|++..|..+.|. .|+..+++++.+||.++||||++||..|++.+|||||||+++||||+...+
T Consensus 118 ~~~~~~~ey~~di~~~l~~~e~~~~p~-~~~~~~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~v- 195 (391)
T KOG0653|consen 118 SDPSMIVEYVQDIFEYLRQLELEFLPL-SYDISQSEIRAKMRAILVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVKV- 195 (391)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhCch-hhhcccccccHHHHHHHHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhcc-
Confidence 456678899999999999999767775 566889999999999999999999999999999999999999999999888
Q ss_pred cchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhh-hhhcccccCCCChhHHHh
Q psy2129 271 RSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALF-VASKYEEIYPPEVNEFVY 349 (498)
Q Consensus 271 ~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~-IAsK~EE~~pp~l~dlv~ 349 (498)
.+.++||+|++||| ||||+||..+|.++++++
T Consensus 196 -----------------------------------------------~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~ 228 (391)
T KOG0653|consen 196 -----------------------------------------------PLKKLQLVGVSALLSIACKYEEISLPSVEDLVL 228 (391)
T ss_pred -----------------------------------------------cHHHhhHHhHHHHHHHHHhhhhccCCccceeEe
Confidence 99999999999976 999999999999999999
Q ss_pred hcccccCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHH
Q psy2129 350 ITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIA 429 (498)
Q Consensus 350 i~~~~yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~ 429 (498)
++++.|+.++|++||+.||++|+|++.+|+|+.||++|++....+.+.+.+++|++|++++|+. ++.++||.+|+|+++
T Consensus 229 isd~~~s~~~il~mE~~il~~L~f~l~~p~~~~FLrr~~ka~~~d~~~~~~~k~~~El~l~d~~-~~~~~~s~~aaa~~~ 307 (391)
T KOG0653|consen 229 ITDGAYSREEILRMEKYILNVLEFDLSVPTPLSFLRRFLKAADYDIKTRTLVKYLLELSLCDYS-MLSIPPSSSAAASFT 307 (391)
T ss_pred eeCCccchHHHHHHHHHHHhccCeeecCCchHHHHHHHHHhhhcchhHHHHHHHHHHHHHhhhH-HhccCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999899999999999999999999 999999999999999
Q ss_pred HHHHHcCCCCCChhhHHHHhCCCHHHHHHHHHHHHHHHHhCC-CCchhH-HHHhhCCCccCceee
Q psy2129 430 LARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGE-AASQKA-AYNKYKLNLWKNVST 492 (498)
Q Consensus 430 LA~~~l~~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~~~~~-~~~~~~-I~~KY~~~k~~~VS~ 492 (498)
+++.+...+..|...+...+||+..++.+|...+........ .+..+. ++.||.++++..++.
T Consensus 308 ~~~~~~~~~~~w~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ky~~~~~~~~~~ 372 (391)
T KOG0653|consen 308 LALRMLSKGDVWSPTLEHYSGYSESYLFECARSLSALSLSSLQNPSLRASVLNKYNSSKFLPASP 372 (391)
T ss_pred HHHHHhccCCccCCCCeeccCCCcHHHHHHHHHHHHHHHHhcccchhHHHHHHHhcccccchhhh
Confidence 999999833369999999999999999999999999665543 334554 999999999999885
No 4
>KOG0655|consensus
Probab=100.00 E-value=8.5e-37 Score=302.48 Aligned_cols=215 Identities=33% Similarity=0.586 Sum_probs=190.3
Q ss_pred hHHHHHHHHHHHHHhhCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhcc
Q psy2129 199 YRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLG 278 (498)
Q Consensus 199 Y~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~ 278 (498)
-..+.+..|..+|..+.-...++.+||++.++||++|+|||+|||+.|+|.+||||||+-||||||....-
T Consensus 112 n~~eVW~lM~kkee~~l~~~~~l~qHpdlqp~mRaILlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~~~--------- 182 (408)
T KOG0655|consen 112 NSKEVWLLMLKKEERYLRDKHFLEQHPDLQPQMRAILLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQVE--------- 182 (408)
T ss_pred CHHHHHHHHHccchhhhhhhHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---------
Confidence 35789999999999888778889999999999999999999999999999999999999999999877632
Q ss_pred chhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHH
Q psy2129 279 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKK 358 (498)
Q Consensus 279 ~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~ 358 (498)
+...++||||+||||||+|+||+|||++.+|.+++++.++.+
T Consensus 183 --------------------------------------v~kt~lQLIGitsLFIAAK~EEIYpPKl~eFAyvTDgAcs~d 224 (408)
T KOG0655|consen 183 --------------------------------------VSKTNLQLIGITSLFIAAKLEEIYPPKLIEFAYVTDGACSED 224 (408)
T ss_pred --------------------------------------hhhhhHHHhhHHHHHHHHHHhhccCccccceeeeccCccchH
Confidence 388999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCchh-----------HHHHHHHHHHHHhhcCccccCCChHHHHHHH
Q psy2129 359 QLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQS-----------VLYLAQYLSELALVSGDPFLQFLPSLIACSA 427 (498)
Q Consensus 359 eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~-----------i~~lA~~llelsL~d~~~fl~y~PS~IAaAa 427 (498)
+|+.||..||+.|+|++.+.|...||..|++..+.+.. ..--...|+++|+++.+ .+.|+.++|||||
T Consensus 225 dIltmE~iilkal~W~l~PiTii~WL~vylQv~~~n~~~k~l~Pq~~~~efiqiaqlLDlc~ldid-s~~fsYrilaAAa 303 (408)
T KOG0655|consen 225 DILTMELIILKALKWELSPITIISWLNVYLQVDALNDAPKVLLPQYSQEEFIQIAQLLDLCILDID-SLEFSYRILAAAA 303 (408)
T ss_pred HHHHHHHHHHHHhcccccceehHHHHHHHHHHHhcCCCCceeccccchHHHHHHHHHHHHHHhccc-cccchHHHHHHHH
Confidence 99999999999999999999999999999997654321 12123358999999999 9999999999999
Q ss_pred HHHHHHHcCCCCCChhhHHHHhCCCHHHHHHHHHHHHHHHHh
Q psy2129 428 IALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRK 469 (498)
Q Consensus 428 L~LA~~~l~~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~~~ 469 (498)
|+.-.. .+.+...+|+.+.+|.+|+++|.-++..
T Consensus 304 l~h~~s--------~e~v~kaSG~~w~~ie~cv~wm~Pf~rv 337 (408)
T KOG0655|consen 304 LCHFTS--------IEVVKKASGLEWDSIEECVDWMVPFVRV 337 (408)
T ss_pred HHHHhH--------HHHHHHcccccHHHHHHHHHHHHHHHHH
Confidence 985321 3456788999999999999999877653
No 5
>KOG0656|consensus
Probab=100.00 E-value=2.4e-32 Score=277.17 Aligned_cols=215 Identities=31% Similarity=0.441 Sum_probs=182.7
Q ss_pred hhhHHHHHHHHHHHHHhhCCCccccc-cCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhh
Q psy2129 197 DDYRDDIYQYLLKCERRIRPKANYMR-KQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQ 275 (498)
Q Consensus 197 ~eY~~di~~~l~~~E~~~~p~~~y~~-~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~q 275 (498)
.-+.++++..|.+.|.++.|..+|.. .|..+++.||..++|||.+|++++++++++++||+|||||||+...+
T Consensus 42 ~~~~e~~i~~ll~kEe~~~p~~~~~~~~~~~~~~~~R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l------ 115 (335)
T KOG0656|consen 42 LLWDERVLANLLEKEEQHNPSLDYFLCVQKLILSSMRKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKL------ 115 (335)
T ss_pred ccccHHHHHHHHHHHHHhCCCCchhhhcccccccHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhccccc------
Confidence 35678899999999999999987444 67789999999999999999999999999999999999999999988
Q ss_pred hccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchh---hhhhhhhhhhhhhcccccCCCChhHH-Hhhc
Q psy2129 276 LLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSK---LQLLGTTALFVASKYEEIYPPEVNEF-VYIT 351 (498)
Q Consensus 276 l~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~---lqLva~aCL~IAsK~EE~~pp~l~dl-v~i~ 351 (498)
++.+ +||+|+|||+||||+||+..|.+.|+ +..+
T Consensus 116 ------------------------------------------~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~ 153 (335)
T KOG0656|consen 116 ------------------------------------------PKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYT 153 (335)
T ss_pred ------------------------------------------CCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhccc
Confidence 5666 99999999999999999976666665 5678
Q ss_pred ccccCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCch----hHHHHHHHHHHHHhhcCccccCCChHHHHHHH
Q psy2129 352 DDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQ----SVLYLAQYLSELALVSGDPFLQFLPSLIACSA 427 (498)
Q Consensus 352 ~~~yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~----~i~~lA~~llelsL~d~~~fl~y~PS~IAaAa 427 (498)
++.+.++.|.+||..||.+|+|+++.+||++|+.+|+..++... .+..-+.-++-.+..+.. |+.|+||+||+|+
T Consensus 154 ~~~feaktI~rmELLVLstL~Wrl~aVTP~sF~~~fl~ki~~~~~~~~~~~~~~s~~ll~~~~d~~-Fl~y~pSviAaa~ 232 (335)
T KOG0656|consen 154 DNVFEAKTIQRMELLVLSTLKWRLRAVTPFSFIDHFLSKISQKDHNKHLFLKHASLFLLSVITDIK-FLEYPPSVIAAAA 232 (335)
T ss_pred cccccHHHHHHHHHHHHhhccccccCCCchHHHHHHHHHcCcccchHHHHHHHHHHHHHHHhhhhh-hhcCChHHHHHHH
Confidence 99999999999999999999999999999999999999988743 334445556667788888 9999999999999
Q ss_pred HHHHHHHcCCCCCCh---hhHHHHhCCCHHHHHHHHH
Q psy2129 428 IALARYCLDYKEAWP---SSLADITGHSLDSLTECVK 461 (498)
Q Consensus 428 L~LA~~~l~~~~~W~---~~L~~~tgyt~~~I~~c~~ 461 (498)
+.++...+. .-.|. ..+..+.+.+.+.+..|+.
T Consensus 233 ~~~v~~~~~-~l~~~~~~~~~~~~~~l~~e~~~~~~~ 268 (335)
T KOG0656|consen 233 ILSVSASVD-GLDFREYENNLLSLLSLSKEKVNRCYD 268 (335)
T ss_pred HHHHHHhhc-chhhhhhhHHHHHHHHhhHHhhhcchh
Confidence 887777665 33333 3455566677777777777
No 6
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.92 E-value=7.7e-25 Score=193.69 Aligned_cols=127 Identities=50% Similarity=0.851 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhhCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchh
Q psy2129 202 DIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTA 281 (498)
Q Consensus 202 di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~ 281 (498)
||+.+|++.|.+..|.+.|++.+++++..+|..+++||.+++..++++++|+|+|+.|+|||+....+
T Consensus 1 ~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~~------------ 68 (127)
T PF00134_consen 1 DIFRYLLEKELKYKPNPDYLEQQPEITPEMRQIIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKRPV------------ 68 (127)
T ss_dssp HHHHHHHHHHHHTTCCTTHGTGTSSHHHHHHHHHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS-T------------
T ss_pred CHHHHHHHHHHHHCcCccccccChhcCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccc------------
Confidence 79999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHH
Q psy2129 282 LFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLL 361 (498)
Q Consensus 282 l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~ 361 (498)
.+.+++++|++||+||+|++|..+|.+.+++.++++.|++++|.
T Consensus 69 ------------------------------------~~~~~~li~~~cl~lA~K~~e~~~~~~~~~~~~~~~~~~~~~i~ 112 (127)
T PF00134_consen 69 ------------------------------------NRSKLQLIALACLFLASKMEEDNPPSISDLIRISDNTFTKKDIL 112 (127)
T ss_dssp ------------------------------------TCCGHHHHHHHHHHHHHHHHTSS--HHHHHHHHTTTSSHHHHHH
T ss_pred ------------------------------------ccchhhhhhhhHHHHhhhhhccccchHHHHHHHHcCCCCHHHHH
Confidence 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcc
Q psy2129 362 KMETLILKVLNFDLN 376 (498)
Q Consensus 362 ~mE~~IL~~L~fdL~ 376 (498)
+||+.||.+|+|+++
T Consensus 113 ~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 113 EMEREILSALNFDLN 127 (127)
T ss_dssp HHHHHHHHHTTT---
T ss_pred HHHHHHHHHCCCCcC
Confidence 999999999999985
No 7
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=99.88 E-value=1.1e-21 Score=199.62 Aligned_cols=155 Identities=23% Similarity=0.292 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccc--cC
Q psy2129 281 ALFVASIIEVAEEYK--MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDT--YT 356 (498)
Q Consensus 281 ~l~va~i~ev~~~l~--L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~--yt 356 (498)
.-+...|.++|.+|+ |+..|++||+.||+||+..+++...+.++||+||||||||+||. +.++.+++...... ..
T Consensus 57 ~~y~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv~~~~p~~Ia~tclfLA~KvEE~-~~si~~fv~~~~~~~~~~ 135 (305)
T TIGR00569 57 KYYEKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSVMEYHPKIIMLTCVFLACKVEEF-NVSIDQFVGNLKETPLKA 135 (305)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCchhhcCHHHHHHHHHHHHHhcccc-CcCHHHHHhhccCCchhh
Confidence 334566788999999 99999999999999999999999999999999999999999998 56899998765443 35
Q ss_pred HHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCC-------CchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHH
Q psy2129 357 KKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGH-------LDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIA 429 (498)
Q Consensus 357 ~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~-------~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~ 429 (498)
.++|++||..||+.|+|++.+++|+.+|..|+..+. ..+.+...|+.++..++...- ++.|+||.||+|||+
T Consensus 136 ~~~Il~~E~~lL~~L~F~L~V~hPyr~L~~~l~dl~~~l~~~~~~~~l~q~a~~~lndsl~Td~-~L~y~Ps~IAlAAI~ 214 (305)
T TIGR00569 136 LEQVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDIKTRLPGLENPEYLRKHADKFLNRTLLTDA-YLLYTPSQIALAAIL 214 (305)
T ss_pred HHHHHHHHHHHHHHCCCcEEeeCccHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCc-eecCCHHHHHHHHHH
Confidence 699999999999999999999999999999885322 224466778777777777776 888999999999999
Q ss_pred HHHHHcCC
Q psy2129 430 LARYCLDY 437 (498)
Q Consensus 430 LA~~~l~~ 437 (498)
+|...++.
T Consensus 215 lA~~~~~~ 222 (305)
T TIGR00569 215 HTASRAGL 222 (305)
T ss_pred HHHHHhCC
Confidence 99998873
No 8
>KOG0834|consensus
Probab=99.85 E-value=3.6e-21 Score=195.83 Aligned_cols=189 Identities=21% Similarity=0.239 Sum_probs=165.9
Q ss_pred hhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccC---
Q psy2129 280 TALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYT--- 356 (498)
Q Consensus 280 r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt--- 356 (498)
|.....+|++++.+||++..|+.+|+.||+||+...++.....+.+|++|||||+|+||. |.+++|++..+...+.
T Consensus 39 r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~sclfLAgKvEet-p~kl~dIi~~s~~~~~~~~ 117 (323)
T KOG0834|consen 39 RQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAASCLFLAGKVEET-PRKLEDIIKVSYRYLNPKD 117 (323)
T ss_pred HHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHHHHHHHHhhcccC-cccHHHHHHHHHHHcCccc
Confidence 667789999999999999999999999999999999999999999999999999999998 9999999876543333
Q ss_pred ----------HHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCchh----HHHHHHHHHHHHhhcCccccCCChHH
Q psy2129 357 ----------KKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQS----VLYLAQYLSELALVSGDPFLQFLPSL 422 (498)
Q Consensus 357 ----------~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~----i~~lA~~llelsL~d~~~fl~y~PS~ 422 (498)
++.|+..|..||++|+||+++-+|+.||..|++.++.... +..+|+.++.-++...- .++|.|..
T Consensus 118 ~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~~~~~~~a~~Aw~~~nD~~~t~~-cL~y~p~~ 196 (323)
T KOG0834|consen 118 LELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADENLKQPLAQAAWNFVNDSLRTTL-CLQYSPHS 196 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhhhccccHHHHHHHHhchhheeee-eEeecCcE
Confidence 4679999999999999999999999999999999887664 78899999999999886 99999999
Q ss_pred HHHHHHHHHHHHcCCC-CCChhh-HHHHhC--CCHHHHHHHHHHHHHHHHhC
Q psy2129 423 IACSAIALARYCLDYK-EAWPSS-LADITG--HSLDSLTECVKCLHEVHRKG 470 (498)
Q Consensus 423 IAaAaL~LA~~~l~~~-~~W~~~-L~~~tg--yt~~~I~~c~~~L~~l~~~~ 470 (498)
||+|||++|....++. +.|... ..+.++ .+.++|.++...+..+|...
T Consensus 197 IAva~i~lA~~~~~~~~~~~~~~~w~~~~d~~vt~e~l~~i~~~~l~~y~~~ 248 (323)
T KOG0834|consen 197 IAVACIHLAAKLLGVELPSDTDKRWWREFDETVTNELLDDICHEFLDLYEQT 248 (323)
T ss_pred EEeehhhHHHHHcCCCCCCCcccchhhhhcccCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999998851 222222 345566 89999999999999998653
No 9
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=99.83 E-value=1.6e-20 Score=163.41 Aligned_cols=118 Identities=36% Similarity=0.556 Sum_probs=106.9
Q ss_pred cchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCCChhhHHHHhCCCHHHHH
Q psy2129 378 PTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLT 457 (498)
Q Consensus 378 pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~W~~~L~~~tgyt~~~I~ 457 (498)
|||++||++|++..+.+..+..+++|++|+++++.. |++|+||+||+||+++|+.+++..+.|+..|..++|++.++|.
T Consensus 1 PTp~~Fl~~~~~~~~~~~~~~~~a~~l~el~l~~~~-fl~~~PS~iAaAai~lA~~~~~~~~~~~~~l~~~t~~~~~~l~ 79 (118)
T PF02984_consen 1 PTPYDFLRRFLKISNADQEVRNLARYLLELSLLDYE-FLQYPPSVIAAAAILLARKILGKEPPWPESLEKLTGYDKEDLK 79 (118)
T ss_dssp --HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHSHH-HTTS-HHHHHHHHHHHHHHHHHSSTCSHHHHHHHHTS-HHHHH
T ss_pred CcHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhcc-ccCCCHHHHHHHHHHHHHHHhCccccCCccchhhcCCCHHHHH
Confidence 899999999988878888999999999999999999 9999999999999999999998447999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHhhCCCccCceeecCCC
Q psy2129 458 ECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEAR 496 (498)
Q Consensus 458 ~c~~~L~~l~~~~~~~~~~~I~~KY~~~k~~~VS~~~~~ 496 (498)
+|+..|.+++.+......++|++||++.+|++||.++||
T Consensus 80 ~c~~~i~~~~~~~~~~~~~ai~~Kys~~~~~~vs~~~~~ 118 (118)
T PF02984_consen 80 ECIELIQELLSKASNSKLQAIRKKYSSQKFSSVSQIPPP 118 (118)
T ss_dssp HHHHHHHHHHHHCCGSSCTHHHHHTTSGGGTTGGGSS--
T ss_pred HHHHHHHHHHHhcCCccchHHHHHhCccccCCccCCCCC
Confidence 999999999998887889999999999999999999998
No 10
>KOG0835|consensus
Probab=99.80 E-value=1.5e-18 Score=173.19 Aligned_cols=186 Identities=21% Similarity=0.261 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccc-------
Q psy2129 282 LFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDT------- 354 (498)
Q Consensus 282 l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~------- 354 (498)
+=..||++.|--|+|+..+.+++..+|.||+..+++.+.++..+++||++||||+||. |..+++++.+.+..
T Consensus 25 LG~e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v~~~~e~vv~ACv~LASKiEE~-Prr~rdVinVFh~L~~r~~~~ 103 (367)
T KOG0835|consen 25 LGCELIQEAGILLNLPQVAMATGQVLFQRFCYSKSFVRHDFEIVVMACVLLASKIEEE-PRRIRDVINVFHYLEQRRESE 103 (367)
T ss_pred HhHHHHHhhhHhhcCcHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHhhhccc-cccHhHHHHHHHHHHHHHhcc
Confidence 3457899999999999999999999999999999999999999999999999999998 88888876653210
Q ss_pred ------------cCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCchh--HHHHHHHHHHHHhhcCccccCCCh
Q psy2129 355 ------------YTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQS--VLYLAQYLSELALVSGDPFLQFLP 420 (498)
Q Consensus 355 ------------yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~--i~~lA~~llelsL~d~~~fl~y~P 420 (498)
-.+.+++++|..||+.|+|++++.+|+.++-.|++.++.... +.+.+|-++..++-..- |..|+|
T Consensus 104 ~~~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~~~~~~~l~Q~~wNfmNDslRT~v-~vry~p 182 (367)
T KOG0835|consen 104 AAEHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQLPPNLKLLQAAWNFMNDSLRTDV-FVRYSP 182 (367)
T ss_pred CcchhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhcCCCchhHHHHHHHhhhhccccce-eeecCH
Confidence 124578999999999999999999999999999999987654 58899999999999887 999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCChhhHHHHhCCCHHHHHHHHHHHHHHHHh
Q psy2129 421 SLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRK 469 (498)
Q Consensus 421 S~IAaAaL~LA~~~l~~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~~~ 469 (498)
+.|||||+++|.+.+++.-+..+.+..+++.+..+|.++...+..+|..
T Consensus 183 e~iACaciyLaAR~~eIpLp~~P~Wf~~Fd~~k~eid~ic~~l~~lY~~ 231 (367)
T KOG0835|consen 183 ESIACACIYLAARNLEIPLPFQPHWFKAFDTTKREIDEICYRLIPLYKR 231 (367)
T ss_pred HHHHHHHHHHHHhhhcCCCCCCccHHHHcCCcHHHHHHHHHHHHHHHHh
Confidence 9999999999999988533333455678899999999988888888877
No 11
>KOG0794|consensus
Probab=99.78 E-value=1.9e-18 Score=165.23 Aligned_cols=194 Identities=20% Similarity=0.228 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhc-----------
Q psy2129 283 FVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYIT----------- 351 (498)
Q Consensus 283 ~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~----------- 351 (498)
+-..|+.+++++++.+.+++||+.||.||+.+.++..-.+.++|.||++||||+||.....++-++..+
T Consensus 44 ~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S~k~~~p~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L~~~f~~~~ 123 (264)
T KOG0794|consen 44 MANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKSLKEIEPRLLAPTCLYLACKVEECPIVHIRLLVNEAKVLKTRFSYWP 123 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcccch
Confidence 345578899999999999999999999999999999999999999999999999998423333333211
Q ss_pred -ccccCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCC-chhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHH
Q psy2129 352 -DDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHL-DQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIA 429 (498)
Q Consensus 352 -~~~yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~-~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~ 429 (498)
...|...+|.+||..+|+.|++-|.+-+|+.-|..+++..|. +.+..++++.+.+.++...- .+-|+|..||.|||+
T Consensus 124 e~~~~~~~~I~e~Ef~llE~Ld~~LIVhHPYrsL~q~~qd~gi~d~~~l~~~W~ivNDSyr~Dl-~Ll~PPh~IalAcl~ 202 (264)
T KOG0794|consen 124 EKFPYERKDILEMEFYLLEALDCYLIVHHPYRSLLQFVQDMGINDQKLLQLAWSIVNDSYRMDL-CLLYPPHQIALACLY 202 (264)
T ss_pred hhcCCCcCcchhhhhhHHhhhceeEEEecCCccHHHHHHHhcccchhhhhhhHhhhcchhhcce-eeecCHHHHHHHHHH
Confidence 234667899999999999999999999999999999999888 56689999999999988776 899999999999999
Q ss_pred HHHHHcCCCCCChhhHHHHhCCCHHHHHHHHHHHHHHHHhCCCCchhHHH
Q psy2129 430 LARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAY 479 (498)
Q Consensus 430 LA~~~l~~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~~~~~~~~~~~I~ 479 (498)
+|+...+ ... +...-.-...+.+.+.+|++.|.++|..-..-..+.|+
T Consensus 203 Ia~~~~~-k~~-~~~w~~el~vD~ekV~~~v~~I~~lYe~wk~~~E~~v~ 250 (264)
T KOG0794|consen 203 IACVIDE-KDI-PKAWFAELSVDMEKVKDIVQEILKLYELWKIFDEKKVK 250 (264)
T ss_pred HHHhhcC-CCh-HHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999887 332 22233445789999999999999998764433333333
No 12
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=99.74 E-value=1.2e-17 Score=166.77 Aligned_cols=161 Identities=21% Similarity=0.287 Sum_probs=140.7
Q ss_pred hhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhccc------
Q psy2129 280 TALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDD------ 353 (498)
Q Consensus 280 r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~------ 353 (498)
+--+..+|+.+|.+++++..++.||+.+|+||+..+++....++-|+.||++||||+||. |..+.-.....++
T Consensus 45 ~i~~~k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~sv~e~~~~~vv~tcv~LA~K~ed~-~~~I~i~~~~~~~~~se~~ 123 (297)
T COG5333 45 VIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLACKVEDT-PRDISIESFEARDLWSEEP 123 (297)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcccccccHHHHHHhheeeeeecccc-cchhhHHHHHhhccccccc
Confidence 445668999999999999999999999999999999999999999999999999999997 4444444444332
Q ss_pred ccCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCchh--HHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHH
Q psy2129 354 TYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQS--VLYLAQYLSELALVSGDPFLQFLPSLIACSAIALA 431 (498)
Q Consensus 354 ~yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~--i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA 431 (498)
.-+++.|..+|..||+.|+|++.+.+|+.++..|+..+..... ..++|+-++..++.... ++.|+|..||+||+.+|
T Consensus 124 ~~sr~~Il~~E~~lLEaL~fd~~V~hPy~~l~~f~~~~q~~~~~~~~~~aw~~inDa~~t~~-~llypphiIA~a~l~ia 202 (297)
T COG5333 124 KSSRERILEYEFELLEALDFDLHVHHPYKYLEGFLKDLQEKDKYKLLQIAWKIINDALRTDL-CLLYPPHIIALAALLIA 202 (297)
T ss_pred cccHHHHHHHHHHHHHHcccceEeccccHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhcee-eeecChHHHHHHHHHHH
Confidence 2367899999999999999999999999999999988665544 88999999999999987 99999999999999999
Q ss_pred HHHcCCCCCChh
Q psy2129 432 RYCLDYKEAWPS 443 (498)
Q Consensus 432 ~~~l~~~~~W~~ 443 (498)
+..++ .+.|..
T Consensus 203 ~~~~~-~~~~~~ 213 (297)
T COG5333 203 CEVLG-MPIIKL 213 (297)
T ss_pred HHhcC-Cccchh
Confidence 99998 777764
No 13
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=99.71 E-value=6.7e-16 Score=158.23 Aligned_cols=178 Identities=16% Similarity=0.144 Sum_probs=163.1
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHHHH
Q psy2129 285 ASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKME 364 (498)
Q Consensus 285 a~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~mE 364 (498)
.-|.++|..|+||..+..+|..+|++++....+.......++++|||+|||.++. |.+++|+..+++ .++++|.+.+
T Consensus 127 ~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~~~-prtl~eI~~~~~--v~~k~i~~~~ 203 (310)
T PRK00423 127 SELDRIASQLGLPRSVREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRCKV-PRTLDEIAEVSR--VSRKEIGRCY 203 (310)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHcCC-CcCHHHHHHHhC--CCHHHHHHHH
Confidence 3466788999999999999999999999998888889999999999999999887 899999999876 7899999999
Q ss_pred HHHHHHcCCCccccchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCCChhh
Q psy2129 365 TLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSS 444 (498)
Q Consensus 365 ~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~W~~~ 444 (498)
+.|++.|++++...+|.+|+..|+..++++..+...|.+++..+.-... ..+.+|..|||||||+|....+ .+.-...
T Consensus 204 ~~l~k~L~~~~~~~~p~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~~l-~~Gr~P~sIAAAaIYlA~~~~g-~~~t~ke 281 (310)
T PRK00423 204 RFLLRELNLKLPPTDPIDYVPRFASELGLSGEVQKKAIEILQKAKEKGL-TSGKGPTGLAAAAIYIASLLLG-ERRTQRE 281 (310)
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-ccCCCHHHHHHHHHHHHHHHhC-CCCCHHH
Confidence 9999999999999999999999999999999999999999988776554 7899999999999999999998 6667788
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHH
Q psy2129 445 LADITGHSLDSLTECVKCLHEVH 467 (498)
Q Consensus 445 L~~~tgyt~~~I~~c~~~L~~l~ 467 (498)
+...+|.+..+|+..++.|.+.+
T Consensus 282 Ia~v~~Vs~~tI~~~ykel~~~l 304 (310)
T PRK00423 282 VAEVAGVTEVTVRNRYKELAEKL 304 (310)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHh
Confidence 89999999999999999998753
No 14
>KOG1597|consensus
Probab=99.51 E-value=5.9e-13 Score=132.06 Aligned_cols=180 Identities=16% Similarity=0.155 Sum_probs=163.7
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHHH
Q psy2129 284 VASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKM 363 (498)
Q Consensus 284 va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~m 363 (498)
...|..++++++|+......|-.+|+++...+.......+-+++|||+|||+.++. |.+++++..+++ .+++||-+.
T Consensus 108 ~~~I~~m~d~~~Lp~~I~d~A~~ifk~v~~~k~lrGks~eai~AAclyiACRq~~~-pRT~kEI~~~an--v~kKEIgr~ 184 (308)
T KOG1597|consen 108 FKEITAMCDRLSLPATIKDRANEIFKLVEDSKLLRGKSVEALAAACLYIACRQEDV-PRTFKEISAVAN--VSKKEIGRC 184 (308)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHhhhhcCccHHHHHHHHHHHHHHhcCC-CchHHHHHHHHc--CCHHHHHHH
Confidence 34577899999999999999999999999988889999999999999999998887 999999999988 899999999
Q ss_pred HHHHHHHcCCCccccc--hhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCCC
Q psy2129 364 ETLILKVLNFDLNIPT--VHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAW 441 (498)
Q Consensus 364 E~~IL~~L~fdL~~pT--p~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~W 441 (498)
-+.|++.|.-.+...+ .-+|+.+|+..++++..+...|..+.+.+-.-.. ..+-.|-.||||+||++..+.. .+..
T Consensus 185 ~K~i~~~l~~s~~~~s~~t~~~m~RFCs~L~L~~~~q~aA~e~a~ka~~~~~-~~gRsPiSIAAa~IYmisqls~-~kkt 262 (308)
T KOG1597|consen 185 VKLIGEALETSVDLISISTGDFMPRFCSNLGLPKSAQEAATEIAEKAEEMDI-RAGRSPISIAAAAIYMISQLSD-EKKT 262 (308)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc-ccCCCchhHHHHHHHHHHHhcc-Cccc
Confidence 9999999988776665 8899999999999999999999999988765554 6678999999999999999999 8888
Q ss_pred hhhHHHHhCCCHHHHHHHHHHHHHHHH
Q psy2129 442 PSSLADITGHSLDSLTECVKCLHEVHR 468 (498)
Q Consensus 442 ~~~L~~~tgyt~~~I~~c~~~L~~l~~ 468 (498)
...+...+|+++..|+..+++|+....
T Consensus 263 ~keI~~vtgVaE~TIr~sYK~Lyp~~~ 289 (308)
T KOG1597|consen 263 QKEIGEVTGVAEVTIRNSYKDLYPHAD 289 (308)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhchh
Confidence 899999999999999999999987543
No 15
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=99.41 E-value=8.9e-12 Score=125.90 Aligned_cols=176 Identities=15% Similarity=0.158 Sum_probs=163.2
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHHHHHH
Q psy2129 287 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETL 366 (498)
Q Consensus 287 i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~mE~~ 366 (498)
+..++..+++|..+..+|+.++.+.+...-+.....+-++++|+|+||+.... |.++.++..+.+ .++++|.++.+.
T Consensus 104 l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~rGRsie~v~AA~iY~acR~~~~-prtl~eIa~a~~--V~~kei~rtyr~ 180 (285)
T COG1405 104 LERIASALGLPESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRINGV-PRTLDEIAKALG--VSKKEIGRTYRL 180 (285)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhhcCCCcCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHHHHHHHHH
Confidence 34456778889999999999999999999999999999999999999999887 999999998887 788999999999
Q ss_pred HHHHcCCCccccchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCCChhhHH
Q psy2129 367 ILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLA 446 (498)
Q Consensus 367 IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~W~~~L~ 446 (498)
+...|+-.+....|.+|+.+|...+++++.+...|..|+..+.-... ..+-.|+.||+||+|+|..+.+ ....+....
T Consensus 181 ~~~~L~l~~~~~~p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~g~-~~Gk~P~glAaaaiy~as~l~~-~~~tq~eva 258 (285)
T COG1405 181 LVRELKLKIPPVDPSDYIPRFASKLGLSDEVRRKAIEIVKKAKRAGL-TAGKSPAGLAAAAIYLASLLLG-ERRTQKEVA 258 (285)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc-ccCCCchhHHHHHHHHHHHHhC-CchHHHHHH
Confidence 99999999999999999999999999999999999999999998887 7899999999999999999999 777888999
Q ss_pred HHhCCCHHHHHHHHHHHHHHH
Q psy2129 447 DITGHSLDSLTECVKCLHEVH 467 (498)
Q Consensus 447 ~~tgyt~~~I~~c~~~L~~l~ 467 (498)
.++|.++..|++-+++|.+..
T Consensus 259 ~v~~vtevTIrnrykel~~~~ 279 (285)
T COG1405 259 KVAGVTEVTIRNRYKELADAL 279 (285)
T ss_pred HHhCCeeeHHHHHHHHHHHhh
Confidence 999999999999998887753
No 16
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=99.39 E-value=8.4e-13 Score=107.34 Aligned_cols=87 Identities=40% Similarity=0.618 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy2129 232 RSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRF 311 (498)
Q Consensus 232 R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRf 311 (498)
|..+++||.+++..+++++++.++|+.++|||+....+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------------------ 39 (88)
T cd00043 2 RPTPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSV------------------------------------------ 39 (88)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc------------------------------------------
Confidence 55677777777777777777777777777777776655
Q ss_pred hhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHHHHHHHH
Q psy2129 312 LSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLIL 368 (498)
Q Consensus 312 l~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~mE~~IL 368 (498)
.+.+++++|++|++||+|++|. ++..+++..+++.. +.++|.+||..|+
T Consensus 40 ------~~~~~~~ia~a~l~lA~k~~~~-~~~~~~~~~~~~~~-~~~~i~~~e~~il 88 (88)
T cd00043 40 ------LGRSPSLVAAAALYLAAKVEEI-PPWLKDLVHVTGYA-TEEEILRMEKLLL 88 (88)
T ss_pred ------ccCChHHHHHHHHHHHHHHcCC-CCCHHHHhHHhCCC-CHHHHHHHHHHhC
Confidence 8899999999999999999999 99999999988743 9999999999875
No 17
>KOG2496|consensus
Probab=99.35 E-value=1e-11 Score=123.70 Aligned_cols=136 Identities=24% Similarity=0.309 Sum_probs=108.1
Q ss_pred hchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcc--cccCHHHHHHHHHHHHHHcC
Q psy2129 295 KMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITD--DTYTKKQLLKMETLILKVLN 372 (498)
Q Consensus 295 ~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~--~~yt~~eI~~mE~~IL~~L~ 372 (498)
.+|..++.||+.+|.||+..+++...+.+.|.+||+|+|||++|. -.++.+|+.-.. ..-+.+.|++.|..+|+.|+
T Consensus 73 ~lp~~Vv~TA~~fFkRffL~nsvme~~pk~I~~tc~flA~Kieef-~ISieqFvkn~~~~~~k~~e~vLk~E~~llqsL~ 151 (325)
T KOG2496|consen 73 NLPTSVVSTAIEFFKRFFLENSVMEYSPKIIMATCFFLACKIEEF-YISIEQFVKNMNGRKWKTHEIVLKYEFLLLQSLK 151 (325)
T ss_pred CCchHHHHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHhhhHhh-eecHHHHHhhccCcccccHHHHHhchHHHHHhhh
Confidence 479999999999999999999999999999999999999999997 567888886444 23468999999999999999
Q ss_pred CCccccchhhhHHHHHHhCC------Cc-hhHH-H-HHHHHHHHHhhcCccccCCChHHHHHHHHHHHH
Q psy2129 373 FDLNIPTVHSFICHITVSGH------LD-QSVL-Y-LAQYLSELALVSGDPFLQFLPSLIACSAIALAR 432 (498)
Q Consensus 373 fdL~~pTp~~FL~~fl~~~~------~~-~~i~-~-lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~ 432 (498)
|++.+-+|+.-+..|+..+. .+ .... . ....+++-+++... ++-|.||.||+|||..|.
T Consensus 152 f~L~vh~PyRPleGFl~D~kt~l~~~~n~d~~~~~~d~~~fl~~~lltDa-~lLytPsQIALaAil~a~ 219 (325)
T KOG2496|consen 152 FSLTVHNPYRPLEGFLLDMKTRLPALENPDILRKHDDSKKFLDRALLTDA-YLLYTPSQIALAAILHAA 219 (325)
T ss_pred hhheecCCCCchHHHHHHHHHHHHhccCHHHHhhhhhHHHHHHHHHHhcc-ceecChHHHHHHHHHHHh
Confidence 99999999999988876431 11 1111 1 12234444444444 788999999999995553
No 18
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=99.30 E-value=5e-12 Score=101.78 Aligned_cols=78 Identities=38% Similarity=0.597 Sum_probs=54.5
Q ss_pred HHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHHHHHHHHH
Q psy2129 290 VAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILK 369 (498)
Q Consensus 290 v~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~mE~~IL~ 369 (498)
++..+++++++.++|+.++||++....+.+.+++++|++|++||+|++|.. +...++...+++ |+.++|.+||+.||+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA~k~~~~~-~~~~~~~~~~~~-~~~~~i~~~~~~il~ 83 (83)
T smart00385 6 VCKALNLDPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLAAKTEEIP-PWTKELVHYTGY-FTEEEILRMEKLLLE 83 (83)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCC-CCchhHhHhhCC-CCHHHHHHHHHHHhC
Confidence 333333333333333333333333333377999999999999999999985 677888888775 799999999999973
No 19
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=98.77 E-value=4.5e-08 Score=78.52 Aligned_cols=81 Identities=30% Similarity=0.385 Sum_probs=75.4
Q ss_pred hhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCCChhhHHHHhCC-CHHHHHHHH
Q psy2129 382 SFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGH-SLDSLTECV 460 (498)
Q Consensus 382 ~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~W~~~L~~~tgy-t~~~I~~c~ 460 (498)
+|+..+....+.+..+..+|.++++.++.+.. +.+++|+.||+||+++|++..+ .+.|...+...+|+ +.++|.++.
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~-~~~~~~~~ia~a~l~lA~k~~~-~~~~~~~~~~~~~~~~~~~i~~~~ 78 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYK-FLKYSPSLIAAAALYLAAKTEE-IPPWTKELVHYTGYFTEEEILRME 78 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhc-CCCCchhHhHhhCCCCHHHHHHHH
Confidence 48889999999999999999999999999877 8999999999999999999999 66899999999999 999999999
Q ss_pred HHHH
Q psy2129 461 KCLH 464 (498)
Q Consensus 461 ~~L~ 464 (498)
..|.
T Consensus 79 ~~il 82 (83)
T smart00385 79 KLLL 82 (83)
T ss_pred HHHh
Confidence 8875
No 20
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=98.67 E-value=2.2e-07 Score=75.22 Aligned_cols=85 Identities=27% Similarity=0.313 Sum_probs=79.9
Q ss_pred ccchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCCChhhHHHHhCC-CHHH
Q psy2129 377 IPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGH-SLDS 455 (498)
Q Consensus 377 ~pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~W~~~L~~~tgy-t~~~ 455 (498)
.+++.+|+..+....+.+..+..+|.++++.++.... +.++.|+.||+||+++|.+..+ .+.|...+...+++ +.++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ia~a~l~lA~k~~~-~~~~~~~~~~~~~~~~~~~ 79 (88)
T cd00043 2 RPTPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYS-VLGRSPSLVAAAALYLAAKVEE-IPPWLKDLVHVTGYATEEE 79 (88)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc-cccCChHHHHHHHHHHHHHHcC-CCCCHHHHhHHhCCCCHHH
Confidence 5789999999999999999999999999999999887 8899999999999999999999 58999999999999 9999
Q ss_pred HHHHHHHH
Q psy2129 456 LTECVKCL 463 (498)
Q Consensus 456 I~~c~~~L 463 (498)
|..+...|
T Consensus 80 i~~~e~~i 87 (88)
T cd00043 80 ILRMEKLL 87 (88)
T ss_pred HHHHHHHh
Confidence 99888765
No 21
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=98.20 E-value=6.1e-06 Score=76.07 Aligned_cols=94 Identities=26% Similarity=0.338 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh--hhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHh
Q psy2129 235 LVDWLIEVAEEYKMHNETLHLAINYVDRFLSL--MSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFL 312 (498)
Q Consensus 235 lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~--~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl 312 (498)
+.+|+.++...-+++++++-+|..|+||+... ...
T Consensus 54 i~~fl~ri~~~~~~s~~~~i~aliYl~Rl~~~~~~~~------------------------------------------- 90 (149)
T PF08613_consen 54 IRDFLSRILKYTQCSPECLILALIYLDRLRQRSRKPN------------------------------------------- 90 (149)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH--H-TT-------------------------------------------
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcccc-------------------------------------------
Confidence 67899999999999999999999999999871 111
Q ss_pred hhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHHHHHHHHHHcCCCc
Q psy2129 313 SLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDL 375 (498)
Q Consensus 313 ~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~mE~~IL~~L~fdL 375 (498)
..+......-+-++|+.+|+|+-+.....-+.+..+++ ++.+++.+||+..|..|+|+|
T Consensus 91 --~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v~g--is~~eln~lE~~fL~~l~~~L 149 (149)
T PF08613_consen 91 --IPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKVGG--ISLKELNELEREFLKLLDYNL 149 (149)
T ss_dssp -----STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHT--S-HHHHHHHHHHHHHHTTT--
T ss_pred --cccccchhHHHHHHHHHHHHhhcccccccHHHHHhhcC--CCHHHHHHHHHHHHHHCCCcC
Confidence 01255566777799999999998877777888888876 799999999999999999986
No 22
>KOG1598|consensus
Probab=97.90 E-value=4.7e-05 Score=81.89 Aligned_cols=174 Identities=13% Similarity=0.057 Sum_probs=136.9
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHHHHHH
Q psy2129 287 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETL 366 (498)
Q Consensus 287 i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~mE~~ 366 (498)
|.+++.+++++. .+..|.++|...+.++-......+.|-.+||||+|+.+-+. -.+-||..+.. .+.-++-.+-+.
T Consensus 74 i~~~~~~l~l~~-~~~~a~~~~k~a~~~nftkGr~~~~vvasClY~vcR~e~t~-hlliDfS~~Lq--v~Vy~LG~~~l~ 149 (521)
T KOG1598|consen 74 IEELTERLNLGN-KTEVAFNFFKLAPDRNFTKGRRSTEVVAACLYLVCRLEKTD-HLLIDFSSYLQ--VSVYDLGSNFLE 149 (521)
T ss_pred HHHHHHhcCcch-HHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhhCCc-eEEEEeccceE--EehhhhhHHHHH
Confidence 566788899999 99999999999999999999999999999999999988773 33334443333 567778888888
Q ss_pred HHHHcCCC---ccccchhhhHHHHHHhCCCc---hhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCC
Q psy2129 367 ILKVLNFD---LNIPTVHSFICHITVSGHLD---QSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEA 440 (498)
Q Consensus 367 IL~~L~fd---L~~pTp~~FL~~fl~~~~~~---~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~ 440 (498)
+-..|.-. +-...|.-|+.+|...+..- .++...|..|+.-..-|.- ..+-+|+-|+.|||++|.++.| ...
T Consensus 150 l~~~L~i~en~~plvDpsL~i~Rfa~~L~~g~~~~~Vv~~a~~L~~rMkrdwm-~tGRRPsglcGAaLliAar~h~-~~r 227 (521)
T KOG1598|consen 150 VTDSLSIGENVSPLVDPSLYIVRFSCRLLFGDKTEDVAKTATRLAQRMKRDWM-QTGRRPSGLCGAALLIAARMHG-FRR 227 (521)
T ss_pred HHHHhccccccccccCcceeeechhHhhhcCCchHHHHHHHHHHHHHHHHHHH-HhCCCccchhHHHHHHHHHHcC-ccc
Confidence 88888888 67788999999998876443 4467777888877777776 8889999999999999999998 344
Q ss_pred ChhhHHHHhCCCHHHHHHHHHHHHHH
Q psy2129 441 WPSSLADITGHSLDSLTECVKCLHEV 466 (498)
Q Consensus 441 W~~~L~~~tgyt~~~I~~c~~~L~~l 466 (498)
--..+..+..+.+..|..-+..+.++
T Consensus 228 si~dIv~vvhV~e~Tl~kRl~Ef~~T 253 (521)
T KOG1598|consen 228 TIGDIAKVVHVCESTLSKRLKEFSDT 253 (521)
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHhcc
Confidence 44556666677777777776666554
No 23
>KOG0834|consensus
Probab=97.62 E-value=0.00016 Score=74.53 Aligned_cols=147 Identities=19% Similarity=0.201 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHH-----------HHHHhhch
Q psy2129 229 SEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE-----------VAEEYKMH 297 (498)
Q Consensus 229 ~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~e-----------v~~~l~L~ 297 (498)
...|.....||.+++..++++..|+..|+.|+.||.....+.+-..+.++..++++|.+.+ ++.++..+
T Consensus 36 ~~~r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~sclfLAgKvEetp~kl~dIi~~s~~~~~~ 115 (323)
T KOG0834|consen 36 LRLRQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAASCLFLAGKVEETPRKLEDIIKVSYRYLNP 115 (323)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHHHHHHHHhhcccCcccHHHHHHHHHHHcCc
Confidence 4679999999999999999999999999999999999988855556888999999998775 22222221
Q ss_pred --------------------------------------------------hH----HHHHHHHHHHHHhhhccccchhhh
Q psy2129 298 --------------------------------------------------NE----TLHLAINYVDRFLSLMSVVRSKLQ 323 (498)
Q Consensus 298 --------------------------------------------------~~----Tl~lAi~~fDRfl~~~~i~~~~lq 323 (498)
.. ..-+|-+++...+...-+.....+
T Consensus 116 ~~~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~~~~~~~a~~Aw~~~nD~~~t~~cL~y~p~ 195 (323)
T KOG0834|consen 116 KDLELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADENLKQPLAQAAWNFVNDSLRTTLCLQYSPH 195 (323)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhhhccccHHHHHHHHhchhheeeeeEeecCc
Confidence 11 222333333333333344555678
Q ss_pred hhhhhhhhhhhcccccCCCChhHH--HhhcccccCHHHHHHHHHHHHHHcCCCc
Q psy2129 324 LLGTTALFVASKYEEIYPPEVNEF--VYITDDTYTKKQLLKMETLILKVLNFDL 375 (498)
Q Consensus 324 Lva~aCL~IAsK~EE~~pp~l~dl--v~i~~~~yt~~eI~~mE~~IL~~L~fdL 375 (498)
-||++||+||+|+-....|...+- ....+...+.+++.++...+|....-+-
T Consensus 196 ~IAva~i~lA~~~~~~~~~~~~~~~w~~~~d~~vt~e~l~~i~~~~l~~y~~~~ 249 (323)
T KOG0834|consen 196 SIAVACIHLAAKLLGVELPSDTDKRWWREFDETVTNELLDDICHEFLDLYEQTP 249 (323)
T ss_pred EEEeehhhHHHHHcCCCCCCCcccchhhhhcccCCHHHHHHHHHHHHHHHhhcc
Confidence 899999999999977754444444 4455666899999999998887775443
No 24
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=97.56 E-value=0.00025 Score=56.97 Aligned_cols=65 Identities=8% Similarity=0.149 Sum_probs=55.4
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcc
Q psy2129 287 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITD 352 (498)
Q Consensus 287 i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~ 352 (498)
|.++|+.|+|+..+..+|..++++.....-........++++|+|+||+.... +.+++++...++
T Consensus 1 I~r~~~~L~L~~~v~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~acr~~~~-~~t~~eIa~~~~ 65 (71)
T PF00382_consen 1 IPRICSKLGLPEDVRERAKEIYKKAQERGLLKGRSPESIAAACIYLACRLNGV-PRTLKEIAEAAG 65 (71)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHHHHHTTS-SSSHHHHHHHCT
T ss_pred ChHHHhHcCCCHHHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHcCC-CcCHHHHHHHhC
Confidence 45789999999999999999999999988888888999999999999998866 888999887765
No 25
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=97.33 E-value=0.0041 Score=64.17 Aligned_cols=140 Identities=12% Similarity=0.052 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhH------------------------------
Q psy2129 233 SVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTAL------------------------------ 282 (498)
Q Consensus 233 ~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l------------------------------ 282 (498)
.....-|-+++..++++..+.=.|..++.++.....+...+...+..+++
T Consensus 123 ~~a~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~~~prtl~eI~~~~~v~~k~i~~~ 202 (310)
T PRK00423 123 AFALSELDRIASQLGLPRSVREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRCKVPRTLDEIAEVSRVSRKEIGRC 202 (310)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHH
Confidence 33445677888899999988888999988887665442111211212222
Q ss_pred ----------------HHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhH
Q psy2129 283 ----------------FVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNE 346 (498)
Q Consensus 283 ----------------~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~d 346 (498)
.-.++..+|..|+|+..+..+|..++++.....-....+..-+++||+||||+.... +.+.++
T Consensus 203 ~~~l~k~L~~~~~~~~p~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~~~~g~-~~t~ke 281 (310)
T PRK00423 203 YRFLLRELNLKLPPTDPIDYVPRFASELGLSGEVQKKAIEILQKAKEKGLTSGKGPTGLAAAAIYIASLLLGE-RRTQRE 281 (310)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHhCC-CCCHHH
Confidence 235555689999999999999999999988776677888999999999999998875 688999
Q ss_pred HHhhcccccCHHHHHHHHHHHHHHcCCCc
Q psy2129 347 FVYITDDTYTKKQLLKMETLILKVLNFDL 375 (498)
Q Consensus 347 lv~i~~~~yt~~eI~~mE~~IL~~L~fdL 375 (498)
+..+++ .+...|...-+.|++.|+..+
T Consensus 282 Ia~v~~--Vs~~tI~~~ykel~~~l~~~~ 308 (310)
T PRK00423 282 VAEVAG--VTEVTVRNRYKELAEKLDIKI 308 (310)
T ss_pred HHHHcC--CCHHHHHHHHHHHHHHhCccc
Confidence 988876 788999999999998887654
No 26
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=97.28 E-value=0.0021 Score=51.57 Aligned_cols=71 Identities=23% Similarity=0.089 Sum_probs=59.6
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCCChhhHHHHhCCCHHHH
Q psy2129 384 ICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSL 456 (498)
Q Consensus 384 L~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~W~~~L~~~tgyt~~~I 456 (498)
+..|...++++..+...|..+...+..... .-+-+|..||+||+|+|++..+ .+.....+...+|++..+|
T Consensus 1 I~r~~~~L~L~~~v~~~A~~i~~~~~~~~~-~~Gr~~~~iaAA~iY~acr~~~-~~~t~~eIa~~~~Vs~~tI 71 (71)
T PF00382_consen 1 IPRICSKLGLPEDVRERAKEIYKKAQERGL-LKGRSPESIAAACIYLACRLNG-VPRTLKEIAEAAGVSEKTI 71 (71)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHTTT-STTS-HHHHHHHHHHHHHHHTT-SSSSHHHHHHHCTSSHHHH
T ss_pred ChHHHhHcCCCHHHHHHHHHHHHHHHHcCC-cccCCHHHHHHHHHHHHHHHcC-CCcCHHHHHHHhCCCCCcC
Confidence 467889999999999999999999887776 7789999999999999999999 7777788888899888765
No 27
>KOG4164|consensus
Probab=97.11 E-value=0.00039 Score=72.16 Aligned_cols=93 Identities=18% Similarity=0.375 Sum_probs=68.8
Q ss_pred hhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccc--cCHHHHHHHHHHHHHHc
Q psy2129 294 YKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDT--YTKKQLLKMETLILKVL 371 (498)
Q Consensus 294 l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~--yt~~eI~~mE~~IL~~L 371 (498)
.++..-|+++|-.||.+......+...+-+|+|-|||++|+|+.+..--.++.++.-.... +.+.|++..|.-||-+|
T Consensus 396 ~~id~~TVa~AyVYFEKliLkglisK~NRKlcAGAclLlaaKmnD~Kks~vKslIek~Ee~fR~nrrdLia~Ef~VlvaL 475 (497)
T KOG4164|consen 396 CGIDVVTVAMAYVYFEKLILKGLISKQNRKLCAGACLLLAAKMNDLKKSTVKSLIEKLEEQFRLNRRDLIAFEFPVLVAL 475 (497)
T ss_pred cCccceeehhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccHHhhhhhhhhHHHhh
Confidence 3344444455555555555555558999999999999999999988778888888755543 57999999999999999
Q ss_pred CCCccccchhhhHHHH
Q psy2129 372 NFDLNIPTVHSFICHI 387 (498)
Q Consensus 372 ~fdL~~pTp~~FL~~f 387 (498)
.|.|+.|- .+.+.+|
T Consensus 476 efaL~~~~-~eVlPHy 490 (497)
T KOG4164|consen 476 EFALHLPE-HEVLPHY 490 (497)
T ss_pred hhhccCCh-hhcchHH
Confidence 99998652 3344433
No 28
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=97.01 E-value=0.0062 Score=62.74 Aligned_cols=64 Identities=22% Similarity=0.336 Sum_probs=57.0
Q ss_pred CCCH----HHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHH
Q psy2129 226 DINS----EMRSVLVDWLIEVAEEYK--MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 289 (498)
Q Consensus 226 ~i~~----~~R~~lvdWl~ev~~~~~--l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~e 289 (498)
.+++ .+|.--.++|.+++..++ ++.+++..|+.||+||+...++..-..++++.+|+++|++.+
T Consensus 46 ~Lt~eeE~~l~~~y~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv~~~~p~~Ia~tclfLA~KvE 115 (305)
T TIGR00569 46 FLTPEEELDLVKYYEKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSVMEYHPKIIMLTCVFLACKVE 115 (305)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCchhhcCHHHHHHHHHHHHHhcc
Confidence 4665 567777888999999999 999999999999999999998877778999999999998876
No 29
>KOG0655|consensus
Probab=96.94 E-value=0.00082 Score=68.57 Aligned_cols=34 Identities=44% Similarity=0.823 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhh
Q psy2129 280 TALFVASIIEVAEEYKMHNETLHLAINYVDRFLS 313 (498)
Q Consensus 280 r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~ 313 (498)
|++++.|+++||.-++|+++|+|+|+.|||||+.
T Consensus 145 RaILlDWlmEVCEvykLHRETFyLAvDy~DRyl~ 178 (408)
T KOG0655|consen 145 RAILLDWLMEVCEVYKLHRETFYLAVDYFDRYLE 178 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999985
No 30
>KOG0656|consensus
Probab=96.21 E-value=0.0045 Score=64.14 Aligned_cols=34 Identities=41% Similarity=0.635 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhh
Q psy2129 280 TALFVASIIEVAEEYKMHNETLHLAINYVDRFLS 313 (498)
Q Consensus 280 r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~ 313 (498)
|...+.||.++|+++++.++++.+|++|||||++
T Consensus 78 R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls 111 (335)
T KOG0656|consen 78 RKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLS 111 (335)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhc
Confidence 8899999999999999999999999999999996
No 31
>KOG0835|consensus
Probab=96.01 E-value=0.062 Score=55.17 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHH
Q psy2129 228 NSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 289 (498)
Q Consensus 228 ~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~e 289 (498)
....|..=++||-+-+--++|+..+.+.+..+|-||+...++.+-.+-++..+|+++|++++
T Consensus 19 e~el~~LG~e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v~~~~e~vv~ACv~LASKiE 80 (367)
T KOG0835|consen 19 EEELRILGCELIQEAGILLNLPQVAMATGQVLFQRFCYSKSFVRHDFEIVVMACVLLASKIE 80 (367)
T ss_pred HHHHHHHhHHHHHhhhHhhcCcHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHhhhc
Confidence 34668888999999999999999999999999999999998878778888889999999886
No 32
>KOG0653|consensus
Probab=95.76 E-value=0.0089 Score=63.64 Aligned_cols=36 Identities=44% Similarity=0.682 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhh
Q psy2129 279 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 314 (498)
Q Consensus 279 ~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~ 314 (498)
-|++.++|+.+++.+|+|.++|+++||+++|||+..
T Consensus 157 mR~iLvdwlvevh~~F~L~~ETL~LaVnliDRfL~~ 192 (391)
T KOG0653|consen 157 MRAILVDWLVEVHEKFGLSPETLYLAVNLIDRFLSK 192 (391)
T ss_pred HHHHHHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999963
No 33
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=95.52 E-value=0.019 Score=50.32 Aligned_cols=36 Identities=44% Similarity=0.650 Sum_probs=33.0
Q ss_pred cchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhh
Q psy2129 278 GTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLS 313 (498)
Q Consensus 278 ~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~ 313 (498)
..|...+.|+.+++.++++++.|+++|+.|||||+.
T Consensus 29 ~~r~~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~ 64 (127)
T PF00134_consen 29 EMRQIIIDWIIELCQRLKLSPETLHLAIYLFDRFLS 64 (127)
T ss_dssp HHHHHHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999999985
No 34
>KOG1674|consensus
Probab=92.59 E-value=0.29 Score=48.13 Aligned_cols=102 Identities=24% Similarity=0.254 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhc
Q psy2129 236 VDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLM 315 (498)
Q Consensus 236 vdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~ 315 (498)
-+++.++.+.-+.+++++-+|-.|||||........-+ ....
T Consensus 79 ~~yleri~k~~~~s~~~lv~al~Yldr~~~~~~~~~~~------~~~~-------------------------------- 120 (218)
T KOG1674|consen 79 RQYLERIFKYSKCSPECLVLALVYLDRFVKQPQARSVK------PQSL-------------------------------- 120 (218)
T ss_pred HHHHHHHHHHhcCCchhhhhhhhhhhhhhhhhcccccC------cccc--------------------------------
Confidence 36677777788999999999999999998763310000 0000
Q ss_pred cccchh-hhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHHHHHHHHHHcCCCcccc
Q psy2129 316 SVVRSK-LQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIP 378 (498)
Q Consensus 316 ~i~~~~-lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~mE~~IL~~L~fdL~~p 378 (498)
+.-.+ ..-.-++|+.+|+|+.+..--.-.-+..+. ..+.+++-.+|...|..++|++.++
T Consensus 121 -i~s~n~vhR~lit~v~vs~kf~~d~~y~n~~~a~vg--gl~~~eln~lE~~~l~~~~~~l~i~ 181 (218)
T KOG1674|consen 121 -INSLNKVHRLLITTVTVSTKFLDDVYYSNAYYAKVG--GLTTDELNKLELDLLFLLDFRLIIS 181 (218)
T ss_pred -cccchhHHHHHHHHHHHHHhhccchhhhHHHHHHhC--CCChHhhhhhhHHHHhhCCeEEEec
Confidence 01111 222568999999999876333333333333 3789999999999999999999875
No 35
>KOG1675|consensus
Probab=92.46 E-value=0.18 Score=51.54 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhhcccc--chhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHHHHHHHHHHcCCCccccch
Q psy2129 303 LAINYVDRFLSLMSVV--RSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTV 380 (498)
Q Consensus 303 lAi~~fDRfl~~~~i~--~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~mE~~IL~~L~fdL~~pTp 380 (498)
....|++|.+...... +.+...+....+++|+|+-....-.--|.+.|+.+. +.+|+..||+.+|+.|+|++++|..
T Consensus 213 itL~~~erl~~~~e~~~~p~~w~r~~~g~il~sskv~~dqs~wnvdycqIlKd~-tveDmNe~ERqfLelLqfNinvp~s 291 (343)
T KOG1675|consen 213 ITLVYAERLLWLAERDPCPRNWSRAVLGEILLSSKVYDDQSVWNVDYCEILKDQ-SVDDMNALERQFLELLQFNINVPSS 291 (343)
T ss_pred HHHHhhHhhhhHhhcCCCcchhhhhhhhhheehhhhhhhhhcccHHHHHHHhhc-cHhhHHHHHHHHHHHHhhccCccHH
Confidence 3345667765544444 566777777789999999776544446666676654 8999999999999999999998854
No 36
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=92.37 E-value=0.32 Score=49.76 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHHH
Q psy2129 229 SEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEV 290 (498)
Q Consensus 229 ~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~ev 290 (498)
...|..-.-|+..+|..++++..++-.||.+++||..+..+..-..+-+..++++||.+.+-
T Consensus 42 ~~l~i~~~k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~sv~e~~~~~vv~tcv~LA~K~ed 103 (297)
T COG5333 42 LNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLACKVED 103 (297)
T ss_pred hhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcccccccHHHHHHhheeeeeeccc
Confidence 45566667899999999999999999999999999999998777788888888888888763
No 37
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=92.01 E-value=0.12 Score=55.79 Aligned_cols=37 Identities=41% Similarity=0.621 Sum_probs=35.1
Q ss_pred cchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhh
Q psy2129 278 GTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 314 (498)
Q Consensus 278 ~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~ 314 (498)
+-|.+++.|+.+++..|++.++|+++||+++|||++.
T Consensus 211 ~mR~~Lv~wlvevH~~F~llpeTL~lainiiDrfLs~ 247 (440)
T COG5024 211 SMRSILVDWLVEVHGKFGLLPETLFLAINIIDRFLSS 247 (440)
T ss_pred hHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcc
Confidence 6699999999999999999999999999999999963
No 38
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=89.32 E-value=3 Score=42.72 Aligned_cols=87 Identities=17% Similarity=-0.008 Sum_probs=73.9
Q ss_pred chhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCCChhhHHHHhCCCHHHHHH
Q psy2129 379 TVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTE 458 (498)
Q Consensus 379 Tp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~W~~~L~~~tgyt~~~I~~ 458 (498)
+....|..+...++++..+...|..+.-.++-..- .-+-+...++|||+|.|++..+ .+.....+...++.+..+|..
T Consensus 99 ~a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l-~rGRsie~v~AA~iY~acR~~~-~prtl~eIa~a~~V~~kei~r 176 (285)
T COG1405 99 TALEELERIASALGLPESVRETAARIYRKAVDKGL-LRGRSIESVAAACIYAACRING-VPRTLDEIAKALGVSKKEIGR 176 (285)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCC-CcCCcHHHHHHHHHHHHHHHcC-CCccHHHHHHHHCCCHHHHHH
Confidence 45567888889999999999999888877776665 7778899999999999999998 676777888899999999999
Q ss_pred HHHHHHHHH
Q psy2129 459 CVKCLHEVH 467 (498)
Q Consensus 459 c~~~L~~l~ 467 (498)
+++.+.+..
T Consensus 177 tyr~~~~~L 185 (285)
T COG1405 177 TYRLLVREL 185 (285)
T ss_pred HHHHHHHhc
Confidence 999777643
No 39
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=89.24 E-value=1.3 Score=37.68 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHHHHHHHHHHcC
Q psy2129 297 HNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLN 372 (498)
Q Consensus 297 ~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~mE~~IL~~L~ 372 (498)
...+...|-.+++-.+....+.....-+||++|+++|.+.-...+..-..+..+++ |+.+++..+=..|.+.+.
T Consensus 17 ~~~~~~~a~~l~el~l~~~~fl~~~PS~iAaAai~lA~~~~~~~~~~~~~l~~~t~--~~~~~l~~c~~~i~~~~~ 90 (118)
T PF02984_consen 17 DQEVRNLARYLLELSLLDYEFLQYPPSVIAAAAILLARKILGKEPPWPESLEKLTG--YDKEDLKECIELIQELLS 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHTTS-HHHHHHHHHHHHHHHHHSSTCSHHHHHHHHT--S-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhCccccCCccchhhcC--CCHHHHHHHHHHHHHHHH
Confidence 55677778888887777767777888999999999999996643444455555654 688888877766665554
No 40
>KOG1597|consensus
Probab=87.17 E-value=4.8 Score=41.20 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=67.5
Q ss_pred hhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCCChhhHHHHhCCCHHHHHHHH
Q psy2129 381 HSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECV 460 (498)
Q Consensus 381 ~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~W~~~L~~~tgyt~~~I~~c~ 460 (498)
+.-+..+...++++..+...|..+....- +....-+..--.|++|||++|++..+ .+..-..+..++..+..||..|+
T Consensus 108 ~~~I~~m~d~~~Lp~~I~d~A~~ifk~v~-~~k~lrGks~eai~AAclyiACRq~~-~pRT~kEI~~~anv~kKEIgr~~ 185 (308)
T KOG1597|consen 108 FKEITAMCDRLSLPATIKDRANEIFKLVE-DSKLLRGKSVEALAAACLYIACRQED-VPRTFKEISAVANVSKKEIGRCV 185 (308)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHH-HhhhhcCccHHHHHHHHHHHHHHhcC-CCchHHHHHHHHcCCHHHHHHHH
Confidence 34556677788888888888887776655 33325566778999999999999988 66666777888899999999999
Q ss_pred HHHHHHHHh
Q psy2129 461 KCLHEVHRK 469 (498)
Q Consensus 461 ~~L~~l~~~ 469 (498)
+.|.+-+..
T Consensus 186 K~i~~~l~~ 194 (308)
T KOG1597|consen 186 KLIGEALET 194 (308)
T ss_pred HHHHHHHhc
Confidence 998886543
No 41
>KOG0794|consensus
Probab=85.95 E-value=1.4 Score=43.48 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHh
Q psy2129 235 LVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFL 312 (498)
Q Consensus 235 lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl 312 (498)
.-+.+..++++.+++...+-.|+.||-||+.+.++..=...++.++|+++|.+-|.+- ....+.....|..+-.||.
T Consensus 44 ~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S~k~~~p~lla~TClyLAcKvEE~~-i~~~r~l~~~a~~L~~~f~ 120 (264)
T KOG0794|consen 44 MANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKSLKEIEPRLLAPTCLYLACKVEECP-IVHIRLLVNEAKVLKTRFS 120 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhhcc-hHHHHHHHHHHHHHhhhcc
Confidence 3355778999999999999999999999999988754457889999999999988765 4445555566666766664
No 42
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=72.25 E-value=48 Score=30.28 Aligned_cols=88 Identities=20% Similarity=0.124 Sum_probs=57.4
Q ss_pred ccchhhhHHHHHHhCCCchhHHHHHHHHHHHHhh---cC-ccccCCChHHHHHHHHHHHHHHcCCCCCChhhHHHHhCCC
Q psy2129 377 IPTVHSFICHITVSGHLDQSVLYLAQYLSELALV---SG-DPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHS 452 (498)
Q Consensus 377 ~pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~---d~-~~fl~y~PS~IAaAaL~LA~~~l~~~~~W~~~L~~~tgyt 452 (498)
..+..+|+.++.+....+..+.-+|..+++-... .. ...-...+.-+=++|+.+|.+.++....|......++|++
T Consensus 51 ~i~i~~fl~ri~~~~~~s~~~~i~aliYl~Rl~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v~gis 130 (149)
T PF08613_consen 51 SISIRDFLSRILKYTQCSPECLILALIYLDRLRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKVGGIS 130 (149)
T ss_dssp SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-
T ss_pred CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhhcCCC
Confidence 3456779999999999988888777666665444 22 2234466778889999999999986777888889999999
Q ss_pred HHHHHHHHHHHH
Q psy2129 453 LDSLTECVKCLH 464 (498)
Q Consensus 453 ~~~I~~c~~~L~ 464 (498)
..++...=..++
T Consensus 131 ~~eln~lE~~fL 142 (149)
T PF08613_consen 131 LKELNELEREFL 142 (149)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888765444443
No 43
>KOG4557|consensus
Probab=69.46 E-value=1.2e+02 Score=30.10 Aligned_cols=173 Identities=16% Similarity=0.115 Sum_probs=93.6
Q ss_pred HHHHHHHhhc--hhHHHHHHHHHHHHHhh---hccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHH
Q psy2129 287 IIEVAEEYKM--HNETLHLAINYVDRFLS---LMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLL 361 (498)
Q Consensus 287 i~ev~~~l~L--~~~Tl~lAi~~fDRfl~---~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~ 361 (498)
|.+++.++|| .+..+.-|.-|. |.+. ...+.+-.-..-++.|+-||+-.--+ +.+-...+.+++ .+++...
T Consensus 3 I~~l~~klgL~~ep~~lrKa~E~~-RL~~~~~~~~~~~v~E~~kaV~CldlAa~~l~i-~fDr~~avKLSG--l~k~~Y~ 78 (262)
T KOG4557|consen 3 ISDLGRKLGLDNEPLLLRKAAEIR-RLCDAQFDSSIIGVGEICKAVICLDLAATRLQI-IFDRQAAVKLSG--LSKKAYS 78 (262)
T ss_pred HHHHHHhcCCccChHHHHHHHHHH-HHHHhhccCccccccchhHHHHhHHHHHHHhcc-cccHHHHHHhcc--ccHHHHH
Confidence 5567888888 334444444433 3322 11223333345567888887755433 333444555554 5666666
Q ss_pred HHHHHHHHHcCCCccccchhhhHHHHHHhCCCchhHHHHHHHHHH-----HHhhcCccccCCChHHHHHHHHHHHHHHcC
Q psy2129 362 KMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSE-----LALVSGDPFLQFLPSLIACSAIALARYCLD 436 (498)
Q Consensus 362 ~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~i~~lA~~lle-----lsL~d~~~fl~y~PS~IAaAaL~LA~~~l~ 436 (498)
+.-+..-+.|+-+.... ..+...+| +..+ +-..|.-++. +.... ..=..+.--+-++||+++|++.+.
T Consensus 79 ~~~~sfe~llgln~~~~-VrdlaVQf----gc~e-vi~~a~~vl~syk~~lpaT~-~~~~D~SrP~ft~aA~~~ack~lK 151 (262)
T KOG4557|consen 79 RSFNSFENLLGLNIKLN-VRDLAVQF----GCVE-VIKSAQNVLSSYKERLPATR-RANADFSRPVFTAAAFYLACKKLK 151 (262)
T ss_pred HHHHHHHHHhcchhhcC-HHHHHHHH----hHHH-HHHHHHHHHHHHHhcCchhh-hcCCcccchHHHHHHHHHHHHHHH
Confidence 65555555555444321 11111111 1111 1112222211 11111 112445566778999999999987
Q ss_pred CCCCChhhHHHHhCCCHHHHHHHHHHHHHHHHhCC
Q psy2129 437 YKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGE 471 (498)
Q Consensus 437 ~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~~~~~ 471 (498)
..--...|...+|..+.++.-..+.+.+.+....
T Consensus 152 -lKVdK~kli~~sg~~~s~F~~l~kqler~~~qv~ 185 (262)
T KOG4557|consen 152 -LKVDKLKLIEVSGTSESEFSCLSKQLERNYKQVS 185 (262)
T ss_pred -HhhhHhhcccccCCCHHHHHHHHHHHHHHHHHhc
Confidence 4555567888999999999888888888776543
No 44
>KOG0654|consensus
Probab=64.43 E-value=4 Score=43.09 Aligned_cols=34 Identities=50% Similarity=0.826 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhh
Q psy2129 280 TALFVASIIEVAEEYKMHNETLHLAINYVDRFLS 313 (498)
Q Consensus 280 r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~ 313 (498)
|+++++|..++++.+++..+++++++++.|||+.
T Consensus 137 rgilvdwlvevsee~r~~~e~l~ls~~~~drfl~ 170 (359)
T KOG0654|consen 137 RGILVDWLVEVSEEYRLTFETLYLSVNYRDRFLS 170 (359)
T ss_pred hhhhhhhhhHHHHHHHhhhhheeecHHHHHHHhc
Confidence 8999999999999999999999999999999986
No 45
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and SV40 large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion (see IPR002720 from INTERPRO) appears to be required for the stable folding of the B box. Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the B-box is on C-terminal side of the A-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1GUX_B 3POM_A 1GH6_B 1N4M_A 1O9K_H 4ELL_B 2R7G_C 4ELJ_A.
Probab=49.38 E-value=49 Score=30.17 Aligned_cols=64 Identities=8% Similarity=0.117 Sum_probs=48.2
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhhhcc--ccchhhhhhhhhhhhhhhcccccCCCChhHHHhh
Q psy2129 286 SIIEVAEEYKMHNETLHLAINYVDRFLSLMS--VVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYI 350 (498)
Q Consensus 286 ~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~--i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i 350 (498)
-+.++|.+++++++.....-..|+..+.... +...++-.+-++|+|+-+|+.. ..++.+++...
T Consensus 17 Rl~~LC~~L~l~~~~~~~iwt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~-~~~sF~~Ii~~ 82 (135)
T PF01857_consen 17 RLQDLCERLDLSSDLREKIWTCFEHSLTHHTELMKDRHLDQIILCAIYGICKVSK-EELSFKDIIKA 82 (135)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHHHSGGGGTTS-HHHHHHHHHHHHHHHTT--S--HHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhhc-CCCCHHHHHHH
Confidence 4567999999999998888889998876442 4566788888999999999976 46666776653
No 46
>KOG1598|consensus
Probab=47.47 E-value=1.2e+02 Score=33.73 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHh---hcccccC
Q psy2129 299 ETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVY---ITDDTYT 356 (498)
Q Consensus 299 ~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~---i~~~~yt 356 (498)
+++-+|..++.|..--+-....+.--+..|||+|||.+... ..++.|++. +|..+++
T Consensus 185 ~Vv~~a~~L~~rMkrdwm~tGRRPsglcGAaLliAar~h~~-~rsi~dIv~vvhV~e~Tl~ 244 (521)
T KOG1598|consen 185 DVAKTATRLAQRMKRDWMQTGRRPSGLCGAALLIAARMHGF-RRTIGDIAKVVHVCESTLS 244 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHHcCc-cccHHHHHHHHHHhHHHHH
Confidence 46677777777765544445555666778899999999887 667777654 4444433
No 47
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=43.20 E-value=1.1e+02 Score=25.19 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=46.2
Q ss_pred hccCCchhhhHHHHHHH------HHHHHHhhCCCccccccCCC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy2129 190 VCMLINADDYRDDIYQY------LLKCERRIRPKANYMRKQND-INSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDR 262 (498)
Q Consensus 190 ~~~~~~~~eY~~di~~~------l~~~E~~~~p~~~y~~~q~~-i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDR 262 (498)
..++.+|.|..+|-+.- ..+.|.++- ..+-....+ -+-.-|..+|+++..++..-+++.+ .|+.++|.
T Consensus 5 ~~~~~TV~dlw~Ew~~g~~g~psI~~le~~yG--~~WR~~~~~~~~y~rRK~Ii~~I~~l~~~~g~~~~---~ai~~le~ 79 (81)
T PF12550_consen 5 SRSIKTVYDLWREWFTGLNGQPSIRSLEKKYG--SKWRRDSKERRTYSRRKVIIDFIERLANERGISEE---EAIEILEE 79 (81)
T ss_pred CCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhC--hhhccCcccchhHHHHHHHHHHHHHHHHHcCCCHH---HHHHHHHh
Confidence 34556667777776665 777788774 233322222 2346699999999999888887766 67777776
Q ss_pred H
Q psy2129 263 F 263 (498)
Q Consensus 263 f 263 (498)
+
T Consensus 80 ~ 80 (81)
T PF12550_consen 80 I 80 (81)
T ss_pred c
Confidence 4
No 48
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=26.59 E-value=56 Score=27.48 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q psy2129 232 RSVLVDWLIEVAEEYKMHNETLHLAINYVDRF 263 (498)
Q Consensus 232 R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRf 263 (498)
=+.+||||++-+ ...=..+++.++..++|.=
T Consensus 35 GsElVdWL~~~~-~~~sR~eAv~lgq~Ll~~g 65 (85)
T cd04441 35 GSEFIDWLLQEG-EAESRREAVQLCRRLLEHG 65 (85)
T ss_pred chHHHHHHHHcC-CCCCHHHHHHHHHHHHHCC
Confidence 367999999865 3344567777777777643
No 49
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=22.61 E-value=76 Score=26.44 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy2129 232 RSVLVDWLIEVAEEYKMHNETLHLAINYVDR 262 (498)
Q Consensus 232 R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDR 262 (498)
=..+||||++... ..=..|++.+|-.++|.
T Consensus 33 GselVdWL~~~~~-~~sR~eAv~lg~~Ll~~ 62 (83)
T cd04443 33 GCDLVSWLIEVGL-AQDRGEAVLYGRRLLQG 62 (83)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHHHHC
Confidence 4679999998522 23335888888887774
No 50
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=22.10 E-value=66 Score=26.66 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy2129 232 RSVLVDWLIEVAEEYKMHNETLHLAINYVDR 262 (498)
Q Consensus 232 R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDR 262 (498)
=+.+||||++... ..-..|.+.++-.++|.
T Consensus 31 GselVdWL~~~~~-~~~r~eAv~lg~~Ll~~ 60 (81)
T cd04439 31 GNEFVSWLLEIGE-ISKPEEGVNLGQALLEN 60 (81)
T ss_pred hHHHHHHHHHcCC-CCCHHHHHHHHHHHHHC
Confidence 3579999997642 22235888888877774
No 51
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=20.61 E-value=77 Score=26.41 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy2129 233 SVLVDWLIEVAEEYKMHNETLHLAINYVDR 262 (498)
Q Consensus 233 ~~lvdWl~ev~~~~~l~~eTl~LAV~~lDR 262 (498)
+.+||||++.... .=..+++-++..+||.
T Consensus 32 selVdWL~~~~~~-~sR~eAv~lgq~Ll~~ 60 (82)
T cd04442 32 KELIDWLIEHKEA-SDRETAIKIMQKLLDH 60 (82)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHHHC
Confidence 5799999975431 2345666777766664
Done!