BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2130
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|C Chain C, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 373
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKETLLSCLADLFHNIA 280
+ GL N GNTC+ N+VLQ L +P RD R + + L AD+ +
Sbjct: 22 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGAL- 80
Query: 281 THKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHIN-EKCMKVKKLPMILA 339
H ++ P +F +K F Y QQDA EFL L+ ++ E + ++ P ILA
Sbjct: 81 WHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILA 140
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE-LRLFHL-SDDAVNPDRMYN 384
K + V++ P IL LHL RF + V V FPL+ L L SD A +P +Y
Sbjct: 259 KKLTVQRFPRILVLHLNRFSASRGSIKKSSVG--VDFPLQRLSLGDFASDKAGSP--VYQ 314
Query: 385 LVAVVIHCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQKSSETG 444
L A+ H GS + GHY ++ + + S++Q +S G
Sbjct: 315 LYALCNHSGS-VHYGHYTALCRCQTGWHVYNDSRVSPV------------SENQVASSEG 361
Query: 445 YILFYQ 450
Y+LFYQ
Sbjct: 362 YVLFYQ 367
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 54/149 (36%), Gaps = 28/149 (18%)
Query: 74 FDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPXXXXXXXXXXXXFEEP---- 129
F Y QQDA EFL L+ ++ I R A L+ EEP
Sbjct: 105 FSGYSQQDAQEFLKLLMERLHLEI--NRRGRRAPPILANGPVPSPPRRGGALLEEPELSD 162
Query: 130 ------TW----------VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQN---- 169
W + ++F G L S KC C S+ E F DL + I +
Sbjct: 163 DDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAG 222
Query: 170 --TSITQCLRGFSSTETLCSDNKFKCDNC 196
S+ C F+ E L S+N CD C
Sbjct: 223 GKVSLRDCFNLFTKEEELESENAPVCDRC 251
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|C Chain C, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|E Chain E, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|G Chain G, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
Length = 355
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKETLLSCLADLFHNIA 280
+ GL N GNTC+ N+VLQ L +P RD R + + L AD+ +
Sbjct: 3 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGAL- 61
Query: 281 THKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHIN-EKCMKVKKLPMILA 339
H ++ P +F +K F Y QQDA EFL L+ ++ E + ++ P ILA
Sbjct: 62 WHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILA 121
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE-LRLFHL-SDDAVNPDRMYN 384
K + V++ P IL LHL RF + V V FPL+ L L SD A +P +Y
Sbjct: 240 KKLTVQRFPRILVLHLNRFSASRGSIKKSSVG--VDFPLQRLSLGDFASDKAGSP--VYQ 295
Query: 385 LVAVVIHCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQKSSETG 444
L A+ H GS + GHY ++ + + S++Q +S G
Sbjct: 296 LYALCNHSGS-VHYGHYTALCRCQTGWHVYNDSRVSPV------------SENQVASSEG 342
Query: 445 YILFYQ 450
Y+LFYQ
Sbjct: 343 YVLFYQ 348
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 54/149 (36%), Gaps = 28/149 (18%)
Query: 74 FDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPXXXXXXXXXXXXFEEP---- 129
F Y QQDA EFL L+ ++ I R A L+ EEP
Sbjct: 86 FSGYSQQDAQEFLKLLMERLHLEI--NRRGRRAPPILANGPVPSPPRRGGALLEEPELSD 143
Query: 130 ------TW----------VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQN---- 169
W + ++F G L S KC C S+ E F DL + I +
Sbjct: 144 DDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAG 203
Query: 170 --TSITQCLRGFSSTETLCSDNKFKCDNC 196
S+ C F+ E L S+N CD C
Sbjct: 204 GKVSLRDCFNLFTKEEELESENAPVCDRC 232
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKV 286
GL N GNT + NS LQ L P D L+ + + + N++ L ++ A K++
Sbjct: 10 GLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQM 69
Query: 287 GS-----IAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMI 337
S +AP+ F T++ + +F Y QQD+ E L FL++ ++E +VKK P +
Sbjct: 70 WSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 125
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 334 LPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDR---MYNLVAVVI 390
LP IL +HLKRF Y NR+ + V +R ++S+ N +Y+L+AV
Sbjct: 252 LPKILVVHLKRFSY----NRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSN 307
Query: 391 HCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450
H G+ GHY + K+ D S + L S+ Q ++ Y+LFYQ
Sbjct: 308 HYGAM-GVGHYTAYAKNKLNGKWYY------FDDSNVS----LASEDQIVTKAAYVLFYQ 356
Query: 451 SRD 453
RD
Sbjct: 357 RRD 359
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 22/154 (14%)
Query: 71 SDEFDNYMQQDAHEFLNFLINHINEVI--LSERPQSNAKSKLSAP-XXXXXXXXXXXXFE 127
+ +F Y QQD+ E L FL++ ++E + + ++P K P
Sbjct: 90 APQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLR 149
Query: 128 EPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDI-------------------KQ 168
+ + + F G+ S C C VS + F L + + K
Sbjct: 150 NDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKT 209
Query: 169 NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEA 202
++ C+ F++ ETL + + C NC +Q+A
Sbjct: 210 TVALRDCIELFTTMETLGEHDPWYCPNCKKHQQA 243
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|E Chain E, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 370
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKETLLSCLADLFHNIA 280
+ GL N GNTC+ N+VLQ L +P RD R + + L AD+ +
Sbjct: 16 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGAL- 74
Query: 281 THKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHIN-EKCMKVKKLPMILA 339
H ++ P +F +K F Y QQDA EFL L+ ++ E + ++ P ILA
Sbjct: 75 WHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILA 134
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE-LRLFHL-SDDAVNPDRMYN 384
K + V++ P IL LHL RF + V V FPL+ L L SD A +P +Y
Sbjct: 253 KKLTVQRFPRILVLHLNRFSASRGSIKKSSVG--VDFPLQRLSLGDFASDKAGSP--VYQ 308
Query: 385 LVAVVIHCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQKSSETG 444
L A+ H GS + GHY ++ + + S++Q +S G
Sbjct: 309 LYALCNHSGS-VHYGHYTALCRCQTGWHVYNDSRVSPV------------SENQVASSEG 355
Query: 445 YILFYQ 450
Y+LFYQ
Sbjct: 356 YVLFYQ 361
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 54/149 (36%), Gaps = 28/149 (18%)
Query: 74 FDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPXXXXXXXXXXXXFEEP---- 129
F Y QQDA EFL L+ ++ I R A L+ EEP
Sbjct: 99 FSGYSQQDAQEFLKLLMERLHLEI--NRRGRRAPPILANGPVPSPPRRGGALLEEPELSD 156
Query: 130 ------TW----------VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQN---- 169
W + ++F G L S KC C S+ E F DL + I +
Sbjct: 157 DDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAG 216
Query: 170 --TSITQCLRGFSSTETLCSDNKFKCDNC 196
S+ C F+ E L S+N CD C
Sbjct: 217 GKVSLRDCFNLFTKEEELESENAPVCDRC 245
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|4FJC|A Chain A, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FJC|E Chain E, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
Length = 476
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 23/145 (15%)
Query: 77 YMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPXXXXXXXXXXXXFEEPTWVHEIF 136
Y QQDAHEF F+IN I++ + + P + S+ + + VH +F
Sbjct: 238 YSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNK-------------QCECIVHTVF 284
Query: 137 QGILTSETKCLNCETVSSKDED-FFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDN 195
+G L S C C+ S D F DL +DIK + +CL F E L D + C
Sbjct: 285 EGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQL-KDFNYHCGE 343
Query: 196 CASYQEAQGPNISALEKEIGPDRFP 220
C S Q+A K++G + P
Sbjct: 344 CNSTQDAI--------KQLGIHKLP 360
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 227 GLVNFGNTCYSNSVLQAL----YFCKPFRDRVLEYKAKNKKNKETLLSCLAD-----LFH 277
GL+N G+TC+ +S+LQ L YF + ++ K ++ + SC D L+
Sbjct: 143 GLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCK-VRSPDKCFSCALDKIVHELYG 201
Query: 278 NIATHKKKVGSIAPKK------FITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326
+ T + S + + +T K Y QQDAHEF F+IN I++
Sbjct: 202 ALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQ 256
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 24/134 (17%)
Query: 329 MKVKKLPMILALHLKRFKY-MDKMNRHVKVSHRVVFPLELRLFHL---------SDDAVN 378
+ + KLP +L L LKRF++ ++ NR K+ + FP L + + S++
Sbjct: 354 LGIHKLPSVLVLQLKRFEHLLNGSNR--KLDDFIEFPTYLNMKNYCSTKEKDKHSENGKV 411
Query: 379 PDRMYNLVAVVIHCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQ 438
PD +Y L+ +V H G+ N GHYI+ K K + S + S +
Sbjct: 412 PDIIYELIGIVSHKGT-VNEGHYIAFCK-------ISGGQWFKFNDSMVSSI----SQEE 459
Query: 439 KSSETGYILFYQSR 452
E Y+LFY R
Sbjct: 460 VLKEQAYLLFYTIR 473
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
Length = 471
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 23/145 (15%)
Query: 77 YMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPXXXXXXXXXXXXFEEPTWVHEIF 136
Y QQDAHEF F+IN I++ + + P + S+ + + VH +F
Sbjct: 233 YSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNK-------------QCECIVHTVF 279
Query: 137 QGILTSETKCLNCETVSSKDED-FFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDN 195
+G L S C C+ S D F DL +DIK + +CL F E L D + C
Sbjct: 280 EGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQL-KDFNYHCGE 338
Query: 196 CASYQEAQGPNISALEKEIGPDRFP 220
C S Q+A K++G + P
Sbjct: 339 CNSTQDAI--------KQLGIHKLP 355
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 227 GLVNFGNTCYSNSVLQAL----YFCKPFRDRVLEYKAKNKKNKETLLSCLAD-----LFH 277
GL+N G+TC+ +S+LQ L YF + ++ K ++ + SC D L+
Sbjct: 138 GLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCK-VRSPDKCFSCALDKIVHELYG 196
Query: 278 NIATHKKKVGSIAPKK------FITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326
+ T + S + + +T K Y QQDAHEF F+IN I++
Sbjct: 197 ALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQ 251
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 24/134 (17%)
Query: 329 MKVKKLPMILALHLKRFKY-MDKMNRHVKVSHRVVFPLELRLFHL---------SDDAVN 378
+ + KLP +L L LKRF++ ++ NR K+ + FP L + + S++
Sbjct: 349 LGIHKLPSVLVLQLKRFEHLLNGSNR--KLDDFIEFPTYLNMKNYCSTKEKDKHSENGKV 406
Query: 379 PDRMYNLVAVVIHCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQ 438
PD +Y L+ +V H G+ N GHYI+ K K + S + S +
Sbjct: 407 PDIIYELIGIVSHKGT-VNEGHYIAFCK-------ISGGQWFKFNDSMVSSI----SQEE 454
Query: 439 KSSETGYILFYQSR 452
E Y+LFY R
Sbjct: 455 VLKEQAYLLFYTIR 468
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FIP|E Chain E, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FK5|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
Length = 476
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 23/145 (15%)
Query: 77 YMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPXXXXXXXXXXXXFEEPTWVHEIF 136
Y QQDAHEF F+IN I++ + + P + S+ + + VH +F
Sbjct: 238 YSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNK-------------QCECIVHTVF 284
Query: 137 QGILTSETKCLNCETVSSKDED-FFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDN 195
+G L S C C+ S D F DL +DIK + +CL F E L D + C
Sbjct: 285 EGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQL-KDFNYHCGE 343
Query: 196 CASYQEAQGPNISALEKEIGPDRFP 220
C S Q+A K++G + P
Sbjct: 344 CNSTQDAI--------KQLGIHKLP 360
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 227 GLVNFGNTCYSNSVLQAL----YFCKPFRDRVLEYKAKNKKNKETLLSCLAD-----LFH 277
GL+N GNTC+ +S+LQ L YF + ++ K ++ + SC D L+
Sbjct: 143 GLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCK-VRSPDKCFSCALDKIVHELYG 201
Query: 278 NIATHKKKVGSIAPKK------FITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326
+ T + S + + +T K Y QQDAHEF F+IN I++
Sbjct: 202 ALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQ 256
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 24/134 (17%)
Query: 329 MKVKKLPMILALHLKRFKY-MDKMNRHVKVSHRVVFPLELRLFHL---------SDDAVN 378
+ + KLP +L L LKRF++ ++ NR K+ + FP L + + S++
Sbjct: 354 LGIHKLPSVLVLQLKRFEHLLNGSNR--KLDDFIEFPTYLNMKNYCSTKEKDKHSENGKV 411
Query: 379 PDRMYNLVAVVIHCGSGPNRGHYISIVKSHXXXXXXXXXXXXKIDQSTIEDFFGLTSDHQ 438
PD +Y L+ +V H G+ N GHYI+ K K + S + S +
Sbjct: 412 PDIIYELIGIVSHKGT-VNEGHYIAFCK-------ISGGQWFKFNDSMVSSI----SQEE 459
Query: 439 KSSETGYILFYQSR 452
E Y+LFY R
Sbjct: 460 VLKEQAYLLFYTIR 473
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex
Length = 374
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKET-LLSCLADLFHNIAT 281
GL N GNTC+ NS+LQ L + RD R+ + N T L+ A L I T
Sbjct: 37 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT 96
Query: 282 HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
++P +F T++++ F Y QQDA EFL FL++ ++ + +V P
Sbjct: 97 SSPN-DVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRP 149
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 73 EFDNYMQQDAHEFLNFLI----NHINEVILSERPQSNAKSKLSAPXXXXXXXXXXXXFE- 127
F Y QQDA EFL FL+ N +N V L RP+SN ++ P E
Sbjct: 118 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTL--RPKSNPENLDHLPDDEKGRQMWRKYLER 175
Query: 128 EPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQN----TSITQCLRGFSSTE 183
E + + ++F G L S C +C S+ + F+DL + I + ++ C+R F+ +
Sbjct: 176 EDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKED 235
Query: 184 TLCSD 188
L D
Sbjct: 236 VLDGD 240
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSDDAVNPDRMYNL 385
K +++ P IL LHLKRF + R K++ V FPL +L L + + N +YNL
Sbjct: 256 KKFSIQRFPKILVLHLKRFS--ESRIRTSKLTTFVNFPLRDLDLREFASENTN-HAVYNL 312
Query: 386 VAVVIHCGSGPNRGHYISIVKS 407
AV H G+ GHY + +S
Sbjct: 313 YAVSNHSGTTMG-GHYTAYCRS 333
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
pdb|3V6E|A Chain A, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 367
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKET-LLSCLADLFHNIAT 281
GL N GNTC+ NS+LQ L + RD R+ + N T L+ A L I T
Sbjct: 30 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT 89
Query: 282 HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
++P +F T++++ F Y QQDA EFL FL++ ++ + +V P
Sbjct: 90 SSPN-DVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRP 142
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 74 FDNYMQQDAHEFLNFLI----NHINEVILSERPQSNAKSKLSAPXXXXXXXXXXXXFE-E 128
F Y QQDA EFL FL+ N +N V L RP+SN ++ P E E
Sbjct: 112 FVGYNQQDAQEFLRFLLDGLHNEVNRVTL--RPKSNPENLDHLPDDEKGRQMWRKYLERE 169
Query: 129 PTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQN----TSITQCLRGFSSTET 184
+ + ++F G L S C +C S+ + F+DL + I + ++ C+R F+ +
Sbjct: 170 DSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDV 229
Query: 185 LCSDNK 190
L D K
Sbjct: 230 LDGDEK 235
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSDDAVNPDRMYNL 385
K +++ P IL LHLKRF + R K++ V FPL +L L + + N +YNL
Sbjct: 249 KKFSIQRFPKILVLHLKRFS--ESRIRTSKLTTFVNFPLRDLDLREFASENTN-HAVYNL 305
Query: 386 VAVVIHCGSGPNRGHYISIVKS 407
AV H G+ GHY + +S
Sbjct: 306 YAVSNHSGTTMG-GHYTAYCRS 326
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin
Length = 359
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKET-LLSCLADLFHNIAT 281
GL N GNTC+ NS+LQ L + RD R+ + N T L+ A L I T
Sbjct: 11 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT 70
Query: 282 HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
++P +F T++++ F Y QQDA EFL FL++ ++ + +V P
Sbjct: 71 SSPN-DVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRP 123
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 74 FDNYMQQDAHEFLNFLI----NHINEVILSERPQSNAKSKLSAPXXXXXXXXXXXXFE-E 128
F Y QQDA EFL FL+ N +N V L RP+SN ++ P E E
Sbjct: 93 FVGYNQQDAQEFLRFLLDGLHNEVNRVTL--RPKSNPENLDHLPDDEKGRQMWRKYLERE 150
Query: 129 PTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQN----TSITQCLRGFSSTET 184
+ + ++F G L S C +C S+ + F+DL + I + ++ C+R F+ +
Sbjct: 151 DSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDV 210
Query: 185 LCSDNK 190
L D K
Sbjct: 211 LDGDEK 216
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSDDAVNPDRMYNL 385
K +++ P IL LHLKRF + R K++ V FPL +L L + + N +YNL
Sbjct: 230 KKFSIQRFPKILVLHLKRFS--ESRIRTSKLTTFVNFPLRDLDLREFASENTN-HAVYNL 286
Query: 386 VAVVIHCGSGPNRGHYISIVKS 407
AV H G+ GHY + +S
Sbjct: 287 YAVSNHSGTTMG-GHYTAYCRS 307
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With
Ubiquitin
Length = 348
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRD----RVLEYKAKNKKNKET-LLSCLADLFHNIAT 281
GL N GNT + NS+LQ L + RD R+ + N T L+ A L I T
Sbjct: 11 GLRNLGNTXFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT 70
Query: 282 HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
++P +F T++++ F Y QQDA EFL FL++ ++ + +V P
Sbjct: 71 SSPN-DVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRP 123
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 74 FDNYMQQDAHEFLNFLI----NHINEVILSERPQSNAKSKLSAPXXXXXXXXXXXXFE-E 128
F Y QQDA EFL FL+ N +N V L RP+SN ++ P E E
Sbjct: 93 FVGYNQQDAQEFLRFLLDGLHNEVNRVTL--RPKSNPENLDHLPDDEKGRQMWRKYLERE 150
Query: 129 PTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQN----TSITQCLRGFSSTET 184
+ + ++F G L S C +C S+ + F+DL + I + ++ C+R F+ +
Sbjct: 151 DSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDV 210
Query: 185 LCSDNK 190
L D K
Sbjct: 211 LDGDEK 216
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSDDAVNPDRMYNL 385
K +++ P IL LHLKRF + R K++ V FPL +L L + + N +YNL
Sbjct: 230 KKFSIQRFPKILVLHLKRFS--ESRIRTSKLTTFVNFPLRDLDLREFASENTN-HAVYNL 286
Query: 386 VAVVIHCGSGPNRGHYISIVKS 407
AV H G+ GHY + +S
Sbjct: 287 YAVSNHSGTTMG-GHYTAYCRS 307
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 396
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 182 TETLCSDNKFKCDNCASYQEAQGPNISALE-KEIGPDRFPPNERYFGLVNFGNTCYSNSV 240
T T+ +NK C Y +A+ +SA + + + P GL N GNTCY NS+
Sbjct: 23 TPTVNRENKPTC-----YPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSI 77
Query: 241 LQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGS-----IAPKKFI 295
LQ L D ++ N+ LL ++ K + + I+PK F
Sbjct: 78 LQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137
Query: 296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326
+ K D+F Y QQD+ E L FL++ ++E
Sbjct: 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHE 168
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 71 SDEFDNYMQQDAHEFLNFLINHINEVILS----ERPQSNAKSKLSAPXXXXXXXXXXXXF 126
+D+F Y QQD+ E L FL++ ++E + +R + L
Sbjct: 144 NDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQL 203
Query: 127 EEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSIT--QCLRGFSSTET 184
E V +FQG S +CL C S E F L + + + T CLR FS E
Sbjct: 204 NESIIV-ALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK 262
Query: 185 LCSDNKFKCDNCASYQEA 202
L +N+F C +C + +++
Sbjct: 263 LTDNNRFYCSHCRARRDS 280
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPD---RMY 383
K +++ KLP +L +HLKRF Y + + ++ S V FPLE LS + P + Y
Sbjct: 282 KKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTS--VDFPLE--NLDLSQYVIGPKNNLKKY 337
Query: 384 NLVAVVIHCGSGPNRGHYISIVKS 407
NL +V H G G + GHY + K+
Sbjct: 338 NLFSVSNHYG-GLDGGHYTAYCKN 360
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 23/127 (18%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKET-----LLSCLADLFHNI 279
Y G+ N GN+CY NSV+Q L+ F+ + ++ K +N T + +A L H +
Sbjct: 344 YTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGL 403
Query: 280 AT------------------HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLI 321
+ K+ IAP+ F + K EF QQDA EF LI
Sbjct: 404 LSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLI 463
Query: 322 NHINEKC 328
N + C
Sbjct: 464 NMVERNC 470
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 182 TETLCSDNKFKCDNCASYQEAQGPNISALE-KEIGPDRFPPNERYFGLVNFGNTCYSNSV 240
T T+ +NK C Y +A+ +SA + + + P GL N GNTCY NS+
Sbjct: 23 TPTVNRENKPTC-----YPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYXNSI 77
Query: 241 LQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGS-----IAPKKFI 295
LQ L D ++ N+ LL ++ K + + I+PK F
Sbjct: 78 LQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIXKALWTGQYRYISPKDFK 137
Query: 296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKV 331
+ K D+F Y QQD+ E L FL + ++E K
Sbjct: 138 ITIGKINDQFAGYSQQDSQELLLFLXDGLHEDLNKA 173
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 7/138 (5%)
Query: 71 SDEFDNYMQQDAHEFLNFLINHINEVILS----ERPQSNAKSKLSAPXXXXXXXXXXXXF 126
+D+F Y QQD+ E L FL + ++E + +R + L
Sbjct: 144 NDQFAGYSQQDSQELLLFLXDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQL 203
Query: 127 EEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSIT--QCLRGFSSTET 184
E V +FQG S +CL C S E F L + + + T CLR FS E
Sbjct: 204 NESIIV-ALFQGQFKSTVQCLTCHKKSRTFEAFXYLSLPLASTSKCTLQDCLRLFSKEEK 262
Query: 185 LCSDNKFKCDNCASYQEA 202
L +N+F C +C + +++
Sbjct: 263 LTDNNRFYCSHCRARRDS 280
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPD---RMY 383
K +++ KLP +L +HLKRF Y + + ++ S V FPLE LS + P + Y
Sbjct: 282 KKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTS--VDFPLE--NLDLSQYVIGPKNNLKKY 337
Query: 384 NLVAVVIHCGSGPNRGHYISIVKS 407
NL +V H G G + GHY + K+
Sbjct: 338 NLFSVSNHYG-GLDGGHYTAYCKN 360
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK 284
Y GL N G TCY NS+LQ L+F R V + + +++ L +F+ + K
Sbjct: 175 YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDK 234
Query: 285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK 327
VG+ KK E D++MQ D E L++++ K
Sbjct: 235 PVGT---KKLTKSFGWET--LDSFMQHDVQELCRVLLDNVENK 272
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRL--FHLSDDAVNPDRMY 383
EK +K LP +L L L RF Y + ++++K++ R FP +L L F D +P Y
Sbjct: 352 EKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPAN-Y 410
Query: 384 NLVAVVIHCGSGPNRGHYI 402
L AV++H G + GHY+
Sbjct: 411 ILHAVLVHSGDN-HGGHYV 428
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 132 VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKF 191
+ ++F+G + S +C + S + ED++D+Q+ IK +I + + + E L DNK+
Sbjct: 282 IPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKY 341
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|B Chain B, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|E Chain E, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
Length = 353
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK 284
Y GL N G TCY NS+LQ L+F R V + + +++ L +F+ + K
Sbjct: 6 YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDK 65
Query: 285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK 327
VG+ KK E D++MQ D E L++++ K
Sbjct: 66 PVGT---KKLTKSFGWET--LDSFMQHDVQELCRVLLDNVENK 103
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRL--FHLSDDAVNPDRMY 383
EK +K LP +L L L RF Y + ++++K++ R FP +L L F D +P Y
Sbjct: 183 EKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPAN-Y 241
Query: 384 NLVAVVIHCGSGPNRGHYI 402
L AV++H G + GHY+
Sbjct: 242 ILHAVLVHSGDN-HGGHYV 259
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 132 VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKF 191
+ ++F+G + S +C + S + ED++D+Q+ IK +I + + + E L DNK+
Sbjct: 113 IPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKY 172
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp)
pdb|1NB8|B Chain B, Structure Of The Catalytic Domain Of Usp7 (Hausp)
Length = 353
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK 284
Y GL N G TCY NS+LQ L+F R V + + +++ L +F+ + K
Sbjct: 6 YVGLKNQGATCYXNSLLQTLFFTNQLRKAVYXXPTEGDDSSKSVPLALQRVFYELQHSDK 65
Query: 285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK 327
VG+ KK E D++ Q D E L++++ K
Sbjct: 66 PVGT---KKLTKSFGWET--LDSFXQHDVQELCRVLLDNVENK 103
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRL--FHLSDDAVNPDRMY 383
EK +K LP +L L L RF Y + ++++K++ R FP +L L F D +P Y
Sbjct: 183 EKGVKFLTLPPVLHLQLXRFXYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPAN-Y 241
Query: 384 NLVAVVIHCGSGPNRGHYI 402
L AV++H G + GHY+
Sbjct: 242 ILHAVLVHSGDN-HGGHYV 259
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 132 VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKF 191
+ ++F+G S +C + S + ED++D+Q+ IK +I + + + E L DNK+
Sbjct: 113 IPKLFRGKXVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKY 172
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|B Chain B, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|C Chain C, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYO|A Chain A, Structure Of Usp14 Bound To Ubquitin Aldehyde
Length = 404
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKET-----LLSCLADLFHNIAT 281
GL N GNTCY N+ +Q + +D + Y + + E + + L DLF ++
Sbjct: 16 GLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSM-- 73
Query: 282 HKKKVGSIAPKKFITRLR------KEKDEFDNYMQQDAHE 315
K SI P + L EK E Y+QQDA+E
Sbjct: 74 -DKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANE 112
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 49/134 (36%)
Query: 322 NHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHL--------- 372
N + K K+ +LP L + + RF Y +K + + KV V FPL L ++ L
Sbjct: 218 NALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKM 277
Query: 373 ---------------------SDDAVNPDR-------------------MYNLVAVVIHC 392
SD +P + Y+L AV+ H
Sbjct: 278 VSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQ 337
Query: 393 GSGPNRGHYISIVK 406
G + GHY+S VK
Sbjct: 338 GRSSSSGHYVSWVK 351
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase
6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A
Resolution
Length = 415
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 18/110 (16%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYK---------AKNKKNKETLLSCLADLFH 277
G N GNTCY N+ LQALY RD +L Y A++++ + ++ F
Sbjct: 26 GFKNXGNTCYLNATLQALYRVNDLRDXILNYNPSQGVSNSGAQDEEIHKQIVIEXKRCFE 85
Query: 278 NIATHKKKVGSIAPKKFITRLRK------EKDEFDN-YMQQDAHEFLNFL 320
N+ K S+ P + LRK E+D Y QQDA E L
Sbjct: 86 NL--QNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQL 133
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 378 NPDRMYNLVAVVIHCGSGPNRGHYISIVK 406
NP +YNL+ V+ H G+ GHY + ++
Sbjct: 341 NPSCVYNLIGVITHQGANSESGHYQAFIR 369
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 330 KVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLEL 367
K+ +LP L + RF + N+ K+ +VVFP +L
Sbjct: 218 KISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQL 255
>pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
Length = 467
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 166 IKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERY 225
+ N + Q + +S LC EA G ++ + IG D+ N+
Sbjct: 222 LAANAFLAQRISSINSISALC--------------EATGADVEEVATAIGMDQRIGNKFL 267
Query: 226 FGLVNFGNTCYSNSVLQALYFCKPFR-DRVLEYKAK----NKKNKETLLSCLADLFHNIA 280
V FG +C+ VL +Y C+ V Y + N + S + D N
Sbjct: 268 KASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTV 327
Query: 281 THKK 284
T KK
Sbjct: 328 TDKK 331
>pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|B Chain B, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|C Chain C, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|D Chain D, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|E Chain E, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|F Chain F, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|G Chain G, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|H Chain H, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|I Chain I, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|J Chain J, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|K Chain K, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|L Chain L, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2QG4|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
Length = 467
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 166 IKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERY 225
+ N + Q + +S LC EA G ++ + IG D+ N+
Sbjct: 222 LAANAFLAQRISSINSISALC--------------EATGADVEEVATAIGMDQRIGNKFL 267
Query: 226 FGLVNFGNTCYSNSVLQALYFCKPFR-DRVLEYKAK----NKKNKETLLSCLADLFHNIA 280
V FG +C+ VL +Y C+ V Y + N + S + D N
Sbjct: 268 KASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTV 327
Query: 281 THKK 284
T KK
Sbjct: 328 TDKK 331
>pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form
Length = 467
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 166 IKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERY 225
+ N + Q + +S LC EA G ++ + IG D+ N+
Sbjct: 222 LAANAFLAQRISSINSISALC--------------EATGADVEEVATAIGMDQRIGNKFL 267
Query: 226 FGLVNFGNTCYSNSVLQALYFCKPFR-DRVLEYKAK----NKKNKETLLSCLADLFHNIA 280
V FG +C+ VL +Y C+ V Y + N + S + D N
Sbjct: 268 KASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTV 327
Query: 281 THKK 284
T KK
Sbjct: 328 TDKK 331
>pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|L Chain L, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|K Chain K, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|J Chain J, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|I Chain I, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Length = 487
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 166 IKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERY 225
+ N + Q + +S LC EA G ++ + IG D+ N+
Sbjct: 221 LAANAFLAQRISSINSISALC--------------EATGADVEEVATAIGMDQRIGNKFL 266
Query: 226 FGLVNFGNTCYSNSVLQALYFCKPFR-DRVLEYKAK----NKKNKETLLSCLADLFHNIA 280
V FG +C+ VL +Y C+ V Y + N + S + D N
Sbjct: 267 KASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTV 326
Query: 281 THKK 284
T KK
Sbjct: 327 TDKK 330
>pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase
Length = 494
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 166 IKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERY 225
+ N + Q + +S LC EA G ++ + IG D+ N+
Sbjct: 221 LAANAFLAQRISSINSISALC--------------EATGADVEEVATAIGMDQRIGNKFL 266
Query: 226 FGLVNFGNTCYSNSVLQALYFCKPFR-DRVLEYKAK----NKKNKETLLSCLADLFHNIA 280
V FG +C+ VL +Y C+ V Y + N + S + D N
Sbjct: 267 KASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTV 326
Query: 281 THKK 284
T KK
Sbjct: 327 TDKK 330
>pdb|4EDF|A Chain A, Dimeric Hugdh, K94e
pdb|4EDF|B Chain B, Dimeric Hugdh, K94e
pdb|4EDF|C Chain C, Dimeric Hugdh, K94e
pdb|4EDF|D Chain D, Dimeric Hugdh, K94e
Length = 494
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 166 IKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERY 225
+ N + Q + +S LC EA G ++ + IG D+ N+
Sbjct: 221 LAANAFLAQRISSINSISALC--------------EATGADVEEVATAIGMDQRIGNKFL 266
Query: 226 FGLVNFGNTCYSNSVLQALYFCKPFR-DRVLEYKAK----NKKNKETLLSCLADLFHNIA 280
V FG +C+ VL +Y C+ V Y + N + S + D N
Sbjct: 267 KASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTV 326
Query: 281 THKK 284
T KK
Sbjct: 327 TDKK 330
>pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|B Chain B, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|C Chain C, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
Length = 493
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 166 IKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERY 225
+ N + Q + +S LC EA G ++ + IG D+ N+
Sbjct: 220 LAANAFLAQRISSINSISALC--------------EATGADVEEVATAIGMDQRIGNKFL 265
Query: 226 FGLVNFGNTCYSNSVLQALYFCKPFR-DRVLEYKAK----NKKNKETLLSCLADLFHNIA 280
V FG +C+ VL +Y C+ V Y + N + S + D N
Sbjct: 266 KASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTV 325
Query: 281 THKK 284
T KK
Sbjct: 326 TDKK 329
>pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|B Chain B, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|C Chain C, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
Length = 481
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 201 EAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFR-DRVLEY-- 257
EA G IS + +G D ++ V FG +C+ VL +Y C+ +V +Y
Sbjct: 249 EATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQ 308
Query: 258 ---KAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKK 293
N + + +A+LF+ + K + A KK
Sbjct: 309 GVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKK 347
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 14 DRFPPNERYFGLVNGKTCKEKEDRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDE 73
++F +ER F + G C + + TS+ D +LGW+ L+L D
Sbjct: 344 EKFSKDERVF--IAGDACHTHSPKAGQGM----NTSMMDTYNLGWKLGLVL-TGRAKRDI 396
Query: 74 FDNYMQQDAHEFLNFLI--NHINEVILSERPQSNAKSKLSA 112
Y +++ H F LI +H + S RP + ++
Sbjct: 397 LKTY-EEERHAFAQALIDFDHQFSRLFSGRPAKDVADEMGV 436
>pdb|2VHF|A Chain A, Structure Of The Cyld Usp Domain
pdb|2VHF|B Chain B, Structure Of The Cyld Usp Domain
Length = 374
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKV 286
G+ N+CY +S L L+ D VL + K K + E L I +
Sbjct: 11 GIQGHYNSCYLDSTLFCLFAFSSVLDTVL-LRPKEKNDVEYYSETQELLRTEIVNPLRIY 69
Query: 287 GSIAPKKFITRLRK--EKDEFDNYM---QQDAHEFLNFLINHI 324
G + K I +LRK EK E + ++D EFLN L +HI
Sbjct: 70 GYVCATK-IMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHI 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,193,559
Number of Sequences: 62578
Number of extensions: 508559
Number of successful extensions: 1146
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1043
Number of HSP's gapped (non-prelim): 72
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)