RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2129
(498 letters)
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
2x1n_B* 1vyw_B* ...
Length = 260
Score = 302 bits (775), Expect = e-101
Identities = 131/299 (43%), Positives = 179/299 (59%), Gaps = 50/299 (16%)
Query: 198 DYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAI 257
DY +DI+ YL + E + +PK YM+KQ DI + MR++LVDWL+EV EEYK+ NETLHLA+
Sbjct: 5 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 64
Query: 258 NYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSV 317
NY+DRFLS MSV+R KLQL+GT A+ +AS
Sbjct: 65 NYIDRFLSSMSVLRGKLQLVGTAAMLLAS------------------------------- 93
Query: 318 VRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNI 377
K+EEIYPPEV EFVYITDDTYTKKQ+L+ME L+LKVL FDL
Sbjct: 94 -----------------KFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAA 136
Query: 378 PTVHSFIC-HITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLD 436
PTV+ F+ + + V LA +L EL+L+ DP+L++LPS+IA +A LA Y +
Sbjct: 137 PTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVT 196
Query: 437 YKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEA 495
++WP SL TG++L+SL C+ LH+ + K +Q++ KYK + + VS +
Sbjct: 197 -GQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNP 254
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Length = 269
Score = 283 bits (725), Expect = 4e-93
Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 53/298 (17%)
Query: 198 DYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAI 257
+Y DIY YL + E + Y+ + ++ MR++L+DWL++V ++++ ET+++ +
Sbjct: 5 EYVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTV 63
Query: 258 NYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSV 317
+ +DRF+ SV + LQL+G TA+F+AS
Sbjct: 64 SIIDRFMQNNSVPKKMLQLVGVTAMFIAS------------------------------- 92
Query: 318 VRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNI 377
KYEE+YPPE+ +F ++TD+TYTK Q+ +ME IL+ LNF L
Sbjct: 93 -----------------KYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGR 135
Query: 378 PTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDY 437
P F+ + G +D LA+YL EL ++ D + F PS IA A +LA LD
Sbjct: 136 PLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYD-MVHFPPSQIAAGAFSLALKILD- 193
Query: 438 KEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAAS--QKAAYNKYKLNLWKNVSTV 493
W +L ++ +SL ++ L + NKY + +ST+
Sbjct: 194 NGEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKNKYATSKHAKISTL 251
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase,
chromosomal rearrangement, ATP-binding, transferase,
polymorphism, cell division; 2.30A {Homo sapiens} PDB:
2w99_A 2w9f_A 2w9z_A
Length = 271
Score = 280 bits (717), Expect = 6e-92
Identities = 78/326 (23%), Positives = 122/326 (37%), Gaps = 69/326 (21%)
Query: 170 MSVDLSQTEKGTPTRNVEDMVCMLINADDYRDDIYQYLLKCERRIRPKANYM-RKQNDIN 228
M L E T R D A+ D + + +LK E P +Y Q ++
Sbjct: 1 MEHQLLCCEVETIRRAYPD-------ANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVL 53
Query: 229 SEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASII 288
MR ++ W++EV EE K E LA+NY+DRFLSL V +S+LQLLG T +FVAS
Sbjct: 54 PSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVAS-- 111
Query: 289 EVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFV 348
K +E P +
Sbjct: 112 ----------------------------------------------KMKETIPLTAEKLC 125
Query: 349 YITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICH----ITVSGHLDQSVLYLAQYL 404
TD++ ++LL+ME L++ L ++L T H FI H + + Q + AQ
Sbjct: 126 IYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTF 185
Query: 405 SELALVSGDPFLQFLPSLIACSAIALARYCLDYKE--------AWPSSLADITGHSLDSL 456
L F+ PS++A ++ A L+ + L+ + D L
Sbjct: 186 VALCAT-DVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCL 244
Query: 457 TECVKCLHEVHRKGEAASQKAAYNKY 482
C + + + +Q+ K
Sbjct: 245 RACQEQIEALLESSLRQAQQNMDPKA 270
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation,
ATP-BIN cell division, disease mutation, kinase; 3.00A
{Homo sapiens}
Length = 306
Score = 278 bits (714), Expect = 5e-91
Identities = 74/330 (22%), Positives = 120/330 (36%), Gaps = 67/330 (20%)
Query: 172 VDLSQTEKGTPTRNVEDMVCMLINADD---------YRDDIYQYLLKCERRIRPKANYM- 221
+D + +P ++E + C + Q LL+ E R P+A+Y
Sbjct: 1 MDYKDDDDKSPGGSMELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQ 60
Query: 222 RKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTA 281
Q +I MR +L W++EV EE + E LA+NY+DR+LS + +++LQLLG
Sbjct: 61 CVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVC 120
Query: 282 LFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYP 341
+ +AS K E P
Sbjct: 121 MLLAS------------------------------------------------KLRETTP 132
Query: 342 PEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICH----ITVSGHLDQSV 397
+ + TD + +QL E L+L L +DL H F+ +++ V
Sbjct: 133 LTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALV 192
Query: 398 LYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLD----YKEAWPSSLADITGHSL 453
AQ L F + PS+IA +I A L + LA ITG +
Sbjct: 193 KKHAQTFLALCATD-YTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEV 251
Query: 454 DSLTECVKCLHEVHRKGEAASQKAAYNKYK 483
D L C + + R+ + + + +
Sbjct: 252 DCLRACQEQIEAALRESLREAAQTSSSPAP 281
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between
N-terminal and C-TERM domain of kinase, cell
cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus
saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A*
1xo2_A* 1bu2_A
Length = 254
Score = 270 bits (692), Expect = 2e-88
Identities = 40/280 (14%), Positives = 86/280 (30%), Gaps = 57/280 (20%)
Query: 197 DDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLA 256
+ L E + + Q ++ + R++L+ W+ + E +++ L+
Sbjct: 17 TMKDPRVLNNLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLS 76
Query: 257 INYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMS 316
++ +DR+L + LQ +G + + S
Sbjct: 77 VSILDRYLCKKQGTKKTLQKIGAACVLIGS------------------------------ 106
Query: 317 VVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLN 376
K + P V++ Y++ D +T +L+ E IL+ L +D
Sbjct: 107 ------------------KIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTE 148
Query: 377 IPTVHSFICHIT----VSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALAR 432
F+ + + L + A AL+ + P LI +
Sbjct: 149 AVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPN-IALLSPGLICAGGLLTTI 207
Query: 433 YCLDY-KEAWPSSL---ADITGHSLDSLTECVKCLHEVHR 468
+ W L + I S +++ + E
Sbjct: 208 ETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFS 247
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET:
TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 283
Score = 270 bits (691), Expect = 8e-88
Identities = 66/308 (21%), Positives = 134/308 (43%), Gaps = 69/308 (22%)
Query: 198 DYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAI 257
R+++++ +L E+ +++ + + +MR++L+DWL+EV E YK+H ET +LA
Sbjct: 16 ANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQ 75
Query: 258 NYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSV 317
++ DR+++ +V
Sbjct: 76 DFFDRYMATQ-----------------------------------------------ENV 88
Query: 318 VRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNI 377
V++ LQL+G ++LF+A+K EEIYPP++++F Y+TD + ++L ME +I+K L + L+
Sbjct: 89 VKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSP 148
Query: 378 PTVHSFICHITVSGHLDQS-----------VLYLAQYLSELALVSGDPFLQFLPSLIACS 426
T+ S++ +L+ + L +L ++ D L+F ++A S
Sbjct: 149 LTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVD-CLEFPYGILAAS 207
Query: 427 AIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHR--KGEAASQKAAYNKYKL 484
A+ + ++G+ + CVK + + +S+ +
Sbjct: 208 ALYHFS--------SSELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLKHFRGVAD 259
Query: 485 NLWKNVST 492
N+ T
Sbjct: 260 EDAHNIQT 267
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin,
cell cycle, signaling protein; 2.90A {Human herpesvirus
8} SCOP: a.74.1.1 a.74.1.1
Length = 257
Score = 257 bits (658), Expect = 3e-83
Identities = 52/288 (18%), Positives = 90/288 (31%), Gaps = 61/288 (21%)
Query: 193 LINADDYRDDIYQYLLKCERRIRPKANY-MRKQNDINSEMRSVLVDWLIEVAEEYKMHNE 251
L++ D I+ +L+ E R + Q + S MR +L W+ V +EY +
Sbjct: 11 LLDPTLCEDRIFYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPN 70
Query: 252 TLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRF 311
+ LA+N +DR L + V + Q G+ L VAS
Sbjct: 71 VVALALNLLDRLLLIKQVSKEHFQKTGSACLLVAS------------------------- 105
Query: 312 LSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVL 371
K + P + Y D++++++L+ E +L+ L
Sbjct: 106 -----------------------KLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKL 142
Query: 372 NFDLNIPTVHSFICH----ITVSGHLDQSVLYLAQYLSELALVSGDP-FLQFLPSLIACS 426
+ + + L ALV DP S+I+ +
Sbjct: 143 AWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALV--DPLTGSLPASIISAA 200
Query: 427 AIALARYCLD-----YKEAWPSSLADITGHSLDSLTECVKCLHEVHRK 469
AL + LA I G + L V+ +
Sbjct: 201 GCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSD 248
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent
kinase. protein/protein complex, transferase; 2.50A
{Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Length = 252
Score = 248 bits (635), Expect = 6e-80
Identities = 45/290 (15%), Positives = 81/290 (27%), Gaps = 61/290 (21%)
Query: 201 DDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYV 260
+D Q + + ER + + S+ R VL W+ V ++ + N LA+ +
Sbjct: 18 EDCRQMIYRSEREHDARMVGVNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALL 77
Query: 261 DRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRS 320
D + R Q AL +A
Sbjct: 78 DELFLSTRIDRENYQSTAAVALHIAG---------------------------------- 103
Query: 321 KLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTV 380
K P + + Y+ T +LL +E L L++ +
Sbjct: 104 --------------KVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLS 149
Query: 381 HSFICH----ITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARY-CL 435
IC+ + ++ L + AL P LI + + L
Sbjct: 150 TDLICYILHIMHAPREDYLNIYNLCRPKIFCALCD-GRSAMKRPVLITLACMHLTMNQKY 208
Query: 436 DYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLN 485
DY E + + + L +C + N +K+N
Sbjct: 209 DYYENRIDGVCKSLYITKEELHQCCDLVDIAIV-------SFDENYFKIN 251
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P-
TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1
a.74.1.1 PDB: 2w2h_C
Length = 358
Score = 86.8 bits (214), Expect = 8e-19
Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 23/200 (11%)
Query: 287 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEE-------- 338
+ ++ + + T++ AI Y+ RF + S R + ALF+A+K EE
Sbjct: 45 LQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHV 104
Query: 339 -------IYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSG 391
++P E + L+ +E++IL+ L F+L I H+ + T
Sbjct: 105 IKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLV 164
Query: 392 HLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCL--------DYKEAWPS 443
+ + + +++ +L LQ+ P ++AC I LA D K W
Sbjct: 165 RASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEY 224
Query: 444 SLADITGHSLDSLTECVKCL 463
A +T LD LT +
Sbjct: 225 VDATVTLELLDELTHEFLQI 244
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive
transcription elongation factor, P-TEFB; 1.50A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 258
Score = 82.7 bits (204), Expect = 5e-18
Identities = 38/259 (14%), Positives = 86/259 (33%), Gaps = 54/259 (20%)
Query: 226 DINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVA 285
+ R ++ +V +H +TL I Y RF S + + G LF+A
Sbjct: 35 ATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLA 94
Query: 286 SIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVN 345
+E + +++ +N
Sbjct: 95 GKVE-------------------ETPKKCKDIIK-------------------TARSLLN 116
Query: 346 EFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHIT----VSGHLDQSVLYLA 401
+ + K++++ +E ++L+ + FDL + + F+ + Q ++ +A
Sbjct: 117 DVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMA 176
Query: 402 QYLSELALVSGDPFLQFLPSLIACSAIALARYCL-----------DYKEAWPSSLADITG 450
+L + LQ+ P +IA + + LA Y+ W + D+
Sbjct: 177 WTFVNDSLCT-TLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPV 235
Query: 451 HSLDSLTECVKCLHEVHRK 469
L+ + + L+ ++
Sbjct: 236 DVLEDICHQILDLYSQGKQ 254
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat
domains, transcription-cell cycle complex; 3.00A
{Schizosaccharomyces pombe}
Length = 235
Score = 80.5 bits (198), Expect = 2e-17
Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 11/203 (5%)
Query: 287 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRS-KLQLLGTTALFVASKYEEIYPPEVN 345
+ + ++ L AI + R++ + + L+ L T ++++ K EE P +
Sbjct: 35 VQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIR 93
Query: 346 EFVYITDDTY------TKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLY 399
+D + ++ + ++E I+ VL+ L + ++ + G ++Q L
Sbjct: 94 TICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLE 153
Query: 400 LAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTEC 459
A + + S L P +A +A+ ++ C + + P L I + C
Sbjct: 154 FAWSIVNDSYAS-SLCLMAHPHQLAYAALLIS--CCNDENTIPKLLDLIKSTDAFKVILC 210
Query: 460 VKCLHEVHRKGEAASQKAAYNKY 482
V+ + ++ + + ++ +
Sbjct: 211 VQRIISIYYFEDIEAAALEHHHH 233
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 82.0 bits (202), Expect = 2e-17
Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 20/225 (8%)
Query: 283 FVASIIEVAEEYKMH--NETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIY 340
+ ++E +K + A Y RF SV+ +++ T F+A K +E +
Sbjct: 60 YEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE-F 118
Query: 341 PPEVNEFV-----YITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVS----- 390
+FV +Q+L+ E L+++ LNF L + + +
Sbjct: 119 NVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRY 178
Query: 391 --GHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYK-EAWPSSLAD 447
+ + A ++ D +L + PS IA +AI + E++ S
Sbjct: 179 PILENPEILRKTADDFLNRIALT-DAYLLYTPSQIALTAILSSASRAGITMESYLSESLM 237
Query: 448 IT--GHSLDSLTECVKCLHEVHRKGEAASQKAAYN-KYKLNLWKN 489
+ L L + +K + + +K E + K KL+ +
Sbjct: 238 LKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLDRCHS 282
>2ivx_A Cyclin-T2; transcription regulation, cell division,
phosphorylation, NU protein, cell cycle, transcription;
1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A
3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B*
3lq5_B* 3my1_B* 3tn8_B*
Length = 257
Score = 76.3 bits (187), Expect = 7e-16
Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 23/211 (10%)
Query: 282 LFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEE--- 338
I E+ + + T++ AI Y+ RF S + ++ +TALF+A+K EE
Sbjct: 33 QAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQAR 92
Query: 339 ----------IYPPEVNEFVYITDDT--YTKKQLLKMETLILKVLNFDLNIPTVHSFICH 386
+ + D ++L+ +ET++L+ L F++ I H+ +
Sbjct: 93 KLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVK 152
Query: 387 ITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCL--------DYK 438
T + + + +++ +L LQ+ P++IAC I LA D K
Sbjct: 153 CTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGK 212
Query: 439 EAWPSSLADITGHSLDSLTECVKCLHEVHRK 469
W +T LD LT + E
Sbjct: 213 HWWEYVDPTVTLELLDELTHEFLQILEKTPN 243
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.8 bits (175), Expect = 3e-13
Identities = 61/394 (15%), Positives = 121/394 (30%), Gaps = 132/394 (33%)
Query: 5 AFHDLENRIDHIETTRLKTQNNVSKPQRAVLGVINQ------------------NTSKAD 46
AF +L +I + TTR K + ++ + D
Sbjct: 261 AF-NLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 47 LSRKAKTVANQKIGL-------------KVQNSNTNQCSKAIEKPIQQQKP----QQYSS 89
L R+ T +++ + ++ N ++ + IE + +P + +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 90 -SIFPRHVQKPTNAFP---FKIHEDDSTDEVTDKE-----EKHHDDKEYGNEENEVFDEV 140
S+FP PT F + + D V EK +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS---------- 427
Query: 141 AMLPQAFCKAKVWKDEEEPMSLEKSILSPMSVDLSQTEKGTPTRNVEDMVCMLINADDYR 200
+P + + KV K E E +L +SI+ + + + + D Y
Sbjct: 428 --IPSIYLELKV-KLENEY-ALHRSIV----------DHYNIPKTFDSDDLIPPYLDQY- 472
Query: 201 DDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYV 260
Y ++ ++++ IE E + ++
Sbjct: 473 --FYSHI----------GHHLKN----------------IEHPERMTLFRMV------FL 498
Query: 261 D-RFLSLMSVVRSKLQLLGTTALFVASIIEV---AEEYKMH----NETLHLAINYVDRFL 312
D RFL K++ T SI+ + YK + + +N + FL
Sbjct: 499 DFRFL------EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 313 SLMS--VVRSK----LQLLGTTALFVASKYEEIY 340
+ ++ SK L++ AL ++ E I+
Sbjct: 553 PKIEENLICSKYTDLLRI----ALM--AEDEAIF 580
Score = 68.3 bits (166), Expect = 3e-12
Identities = 71/439 (16%), Positives = 146/439 (33%), Gaps = 99/439 (22%)
Query: 123 HHDDKEYGNEENEVFDEVAMLPQAFCKAKVWKDEEEPMSLEKSILSPMSVD--LSQTEKG 180
HH D E G + + D +++ AF KD ++ + KSILS +D + +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD---MPKSILSKEEIDHIIMSKDAV 61
Query: 181 TPTRNVEDMVCMLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLI 240
+ T + + ++++ Q + E +R NY + I +E R + +
Sbjct: 62 SGTLRLFWTLL------SKQEEMVQKFV--EEVLRI--NYKFLMSPIKTEQRQPSMMTRM 111
Query: 241 EVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLL--------------GTTALFVAS 286
+ + +++N+ A V R L +R L L G T +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV---- 166
Query: 287 IIEVAEEYK----MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPP 342
++V YK M + L + + +++ ++ KL S +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKL 225
Query: 343 EVNEF-----------VY-----ITDDTYTKKQL----LKMETLIL----KVLNFDLNIP 378
++ Y + + K L + L+ +V +F
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 379 TVHSFICHITVSGHLDQSVLYLAQYL----SEL--ALVSGDPFLQFLPSLIACSAIALAR 432
T H + H +++ D+ L +YL +L +++ +P S+IA R
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL---SIIA----ESIR 338
Query: 433 YCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKL-------- 484
L + W D ++S + L E A + +++ +
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIES---SLNVL-------EPAEYRKMFDRLSVFPPSAHIP 388
Query: 485 -----NLWKNVSTVEARTF 498
+W +V +
Sbjct: 389 TILLSLIWFDVIKSDVMVV 407
Score = 56.0 bits (134), Expect = 2e-08
Identities = 78/548 (14%), Positives = 150/548 (27%), Gaps = 189/548 (34%)
Query: 8 DLENRIDHIETTRLKTQNNVSKPQRAVLGVINQNTSKADLSRKAKTVANQKIGL------ 61
D + + T L Q + Q+ V V+ N L KT Q +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIE 114
Query: 62 ---KVQNSNT---------NQCSKAIEKPIQQQKPQQY---------------SSSIFPR 94
++ N N Q + + + + +P +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 95 HVQKPTNAFPFKIH-----EDDSTDEVTDKEEK--HHDDKEYGNEENE------------ 135
VQ FKI +S + V + +K + D + + +
Sbjct: 175 KVQC---KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 136 -----------------VFDEV--AMLPQAF---CK---------------AKVWKD--- 155
V V A AF CK A
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 156 --------EEEPMSLEKSILSPMSVDL-SQTEKGTP------TRNVEDMVCMLINADDYR 200
+E SL L DL + P ++ D + N
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 201 DDIYQYLLK-CERRIRP---KANY-----MRKQNDINSEMRSVLVDWLIEVAEE-----Y 246
D +++ + P + + I + + S++ W + +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVVVN 409
Query: 247 KMHNETLHLAINYVDRFLSLMSV-VRSKLQLLGTTALFVASIIE---VAEEYKMHNETL- 301
K+H +L + + +S+ S+ + K++L AL SI++ + + + +
Sbjct: 410 KLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPP 467
Query: 302 ------------HL-AINYVDRFLSLMSV------VRSKLQLLGTTALFVAS-------- 334
HL I + +R V + K++ T S
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 335 -KYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHL 393
Y+ YI D+ ++L+ +L+F I ++ S +
Sbjct: 528 KFYKP----------YICDNDPKYERLVN------AILDFLPKIEE------NLICSKYT 565
Query: 394 DQSVLYLA 401
D +L +A
Sbjct: 566 D--LLRIA 571
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET:
BAX; 2.20A {Homo sapiens}
Length = 285
Score = 68.2 bits (166), Expect = 7e-13
Identities = 40/228 (17%), Positives = 79/228 (34%), Gaps = 18/228 (7%)
Query: 283 FVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPP 342
F I + E K+ + + A Y RF + S+ L+ T +F+ASK EE
Sbjct: 46 FTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVV 105
Query: 343 EVN------------EFVYITDDTY--TKKQLLKMETLILKVLNFDLNIPTVHSFICHIT 388
F Y + +L+ E +L++++ L + + +
Sbjct: 106 SNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYV 165
Query: 389 VSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALA-RYCLDYKEAWPSSLAD 447
+ +L LA + + D L + P +IA + + +A W + L
Sbjct: 166 QDMGQEDMLLPLAWRIVNDTYRT-DLCLLYPPFMIALACLHVACVVQQKDARQWFAEL-S 223
Query: 448 ITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEA 495
+ + + + L+E + + + A K+ K E
Sbjct: 224 VDMEKILEIIRVILKLYEQWKNFDERKEMATILS-KMPKPKPPPNSEG 270
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 4e-09
Identities = 50/349 (14%), Positives = 100/349 (28%), Gaps = 141/349 (40%)
Query: 229 SEMRSVLVDWLIEVAEEYKMHNET---LHLAINYVDRFLSLMSVVRSKLQLLGTTALFVA 285
S+++ L E E + +E L +FL +V+
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVG----KFLG-----------------YVS 69
Query: 286 SIIEVAEEYKMHNETLHLAINYVDR-FL----------SLM-----------SVVRSKLQ 323
S++E + ++ L+L + + +L L+ ++++ +
Sbjct: 70 SLVE-PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 324 LLGTT----------ALFVASK------------------Y-EE------IYPPEVNEFV 348
ALF A Y EE Y V + +
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 349 YITDDTYTK--KQLLKMETLILKVLNFD--LNIPTV---HSFICHITVSGHLDQSVLY-L 400
+ +T ++ + L E + + LN L P+ ++ I +S L + L
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL--IGVIQL 246
Query: 401 AQYLSELALVSG-DP--FLQFLPSLIAC-----SAIALA--------------------- 431
A Y+ A + G P +L +A+A+A
Sbjct: 247 AHYVV-TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 432 -------------------RYCLDYKEAWPSSLADITGHSLDSLTECVK 461
L+ E PS + I+ + + + + V
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Score = 47.4 bits (112), Expect = 1e-05
Identities = 76/566 (13%), Positives = 162/566 (28%), Gaps = 193/566 (34%)
Query: 7 H-DLENRID-----HIETTRLKTQNNVSKPQRA-VLGVINQNTSKADLSRK-----AKTV 54
H LE+ + ++L+ Q N P+ ++ T+ A+L K + V
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 55 ANQKIG-----LKV----------QNSN----TNQCSKAIEKPIQQQKP--QQY--SSSI 91
K+G L + + ++ + + + + + K + Y + +
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 92 FPRHVQKPTNAFPFKIHEDDSTDEVTDKEEKHHDDKEY------GNEENEVFDEVAMLPQ 145
R K +N+ F+ + + + GN + + F+E+ L
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNA-------------QLVAIFGGQGNTD-DYFEELRDL-- 176
Query: 146 AFCKAKVWKDEEEPMSLEKSILSPMSVDLSQTEKGTPTRNVE-----DMVCMLINADDYR 200
++ L ++ + LS+ + T +++ L N +
Sbjct: 177 -------YQTYH---VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 201 DDIYQYLLKCERRIRP----------KANYM--RKQNDIN-SEMRS-----------VLV 236
D YLL P A+Y+ K E+RS ++
Sbjct: 227 DK--DYLLSI-----PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 237 DWLIEVAEEYKMHNETLHLAINYVDRFL------------------------------SL 266
I + ++ ++ AI + F S
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVL--FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 267 MSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLA-INYVDRF------LSLMSVVR 319
M + T V + + + + ++ +N SL +
Sbjct: 338 MLSIS------NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 320 SKLQLLGTTALFVASK--YEEIYPPEVNEFV---------YITDDTYTKKQLLKMETLIL 368
+ L+ + S+ + E N F+ + + + L +
Sbjct: 392 T-LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 369 KVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAI 428
D+ IP V+ T G S+L ++SG ++ C
Sbjct: 451 NAK--DIQIP-VYD-----TFDG-------------SDLRVLSGS----ISERIVDC--- 482
Query: 429 ALARYCLDYKEAWPSSLADITGHSLD 454
+ R + W ++ H LD
Sbjct: 483 -IIRLPVK----WETTTQFKATHILD 503
Score = 40.4 bits (94), Expect = 0.002
Identities = 33/192 (17%), Positives = 57/192 (29%), Gaps = 66/192 (34%)
Query: 309 DRFL------SLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLK 362
D S++ +V + L T F K + I + Y+ +
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNL--TIHFGGEKGKRIR------------ENYSA---MI 1692
Query: 363 METLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSL 422
ET++ L + ++ T ++ +L Q F Q P+L
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRS--EKGLLSATQ------------FTQ--PAL 1736
Query: 423 IACSAIALARYCLDYKEA----WPSSLADITGHSL----------DSLT--ECVKCLHEV 466
A D K ++ A GHSL D ++ V+ +
Sbjct: 1737 TLME-KAAFE---DLKSKGLIPADATFA---GHSLGEYAALASLADVMSIESLVEVVF-- 1787
Query: 467 HRKGEAASQKAA 478
+R G Q A
Sbjct: 1788 YR-GMTM-QVAV 1797
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 31.0 bits (71), Expect = 0.77
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 445 LADITGHSLDSLTECVKCLHEVHRKGEA 472
L+ + L + K E+ G+A
Sbjct: 191 LSALVNRELTQPDDVRKAAQEIVNSGKA 218
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase,
signaling protein,transfera cycle complex; HET: MES AGS;
2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Length = 293
Score = 30.7 bits (68), Expect = 1.1
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 295 KMHNETLHLAINYVDRFLSLMSVVRSK---LQLLGTTALFVASKYEEIYPPEVNEFVYIT 351
+ + L ++ Y+D ++ TA VA+K + +
Sbjct: 89 SLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG 148
Query: 352 DDTYTKKQLLKMETLILKVLNFDLNIP 378
+L +E LK +N+ +
Sbjct: 149 G--VRCHELNILENDFLKRVNYRIIPR 173
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase
(EC 2.7.1.56), struct genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga
maritima} SCOP: c.72.1.1
Length = 331
Score = 30.3 bits (69), Expect = 1.4
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 445 LADITGHSLDSLTECVKCLHEVHRKGEAA 473
A G L + + VK ++ K + +
Sbjct: 209 HASFLGVDLKTFDDYVKLAEKLAEKSQVS 237
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase;
2.3A {Staphylococcus aureus}
Length = 306
Score = 30.2 bits (69), Expect = 1.6
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 445 LADITGHSLDSLTECVKCLHEVHRKG 470
L + +++S + +K + KG
Sbjct: 185 LEVMFNTTVNSDADVIKYGRLLVDKG 210
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI,
protein structure initiative; 2.10A {Bacillus
halodurans} SCOP: c.72.1.1
Length = 306
Score = 29.8 bits (68), Expect = 1.9
Identities = 3/26 (11%), Positives = 13/26 (50%)
Query: 445 LADITGHSLDSLTECVKCLHEVHRKG 470
L+++ + S+ + + + + +G
Sbjct: 185 LSELVSKPIASIEDAIPHVQRLIGEG 210
>1ev7_A Type IIE restriction endonuclease NAEI; APO-NAEI, topoisomerase,
helix- turn-helix, CAP, hydrolase; 2.38A {Lechevalieria
aerocolonigenes} SCOP: c.52.1.9 PDB: 1iaw_A
Length = 317
Score = 29.3 bits (65), Expect = 3.0
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 188 DMVCMLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYK 247
+C++I A D + L+K + AN K+ + E R+ V L + +
Sbjct: 113 GHICLVIWASDQQCAWTAGLVKVIPQFLGTANRDLKRR-LTPEGRA-QVVKLWPDHGKLQ 170
Query: 248 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALF 283
N LH+ + D+ S S ++ LF
Sbjct: 171 -ENLLLHIPGDVRDQIFSAKSSRGNQHGQARVNELF 205
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation,
coiled-coil, RNA binding PR; 3.10A {Sulfolobus
solfataricus}
Length = 255
Score = 27.7 bits (61), Expect = 7.7
Identities = 10/90 (11%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 127 KEYGNEENEVFDEVAMLPQAFCKAKVWKDEEEPMSLEKSILSPMSVDLSQTEKGTPTRNV 186
+G+ D + L +E+ + + + D+S+ + +
Sbjct: 54 SRFGDRGFLTIDSLKELGF---------NEQRINRILDAAKKSIGADISEDDL----SAM 100
Query: 187 EDMVCMLINADDYRDDIYQYLLKCERRIRP 216
+ +++ + R ++ YL + + P
Sbjct: 101 RMIANTILDLYNIRRNLNNYLEGVMKEVAP 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.374
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,161,345
Number of extensions: 416974
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 47
Length of query: 498
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 400
Effective length of database: 3,965,535
Effective search space: 1586214000
Effective search space used: 1586214000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)