Query psy2129
Match_columns 498
No_of_seqs 290 out of 1875
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 16:46:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 8.8E-54 3E-58 424.9 26.7 254 195-497 2-256 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 1.6E-52 5.6E-57 418.0 20.6 252 195-497 2-255 (269)
3 1g3n_C V-cyclin; cyclin-depend 100.0 1.8E-46 6.2E-51 371.7 23.3 233 191-475 12-254 (257)
4 2f2c_A Cyclin homolog, V-cycli 100.0 1.4E-45 4.9E-50 364.7 24.1 228 192-471 14-250 (254)
5 3g33_B CCND3 protein; Ser/Thr 100.0 1.1E-44 3.9E-49 367.9 26.1 224 199-471 37-269 (306)
6 1w98_B Cyclin E, G1/S-specific 100.0 6E-45 2.1E-49 366.0 23.3 246 192-495 10-270 (283)
7 1f5q_B Gamma herpesvirus cycli 100.0 7.1E-44 2.4E-48 352.8 20.0 216 200-471 21-244 (252)
8 2w96_A G1/S-specific cyclin-D1 100.0 2.8E-43 9.6E-48 351.4 22.3 225 200-473 24-261 (271)
9 2ivx_A Cyclin-T2; transcriptio 100.0 7.3E-34 2.5E-38 280.9 18.3 205 227-483 26-253 (257)
10 2i53_A Cyclin K; cell cycle, t 100.0 3.4E-33 1.2E-37 275.9 16.0 199 224-472 33-254 (258)
11 3rgf_B Cyclin-C; protein kinas 100.0 1.7E-32 6E-37 275.6 20.9 205 229-486 40-263 (285)
12 1zp2_A RNA polymerase II holoe 100.0 7.6E-32 2.6E-36 263.3 18.2 187 232-471 28-222 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 8.5E-32 2.9E-36 278.8 13.9 203 226-480 32-257 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 3E-29 1E-33 256.4 19.8 202 230-481 55-276 (323)
15 1c9b_A General transcription f 99.9 7.5E-27 2.6E-31 223.5 20.4 180 283-467 8-187 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 3.1E-23 1E-27 197.2 21.1 180 283-467 12-193 (200)
17 3k7a_M Transcription initiatio 99.8 1.3E-20 4.5E-25 194.0 7.6 178 285-467 131-320 (345)
18 4bbr_M Transcription initiatio 99.6 1.2E-15 4.1E-20 157.0 7.4 179 284-467 130-320 (345)
19 1c9b_A General transcription f 98.8 4.3E-08 1.5E-12 93.1 12.2 139 231-372 4-188 (207)
20 1ais_B TFB TFIIB, protein (tra 98.6 4.4E-07 1.5E-11 85.5 14.6 143 231-376 8-198 (200)
21 2pmi_B PHO85 cyclin PHO80, ami 98.1 4.6E-05 1.6E-09 76.1 14.1 142 196-391 35-185 (293)
22 1w98_B Cyclin E, G1/S-specific 97.6 0.00031 1.1E-08 69.8 10.9 75 223-314 9-84 (283)
23 2cch_B Cyclin A2, cyclin-A; co 97.4 0.00063 2.2E-08 66.6 9.8 67 231-314 6-73 (260)
24 2b9r_A Human cyclin B1; cell c 97.4 0.00083 2.8E-08 66.2 10.7 36 279-314 37-72 (269)
25 1zp2_A RNA polymerase II holoe 97.3 0.0013 4.6E-08 63.2 11.6 34 280-313 28-61 (235)
26 2w96_A G1/S-specific cyclin-D1 97.2 0.0013 4.3E-08 64.8 10.5 68 232-314 24-91 (271)
27 3rgf_B Cyclin-C; protein kinas 97.1 0.0037 1.3E-07 62.1 11.8 35 279-313 42-76 (285)
28 1f5q_B Gamma herpesvirus cycli 96.9 0.00062 2.1E-08 66.7 4.3 36 278-313 47-82 (252)
29 1g3n_C V-cyclin; cyclin-depend 96.6 0.0013 4.5E-08 64.2 4.5 36 279-314 50-85 (257)
30 2f2c_A Cyclin homolog, V-cycli 96.6 0.0013 4.4E-08 64.1 4.2 36 279-314 51-86 (254)
31 3g33_B CCND3 protein; Ser/Thr 96.5 0.0017 5.8E-08 65.3 4.3 36 279-314 70-105 (306)
32 2ivx_A Cyclin-T2; transcriptio 96.0 0.0047 1.6E-07 60.0 4.5 36 279-314 30-65 (257)
33 2i53_A Cyclin K; cell cycle, t 95.9 0.0058 2E-07 59.3 4.5 36 279-314 40-75 (258)
34 2pk2_A Cyclin-T1, protein TAT; 95.5 0.0075 2.6E-07 61.9 4.0 36 279-314 37-72 (358)
35 4bbr_M Transcription initiatio 94.7 0.15 5E-06 52.0 10.7 86 380-467 129-214 (345)
36 1jkw_A Cyclin H; cell cycle, c 94.3 0.033 1.1E-06 56.2 4.6 34 280-313 57-92 (323)
37 3k7a_M Transcription initiatio 92.6 0.077 2.6E-06 54.0 4.2 86 381-468 130-215 (345)
38 3h4c_A Transcription factor TF 88.7 5.6 0.00019 37.5 12.3 150 279-433 11-169 (260)
39 2pmi_B PHO85 cyclin PHO80, ami 66.0 43 0.0015 33.2 11.0 88 379-466 76-165 (293)
40 3m03_A ORC6, origin recognitio 63.7 31 0.0011 28.5 8.0 78 287-369 6-89 (95)
41 2qdj_A Retinoblastoma-associat 47.4 35 0.0012 33.9 6.9 66 286-352 5-74 (304)
42 3m03_A ORC6, origin recognitio 36.2 70 0.0024 26.3 5.9 52 416-468 41-92 (95)
43 2p1m_A SKP1-like protein 1A; F 25.5 56 0.0019 28.9 3.9 37 323-360 112-148 (160)
44 2ast_A S-phase kinase-associat 22.3 87 0.003 27.5 4.5 37 323-360 113-149 (159)
45 1n0x_P B2.1 peptide, immunoglo 20.5 22 0.00074 21.7 0.0 15 3-17 4-18 (26)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=8.8e-54 Score=424.87 Aligned_cols=254 Identities=52% Similarity=0.850 Sum_probs=244.6
Q ss_pred chhhhHHHHHHHHHHHHHhhCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchh
Q psy2129 195 NADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKL 274 (498)
Q Consensus 195 ~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ 274 (498)
.+.||++|||.||++.|.++.|+++|+..|++|++.||.+++|||++|+..|+++++|+|+||+|+|||++...+
T Consensus 2 ~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v----- 76 (260)
T 2cch_B 2 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSV----- 76 (260)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC-----
T ss_pred chHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCC-----
Confidence 367999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccc
Q psy2129 275 QLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDT 354 (498)
Q Consensus 275 ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~ 354 (498)
.+.++|++|+||||||||+||..||++++++.++++.
T Consensus 77 -------------------------------------------~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~ 113 (260)
T 2cch_B 77 -------------------------------------------LRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDT 113 (260)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSS
T ss_pred -------------------------------------------CHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCC
Confidence 8889999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCch-hHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHH
Q psy2129 355 YTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQ-SVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARY 433 (498)
Q Consensus 355 yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~-~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~ 433 (498)
|++++|.+||+.||++|+|+++.|||++||.+|+..++.+. ++..+|++++++++.+...+++|+||.||+||+++|+.
T Consensus 114 ~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~ 193 (260)
T 2cch_B 114 YTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALY 193 (260)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999776 88999999999999887658999999999999999999
Q ss_pred HcCCCCCChhhHHHHhCCCHHHHHHHHHHHHHHHHhCCCCchhHHHHhhCCCccCceeecCCCC
Q psy2129 434 CLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEART 497 (498)
Q Consensus 434 ~l~~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~~~~~~~~~~~I~~KY~~~k~~~VS~~~~~~ 497 (498)
.++ .+.|...|..++|++.++|++|++.|.+++.+.+..+.++|++||++++|+.||.++||.
T Consensus 194 ~~~-~~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~Ky~~~~~~~vs~~~~~~ 256 (260)
T 2cch_B 194 TVT-GQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPE 256 (260)
T ss_dssp HHH-SCCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHHHTSGGGTTGGGSCCCS
T ss_pred HhC-CCcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHCcccccceeCCCCcc
Confidence 999 789999999999999999999999999999988878889999999999999999999996
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=1.6e-52 Score=417.98 Aligned_cols=252 Identities=34% Similarity=0.587 Sum_probs=238.3
Q ss_pred chhhhHHHHHHHHHHHHHhhCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchh
Q psy2129 195 NADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKL 274 (498)
Q Consensus 195 ~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ 274 (498)
.+.||++|||+||++.|.++.|+++|+..| +|++.||.+++|||++|+..|+++++|+|+||+|+|||++...+
T Consensus 2 ~~~eY~~di~~~l~~~E~~~~~~~~y~~~q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v----- 75 (269)
T 2b9r_A 2 LSSEYVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSV----- 75 (269)
T ss_dssp -----CCTTTTTHHHHHHTTCCCTTTTSSS-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCC-----
T ss_pred ChHHHHHHHHHHHHHHHHhhCCCcccccCC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-----
Confidence 478999999999999999999999999988 99999999999999999999999999999999999999999888
Q ss_pred hhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccc
Q psy2129 275 QLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDT 354 (498)
Q Consensus 275 ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~ 354 (498)
.+.++|++|+||||||||+||..||++++++.++++.
T Consensus 76 -------------------------------------------~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~ 112 (269)
T 2b9r_A 76 -------------------------------------------PKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNT 112 (269)
T ss_dssp -------------------------------------------CGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSS
T ss_pred -------------------------------------------cHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCC
Confidence 8899999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHH
Q psy2129 355 YTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYC 434 (498)
Q Consensus 355 yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~ 434 (498)
|++++|.+||+.||++|+|+++.|||++||.+|+...+.+.++..+|++++++++.++. +++|+||.||+||+++|+.+
T Consensus 113 ~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~-~~~~~Ps~iAaAai~lA~~~ 191 (269)
T 2b9r_A 113 YTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYD-MVHFPPSQIAAGAFSLALKI 191 (269)
T ss_dssp SCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGG-GSSSCTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhh-hhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred cCCCCCChhhHHHHhCCCHHHHHHHHHHHHHHHHhCCC--CchhHHHHhhCCCccCceeecCCCC
Q psy2129 435 LDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEA--ASQKAAYNKYKLNLWKNVSTVEART 497 (498)
Q Consensus 435 l~~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~~~~~~--~~~~~I~~KY~~~k~~~VS~~~~~~ 497 (498)
++ ...|...|..++||++++|.+|++.|.+++..... .+.++|++||++++|+.||.++++.
T Consensus 192 l~-~~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~~~~ai~~Ky~~~~~~~vs~~~~~~ 255 (269)
T 2b9r_A 192 LD-NGEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKNKYATSKHAKISTLPQLN 255 (269)
T ss_dssp HT-CCCSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCCSCCHHHHHTTSGGGTTGGGSSCCS
T ss_pred hC-CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHhcchhhCcccCCCCCC
Confidence 99 77899999999999999999999999999887654 4789999999999999999999874
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.8e-46 Score=371.72 Aligned_cols=233 Identities=21% Similarity=0.263 Sum_probs=213.3
Q ss_pred ccCCchhhhHHHHHHHHHHHHHhhCCCccccc-cCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhh
Q psy2129 191 CMLINADDYRDDIYQYLLKCERRIRPKANYMR-KQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSV 269 (498)
Q Consensus 191 ~~~~~~~eY~~di~~~l~~~E~~~~p~~~y~~-~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v 269 (498)
.|+..+.| +||| +|++.|.++.|.++|+. .|++|++.||.++||||++|+..|++.++|+|+||+|+||||+...+
T Consensus 12 ~dp~~~~~--~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v 88 (257)
T 1g3n_C 12 LDPTLCED--RIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQV 88 (257)
T ss_dssp ----CHHH--HHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCccccH--HHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCC
Confidence 46666666 9999 99999999999999985 89999999999999999999999999999999999999999999887
Q ss_pred hcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHh
Q psy2129 270 VRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVY 349 (498)
Q Consensus 270 ~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~ 349 (498)
.+.++||+|+||||||||+||..||+++++++
T Consensus 89 ------------------------------------------------~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~ 120 (257)
T 1g3n_C 89 ------------------------------------------------SKEHFQKTGSACLLVASKLRSLTPISTSSLCY 120 (257)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred ------------------------------------------------CHHHHHHHHHHHHHHHHHHccccCCCHHHHHH
Confidence 88999999999999999999999999999999
Q ss_pred hcccccCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCchh----HHHHHHHHHHHHhhcCccccCCChHHHHH
Q psy2129 350 ITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQS----VLYLAQYLSELALVSGDPFLQFLPSLIAC 425 (498)
Q Consensus 350 i~~~~yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~----i~~lA~~llelsL~d~~~fl~y~PS~IAa 425 (498)
++++.|++++|.+||+.||++|+|+++.|||++||.+|+..++.+.. +..+|++++++++.++. |++|+||.||+
T Consensus 121 ~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~-~~~~~PS~iAa 199 (257)
T 1g3n_C 121 AAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPL-TGSLPASIISA 199 (257)
T ss_dssp HTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTT-GGGSCHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcc-hhCcCHHHHHH
Confidence 99999999999999999999999999999999999999998877644 36789999999999998 99999999999
Q ss_pred HHHHHHHHHcCCC-----CCChhhHHHHhCCCHHHHHHHHHHHHHHHHhCCCCch
Q psy2129 426 SAIALARYCLDYK-----EAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQ 475 (498)
Q Consensus 426 AaL~LA~~~l~~~-----~~W~~~L~~~tgyt~~~I~~c~~~L~~l~~~~~~~~~ 475 (498)
||+++|+..++.. +.|...|...+|++.++|.+|++.|.+++.+.+.+..
T Consensus 200 Aai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~~~~~~l 254 (257)
T 1g3n_C 200 AGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSDFDLRIL 254 (257)
T ss_dssp HHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCCCCC-
T ss_pred HHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCHHhh
Confidence 9999999998742 5799999999999999999999999999987665443
No 4
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1.4e-45 Score=364.69 Aligned_cols=228 Identities=18% Similarity=0.318 Sum_probs=208.5
Q ss_pred cCCchhhhHHHHHHHHHHHHHhhCCCccccc-cCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhh
Q psy2129 192 MLINADDYRDDIYQYLLKCERRIRPKANYMR-KQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVV 270 (498)
Q Consensus 192 ~~~~~~eY~~di~~~l~~~E~~~~p~~~y~~-~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~ 270 (498)
|+..+.+ +|||+ |++.|.++.|+++|+. .|++|++.||.++||||++|+..|+++++|+|+||+|+||||+...+
T Consensus 14 dp~l~~~--~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v- 89 (254)
T 2f2c_A 14 DSTTMKD--PRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQG- 89 (254)
T ss_dssp CHHHHTC--HHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCC-
T ss_pred CcccccH--HHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCc-
Confidence 4555656 99999 9999999999999996 89999999999999999999999999999999999999999999888
Q ss_pred cchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhh
Q psy2129 271 RSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYI 350 (498)
Q Consensus 271 ~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i 350 (498)
.+.++||+|+||||||||+||..||++++++++
T Consensus 90 -----------------------------------------------~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~ 122 (254)
T 2f2c_A 90 -----------------------------------------------TKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYL 122 (254)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTT
T ss_pred -----------------------------------------------CHHHccHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 889999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCchh----HHHHHHHHHHHHhhcCccccCCChHHHHHH
Q psy2129 351 TDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQS----VLYLAQYLSELALVSGDPFLQFLPSLIACS 426 (498)
Q Consensus 351 ~~~~yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~----i~~lA~~llelsL~d~~~fl~y~PS~IAaA 426 (498)
+++.|++++|.+||+.||++|+|+++.|||++||.+|++.++.+.+ ++..|++++++++.++. |++|+||.||+|
T Consensus 123 ~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~-~~~~~PS~iAaA 201 (254)
T 2f2c_A 123 SCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPN-IALLSPGLICAG 201 (254)
T ss_dssp C---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGG-GTTSCHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcc-hhccCHHHHHHH
Confidence 9999999999999999999999999999999999999999987755 36689999999999999 999999999999
Q ss_pred HHHHHHHHcCCCCC-C---hhhHHHHhCCCHHHHHHHHHHHHHHHHhCC
Q psy2129 427 AIALARYCLDYKEA-W---PSSLADITGHSLDSLTECVKCLHEVHRKGE 471 (498)
Q Consensus 427 aL~LA~~~l~~~~~-W---~~~L~~~tgyt~~~I~~c~~~L~~l~~~~~ 471 (498)
|+++|+...+..+. | ...|..++||+.++|++|++.|.+++.+.+
T Consensus 202 ai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~~~~ 250 (254)
T 2f2c_A 202 GLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFSLYD 250 (254)
T ss_dssp HHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhCC
Confidence 99999998742333 6 788999999999999999999999987654
No 5
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=367.91 Aligned_cols=224 Identities=32% Similarity=0.479 Sum_probs=209.1
Q ss_pred hHHHHHHHHHHHHHhhCCCccccc-cCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhc
Q psy2129 199 YRDDIYQYLLKCERRIRPKANYMR-KQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLL 277 (498)
Q Consensus 199 Y~~di~~~l~~~E~~~~p~~~y~~-~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~ 277 (498)
|.+|||++|++.|.++.|.++|+. .|++|++.||.++||||++|+..|+++++|+|+||+||||||+...+
T Consensus 37 ~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v-------- 108 (306)
T 3g33_B 37 GDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPT-------- 108 (306)
T ss_dssp CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCC--------
T ss_pred chHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCC--------
Confidence 889999999999999999999998 79999999999999999999999999999999999999999999888
Q ss_pred cchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCH
Q psy2129 278 GTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTK 357 (498)
Q Consensus 278 ~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~ 357 (498)
.+.++||+|+||||||||+||..||.++++++++++.|++
T Consensus 109 ----------------------------------------~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~ 148 (306)
T 3g33_B 109 ----------------------------------------RKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSP 148 (306)
T ss_dssp ----------------------------------------CGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCH
T ss_pred ----------------------------------------cHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccH
Confidence 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCchh----HHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHH
Q psy2129 358 KQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQS----VLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARY 433 (498)
Q Consensus 358 ~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~----i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~ 433 (498)
++|++||+.||++|+|+++.|||++||.+|+..++.+.. +...|++++++++.++. |++|+||.||+|||++|+.
T Consensus 149 ~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~-~l~~~PS~IAaAai~lA~~ 227 (306)
T 3g33_B 149 RQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYT-FAMYPPSMIATGSIGAAVQ 227 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGG-GTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhh-hccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998876543 56788999999999999 9999999999999999999
Q ss_pred HcCCCCCC----hhhHHHHhCCCHHHHHHHHHHHHHHHHhCC
Q psy2129 434 CLDYKEAW----PSSLADITGHSLDSLTECVKCLHEVHRKGE 471 (498)
Q Consensus 434 ~l~~~~~W----~~~L~~~tgyt~~~I~~c~~~L~~l~~~~~ 471 (498)
.++..+.| ...|..++||+.++|++|+..|.+++.+..
T Consensus 228 ~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 228 GLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESL 269 (306)
T ss_dssp TCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC-
T ss_pred HhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 99854455 578889999999999999999999998643
No 6
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6e-45 Score=366.02 Aligned_cols=246 Identities=27% Similarity=0.480 Sum_probs=220.3
Q ss_pred cCCchhhhHHHHHHHHHHHHHhhCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh-hhhh
Q psy2129 192 MLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSL-MSVV 270 (498)
Q Consensus 192 ~~~~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~-~~v~ 270 (498)
++..+.+|.+|||++|++.|.++.|.++|+..|++|++.||.+++|||++|+..|++.++|+|+||+|||||++. ..+
T Consensus 10 ~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v- 88 (283)
T 1w98_B 10 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENV- 88 (283)
T ss_dssp SCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCC-
T ss_pred CcchhhcCHHHHHHHHHHHHHHhCCCchhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCC-
Confidence 344456999999999999999999999999999999999999999999999999999999999999999999998 466
Q ss_pred cchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhh
Q psy2129 271 RSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYI 350 (498)
Q Consensus 271 ~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i 350 (498)
.+.++||+|+||||||||+||..||.+++++++
T Consensus 89 -----------------------------------------------~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i 121 (283)
T 1w98_B 89 -----------------------------------------------VKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYV 121 (283)
T ss_dssp -----------------------------------------------CGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHT
T ss_pred -----------------------------------------------CHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 889999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCch-----------hHHHHHHHHHHHHhhcCccccCCC
Q psy2129 351 TDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQ-----------SVLYLAQYLSELALVSGDPFLQFL 419 (498)
Q Consensus 351 ~~~~yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~-----------~i~~lA~~llelsL~d~~~fl~y~ 419 (498)
+++.|++++|.+||+.||++|+|++++|||++||.+|++..+.+. .....+.+++++++.++. +++|+
T Consensus 122 ~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~-~l~~~ 200 (283)
T 1w98_B 122 TDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVD-CLEFP 200 (283)
T ss_dssp TTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGG-GGGSC
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhh-hhcCC
Confidence 999999999999999999999999999999999999998765432 233457789999999999 99999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCChhhHHHHhCCCHHHHHHHHHHHHHHHHhC---CCCchhHHHHhhCCCccCceeecCC
Q psy2129 420 PSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKG---EAASQKAAYNKYKLNLWKNVSTVEA 495 (498)
Q Consensus 420 PS~IAaAaL~LA~~~l~~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~~~~---~~~~~~~I~~KY~~~k~~~VS~~~~ 495 (498)
||.||+||+++|+ |.+.+...+||++++|++|++.|..++... ....... ++||..+.+++|++.++
T Consensus 201 PS~iAaAai~la~--------~~~~l~~~tg~~~~~i~~c~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 270 (283)
T 1w98_B 201 YGILAASALYHFS--------SSELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLKH-FRGVADEDAHNIQTHRD 270 (283)
T ss_dssp HHHHHHHHHHHTS--------CHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CTTSCGGGGGGBCCCCC
T ss_pred HHHHHHHHHHHHH--------ChHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcChHhhcc-hhccCHHhccCcccCcc
Confidence 9999999999873 688899999999999999999998877542 2223333 67999999999998764
No 7
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=7.1e-44 Score=352.80 Aligned_cols=216 Identities=20% Similarity=0.286 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHhhCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccc
Q psy2129 200 RDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGT 279 (498)
Q Consensus 200 ~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~ 279 (498)
.++||.+|++.|.++.| +..|++|++.||.++||||++|+.+|+++++|+|+||+|+||||+...+
T Consensus 21 ~d~i~~~l~~~E~~~~p----~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v---------- 86 (252)
T 1f5q_B 21 RQMIYRSEREHDARMVG----VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRI---------- 86 (252)
T ss_dssp HHHHHHHHHHHHHHHSS----SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHhCc----CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCc----------
Confidence 45999999999999988 4567899999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHH
Q psy2129 280 TALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQ 359 (498)
Q Consensus 280 r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~e 359 (498)
.+.++||+|+|||+||||+||.+||.++++++++++.|++++
T Consensus 87 --------------------------------------~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~ 128 (252)
T 1f5q_B 87 --------------------------------------DRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADK 128 (252)
T ss_dssp --------------------------------------CGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHH
T ss_pred --------------------------------------CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHH
Confidence 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCchh----HHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHc
Q psy2129 360 LLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQS----VLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCL 435 (498)
Q Consensus 360 I~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~----i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l 435 (498)
|++||+.||++|+|+++.|||++||.+|++..+.+.+ +...|.++++++++|+. |+.|+||.||+||+.++ +
T Consensus 129 i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~-~l~~~PS~iAaaa~~~~---l 204 (252)
T 1f5q_B 129 LLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGR-SAMKRPVLITLACMHLT---M 204 (252)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHH-HHTSCHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchh-hhccCHHHHHHHHHHHH---h
Confidence 9999999999999999999999999999999887643 46689999999999999 99999999999995444 3
Q ss_pred CCCCCC----hhhHHHHhCCCHHHHHHHHHHHHHHHHhCC
Q psy2129 436 DYKEAW----PSSLADITGHSLDSLTECVKCLHEVHRKGE 471 (498)
Q Consensus 436 ~~~~~W----~~~L~~~tgyt~~~I~~c~~~L~~l~~~~~ 471 (498)
+....| .+.|...+||+.+++.+|++.|.+++.+..
T Consensus 205 ~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~~ 244 (252)
T 1f5q_B 205 NQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVSFD 244 (252)
T ss_dssp TTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhC
Confidence 423334 567888999999999999999999886644
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=2.8e-43 Score=351.41 Aligned_cols=225 Identities=30% Similarity=0.464 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHhhCCCccccc-cCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhcc
Q psy2129 200 RDDIYQYLLKCERRIRPKANYMR-KQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLG 278 (498)
Q Consensus 200 ~~di~~~l~~~E~~~~p~~~y~~-~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~ 278 (498)
.+|||++|++.|.++.|+++|+. .|++|++.||.+++|||++|+..|+++++|+|+||+|||||++...+
T Consensus 24 ~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v--------- 94 (271)
T 2w96_A 24 NDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPV--------- 94 (271)
T ss_dssp -CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCC---------
T ss_pred HHHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCc---------
Confidence 67999999999999999999986 79999999999999999999999999999999999999999999888
Q ss_pred chhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHH
Q psy2129 279 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKK 358 (498)
Q Consensus 279 ~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~ 358 (498)
.+.++|++|+||||||||+||+.||++++++.++++.|+++
T Consensus 95 ---------------------------------------~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~ 135 (271)
T 2w96_A 95 ---------------------------------------KKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPE 135 (271)
T ss_dssp ---------------------------------------CTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHH
T ss_pred ---------------------------------------CHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHH
Confidence 88899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCchhH----HHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHH
Q psy2129 359 QLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSV----LYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYC 434 (498)
Q Consensus 359 eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~i----~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~ 434 (498)
+|.+||+.||++|+|++++|||++||.+|+..++.+... ...|++++++++.++. |++|+||.||+||+++|+..
T Consensus 136 eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~-~~~~~PS~iAaAai~lA~~~ 214 (271)
T 2w96_A 136 ELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVK-FISNPPSMVAAGSVVAAVQG 214 (271)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTH-HHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhh-hhccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887654 4568899999999998 99999999999999999988
Q ss_pred cCC----CCCC----hhhHHHHhCCCHHHHHHHHHHHHHHHHhCCCC
Q psy2129 435 LDY----KEAW----PSSLADITGHSLDSLTECVKCLHEVHRKGEAA 473 (498)
Q Consensus 435 l~~----~~~W----~~~L~~~tgyt~~~I~~c~~~L~~l~~~~~~~ 473 (498)
++. .+.| ...|..++|++.++|++|++.|.+++.+....
T Consensus 215 l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~~~~ 261 (271)
T 2w96_A 215 LNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSLRQ 261 (271)
T ss_dssp HHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTTTTS
T ss_pred hCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 752 2334 46788899999999999999999998765543
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=7.3e-34 Score=280.85 Aligned_cols=205 Identities=22% Similarity=0.325 Sum_probs=181.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHH
Q psy2129 227 INSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAIN 306 (498)
Q Consensus 227 i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~ 306 (498)
....||..+++||.+|+..|+++++|+++|++|||||++...+
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~------------------------------------- 68 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSF------------------------------------- 68 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCCh-------------------------------------
Confidence 4458999999999999999999999999999999999999887
Q ss_pred HHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhc--------------ccccC--HHHHHHHHHHHHHH
Q psy2129 307 YVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYIT--------------DDTYT--KKQLLKMETLILKV 370 (498)
Q Consensus 307 ~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~--------------~~~yt--~~eI~~mE~~IL~~ 370 (498)
.+.++|++|+||||||||+||. |+.+++++.++ ++.|+ +++|++||+.||++
T Consensus 69 -----------~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~ 136 (257)
T 2ivx_A 69 -----------TKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQT 136 (257)
T ss_dssp -----------TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------hhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999 99999997654 45566 89999999999999
Q ss_pred cCCCccccchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCC-------CCChh
Q psy2129 371 LNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYK-------EAWPS 443 (498)
Q Consensus 371 L~fdL~~pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~-------~~W~~ 443 (498)
|+|++.++||+.||..|++.++.+..+..+|+++++.++.....++.|+||.||+||+++|...++.. ..|..
T Consensus 137 L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~ 216 (257)
T 2ivx_A 137 LGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWE 216 (257)
T ss_dssp TTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGG
T ss_pred cccceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHH
Confidence 99999999999999999999999999999999999999853333899999999999999999998742 34765
Q ss_pred hHHHHhCCCHHHHHHHHHHHHHHHHhCCCCchhHHHHhhC
Q psy2129 444 SLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYK 483 (498)
Q Consensus 444 ~L~~~tgyt~~~I~~c~~~L~~l~~~~~~~~~~~I~~KY~ 483 (498)
.+ ..+++.++|.+|+..|.+++...+. ..+.|+.++.
T Consensus 217 ~~--~~~~~~~~l~~~~~~i~~~~~~~~~-~l~~~~~~~~ 253 (257)
T 2ivx_A 217 YV--DPTVTLELLDELTHEFLQILEKTPN-RLKKIRNWRA 253 (257)
T ss_dssp GT--CSSCCHHHHHHHHHHHHHHHHTSHH-HHHHHHHHHH
T ss_pred Hh--CCCCCHHHHHHHHHHHHHHHHhChH-HhhHHHHhhh
Confidence 44 3589999999999999999987664 6677877664
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.4e-33 Score=275.86 Aligned_cols=199 Identities=21% Similarity=0.369 Sum_probs=174.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHH
Q psy2129 224 QNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHL 303 (498)
Q Consensus 224 q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~l 303 (498)
+++++..||..+++||.+++..++++++|+++|++|||||++...+
T Consensus 33 ~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~---------------------------------- 78 (258)
T 2i53_A 33 DPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSF---------------------------------- 78 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT----------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCh----------------------------------
Confidence 4567789999999999999999999999999999999999999887
Q ss_pred HHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhc-----cccc------CHHHHHHHHHHHHHHcC
Q psy2129 304 AINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYIT-----DDTY------TKKQLLKMETLILKVLN 372 (498)
Q Consensus 304 Ai~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~-----~~~y------t~~eI~~mE~~IL~~L~ 372 (498)
.+.++|++|+||||||||+||. |+.+++++..+ ++.| ++++|++||+.||++|+
T Consensus 79 --------------~~~~~qlv~~acL~lA~K~eE~-~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~ 143 (258)
T 2i53_A 79 --------------KQFPRYVTGACCLFLAGKVEET-PKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIK 143 (258)
T ss_dssp --------------TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred --------------hhcCHHHHHHHHHHHHHccccc-cccHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCC
Confidence 8889999999999999999995 88999998643 3445 48899999999999999
Q ss_pred CCccccchhhhHHHHHHhCCCch----hHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCC-CCChhh---
Q psy2129 373 FDLNIPTVHSFICHITVSGHLDQ----SVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYK-EAWPSS--- 444 (498)
Q Consensus 373 fdL~~pTp~~FL~~fl~~~~~~~----~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~-~~W~~~--- 444 (498)
|++.++||+.||.+|++.++.+. .+..+|+++++.++.++. +++|+||.||+|||++|..+++.. +.|...
T Consensus 144 f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~-~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~ 222 (258)
T 2i53_A 144 FDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTL-SLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMY 222 (258)
T ss_dssp TCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTG-GGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCS
T ss_pred CceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCc-hhccChHHHHHHHHHHHHHHhCCCCCccccCCCc
Confidence 99999999999999999998876 688999999999999998 999999999999999999998742 334321
Q ss_pred ---HHH-HhCCCHHHHHHHHHHHHHHHHhCCC
Q psy2129 445 ---LAD-ITGHSLDSLTECVKCLHEVHRKGEA 472 (498)
Q Consensus 445 ---L~~-~tgyt~~~I~~c~~~L~~l~~~~~~ 472 (498)
... .+|++.++|.+|+..|.++|.+...
T Consensus 223 ~~W~~~~~~~~~~~~l~~~~~~il~ly~~~~~ 254 (258)
T 2i53_A 223 RRWWEQFVQDVPVDVLEDICHQILDLYSQGKQ 254 (258)
T ss_dssp SCGGGGTSSSCCHHHHHHHHHHHHTTTSSSCC
T ss_pred ccHHHHhccCCCHHHHHHHHHHHHHHHhcccc
Confidence 122 3699999999999999998876543
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=275.64 Aligned_cols=205 Identities=16% Similarity=0.195 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHH
Q psy2129 229 SEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYV 308 (498)
Q Consensus 229 ~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~f 308 (498)
..||..+++||.+|+..+++.++|+++|++|||||++...+
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~--------------------------------------- 80 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSL--------------------------------------- 80 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCT---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCc---------------------------------------
Confidence 47899999999999999999999999999999999998887
Q ss_pred HHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcc--------------cccCHHHHHHHHHHHHHHcCCC
Q psy2129 309 DRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITD--------------DTYTKKQLLKMETLILKVLNFD 374 (498)
Q Consensus 309 DRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~--------------~~yt~~eI~~mE~~IL~~L~fd 374 (498)
.+.+++++|+||||||||+||+.+|.+++++.+++ ..+++++|++||+.||++|+|+
T Consensus 81 ---------~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~ 151 (285)
T 3rgf_B 81 ---------KSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCC 151 (285)
T ss_dssp ---------TTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTC
T ss_pred ---------hhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCC
Confidence 88999999999999999999998888999887653 2478999999999999999999
Q ss_pred ccccchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCC-CCChhhHHHHhCCCH
Q psy2129 375 LNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYK-EAWPSSLADITGHSL 453 (498)
Q Consensus 375 L~~pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~-~~W~~~L~~~tgyt~ 453 (498)
+.++||+.||..|++.++.+..+..+|+++++.++.+.. ++.|+||.||+|||++|..+++.. ..|. ..+|++.
T Consensus 152 l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~-~l~~~Ps~IAaAaiylA~~~~~~~~~~W~----~~~~~~~ 226 (285)
T 3rgf_B 152 LIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDL-CLLYPPFMIALACLHVACVVQQKDARQWF----AELSVDM 226 (285)
T ss_dssp CCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSH-HHHSCHHHHHHHHHHHHHHHTTCCCHHHH----HTSCSCH
T ss_pred eEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCh-hhccCHHHHHHHHHHHHHHHcCCChhhHH----HHHCCCH
Confidence 999999999999999999999999999999999999988 999999999999999999999831 3343 3469999
Q ss_pred HHHHHHHHHHHHHHHh----CCCCchhHHHHhhCCCc
Q psy2129 454 DSLTECVKCLHEVHRK----GEAASQKAAYNKYKLNL 486 (498)
Q Consensus 454 ~~I~~c~~~L~~l~~~----~~~~~~~~I~~KY~~~k 486 (498)
++|.+|+..|+++|.+ .......++..|+..++
T Consensus 227 ~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k~~~~~ 263 (285)
T 3rgf_B 227 EKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPK 263 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHhcccCchhhhHHHHHHhCCCCC
Confidence 9999999999999876 23345677888888877
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.98 E-value=7.6e-32 Score=263.33 Aligned_cols=187 Identities=15% Similarity=0.163 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy2129 232 RSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRF 311 (498)
Q Consensus 232 R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRf 311 (498)
|..+++||.+++..++++++|+++|++|+|||++...+
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~------------------------------------------ 65 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNE------------------------------------------ 65 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCS------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc------------------------------------------
Confidence 99999999999999999999999999999999998877
Q ss_pred hhhccccc-hhhhhhhhhhhhhhhcccccCCCChhHHHhhccc------ccCHHHHHHHHHHHHHHcCCCccccchhhhH
Q psy2129 312 LSLMSVVR-SKLQLLGTTALFVASKYEEIYPPEVNEFVYITDD------TYTKKQLLKMETLILKVLNFDLNIPTVHSFI 384 (498)
Q Consensus 312 l~~~~i~~-~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~------~yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL 384 (498)
.+ .+++++|+||||||||+||. |+.+++++.++++ .+++++|.+||+.||++|+|++.++||+.||
T Consensus 66 ------~~~~~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l 138 (235)
T 1zp2_A 66 ------EKGFSLEALVATCIYLSCKVEEC-PVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSL 138 (235)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHH
T ss_pred ------ccccCHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHccchhhccHHHHHHHHHHHHHHCCCcEEecChHHHH
Confidence 77 89999999999999999995 8899999998865 6899999999999999999999999999999
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCC-CCChhhHHHHhCCCHHHHHHHHHHH
Q psy2129 385 CHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYK-EAWPSSLADITGHSLDSLTECVKCL 463 (498)
Q Consensus 385 ~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~-~~W~~~L~~~tgyt~~~I~~c~~~L 463 (498)
..|++.++.+.++...|+++++.++.+.. +++|+||.||+|||++|..+.+.. +.|...++ |++.++|.+|+..|
T Consensus 139 ~~~~~~~~~~~~~~~~A~~~l~~s~~~~~-~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~i 214 (235)
T 1zp2_A 139 EQAFHDGIINQKQLEFAWSIVNDSYASSL-CLMAHPHQLAYAALLISCCNDENTIPKLLDLIK---STDAFKVILCVQRI 214 (235)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHTTTTG-GGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHCC---HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCc-hhccCHHHHHHHHHHHHHHhcCCCCCCCcchhh---cCCHHHHHHHHHHH
Confidence 99999999999999999999999999988 999999999999999999988721 13444443 99999999999999
Q ss_pred HHHHHhCC
Q psy2129 464 HEVHRKGE 471 (498)
Q Consensus 464 ~~l~~~~~ 471 (498)
.++|...+
T Consensus 215 ~~ly~~~~ 222 (235)
T 1zp2_A 215 ISIYYFED 222 (235)
T ss_dssp HHHHTSSS
T ss_pred HHHHhhCC
Confidence 99987644
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.97 E-value=8.5e-32 Score=278.79 Aligned_cols=203 Identities=23% Similarity=0.361 Sum_probs=177.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHH
Q psy2129 226 DINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAI 305 (498)
Q Consensus 226 ~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi 305 (498)
+....||..+++||.+|+..|+|.++|+++|++|||||++...+
T Consensus 32 ~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv------------------------------------ 75 (358)
T 2pk2_A 32 DKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSF------------------------------------ 75 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCT------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc------------------------------------
Confidence 34458999999999999999999999999999999999999887
Q ss_pred HHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhc--------------ccccC--HHHHHHHHHHHHH
Q psy2129 306 NYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYIT--------------DDTYT--KKQLLKMETLILK 369 (498)
Q Consensus 306 ~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~--------------~~~yt--~~eI~~mE~~IL~ 369 (498)
.+.++|+||+||||||||+||+ |+.+++++.++ ++.|+ +++|++||+.||+
T Consensus 76 ------------~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~ 142 (358)
T 2pk2_A 76 ------------TRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQ 142 (358)
T ss_dssp ------------TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHH
T ss_pred ------------ccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 8899999999999999999999 89999998654 34565 8999999999999
Q ss_pred HcCCCccccchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCC-------CCCh
Q psy2129 370 VLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYK-------EAWP 442 (498)
Q Consensus 370 ~L~fdL~~pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~-------~~W~ 442 (498)
+|+|++.++||+.||..|++.++.+..+..+|+++++.++.....++.|+||.||+|||++|..+++.. ..|.
T Consensus 143 ~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~ 222 (358)
T 2pk2_A 143 TLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWW 222 (358)
T ss_dssp HTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTT
T ss_pred HcCCceeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchH
Confidence 999999999999999999999999999999999999999965444899999999999999999998732 3465
Q ss_pred hhHHHHhCCCHHHHHHHHHHHHHHHHhCCCCchhHHHH
Q psy2129 443 SSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYN 480 (498)
Q Consensus 443 ~~L~~~tgyt~~~I~~c~~~L~~l~~~~~~~~~~~I~~ 480 (498)
..+ ..+++.++|.+|+..|.+++...+. ..+.|..
T Consensus 223 ~~~--~~~vt~~~l~~i~~~il~~y~~~~~-~L~~i~~ 257 (358)
T 2pk2_A 223 EYV--DATVTLELLDELTHEFLQILEKTPN-RLKRIWN 257 (358)
T ss_dssp TTS--CSSCCHHHHHHHHHHHHHHTTTCTT-HHHHHHH
T ss_pred HHH--hccCCHHHHHHHHHHHHHHHHhCcc-cccchhc
Confidence 544 2589999999999999999877664 3444443
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.96 E-value=3e-29 Score=256.36 Aligned_cols=202 Identities=20% Similarity=0.217 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy2129 230 EMRSVLVDWLIEVAEEYK--MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINY 307 (498)
Q Consensus 230 ~~R~~lvdWl~ev~~~~~--l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~ 307 (498)
.+|...++||.+|+..|+ +.++|+++|++|||||++...+
T Consensus 55 ~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~-------------------------------------- 96 (323)
T 1jkw_A 55 TLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSV-------------------------------------- 96 (323)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCT--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCCh--------------------------------------
Confidence 578888999999999999 9999999999999999988877
Q ss_pred HHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhccc-----ccCHHHHHHHHHHHHHHcCCCccccchhh
Q psy2129 308 VDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDD-----TYTKKQLLKMETLILKVLNFDLNIPTVHS 382 (498)
Q Consensus 308 fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~-----~yt~~eI~~mE~~IL~~L~fdL~~pTp~~ 382 (498)
.+.++++||+||||||||+||+ |+.+++++..+.+ .|++++|++||+.||++|+|++.++||+.
T Consensus 97 ----------~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~ 165 (323)
T 1jkw_A 97 ----------MEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYR 165 (323)
T ss_dssp ----------TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHH
T ss_pred ----------hhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHH
Confidence 8889999999999999999998 7899999986643 47789999999999999999999999999
Q ss_pred hHHHHHHhC-------CCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCC-CCChhhHHHH--hCCC
Q psy2129 383 FICHITVSG-------HLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYK-EAWPSSLADI--TGHS 452 (498)
Q Consensus 383 FL~~fl~~~-------~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~-~~W~~~L~~~--tgyt 452 (498)
||..|+..+ +.+..+...|+++++.++.+.. ++.|+||.||+|||++|...++.. +.|...+... ++++
T Consensus 166 ~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~-~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~ 244 (323)
T 1jkw_A 166 PFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDA-YLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTC 244 (323)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTH-HHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccH-HHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhcccccccc
Confidence 999998653 3345678999999999999988 999999999999999999998842 6788876554 7889
Q ss_pred HHHHHHHHHHHHHHHHhCCCC---chhHHHHh
Q psy2129 453 LDSLTECVKCLHEVHRKGEAA---SQKAAYNK 481 (498)
Q Consensus 453 ~~~I~~c~~~L~~l~~~~~~~---~~~~I~~K 481 (498)
.++|.+|+..|..++...... ..++|.+|
T Consensus 245 ~~~l~~~~~~i~~l~~~~~~~~~~~~k~i~~K 276 (323)
T 1jkw_A 245 LSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQK 276 (323)
T ss_dssp THHHHHHHHHHHHHHHTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 999999999999998775333 33445555
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.95 E-value=7.5e-27 Score=223.49 Aligned_cols=180 Identities=17% Similarity=0.206 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHH
Q psy2129 283 FVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLK 362 (498)
Q Consensus 283 ~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~ 362 (498)
...+|.++|.+|+|++.|+++|+.||+||+....+...+.+++++||||||||+||. |++++|++.+++ +++++|.+
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~~~i~~ 84 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISKKEIGR 84 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999998 899999999988 89999999
Q ss_pred HHHHHHHHcCCCccccchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCCCh
Q psy2129 363 METLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWP 442 (498)
Q Consensus 363 mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~W~ 442 (498)
+|+.||+.|+|++..++|+.||.+|+..++.+.++..+|+++++.++.+.. +++++|+.||+|||++|..+.+ .+.|.
T Consensus 85 ~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l-~~g~~P~~IAaAaiylA~~~~~-~~~~~ 162 (207)
T 1c9b_A 85 CFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL-VPGRSPISVAAAAIYMASQASA-EKRTQ 162 (207)
T ss_dssp HHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC-STTCCHHHHHHHHHHHHHHTSS-SCCCH
T ss_pred HHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-cCCCChHHHHHHHHHHHHHHHC-CCCCH
Confidence 999999999999999999999999999999999999999999999998776 8999999999999999999999 77899
Q ss_pred hhHHHHhCCCHHHHHHHHHHHHHHH
Q psy2129 443 SSLADITGHSLDSLTECVKCLHEVH 467 (498)
Q Consensus 443 ~~L~~~tgyt~~~I~~c~~~L~~l~ 467 (498)
..+...+|++..+|++|++.|.+..
T Consensus 163 ~~i~~~~~v~~~tI~~~~~~l~~~l 187 (207)
T 1c9b_A 163 KEIGDIAGVADVTIRQSYRLIYPRA 187 (207)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHGGGH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998754
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.91 E-value=3.1e-23 Score=197.22 Aligned_cols=180 Identities=13% Similarity=0.104 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHH
Q psy2129 283 FVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLK 362 (498)
Q Consensus 283 ~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~ 362 (498)
...+|.++|.+++|++.+.++|..+|+||+....+.....+.++++|+|||||.++. |.+++|+..+++ +++.+|.+
T Consensus 12 a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~-p~~l~di~~~~~--v~~~~i~~ 88 (200)
T 1ais_B 12 ALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKV-PRTLDEIADIAR--VDKKEIGR 88 (200)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTC-CCCHHHHHHHTT--SCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHC--CCHHHHHH
Confidence 456788899999999999999999999999999888899999999999999999995 999999999887 89999999
Q ss_pred HHHHHHHHcCCCccc--cchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCC
Q psy2129 363 METLILKVLNFDLNI--PTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEA 440 (498)
Q Consensus 363 mE~~IL~~L~fdL~~--pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~ 440 (498)
+++.|++.|+|++.. ++|..|+.+|+..++.+..+...|+++++.+..+.. +.+++|+.||+|||++|.+..+ .+.
T Consensus 89 ~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~-~~gr~P~~iAaAaly~A~~~~~-~~~ 166 (200)
T 1ais_B 89 SYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGL-TSGKSPAGLVAAALYIASLLEG-EKR 166 (200)
T ss_dssp HHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-CTTSCHHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCc-ccCCCHHHHHHHHHHHHHHHhC-CCC
Confidence 999999999999999 999999999999999999999999999999999887 8999999999999999999999 788
Q ss_pred ChhhHHHHhCCCHHHHHHHHHHHHHHH
Q psy2129 441 WPSSLADITGHSLDSLTECVKCLHEVH 467 (498)
Q Consensus 441 W~~~L~~~tgyt~~~I~~c~~~L~~l~ 467 (498)
|...+...+|+++.+|+.|++.|.+.+
T Consensus 167 t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 167 TQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999865
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.3e-20 Score=194.04 Aligned_cols=178 Identities=12% Similarity=0.083 Sum_probs=80.0
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHHHH
Q psy2129 285 ASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKME 364 (498)
Q Consensus 285 a~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~mE 364 (498)
..|.+++..|+|+..+..+|..+|+|++....+.....+.+++||||||||.+++ |.+++|+..+++ +++++|.+++
T Consensus 131 ~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~keIgr~~ 207 (345)
T 3k7a_M 131 AKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEFGKTL 207 (345)
T ss_dssp HHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999988 999999999987 8999999999
Q ss_pred HHHHHHcC------------CCccccchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHH
Q psy2129 365 TLILKVLN------------FDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALAR 432 (498)
Q Consensus 365 ~~IL~~L~------------fdL~~pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~ 432 (498)
+.|++.|+ +++..++|..||.+|+..++++.++...|+++++.+..+.. +.+++|+.||+||||+|.
T Consensus 208 ~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l-~~Gr~P~~IAaAaIylAa 286 (345)
T 3k7a_M 208 NIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKE-IAGKSPITIAVVSIYLNI 286 (345)
T ss_dssp HHHHHHHTCC----------------------------------------------------------------------
T ss_pred HHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhch-hcCCCHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999999998876 899999999999999999
Q ss_pred HHcCCCCCChhhHHHHhCCCHHHHHHHHHHHHHHH
Q psy2129 433 YCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVH 467 (498)
Q Consensus 433 ~~l~~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~ 467 (498)
.+++ ...|...+...+|+++..|+.+++.|.+..
T Consensus 287 ~~~~-~~~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 287 LLFQ-IPITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp -----------------------------------
T ss_pred HHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9998 778999999999999999999999999865
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.58 E-value=1.2e-15 Score=157.02 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHHHHH
Q psy2129 284 VASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKM 363 (498)
Q Consensus 284 va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI~~m 363 (498)
...|.++|..|+||..+..+|..+|++++....+.......++++|||||||.++. |.+++|+..+++ .++.+|.+.
T Consensus 130 ~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~-prtl~eI~~~~~--v~~keigr~ 206 (345)
T 4bbr_M 130 FAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEFGKT 206 (345)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHHHT--CCTTHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-CccHHHHHHHhC--CCHHHHHHH
Confidence 44677889999999999999999999999988888889999999999999999886 999999998877 789999999
Q ss_pred HHHHHHHcCCC------------ccccchhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHH
Q psy2129 364 ETLILKVLNFD------------LNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALA 431 (498)
Q Consensus 364 E~~IL~~L~fd------------L~~pTp~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA 431 (498)
.+.|.+.|+.. +...+|..|+.+|+..++++.++...|..+++.+..+.. ..+.+|+.||+||||+|
T Consensus 207 ~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i-~~GR~P~~IAAAaIylA 285 (345)
T 4bbr_M 207 LNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKE-IAGKSPITIAVVSIYLN 285 (345)
T ss_dssp HHHHHHCC------------------------------------------------------------------------
T ss_pred HHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccc-ccCCChHHHHHHHHHHH
Confidence 99999999974 677899999999999999999999999999998887765 78999999999999999
Q ss_pred HHHcCCCCCChhhHHHHhCCCHHHHHHHHHHHHHHH
Q psy2129 432 RYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVH 467 (498)
Q Consensus 432 ~~~l~~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~ 467 (498)
..+.+ ...-...+...+|+++..|+..++.|.+..
T Consensus 286 a~l~g-~~~t~~eIa~v~~Vse~TIr~rykel~~~~ 320 (345)
T 4bbr_M 286 ILLFQ-IPITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ------------------------------------
T ss_pred HHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99998 666677889999999999999999998754
No 19
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=98.77 E-value=4.3e-08 Score=93.08 Aligned_cols=139 Identities=12% Similarity=0.081 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHH---------------------
Q psy2129 231 MRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE--------------------- 289 (498)
Q Consensus 231 ~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~e--------------------- 289 (498)
......+||.+++..++++..++..|+.|++||+....+...+.++++.+++++|...+
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~~i~ 83 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIG 83 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHHHHH
Confidence 45678899999999999999999999999999999988877778999999999998875
Q ss_pred -------------------------HHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCCh
Q psy2129 290 -------------------------VAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEV 344 (498)
Q Consensus 290 -------------------------v~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l 344 (498)
.+..++++.++..+|..++++.+...-+.......||+||+++|++..+. +.+.
T Consensus 84 ~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~-~~~~ 162 (207)
T 1c9b_A 84 RCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAE-KRTQ 162 (207)
T ss_dssp HHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSS-CCCH
T ss_pred HHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCC-CCCH
Confidence 57788899999999999999988776677788999999999999999875 6677
Q ss_pred hHHHhhcccccCHHHHHHHHHHHHHHcC
Q psy2129 345 NEFVYITDDTYTKKQLLKMETLILKVLN 372 (498)
Q Consensus 345 ~dlv~i~~~~yt~~eI~~mE~~IL~~L~ 372 (498)
+++...++ ++..+|.+.-+.|++.++
T Consensus 163 ~~i~~~~~--v~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 163 KEIGDIAG--VADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHHT--CCHHHHHHHHHHHGGGHH
T ss_pred HHHHHHhC--CCHHHHHHHHHHHHHHHH
Confidence 88887776 788899988888877665
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.64 E-value=4.4e-07 Score=85.51 Aligned_cols=143 Identities=13% Similarity=0.076 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHH---------------------
Q psy2129 231 MRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE--------------------- 289 (498)
Q Consensus 231 ~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~e--------------------- 289 (498)
......+||.+++..+++++.+...|..|++|++....+...+.+.++.+++++|...+
T Consensus 8 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i~ 87 (200)
T 1ais_B 8 NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIG 87 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHH
Confidence 35688999999999999999999999999999999877754556677777777776654
Q ss_pred ---------------------------HHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCC
Q psy2129 290 ---------------------------VAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPP 342 (498)
Q Consensus 290 ---------------------------v~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp 342 (498)
.+..++++.++..+|..++.+.....-+.......+++||+++|++.... +.
T Consensus 88 ~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~-~~ 166 (200)
T 1ais_B 88 RSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KR 166 (200)
T ss_dssp HHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CC
T ss_pred HHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-CC
Confidence 46677888899999999999999877778888999999999999998775 67
Q ss_pred ChhHHHhhcccccCHHHHHHHHHHHHHHcCCCcc
Q psy2129 343 EVNEFVYITDDTYTKKQLLKMETLILKVLNFDLN 376 (498)
Q Consensus 343 ~l~dlv~i~~~~yt~~eI~~mE~~IL~~L~fdL~ 376 (498)
+.+++..+++ ++..+|.+.-+.+.+.|+.++.
T Consensus 167 t~~ei~~~~~--vs~~ti~~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 167 TQREVAEVAR--VTEVTVRNRYKELVEKLKIKVP 198 (200)
T ss_dssp CHHHHHHHHT--CCHHHHHHHHHHHHHHHTCCCC
T ss_pred CHHHHHHHhC--CCHHHHHHHHHHHHHHcCCCCC
Confidence 8899988877 7899999999999999997653
No 21
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.06 E-value=4.6e-05 Score=76.06 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=101.6
Q ss_pred hhhhHHHHHHHHHHHHHhhCCC---------ccccccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh
Q psy2129 196 ADDYRDDIYQYLLKCERRIRPK---------ANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSL 266 (498)
Q Consensus 196 ~~eY~~di~~~l~~~E~~~~p~---------~~y~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~ 266 (498)
+-++...+++.+.+.-....+. ......-|.|+ +-+|+..+...-.++.+++-+|..|+||+...
T Consensus 35 lv~~IA~~L~~LI~~Nd~~~~~~~~~~~~~t~F~~~~~P~IS------I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~ 108 (293)
T 2pmi_B 35 LVVLISRMLVSLIAINENSATKKSDDQITLTRYHSKIPPNIS------IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTV 108 (293)
T ss_dssp HHHHHHHHHHHHHHHHHCC--------CCCCTTCCSSCCSSC------HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccccccccccccccccCCCCCCCc------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 3467777777777754433211 11222345554 55789999999999999999999999998764
Q ss_pred hhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhH
Q psy2129 267 MSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNE 346 (498)
Q Consensus 267 ~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~d 346 (498)
... ..+......-+-++||.+|+|+-+.....-+.
T Consensus 109 ~p~---------------------------------------------~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~ 143 (293)
T 2pmi_B 109 YPD---------------------------------------------FTLNSLTAHRFLLTATTVATKGLCDSFSTNAH 143 (293)
T ss_dssp CTT---------------------------------------------CCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHH
T ss_pred CCC---------------------------------------------CccCCchHHHHHHHHHHHHHHhccccccChhH
Confidence 321 01244556667799999999998877777777
Q ss_pred HHhhcccccCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhC
Q psy2129 347 FVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSG 391 (498)
Q Consensus 347 lv~i~~~~yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~ 391 (498)
+..+++ ++.+|+-.||+..|..|+|++.+. +..|..+++...
T Consensus 144 wAkVgG--isl~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~ 185 (293)
T 2pmi_B 144 YAKVGG--VRCHELNILENDFLKRVNYRIIPR-DHNITLCSIEQK 185 (293)
T ss_dssp HHHHHT--SCHHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSC
T ss_pred hhhccC--cCHHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHh
Confidence 777754 899999999999999999999766 555666666553
No 22
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.58 E-value=0.00031 Score=69.83 Aligned_cols=75 Identities=24% Similarity=0.388 Sum_probs=55.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhc-cchhHHHHHHHHHHHHhhchhHHH
Q psy2129 223 KQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLL-GTTALFVASIIEVAEEYKMHNETL 301 (498)
Q Consensus 223 ~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~-~~r~l~va~i~ev~~~l~L~~~Tl 301 (498)
..|++..+....+..+|.+.-..+..++. |+..+. .+- ..|+.++.|+.+++.+++++++|+
T Consensus 9 ~~p~l~~~y~~~i~~~l~~~E~~~~~~~~-----------y~~~q~------~i~~~~R~~lv~wl~~v~~~~~l~~~tl 71 (283)
T 1w98_B 9 PLPVLSWANREEVWKIMLNKEKTYLRDQH-----------FLEQHP------LLQPKMRAILLDWLMEVCEVYKLHRETF 71 (283)
T ss_dssp CSCCCSSSCHHHHHHHHHHHTTTSCCCTT-----------GGGGCT------TCCHHHHHHHHHHHHHHHHHTTCBHHHH
T ss_pred CCcchhhcCHHHHHHHHHHHHHHhCCCch-----------hhccCC------CCCHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 34667667778888888876655544332 332211 121 259999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy2129 302 HLAINYVDRFLSL 314 (498)
Q Consensus 302 ~lAi~~fDRfl~~ 314 (498)
++|++|+|||++.
T Consensus 72 ~lAv~~lDRfls~ 84 (283)
T 1w98_B 72 YLAQDFFDRYMAT 84 (283)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
No 23
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=97.36 E-value=0.00063 Score=66.60 Aligned_cols=67 Identities=37% Similarity=0.600 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhh-ccchhHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q psy2129 231 MRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQL-LGTTALFVASIIEVAEEYKMHNETLHLAINYVD 309 (498)
Q Consensus 231 ~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql-~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fD 309 (498)
+...+.++|.+.-..+...+ + |+..+. .+ ...|+.++.|+.+++.+|+++++|+++|++|+|
T Consensus 6 Y~~di~~~l~~~E~~~~p~~-------~----y~~~q~------~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lD 68 (260)
T 2cch_B 6 YHEDIHTYLREMEVKCKPKV-------G----YMKKQP------DITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 68 (260)
T ss_dssp THHHHHHHHHHHHHHTCCCT-------T----GGGGCS------SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCc-------h----hhhcCC------CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45567777776655554332 1 332211 11 124999999999999999999999999999999
Q ss_pred HHhhh
Q psy2129 310 RFLSL 314 (498)
Q Consensus 310 Rfl~~ 314 (498)
||++.
T Consensus 69 Rfls~ 73 (260)
T 2cch_B 69 RFLSS 73 (260)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 99963
No 24
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=97.36 E-value=0.00083 Score=66.15 Aligned_cols=36 Identities=19% Similarity=0.539 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhh
Q psy2129 279 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 314 (498)
Q Consensus 279 ~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~ 314 (498)
.|+.++.|+.+++.+|+++++|+++|++|+|||++.
T Consensus 37 ~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~ 72 (269)
T 2b9r_A 37 MRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQN 72 (269)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 499999999999999999999999999999999963
No 25
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.33 E-value=0.0013 Score=63.23 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhh
Q psy2129 280 TALFVASIIEVAEEYKMHNETLHLAINYVDRFLS 313 (498)
Q Consensus 280 r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~ 313 (498)
|...+.||.+++.+|+|+++|+++|++|||||+.
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~ 61 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYML 61 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999985
No 26
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=97.24 E-value=0.0013 Score=64.81 Aligned_cols=68 Identities=29% Similarity=0.426 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy2129 232 RSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRF 311 (498)
Q Consensus 232 R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRf 311 (498)
...++.+|.+.-..+.-++. |++.. ...+ -...|+.++.|+.+++.+++++++|+++|++|+|||
T Consensus 24 ~~~i~~~l~~~E~~~~p~~~-------y~~~~--q~~i------~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRf 88 (271)
T 2w96_A 24 NDRVLRAMLKAEETCAPSVS-------YFKCV--QKEV------LPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRF 88 (271)
T ss_dssp -CHHHHHHHHHHHHTCCCTT-------HHHHT--CSSC------CHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCch-------HHHhc--CCcC------CHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHh
Confidence 34677888877666654432 22110 0011 122589999999999999999999999999999999
Q ss_pred hhh
Q psy2129 312 LSL 314 (498)
Q Consensus 312 l~~ 314 (498)
++.
T Consensus 89 ls~ 91 (271)
T 2w96_A 89 LSL 91 (271)
T ss_dssp HTT
T ss_pred CCc
Confidence 863
No 27
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.05 E-value=0.0037 Score=62.09 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=33.1
Q ss_pred chhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhh
Q psy2129 279 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLS 313 (498)
Q Consensus 279 ~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~ 313 (498)
.|...+.||.+++.+|+|+++|+++|++|||||+.
T Consensus 42 ~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~ 76 (285)
T 3rgf_B 42 LQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYA 76 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999985
No 28
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=96.87 E-value=0.00062 Score=66.72 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhh
Q psy2129 278 GTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLS 313 (498)
Q Consensus 278 ~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~ 313 (498)
..|+.++.|+.+++.+|+++++|+++||+|+|||++
T Consensus 47 ~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs 82 (252)
T 1f5q_B 47 QYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFL 82 (252)
T ss_dssp SHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhc
Confidence 359999999999999999999999999999999996
No 29
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=96.62 E-value=0.0013 Score=64.15 Aligned_cols=36 Identities=28% Similarity=0.514 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhh
Q psy2129 279 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 314 (498)
Q Consensus 279 ~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~ 314 (498)
.|+.++.|+.+++.+|+++++|+++|++|+|||++.
T Consensus 50 ~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~ 85 (257)
T 1g3n_C 50 MRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLI 85 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHcc
Confidence 499999999999999999999999999999999974
No 30
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=96.59 E-value=0.0013 Score=64.13 Aligned_cols=36 Identities=14% Similarity=0.432 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhh
Q psy2129 279 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 314 (498)
Q Consensus 279 ~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~ 314 (498)
.|+.++.|+.+++.+|+++++|+++|++|+|||++.
T Consensus 51 ~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~ 86 (254)
T 2f2c_A 51 NRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCK 86 (254)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHcc
Confidence 499999999999999999999999999999999964
No 31
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=96.47 E-value=0.0017 Score=65.32 Aligned_cols=36 Identities=36% Similarity=0.608 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhh
Q psy2129 279 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 314 (498)
Q Consensus 279 ~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~ 314 (498)
.|+.++.||.+++.+|+|+++|+++|++|||||++.
T Consensus 70 ~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~ 105 (306)
T 3g33_B 70 MRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSC 105 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhc
Confidence 599999999999999999999999999999999963
No 32
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=96.00 E-value=0.0047 Score=60.04 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhh
Q psy2129 279 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 314 (498)
Q Consensus 279 ~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~ 314 (498)
.|...+.||.+++.+|+|+++|+++|++|||||+..
T Consensus 30 ~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~ 65 (257)
T 2ivx_A 30 CRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMH 65 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhh
Confidence 477899999999999999999999999999999964
No 33
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=95.88 E-value=0.0058 Score=59.30 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhh
Q psy2129 279 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 314 (498)
Q Consensus 279 ~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~ 314 (498)
.|...+.||.+++.+|+|+++|+++|++|||||+..
T Consensus 40 ~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~ 75 (258)
T 2i53_A 40 YRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMF 75 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 377889999999999999999999999999999963
No 34
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=95.54 E-value=0.0075 Score=61.95 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhh
Q psy2129 279 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 314 (498)
Q Consensus 279 ~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~ 314 (498)
.|..++.||.+++.+|+|+++|+++|++|||||+..
T Consensus 37 ~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~ 72 (358)
T 2pk2_A 37 YRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMI 72 (358)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 377889999999999999999999999999999963
No 35
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=94.72 E-value=0.15 Score=52.03 Aligned_cols=86 Identities=8% Similarity=-0.010 Sum_probs=74.1
Q ss_pred hhhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCCChhhHHHHhCCCHHHHHHH
Q psy2129 380 VHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTEC 459 (498)
Q Consensus 380 p~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~W~~~L~~~tgyt~~~I~~c 459 (498)
.+..|..+...++++..+...|..+...+..... +-+.+...+||||||+|++..+ .+.....+..+++.+..+|..+
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~-~rGrs~e~vaAAclYiACR~~~-~prtl~eI~~~~~v~~keigr~ 206 (345)
T 4bbr_M 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKT-LKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIHVKTKEFGKT 206 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-TTTCCHHHHHHHHHHHHHHHTC-CBCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-ccCCCHHHHHHHHHHHHHHhcC-CCccHHHHHHHhCCCHHHHHHH
Confidence 4557788888999999999999999998887665 7788999999999999999998 6666677888999999999999
Q ss_pred HHHHHHHH
Q psy2129 460 VKCLHEVH 467 (498)
Q Consensus 460 ~~~L~~l~ 467 (498)
++.|.+.+
T Consensus 207 ~k~l~~~L 214 (345)
T 4bbr_M 207 LNIMKNIL 214 (345)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 99998754
No 36
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=94.28 E-value=0.033 Score=56.24 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHhh
Q psy2129 280 TALFVASIIEVAEEYK--MHNETLHLAINYVDRFLS 313 (498)
Q Consensus 280 r~l~va~i~ev~~~l~--L~~~Tl~lAi~~fDRfl~ 313 (498)
+..++.||.++|.+|+ |++.|+++|++|||||+.
T Consensus 57 r~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~ 92 (323)
T 1jkw_A 57 CKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYL 92 (323)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence 6677899999999999 999999999999999996
No 37
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=92.63 E-value=0.077 Score=54.02 Aligned_cols=86 Identities=9% Similarity=0.008 Sum_probs=74.0
Q ss_pred hhhHHHHHHhCCCchhHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHHcCCCCCChhhHHHHhCCCHHHHHHHH
Q psy2129 381 HSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECV 460 (498)
Q Consensus 381 ~~FL~~fl~~~~~~~~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~~l~~~~~W~~~L~~~tgyt~~~I~~c~ 460 (498)
+.+|..+...++++..+...|..+...++.... +-+.+...||+||||+|++..+ .+.-...+...++++..+|..++
T Consensus 130 ~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~-~kgr~~~~vaaAclyiAcR~e~-~prtl~ei~~~~~v~~keIgr~~ 207 (345)
T 3k7a_M 130 FAKITMLCDAAELPKIVKDCAKEAYKLCHDEKT-LKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIHVKTKEFGKTL 207 (345)
T ss_dssp HHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCS-SCCCCSHHHHTTTTTTTSBTTB-SSCCHHHHHHSSSCCSHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-ccCCcHHHHHHHHHHHHHHHcC-CCccHHHHHHHHCCCHHHHHHHH
Confidence 457888889999999999999999988877765 7888999999999999999887 55566677888999999999999
Q ss_pred HHHHHHHH
Q psy2129 461 KCLHEVHR 468 (498)
Q Consensus 461 ~~L~~l~~ 468 (498)
+.|.+.+.
T Consensus 208 ~~l~~~L~ 215 (345)
T 3k7a_M 208 NIMKNILR 215 (345)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99988754
No 38
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=88.73 E-value=5.6 Score=37.53 Aligned_cols=150 Identities=13% Similarity=0.129 Sum_probs=90.5
Q ss_pred chhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhcc---ccchhhhhhhhhhhhhhhcccccCCCChhHHHhhccccc
Q psy2129 279 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMS---VVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTY 355 (498)
Q Consensus 279 ~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~---i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~y 355 (498)
..+.|++.++.+.++-+++.-++..||-+...|.-... ..-++.+-||++|+.||+--.. .|..+.++..+ |...
T Consensus 11 LHP~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~-~PiplaE~r~l-D~sL 88 (260)
T 3h4c_A 11 LHPTMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQ-QPLPLAEVRCL-DSSL 88 (260)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHH-CTTC
T ss_pred ecHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcC-CCccHHHHHHH-hhhh
Confidence 46789999999999999999999999999999976442 3345689999999999986443 47777777544 3233
Q ss_pred CHHHHHHHHHHHHHHcCCCc-----cccchhhhHHHHHHhCCCchhHHHH-HHHHHHHHhhcCccccCCChHHHHHHHHH
Q psy2129 356 TKKQLLKMETLILKVLNFDL-----NIPTVHSFICHITVSGHLDQSVLYL-AQYLSELALVSGDPFLQFLPSLIACSAIA 429 (498)
Q Consensus 356 t~~eI~~mE~~IL~~L~fdL-----~~pTp~~FL~~fl~~~~~~~~i~~l-A~~llelsL~d~~~fl~y~PS~IAaAaL~ 429 (498)
..-++.+ ..|++.|+-.= ...-....|..|+..++..-..+.. +..|++. +...+.+..+---.--.-++.
T Consensus 89 ~Dvelrr--~Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s~Y~p~C~rL~~a-i~~ve~LA~~~~~drii~AlL 165 (260)
T 3h4c_A 89 GDVELRR--ADIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVSLYLPHCKRLLTA-LGRVEALAGLTVADRVTTALL 165 (260)
T ss_dssp CCHHHHH--HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-HHTCGGGTTCCHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchhhhhhHHHHHHHH-HHHHHHHhhhhHHHHHHHHHH
Confidence 3222333 23455554321 1222334566677777766443332 2222222 222222444444333344566
Q ss_pred HHHH
Q psy2129 430 LARY 433 (498)
Q Consensus 430 LA~~ 433 (498)
||+-
T Consensus 166 LArT 169 (260)
T 3h4c_A 166 LART 169 (260)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6664
No 39
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=65.99 E-value=43 Score=33.15 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=66.0
Q ss_pred chhhhHHHHHHhCCCchhHHHHHHHHHHH-HhhcCc-cccCCChHHHHHHHHHHHHHHcCCCCCChhhHHHHhCCCHHHH
Q psy2129 379 TVHSFICHITVSGHLDQSVLYLAQYLSEL-ALVSGD-PFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSL 456 (498)
Q Consensus 379 Tp~~FL~~fl~~~~~~~~i~~lA~~llel-sL~d~~-~fl~y~PS~IAaAaL~LA~~~l~~~~~W~~~L~~~tgyt~~~I 456 (498)
+...|+.++.+..+.+..+..++.++++- ...... ........-|-++|+.+|.+.++....|....+.+.|++..++
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~EL 155 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHEL 155 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHH
Confidence 56789999999988887777766555553 332332 1345678899999999999999866677788889999999998
Q ss_pred HHHHHHHHHH
Q psy2129 457 TECVKCLHEV 466 (498)
Q Consensus 457 ~~c~~~L~~l 466 (498)
...=..++.+
T Consensus 156 N~LE~eFL~l 165 (293)
T 2pmi_B 156 NILENDFLKR 165 (293)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7766666554
No 40
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=63.68 E-value=31 Score=28.49 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=53.6
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhc------cccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHH
Q psy2129 287 IIEVAEEYKMHNETLHLAINYVDRFLSLM------SVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQL 360 (498)
Q Consensus 287 i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~------~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI 360 (498)
+.++|-.||+.. ....|-.++++|-..- .++-.+.+ ..++|+|.|||..-..+.. ..++..++ .++.++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~-f~aaA~~~acr~~K~kVdK-~KL~~~s~--lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPL-FTSAALLSACKILKLKVDK-NKMVATSG--VKKAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHH-HHHHHHHHHHHHTTCCCCH-HHHHHTTC--BCHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccH-HHHHHHHHHHHHHccCCCH-HHHHHHHC--CCHHHH
Confidence 567888889887 6777889999995432 23333444 5578999999998775544 34666655 567787
Q ss_pred HHHHHHHHH
Q psy2129 361 LKMETLILK 369 (498)
Q Consensus 361 ~~mE~~IL~ 369 (498)
-+.+..+-+
T Consensus 81 ~~l~~~~e~ 89 (95)
T 3m03_A 81 DRLCKQLEK 89 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766544
No 41
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=47.37 E-value=35 Score=33.88 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=46.8
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhhh----ccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcc
Q psy2129 286 SIIEVAEEYKMHNETLHLAINYVDRFLSL----MSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITD 352 (498)
Q Consensus 286 ~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~----~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~ 352 (498)
...++|+.++++..|...|...+.+.-.. .....+.... -.+|||+|+.-.+....++..++..++
T Consensus 5 rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~-w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 5 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKEL-WGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHH-HHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHH-HHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 34578999999999999999999997664 1233333333 445599999877777788877777654
No 42
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=36.24 E-value=70 Score=26.31 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=41.6
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCCCChhhHHHHhCCCHHHHHHHHHHHHHHHH
Q psy2129 416 LQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHR 468 (498)
Q Consensus 416 l~y~PS~IAaAaL~LA~~~l~~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~~ 468 (498)
+.+.--.-++||++.|++... ...-...|...+|....++......+.++..
T Consensus 41 ~D~s~P~f~aaA~~~acr~~K-~kVdK~KL~~~s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 41 LDLSRPLFTSAALLSACKILK-LKVDKNKMVATSGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp CCTTSHHHHHHHHHHHHHHTT-CCCCHHHHHHTTCBCHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHHHHHc-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344455667888999999988 5556678999999999999999999887653
No 43
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=25.54 E-value=56 Score=28.91 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=28.0
Q ss_pred hhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHH
Q psy2129 323 QLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQL 360 (498)
Q Consensus 323 qLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI 360 (498)
.|+-++|-++|..+....|-.++++..|.+ -||+++-
T Consensus 112 ~Lldl~c~~vA~~ikgkt~eeir~~f~I~n-d~t~eEe 148 (160)
T 2p1m_A 112 NLLDLTCQTVADMIKGKTPEEIRTTFNIKN-DFTPEEE 148 (160)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHTTCCC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 467788999999998776667788777755 3787654
No 44
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=22.34 E-value=87 Score=27.49 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=27.8
Q ss_pred hhhhhhhhhhhhcccccCCCChhHHHhhcccccCHHHH
Q psy2129 323 QLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQL 360 (498)
Q Consensus 323 qLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~yt~~eI 360 (498)
.|+-++|-++|..+....|-.++++..|.++ ||+++-
T Consensus 113 ~Lld~~c~~va~~i~gkt~eeir~~f~I~~d-~t~eEe 149 (159)
T 2ast_A 113 GLLDVTCKTVANMIKGKTPEEIRKTFNIKND-FTEEEE 149 (159)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHTTCCCC-SCTTHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCCCC-CCHHHH
Confidence 4677889999999988777777888777543 676654
No 45
>1n0x_P B2.1 peptide, immunoglobulin heavy chain; antibody-peptide complex, peptide dimer, immune system; HET: CXS; 1.80A {Homo sapiens}
Probab=20.49 E-value=22 Score=21.71 Aligned_cols=15 Identities=53% Similarity=0.696 Sum_probs=12.0
Q ss_pred cccccccccchhhhh
Q psy2129 3 SFAFHDLENRIDHIE 17 (498)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (498)
|..|.|||||--+++
T Consensus 4 symfsdlenrciaae 18 (26)
T 1n0x_P 4 SYMFSDLENRCIAAE 18 (26)
T ss_dssp CEEEETTTTEEEECS
T ss_pred hhhhhHHHHHHHHHH
Confidence 677999999977664
Done!