RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2129
(498 letters)
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 143 bits (362), Expect = 1e-41
Identities = 48/179 (26%), Positives = 92/179 (51%), Gaps = 47/179 (26%)
Query: 198 DYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAI 257
R+++++ +L E+ +++ + + +MR++L+DWL+EV E YK+H ET +LA
Sbjct: 9 ANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQ 68
Query: 258 NYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSV 317
++ DR+++ +V
Sbjct: 69 DFFDRYMATQ-----------------------------------------------ENV 81
Query: 318 VRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLN 376
V++ LQL+G ++LF+A+K EEIYPP++++F Y+TD + ++L ME +I+K L + L+
Sbjct: 82 VKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS 140
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 128
Score = 138 bits (348), Expect = 7e-40
Identities = 86/174 (49%), Positives = 107/174 (61%), Gaps = 48/174 (27%)
Query: 202 DIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVD 261
DI+ YL + E + +PK YM+KQ DI + MR++LVDW
Sbjct: 1 DIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDW----------------------- 37
Query: 262 RFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSK 321
++EV EEYK+ NETLHLA+NY+DRFLS MSV+R K
Sbjct: 38 -------------------------LVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK 72
Query: 322 LQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDL 375
LQL+GT A+ +ASK+EEIYPPEV EFVYITDDTYTKKQ+L+ME L+LKVL FDL
Sbjct: 73 LQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDL 126
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 132
Score = 135 bits (340), Expect = 1e-38
Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 49/178 (27%)
Query: 199 YRDDIYQYLLKCERRIRPKANYM-RKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAI 257
D I+ +L+ E R + Q + S MR +L W
Sbjct: 2 CEDRIFYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTW------------------- 42
Query: 258 NYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSV 317
+ V +EY + + LA+N +DR L + V
Sbjct: 43 -----------------------------MFSVCQEYNLEPNVVALALNLLDRLLLIKQV 73
Query: 318 VRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDL 375
+ Q G+ L VASK + P + Y D++++++L+ E +L+ L +
Sbjct: 74 SKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRT 131
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri
[TaxId: 10381]}
Length = 127
Score = 133 bits (335), Expect = 6e-38
Identities = 27/173 (15%), Positives = 60/173 (34%), Gaps = 48/173 (27%)
Query: 203 IYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDR 262
+ L E + + Q ++ + R++L+ W
Sbjct: 2 VLNNLKLRELLLPKFTSLWEIQTEVTVDNRTILLTW------------------------ 37
Query: 263 FLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKL 322
+ + E +++ L+++ +DR+L + L
Sbjct: 38 ------------------------MHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTL 73
Query: 323 QLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDL 375
Q +G + + SK + P V++ Y++ D +T +L+ E IL+ L +D
Sbjct: 74 QKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDT 126
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68
[TaxId: 33708]}
Length = 141
Score = 132 bits (333), Expect = 1e-37
Identities = 28/176 (15%), Positives = 50/176 (28%), Gaps = 48/176 (27%)
Query: 201 DDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYV 260
+D Q + + ER + + S+ R VL W+ V ++ + N LA+
Sbjct: 13 EDCRQMIYRSEREHDARMVGVNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAV--- 69
Query: 261 DRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRS 320
+D + R
Sbjct: 70 ---------------------------------------------ALLDELFLSTRIDRE 84
Query: 321 KLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLN 376
Q AL +A K P + + Y+ T +LL +E L L++ +
Sbjct: 85 NYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVAD 140
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId:
9606]}
Length = 144
Score = 98.5 bits (245), Expect = 4e-25
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 287 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEE-------- 338
I +V +H +TL I Y RF S + + G LF+A K EE
Sbjct: 44 IFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDI 103
Query: 339 --IYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNI 377
+N+ + K++++ +E ++L+ + FDL +
Sbjct: 104 IKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQV 144
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 124
Score = 94.9 bits (236), Expect = 5e-24
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 378 PTVHSFICHITVSGH-LDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLD 436
PTV+ F+ + + V LA +L EL+L+ DP+L++LPS+IA +A LA Y +
Sbjct: 1 PTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVT 60
Query: 437 YKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEA 495
+ WP SL TG++L+SL C+ LH+ + K +Q++ KYK + + VS +
Sbjct: 61 GQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNP 118
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 151
Score = 92.4 bits (229), Expect = 9e-23
Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 16/153 (10%)
Query: 238 WLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTT------ALFVASIIEVA 291
W E+ + + + ++ V+ + L + ++E
Sbjct: 1 WTFSSEEQLARLRADANR--KFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFC 58
Query: 292 EEYKMH--NETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFV- 348
+K + A Y RF SV+ +++ T F+A K +E + +FV
Sbjct: 59 SVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE-FNVSSPQFVG 117
Query: 349 ----YITDDTYTKKQLLKMETLILKVLNFDLNI 377
+Q+L+ E L+++ LNF L +
Sbjct: 118 NLRESPLGQEKALEQILEYELLLIQQLNFHLIV 150
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 143
Score = 91.6 bits (227), Expect = 1e-22
Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 33/152 (21%)
Query: 226 DINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVA 285
D R + + E+ + + T++ AI Y+ RF S + ++ +TALF+A
Sbjct: 25 DKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLA 84
Query: 286 SIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVN 345
+ EE E + + ++P E
Sbjct: 85 A---KVEEQARKLEH------------------------------VIKVAHACLHPLEPL 111
Query: 346 EFVYITDDTYTKKQLLKMETLILKVLNFDLNI 377
++L+ +ET++L+ L F++ I
Sbjct: 112 LDTKCDAYLQQTRELVILETIMLQTLGFEITI 143
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 29.8 bits (67), Expect = 0.26
Identities = 12/58 (20%), Positives = 27/58 (46%)
Query: 381 HSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYK 438
H+ + T + + + +++ +L LQ+ P++IAC I LA +++
Sbjct: 4 HTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWE 61
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 29.2 bits (64), Expect = 1.2
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 249 HNETLHLAINYVDRFLSL-MSVVRSKLQLLGTTALFV--ASIIEVAEEYKMHNETLHLAI 305
N+ ++L + S +VV S +++ GT LF+ A II + A
Sbjct: 288 QNQWINLPVGMTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAE 347
Query: 306 NYVDRFLSL 314
+ L+L
Sbjct: 348 QAAAKILAL 356
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein
Prp31 {Human (Homo sapiens) [TaxId: 9606]}
Length = 249
Score = 29.0 bits (65), Expect = 1.2
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 155 DEEEPMSLEKSILSPMSVDLSQTEKGTPTRNVEDMVCMLINADDYRDDIYQYLLKCERRI 214
M + + + LS+ E +E+ M + + + IY+Y+ I
Sbjct: 76 TNATIMVVSVTASTTQGQQLSEEEL----ERLEEACDMALELNASKHRIYEYVESRMSFI 131
Query: 215 RP 216
P
Sbjct: 132 AP 133
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 27.9 bits (62), Expect = 1.4
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 413 DPFLQFLPSLIACSAIALARYCLDYK-EAWPSSLA--DITGHSLDSLTECVKCLHEVHRK 469
D +L + PS IA +AI + E++ S L L + +K + + +K
Sbjct: 41 DAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKK 100
Query: 470 GEAASQKAAYN-KYKLNLWKN 489
E + K KL+ +
Sbjct: 101 YEPPRSEEVAVLKQKLDRCHS 121
>d1ev7a_ c.52.1.9 (A:) Restriction endonuclease NaeI {Nocardia
aerocolonigenes [TaxId: 68170]}
Length = 302
Score = 27.2 bits (60), Expect = 4.7
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 186 VEDMVCMLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEE 245
+C++I A D + L+K + AN K+ + E R+ V L +
Sbjct: 102 SIGHICLVIWASDQQCAWTAGLVKVIPQFLGTANRDLKRR-LTPEGRAQ-VVKLWPDHGK 159
Query: 246 YKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALF 283
+ N LH+ + D+ S S ++ LF
Sbjct: 160 LQ-ENLLLHIPGDVRDQIFSAKSSRGNQHGQARVNELF 196
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.374
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,717,227
Number of extensions: 77313
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 26
Length of query: 498
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,185,626
Effective search space: 484921034
Effective search space used: 484921034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)