Query psy2130
Match_columns 470
No_of_seqs 243 out of 2097
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 16:50:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02663 Peptidase_C19G A subfa 100.0 2.3E-60 4.9E-65 463.4 23.2 289 24-450 1-300 (300)
2 KOG1865|consensus 100.0 1.5E-59 3.3E-64 460.0 18.3 277 18-452 104-410 (545)
3 cd02671 Peptidase_C19O A subfa 100.0 1.4E-56 3E-61 439.2 21.3 271 12-450 14-332 (332)
4 cd02668 Peptidase_C19L A subfa 100.0 1.8E-55 3.8E-60 433.7 22.4 281 24-450 1-324 (324)
5 cd02664 Peptidase_C19H A subfa 100.0 2.9E-55 6.4E-60 432.0 20.8 257 24-450 1-327 (327)
6 cd02667 Peptidase_C19K A subfa 100.0 8.4E-55 1.8E-59 419.7 19.6 244 24-450 1-279 (279)
7 cd02660 Peptidase_C19D A subfa 100.0 1.8E-53 3.9E-58 421.1 20.0 271 23-450 1-328 (328)
8 cd02659 peptidase_C19C A subfa 100.0 5.5E-53 1.2E-57 418.7 22.0 283 21-453 1-333 (334)
9 cd02657 Peptidase_C19A A subfa 100.0 1.6E-52 3.5E-57 410.0 21.1 264 24-450 1-305 (305)
10 cd02661 Peptidase_C19E A subfa 100.0 1.4E-52 3.1E-57 410.4 20.5 273 22-450 1-304 (304)
11 COG5560 UBP12 Ubiquitin C-term 100.0 1.1E-53 2.4E-58 419.1 11.6 293 21-453 264-823 (823)
12 COG5533 UBP5 Ubiquitin C-termi 100.0 7.2E-53 1.6E-57 381.8 14.6 299 16-452 65-414 (415)
13 cd02658 Peptidase_C19B A subfa 100.0 6E-51 1.3E-55 399.9 17.8 248 24-450 1-311 (311)
14 cd02669 Peptidase_C19M A subfa 100.0 6.7E-50 1.4E-54 407.2 18.1 268 19-450 116-440 (440)
15 cd02662 Peptidase_C19F A subfa 100.0 2.6E-48 5.7E-53 365.8 17.9 209 24-450 1-240 (240)
16 KOG1868|consensus 100.0 6.7E-47 1.4E-51 388.1 12.4 302 18-456 297-650 (653)
17 cd02674 Peptidase_C19R A subfa 100.0 4.5E-46 9.7E-51 349.7 15.9 217 24-450 1-230 (230)
18 cd02673 Peptidase_C19Q A subfa 100.0 1.5E-45 3.2E-50 345.3 16.6 236 25-450 2-245 (245)
19 KOG1866|consensus 100.0 5.3E-47 1.2E-51 377.4 6.9 290 20-462 93-444 (944)
20 cd02665 Peptidase_C19I A subfa 100.0 6.2E-45 1.3E-49 334.4 16.9 222 24-450 1-228 (228)
21 KOG0944|consensus 100.0 2.4E-43 5.2E-48 349.3 16.6 264 18-452 303-762 (763)
22 KOG4598|consensus 100.0 3.6E-43 7.7E-48 347.1 7.4 283 19-455 84-444 (1203)
23 COG5077 Ubiquitin carboxyl-ter 100.0 1.1E-42 2.4E-47 347.0 7.9 286 19-460 190-519 (1089)
24 KOG1867|consensus 100.0 3.4E-41 7.3E-46 340.6 13.3 283 20-455 159-487 (492)
25 KOG1873|consensus 100.0 2.2E-41 4.7E-46 338.5 6.4 112 327-452 739-877 (877)
26 cd02257 Peptidase_C19 Peptidas 100.0 3.2E-39 6.9E-44 305.6 18.6 238 24-450 1-255 (255)
27 PF00443 UCH: Ubiquitin carbox 100.0 1.9E-38 4.1E-43 303.8 21.6 215 225-449 1-269 (269)
28 KOG1870|consensus 100.0 2.5E-39 5.5E-44 349.6 11.5 296 16-453 240-842 (842)
29 cd02666 Peptidase_C19J A subfa 100.0 1.9E-38 4E-43 310.5 15.5 150 22-184 1-203 (343)
30 KOG1864|consensus 100.0 2.9E-37 6.3E-42 316.6 17.4 307 4-434 212-563 (587)
31 COG5207 UBP14 Isopeptidase T [ 100.0 2E-36 4.4E-41 290.7 13.3 150 22-203 303-490 (749)
32 cd02672 Peptidase_C19P A subfa 100.0 2.8E-36 6.1E-41 286.4 11.0 175 132-450 68-268 (268)
33 KOG1863|consensus 100.0 1.8E-34 4E-39 319.3 10.4 286 20-460 167-493 (1093)
34 cd02670 Peptidase_C19N A subfa 100.0 2.7E-31 5.9E-36 246.2 14.4 111 332-450 96-241 (241)
35 PF13423 UCH_1: Ubiquitin carb 100.0 6.7E-31 1.5E-35 255.4 16.4 254 23-419 1-295 (295)
36 KOG1871|consensus 100.0 1.9E-29 4.1E-34 237.2 14.2 243 74-453 139-420 (420)
37 KOG1872|consensus 99.9 4.3E-27 9.3E-32 227.2 8.4 220 225-453 105-470 (473)
38 KOG2026|consensus 99.9 1.6E-22 3.6E-27 189.7 9.7 247 188-452 39-441 (442)
39 cd02669 Peptidase_C19M A subfa 99.7 8E-18 1.7E-22 171.9 12.9 108 220-327 114-224 (440)
40 cd02658 Peptidase_C19B A subfa 99.6 3.4E-16 7.4E-21 153.6 9.6 101 227-327 1-117 (311)
41 KOG1275|consensus 99.6 2.6E-15 5.6E-20 154.7 13.2 286 19-449 496-860 (1118)
42 cd02657 Peptidase_C19A A subfa 99.6 1.5E-15 3.2E-20 148.7 10.6 98 227-327 1-107 (305)
43 cd02666 Peptidase_C19J A subfa 99.6 1.7E-15 3.7E-20 148.7 9.7 208 225-450 1-343 (343)
44 cd02660 Peptidase_C19D A subfa 99.6 2.9E-15 6.3E-20 148.2 10.0 101 226-327 1-105 (328)
45 cd02671 Peptidase_C19O A subfa 99.6 2.3E-15 4.9E-20 148.0 9.0 103 218-326 17-121 (332)
46 PF00443 UCH: Ubiquitin carbox 99.6 6.1E-16 1.3E-20 147.8 4.2 115 22-152 1-151 (269)
47 cd02663 Peptidase_C19G A subfa 99.6 3E-15 6.4E-20 146.1 9.0 81 227-326 1-81 (300)
48 cd02668 Peptidase_C19L A subfa 99.6 4.7E-15 1E-19 146.2 9.8 93 227-326 1-104 (324)
49 cd02661 Peptidase_C19E A subfa 99.6 8.5E-15 1.9E-19 143.1 9.4 100 225-326 1-102 (304)
50 cd02664 Peptidase_C19H A subfa 99.5 2.1E-14 4.6E-19 141.6 9.6 95 227-325 1-96 (327)
51 cd02659 peptidase_C19C A subfa 99.5 1.6E-14 3.5E-19 143.3 8.6 101 224-326 1-102 (334)
52 KOG0944|consensus 99.5 2E-14 4.3E-19 144.4 8.9 107 220-326 302-420 (763)
53 COG5560 UBP12 Ubiquitin C-term 99.5 6.2E-14 1.3E-18 139.8 8.6 102 223-326 263-371 (823)
54 KOG1865|consensus 99.5 6.9E-14 1.5E-18 138.9 8.7 108 217-326 100-209 (545)
55 cd02667 Peptidase_C19K A subfa 99.5 5.1E-14 1.1E-18 135.9 6.6 66 227-325 1-66 (279)
56 COG5533 UBP5 Ubiquitin C-termi 99.4 3.1E-13 6.7E-18 124.2 8.9 103 222-326 68-178 (415)
57 KOG1873|consensus 99.3 4.4E-12 9.6E-17 129.0 7.4 104 220-326 200-322 (877)
58 COG5207 UBP14 Isopeptidase T [ 99.2 1.3E-11 2.9E-16 120.4 7.3 104 223-326 301-410 (749)
59 cd02662 Peptidase_C19F A subfa 99.2 7.2E-12 1.6E-16 118.1 5.2 49 227-325 1-49 (240)
60 KOG1864|consensus 99.2 5.4E-11 1.2E-15 123.3 10.4 105 222-326 229-338 (587)
61 COG5077 Ubiquitin carboxyl-ter 99.1 1E-10 2.2E-15 119.3 7.3 100 222-326 190-289 (1089)
62 KOG1863|consensus 99.1 1.3E-10 2.9E-15 130.1 8.8 101 222-326 166-269 (1093)
63 KOG1868|consensus 99.0 9.2E-10 2E-14 114.7 9.2 105 221-326 297-407 (653)
64 KOG2026|consensus 98.9 4E-09 8.6E-14 100.3 7.2 149 7-182 121-315 (442)
65 KOG1866|consensus 98.9 4.1E-09 8.8E-14 107.6 7.3 109 216-326 86-198 (944)
66 KOG1871|consensus 98.7 3E-08 6.5E-13 94.8 6.3 110 220-329 23-163 (420)
67 PF13423 UCH_1: Ubiquitin carb 98.7 7.1E-08 1.5E-12 93.9 8.6 100 226-328 1-100 (295)
68 KOG1867|consensus 98.6 7.4E-08 1.6E-12 98.6 5.8 105 222-327 158-265 (492)
69 cd02674 Peptidase_C19R A subfa 98.5 5.2E-08 1.1E-12 91.2 3.7 20 227-246 1-20 (230)
70 KOG1872|consensus 98.5 3.9E-08 8.5E-13 96.5 2.6 123 20-168 103-266 (473)
71 cd02673 Peptidase_C19Q A subfa 98.4 1.7E-07 3.7E-12 88.2 3.9 48 228-326 2-49 (245)
72 KOG1870|consensus 98.4 4.3E-07 9.4E-12 99.6 7.0 111 216-328 237-354 (842)
73 cd02665 Peptidase_C19I A subfa 98.3 5.8E-07 1.3E-11 83.2 3.8 20 227-246 1-20 (228)
74 cd02257 Peptidase_C19 Peptidas 98.3 6.7E-07 1.4E-11 83.9 3.8 20 227-246 1-20 (255)
75 KOG3556|consensus 98.0 1.5E-06 3.2E-11 85.8 0.9 126 222-349 365-536 (724)
76 cd02672 Peptidase_C19P A subfa 97.6 5.5E-05 1.2E-09 72.2 4.4 53 223-276 13-65 (268)
77 PF15499 Peptidase_C98: Ubiqui 97.5 0.0016 3.5E-08 59.7 12.1 37 379-418 215-252 (275)
78 PF05408 Peptidase_C28: Foot-a 97.4 0.00045 9.7E-09 59.8 7.0 36 386-425 130-165 (193)
79 KOG1887|consensus 96.9 0.00014 3.1E-09 76.4 -1.6 114 327-452 674-790 (806)
80 cd02670 Peptidase_C19N A subfa 96.8 0.0012 2.6E-08 61.7 3.9 20 227-246 1-21 (241)
81 KOG4598|consensus 95.0 0.016 3.5E-07 60.0 2.8 76 222-326 84-159 (1203)
82 KOG1275|consensus 91.9 0.4 8.6E-06 51.8 6.8 74 222-300 496-569 (1118)
83 PF08715 Viral_protease: Papai 91.4 1.2 2.5E-05 43.5 8.9 74 223-326 100-179 (320)
84 PF08715 Viral_protease: Papai 74.2 4.6 0.0001 39.4 4.5 72 20-95 100-179 (320)
85 PF05408 Peptidase_C28: Foot-a 70.8 1.6 3.5E-05 38.3 0.4 31 20-50 31-65 (193)
86 PF02099 Josephin: Josephin; 70.3 6.5 0.00014 34.2 4.1 42 385-431 99-142 (157)
87 PF14353 CpXC: CpXC protein 58.2 5.9 0.00013 33.1 1.5 51 143-203 1-51 (128)
88 PF15499 Peptidase_C98: Ubiqui 43.8 22 0.00048 33.2 3.0 76 128-222 119-205 (275)
89 PF01473 CW_binding_1: Putativ 40.1 29 0.00062 18.2 1.9 14 404-417 3-16 (19)
90 cd00730 rubredoxin Rubredoxin; 39.7 34 0.00074 23.4 2.7 42 144-199 2-43 (50)
91 PF00301 Rubredoxin: Rubredoxi 39.6 29 0.00063 23.4 2.3 42 144-199 2-43 (47)
92 PF11164 DUF2948: Protein of u 32.5 2.1E+02 0.0046 24.2 6.8 78 328-406 27-107 (138)
93 KOG2935|consensus 30.8 7 0.00015 36.0 -2.3 59 386-455 104-164 (315)
94 PF03292 Pox_P4B: Poxvirus P4B 29.9 98 0.0021 32.7 5.3 23 233-255 245-269 (666)
95 KOG3556|consensus 26.0 85 0.0018 32.5 4.0 65 380-451 625-717 (724)
96 PF04604 L_biotic_typeA: Type- 25.4 29 0.00064 23.7 0.5 17 25-41 32-50 (51)
97 PF03412 Peptidase_C39: Peptid 25.2 3.7E+02 0.008 21.7 7.5 45 397-452 83-129 (131)
98 cd02418 Peptidase_C39B A sub-f 24.0 3.5E+02 0.0076 21.9 7.1 45 396-451 87-133 (136)
99 PF03367 zf-ZPR1: ZPR1 zinc-fi 24.0 33 0.00071 30.0 0.6 42 144-203 2-43 (161)
100 COG3357 Predicted transcriptio 22.0 50 0.0011 25.5 1.2 13 140-152 55-67 (97)
101 PF13465 zf-H2C2_2: Zinc-finge 21.5 47 0.001 19.0 0.8 13 187-199 11-23 (26)
102 PF14205 Cys_rich_KTR: Cystein 21.0 71 0.0015 22.2 1.6 11 190-200 28-38 (55)
No 1
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-60 Score=463.44 Aligned_cols=289 Identities=58% Similarity=0.961 Sum_probs=247.3
Q ss_pred cccc-CCchhhhh--hhhccchHH-------HHHhhhcCCc-cchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHH
Q psy2130 24 GLVN-GKTCKEKE--DRIEKSQPF-------WEQTSLQDKI-SLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINH 92 (470)
Q Consensus 24 GL~N-GNtCy~Ns--Q~L~~~~~f-------~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~ 92 (470)
||.| |||||||| |||++ ..+ |..+..+... ....+..|+++|+ ...+.|.+++||||||||.+|||.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~-~~~~~f~~~~QqDA~EFl~~lLd~ 78 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-ENLLTCLKDLFESISEQKKRTGVISPKKFITRLK-RENELFDNYMHQDAHEFLNFLLNE 78 (300)
T ss_pred CccCCCcceehhHHHHHhhh-HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHH-hhcCCCCCCccccHHHHHHHHHHH
Confidence 8999 99999999 99999 444 5555544431 2344559999998 788999999999999999999999
Q ss_pred HHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCCCCCH
Q psy2130 93 INEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSI 172 (470)
Q Consensus 93 L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl 172 (470)
||+++........... ............++|.++|+|++.++++|..|++++.+.|+|++|+|+||+..+|
T Consensus 79 l~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Lsl~i~~~~sl 149 (300)
T cd02663 79 IAEILDAERKAEKANR---------KLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQNTSI 149 (300)
T ss_pred HHHHHHHHhhcccccc---------cccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEeccCCCCcCCH
Confidence 9999986543322110 0011122334567899999999999999999999999999999999999999999
Q ss_pred HHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHH
Q psy2130 173 TQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRD 252 (470)
Q Consensus 173 ~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~ 252 (470)
++||+.|+++|.++++++|.|++|+.+..+.
T Consensus 150 ~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~------------------------------------------------- 180 (300)
T cd02663 150 TSCLRQFSATETLCGRNKFYCDECCSLQEAE------------------------------------------------- 180 (300)
T ss_pred HHHHHHhhcccccCCCCcEECCCCCCceeEE-------------------------------------------------
Confidence 9999999999999999999999999988887
Q ss_pred HHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhc
Q psy2130 253 RVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVK 332 (470)
Q Consensus 253 ~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~ 332 (470)
++..|.
T Consensus 181 --------------------------------------------------------------------------k~~~i~ 186 (300)
T cd02663 181 --------------------------------------------------------------------------KRMKIK 186 (300)
T ss_pred --------------------------------------------------------------------------EEEEec
Confidence 888999
Q ss_pred CCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecCCcEE
Q psy2130 333 KLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWL 412 (470)
Q Consensus 333 ~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~~W~ 412 (470)
++|++|+|||+||.++...++..|+...|.||++|++..+.+........|+|+|||+|.|.+.++|||+||+|.+++|+
T Consensus 187 ~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~~~~W~ 266 (300)
T cd02663 187 KLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWL 266 (300)
T ss_pred cCCceeEEEEEeEEeecccCCceecCceEecCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEECCCcEE
Confidence 99999999999999987665668999999999999998876555566789999999999998789999999999999999
Q ss_pred EEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130 413 LFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450 (470)
Q Consensus 413 ~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~ 450 (470)
+|||+.|+++++++|.+.+|... ...+||||||+
T Consensus 267 ~fdD~~V~~~~~~~v~~~~~~~~----~~~~aYiLfY~ 300 (300)
T cd02663 267 LFDDETVEKIDENAVEEFFGDSP----NQATAYVLFYQ 300 (300)
T ss_pred EEcCCceEEcCHHHHHHhcCCCC----CCCceEEEEeC
Confidence 99999999999999998887542 47899999995
No 2
>KOG1865|consensus
Probab=100.00 E-value=1.5e-59 Score=460.01 Aligned_cols=277 Identities=32% Similarity=0.550 Sum_probs=244.9
Q ss_pred CCCccccccc-CCchhhhh--hhhccchHH-----------------------HHHh---hhcCCccchhhHHHHHHhhc
Q psy2130 18 PNERYFGLVN-GKTCKEKE--DRIEKSQPF-----------------------WEQT---SLQDKISLGWECSLILELDL 68 (470)
Q Consensus 18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f-----------------------~~~~---~~~~~~~~~~~~~~~~~l~~ 68 (470)
+...++||.| |||||+|| |||.++||+ |... ........-.+..++..|.
T Consensus 104 ~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~L~- 182 (545)
T KOG1865|consen 104 PAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNPGHPISPSQILSNLR- 182 (545)
T ss_pred cccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCCCCccChHHHHHhhh-
Confidence 3556799999 99999999 999999999 2221 1112212333448888888
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccc
Q psy2130 69 CSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLN 148 (470)
Q Consensus 69 ~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~ 148 (470)
.+...|..+.|+||||||++++|.|+.......++ .....++.++|.++|+|.++++++|+.
T Consensus 183 ~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~------------------~~~~sq~ttlv~~iFGG~LrS~vkC~~ 244 (545)
T KOG1865|consen 183 NISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQ------------------VDPRSQDTTLVHQIFGGYLRSQIKCLH 244 (545)
T ss_pred hhcccccCCchhhHHHHHHHHHHHHHHhhcCCCcc------------------CCcccccceehhhhhccchhhceeccc
Confidence 88999999999999999999999999987622222 122356788999999999999999999
Q ss_pred cCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCc
Q psy2130 149 CETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGL 228 (470)
Q Consensus 149 C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL 228 (470)
|+++|.++|+.+||+|+|....+|+++|+.|+++|.|+|+|.|+|++|++++.+.
T Consensus 245 C~~vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~------------------------- 299 (545)
T KOG1865|consen 245 CKGVSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPAS------------------------- 299 (545)
T ss_pred CCCcccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCccc-------------------------
Confidence 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCcc
Q psy2130 229 VNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNY 308 (470)
Q Consensus 229 ~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~ 308 (470)
T Consensus 300 -------------------------------------------------------------------------------- 299 (545)
T KOG1865|consen 300 -------------------------------------------------------------------------------- 299 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEE
Q psy2130 309 MQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAV 388 (470)
Q Consensus 309 ~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~av 388 (470)
|+++|.+.|+||+|+|+||.. ++..||.+.|.||+.|||.+|+......+..|.|+||
T Consensus 300 ------------------K~lti~raPnVLTi~LKRF~~----~~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYav 357 (545)
T KOG1865|consen 300 ------------------KQLTIHRAPNVLTLHLKRFSN----GTGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAV 357 (545)
T ss_pred ------------------ceeeeecCCceEEEeeehhcc----CcccccccccCCcccccccccccCCCCCCceEEEEEE
Confidence 999999999999999999997 3448999999999999999999977778899999999
Q ss_pred EEeecCCCCCcEEEEEEec-CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEec
Q psy2130 389 VIHCGSGPNRGHYISIVKS-HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSR 452 (470)
Q Consensus 389 V~H~G~~~~~GHY~a~vr~-~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~ 452 (470)
|+|.|.+.++|||++|||. +|.||.+||+.|..++.+.| .++.||||||.|.
T Consensus 358 lVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~V------------Lsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 358 LVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESV------------LSQQAYILFYARK 410 (545)
T ss_pred EEeccccccCCceEEEEEcCCCceEEccCceeeeccccce------------ecccceEEEEEee
Confidence 9999999999999999996 68999999999999999888 5899999999997
No 3
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-56 Score=439.19 Aligned_cols=271 Identities=30% Similarity=0.546 Sum_probs=229.7
Q ss_pred CCCCCCCCCccccccc-CCchhhhh--hhhccchHHHHHhhh----------------------cCCccchhhHHHHHHh
Q psy2130 12 GPDRFPPNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSL----------------------QDKISLGWECSLILEL 66 (470)
Q Consensus 12 ~~~~~~~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~----------------------~~~~~~~~~~~~~~~l 66 (470)
|.++.+-..+++||.| |||||||| |||+++|+|...+.. ........+..|++++
T Consensus 14 ~~~~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~l 93 (332)
T cd02671 14 SCEKRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKYNDELANQAPRRLLNAL 93 (332)
T ss_pred cccccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccCcHHHHHHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 4456666788999999 99999999 999999999222100 0010112244788888
Q ss_pred hcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceec
Q psy2130 67 DLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKC 146 (470)
Q Consensus 67 ~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C 146 (470)
+ ...+.|.++.||||||||.+|||.|++ +|.++|+|++.++++|
T Consensus 94 ~-~~~~~f~~~~QQDA~EFl~~LLd~L~~-----------------------------------~i~~~F~g~~~~~~~C 137 (332)
T cd02671 94 R-EVNPMYEGYLQHDAQEVLQCILGNIQE-----------------------------------LVEKDFQGQLVLRTRC 137 (332)
T ss_pred H-HhccccCCccccCHHHHHHHHHHHHHH-----------------------------------HHHhhhceEEEEEEEe
Confidence 8 778999999999999999999999984 3568999999999999
Q ss_pred cccCCcccccCCCcccccccCCC-------------------CCHHHHhccCCccccccCCCccccCCccccccccCCCc
Q psy2130 147 LNCETVSSKDEDFFDLQVDIKQN-------------------TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNI 207 (470)
Q Consensus 147 ~~C~~~s~~~~~f~~Lsl~i~~~-------------------~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~ 207 (470)
..|++++.+.|+|++|+|||+.. .+|++||+.|+++|.++|+++|.|+.|+.+..+.
T Consensus 138 ~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~---- 213 (332)
T cd02671 138 LECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAE---- 213 (332)
T ss_pred CCCCCeeceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEE----
Confidence 99999999999999999999964 5899999999999999999999999999998888
Q ss_pred cccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCC
Q psy2130 208 SALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVG 287 (470)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 287 (470)
T Consensus 214 -------------------------------------------------------------------------------- 213 (332)
T cd02671 214 -------------------------------------------------------------------------------- 213 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccc----cccccccceEec
Q psy2130 288 SIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKM----NRHVKVSHRVVF 363 (470)
Q Consensus 288 ~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~----~~~~K~~~~v~f 363 (470)
+...|.++|++|+|||+||.+++.. +...|+...|.|
T Consensus 214 ---------------------------------------k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~f 254 (332)
T cd02671 214 ---------------------------------------RSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLT 254 (332)
T ss_pred ---------------------------------------EEEEEecCCCEEEEEeeeeccccccccccCCceecCccccC
Confidence 8899999999999999999976431 345899999999
Q ss_pred CcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCc
Q psy2130 364 PLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSET 443 (470)
Q Consensus 364 p~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~ 443 (470)
|..|++.++... .....|+|+|||+|.|.+.++|||+||+| |++|||+.|++++++++.+...++ .....+
T Consensus 255 p~~L~~~~~~~~--~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr----W~~fdD~~V~~~~~~~~~~~~~~~---~~~~~~ 325 (332)
T cd02671 255 PLKLSLEEWSTK--PKNDVYRLFAVVMHSGATISSGHYTAYVR----WLLFDDSEVKVTEEKDFLEALSPN---TSSTST 325 (332)
T ss_pred ccccccccccCC--CCCCeEEEEEEEEEcCCCCCCCeEEEEEE----EEEEcCcceEEccHHHHHhhcCCC---CCCCCc
Confidence 999999876543 34689999999999998789999999999 999999999999999887643322 135789
Q ss_pred EEEEEEE
Q psy2130 444 GYILFYQ 450 (470)
Q Consensus 444 aYiLfY~ 450 (470)
||||||+
T Consensus 326 aYiLfY~ 332 (332)
T cd02671 326 PYLLFYK 332 (332)
T ss_pred eEEEEEC
Confidence 9999995
No 4
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-55 Score=433.68 Aligned_cols=281 Identities=24% Similarity=0.431 Sum_probs=231.1
Q ss_pred cccc-CCchhhhh--hhhccchHHHHHhhhcCCc---------------cchhhH---HHHHHhhccc----CC------
Q psy2130 24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKI---------------SLGWEC---SLILELDLCS----SD------ 72 (470)
Q Consensus 24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~---------------~~~~~~---~~~~~l~~~~----~~------ 72 (470)
||.| |||||||| |+|+++|+|...+...... ...... .++..|+... .|
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 8999 99999999 9999999994443221100 001111 2222222000 00
Q ss_pred -CCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCC
Q psy2130 73 -EFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCET 151 (470)
Q Consensus 73 -~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~ 151 (470)
.|..++||||+||+.+|||.||+++..... ....++|.++|+|++..+++|..|++
T Consensus 81 l~~~~~~QqDa~EFl~~lLd~L~~~l~~~~~-----------------------~~~~~~i~~~F~G~~~~~~~C~~C~~ 137 (324)
T cd02668 81 LGLDTGQQQDAQEFSKLFLSLLEAKLSKSKN-----------------------PDLKNIVQDLFRGEYSYVTQCSKCGR 137 (324)
T ss_pred hCCCCccccCHHHHHHHHHHHHHHHHhhccC-----------------------CcccchhhhhcceEEEEEEEeCCCCC
Confidence 267789999999999999999999863210 12346789999999999999999999
Q ss_pred cccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccC
Q psy2130 152 VSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNF 231 (470)
Q Consensus 152 ~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~ 231 (470)
.+.+.++|++|+|+||...+|++||+.|+.+|.+++++.|.|++|+.+..+.
T Consensus 138 ~s~~~e~f~~l~l~i~~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~---------------------------- 189 (324)
T cd02668 138 ESSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDAT---------------------------- 189 (324)
T ss_pred ccccccccEEEEEEecccCCHHHHHHHhhCceecCCCccccCCCCCceeeeE----------------------------
Confidence 9999999999999999999999999999999999999999999999988887
Q ss_pred CCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccc
Q psy2130 232 GNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQ 311 (470)
Q Consensus 232 gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~Qq 311 (470)
T Consensus 190 -------------------------------------------------------------------------------- 189 (324)
T cd02668 190 -------------------------------------------------------------------------------- 189 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEe
Q psy2130 312 DAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIH 391 (470)
Q Consensus 312 Da~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H 391 (470)
++..|.++|++|+|||+||.++...+...|+...|.||..|||.++..........|+|+|||+|
T Consensus 190 ---------------k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H 254 (324)
T cd02668 190 ---------------RRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAESDEGSYVYELSGVLIH 254 (324)
T ss_pred ---------------EEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhcccccCCCcEEEEEEEEEE
Confidence 88899999999999999999987666678999999999999999998766667789999999999
Q ss_pred ecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCC---------CCCCCCCcEEEEEEE
Q psy2130 392 CGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTS---------DHQKSSETGYILFYQ 450 (470)
Q Consensus 392 ~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~---------~~~~~~~~aYiLfY~ 450 (470)
.|.+..+|||+||+|. +++||+|||+.|++++++.|.+..+..+ .....+..||||||+
T Consensus 255 ~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 255 QGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred cCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 9987899999999996 4799999999999999999987555221 123468899999996
No 5
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-55 Score=431.97 Aligned_cols=257 Identities=31% Similarity=0.522 Sum_probs=219.2
Q ss_pred cccc-CCchhhhh--hhhccchHHHHHh-------------------------hhcCCccchhhHH-HHHHhhcccCCCC
Q psy2130 24 GLVN-GKTCKEKE--DRIEKSQPFWEQT-------------------------SLQDKISLGWECS-LILELDLCSSDEF 74 (470)
Q Consensus 24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~-------------------------~~~~~~~~~~~~~-~~~~l~~~~~~~f 74 (470)
||.| |||||||| |+|+++|+|...+ ..... ....+.. ++++++ .+.|
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~~L~~lf~~l~~~~~-~~~~~~~~~l~~~~---~~~f 76 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHLMHTQR-RAEAPPDYFLEASR---PPWF 76 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccCCcchHHHHHHHHHHHHhhcCC-cccCCHHHHHHHhc---cccc
Confidence 8999 99999999 9999999992222 11111 1222223 665544 4679
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCccc
Q psy2130 75 DNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSS 154 (470)
Q Consensus 75 ~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~ 154 (470)
..+.|||||||+.+|||.|+. +|.++|+|++.++++|..|++++.
T Consensus 77 ~~~~QqDa~EFl~~lLd~l~~-----------------------------------~i~~~F~G~~~~~i~C~~C~~~s~ 121 (327)
T cd02664 77 TPGSQQDCSEYLRYLLDRLHT-----------------------------------LIEKMFGGKLSTTIRCLNCNSTSA 121 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHHH-----------------------------------HHHhhCcEEeEeEEEcCCCCCEec
Confidence 999999999999999999992 477999999999999999999999
Q ss_pred ccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCc
Q psy2130 155 KDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNT 234 (470)
Q Consensus 155 ~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gnt 234 (470)
+.++|.+|+|+|| +|++||+.|+.+|.++++++|+|++|+.+..+.
T Consensus 122 ~~e~f~~l~L~i~---sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~------------------------------- 167 (327)
T cd02664 122 RTERFRDLDLSFP---SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAE------------------------------- 167 (327)
T ss_pred ccccceeeecCCC---CHHHHHHHhcCeeEccCCCceeCCccCCcccee-------------------------------
Confidence 9999999999999 899999999999999999999999999988887
Q ss_pred chhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHH
Q psy2130 235 CYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAH 314 (470)
Q Consensus 235 Cy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~ 314 (470)
T Consensus 168 -------------------------------------------------------------------------------- 167 (327)
T cd02664 168 -------------------------------------------------------------------------------- 167 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCC-------------------
Q psy2130 315 EFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDD------------------- 375 (470)
Q Consensus 315 E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~------------------- 375 (470)
+...|.++|++|+|||+||.++...+...|+...|.||+.||+..+...
T Consensus 168 ------------k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (327)
T cd02664 168 ------------KEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGE 235 (327)
T ss_pred ------------EEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCcccccccccccccccccccccccc
Confidence 8899999999999999999998876667899999999999999877521
Q ss_pred CCCCCcceEEEEEEEeecCCCCCcEEEEEEecC----------------------CcEEEEeCcceeeechhhhhhhcCC
Q psy2130 376 AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH----------------------DFWLLFDDDVVDKIDQSTIEDFFGL 433 (470)
Q Consensus 376 ~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~----------------------~~W~~~nD~~V~~v~~~~v~~~~g~ 433 (470)
.......|+|+|||+|.|.++++|||+||+|.. +.|++|||+.|+++++++|..+.++
T Consensus 236 ~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~ 315 (327)
T cd02664 236 LVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSR 315 (327)
T ss_pred ccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCC
Confidence 113457899999999999878999999999963 6899999999999999999775543
Q ss_pred CCCCCCCCCcEEEEEEE
Q psy2130 434 TSDHQKSSETGYILFYQ 450 (470)
Q Consensus 434 ~~~~~~~~~~aYiLfY~ 450 (470)
. ...+||||||+
T Consensus 316 ~-----~~~~aYlLfY~ 327 (327)
T cd02664 316 F-----PKDTPYILFYE 327 (327)
T ss_pred C-----CCCCEEEEEeC
Confidence 2 46899999995
No 6
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.4e-55 Score=419.68 Aligned_cols=244 Identities=34% Similarity=0.589 Sum_probs=218.4
Q ss_pred cccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhc
Q psy2130 24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSE 100 (470)
Q Consensus 24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~ 100 (470)
||.| |||||||| |+|+++|+|...+.. .+..|+..++ ...+.|.+++|||||||+.+|||.|+.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------~P~~~~~~l~-~~~~~f~~~~QqDA~Efl~~lld~l~~----- 67 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------TPKELFSQVC-RKAPQFKGYQQQDSHELLRYLLDGLRT----- 67 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------CHHHHHHHHH-HhhHhhcCCchhhHHHHHHHHHHHHHH-----
Confidence 8999 99999999 999999998554443 4568889998 888999999999999999999999982
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCC----CCCHHHHh
Q psy2130 101 RPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ----NTSITQCL 176 (470)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~----~~sl~~~L 176 (470)
+|.++|+|++.++++|..|++++.+.|+|.+|+||++. ..+|++||
T Consensus 68 ------------------------------~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L 117 (279)
T cd02667 68 ------------------------------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCL 117 (279)
T ss_pred ------------------------------hhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCCCCCHHHHH
Confidence 36789999999999999999999999999999999874 57999999
Q ss_pred ccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhc
Q psy2130 177 RGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLE 256 (470)
Q Consensus 177 ~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~ 256 (470)
+.|+.+|.+++++.|.|+.|++ +.
T Consensus 118 ~~~~~~E~l~~~~~~~C~~C~~---a~----------------------------------------------------- 141 (279)
T cd02667 118 KQFTEVEILEGNNKFACENCTK---AK----------------------------------------------------- 141 (279)
T ss_pred HhhcCeeEecCCCcccCCccCc---ee-----------------------------------------------------
Confidence 9999999999999999999987 55
Q ss_pred cccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCc
Q psy2130 257 YKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPM 336 (470)
Q Consensus 257 ~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~ 336 (470)
++..+.++|+
T Consensus 142 ----------------------------------------------------------------------k~~~i~~~P~ 151 (279)
T cd02667 142 ----------------------------------------------------------------------KQYLISKLPP 151 (279)
T ss_pred ----------------------------------------------------------------------eEeEhhhCCC
Confidence 7788999999
Q ss_pred eEEEEeeeeeeeccccccccccceEecCcccccccCCCC-----CCCCCcceEEEEEEEeecCCCCCcEEEEEEec----
Q psy2130 337 ILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDD-----AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS---- 407 (470)
Q Consensus 337 ~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~-----~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~---- 407 (470)
+|+|||+||.++... ...|+...|.||..||+.+++.. .......|+|+|||+|.|.. ++|||+||+|.
T Consensus 152 ~Lii~LkRF~~~~~~-~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~-~~GHY~a~v~~~~~~ 229 (279)
T cd02667 152 VLVIHLKRFQQPRSA-NLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTM-RSGHYVAYVKVRPPQ 229 (279)
T ss_pred eEEEEEeccccCccc-CceecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCCC-CCCEeEEEEEcCccc
Confidence 999999999998653 45899999999999999988765 23456899999999999995 99999999996
Q ss_pred -------------------CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130 408 -------------------HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450 (470)
Q Consensus 408 -------------------~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~ 450 (470)
++.||+|||+.|++|+.++| ...+||||||+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v------------~~~~aYiLfYe 279 (279)
T cd02667 230 QRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEV------------LKSEAYLLFYE 279 (279)
T ss_pred cccccccccccccccCCCCCCcEEEEECCccEECCHHHh------------ccCCcEEEEeC
Confidence 57999999999999999888 36789999996
No 7
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-53 Score=421.13 Aligned_cols=271 Identities=31% Similarity=0.552 Sum_probs=227.7
Q ss_pred ccccc-CCchhhhh--hhhccchHHHHHhhhc-----------------------------CCccchhhHHHHHHhhccc
Q psy2130 23 FGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ-----------------------------DKISLGWECSLILELDLCS 70 (470)
Q Consensus 23 ~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~-----------------------------~~~~~~~~~~~~~~l~~~~ 70 (470)
.||.| |||||||| |||+++|+|...+... .......+..++.+++ ..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~-~~ 79 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSW-KH 79 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH-hh
Confidence 49999 99999999 9999999993322111 0101222337777777 77
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccC
Q psy2130 71 SDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCE 150 (470)
Q Consensus 71 ~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~ 150 (470)
.+.|.++.|||||||+.+|||.||+|+........ ......++|.++|+|++.++++|..|+
T Consensus 80 ~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~------------------~~~~~~~~i~~~F~g~~~~~~~C~~C~ 141 (328)
T cd02660 80 SRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEAN------------------DESHCNCIIHQTFSGSLQSSVTCQRCG 141 (328)
T ss_pred chhhcccccccHHHHHHHHHHHHHHHhhccccccc------------------ccccCCceeEEecccEEEeeeEcCCCC
Confidence 78899999999999999999999999865432210 012335788999999999999999999
Q ss_pred CcccccCCCcccccccCCC---------------CCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccC
Q psy2130 151 TVSSKDEDFFDLQVDIKQN---------------TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIG 215 (470)
Q Consensus 151 ~~s~~~~~f~~Lsl~i~~~---------------~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~ 215 (470)
+++.+.++|++|+|++|.. .+|++||+.|+.+|.+++.+ |+|++|+.+..+.
T Consensus 142 ~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~------------ 208 (328)
T cd02660 142 GVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEAT------------ 208 (328)
T ss_pred CccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceE------------
Confidence 9999999999999999975 89999999999999997766 9999999988777
Q ss_pred CCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHH
Q psy2130 216 PDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFI 295 (470)
Q Consensus 216 ~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~ 295 (470)
T Consensus 209 -------------------------------------------------------------------------------- 208 (328)
T cd02660 209 -------------------------------------------------------------------------------- 208 (328)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCC
Q psy2130 296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDD 375 (470)
Q Consensus 296 ~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~ 375 (470)
++..|.++|++|+|+|+||.++.. +...|+...|.||.+|||.+++..
T Consensus 209 -------------------------------~~~~i~~lP~~Lii~lkRf~~~~~-~~~~K~~~~v~fp~~Ldl~~~~~~ 256 (328)
T cd02660 209 -------------------------------KQLSIKKLPPVLCFQLKRFEHSLN-KTSRKIDTYVQFPLELNMTPYTSS 256 (328)
T ss_pred -------------------------------EEEEecCCCceeEEEEEeEEecCC-CCCcCCCcEEeCCCEechhhhccc
Confidence 888999999999999999999764 345799999999999999987653
Q ss_pred ---------CCCCCcceEEEEEEEeecCCCCCcEEEEEEecC-CcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEE
Q psy2130 376 ---------AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH-DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445 (470)
Q Consensus 376 ---------~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~-~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aY 445 (470)
.......|+|+|||+|.|. ..+|||++|+|.. ++|++|||+.|+++++++| ....||
T Consensus 257 ~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v------------~~~~ay 323 (328)
T cd02660 257 SIGDTQDSNSLDPDYTYDLFAVVVHKGT-LDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEV------------LKSQAY 323 (328)
T ss_pred ccccccccccCCCCceEEEEEEEEeecc-CCCCcEEEEEECCCCcEEEEECCeeEECCHHHh------------cCCCcE
Confidence 3345688999999999997 7899999999987 8999999999999999888 367999
Q ss_pred EEEEE
Q psy2130 446 ILFYQ 450 (470)
Q Consensus 446 iLfY~ 450 (470)
||||.
T Consensus 324 il~Y~ 328 (328)
T cd02660 324 LLFYH 328 (328)
T ss_pred EEEeC
Confidence 99994
No 8
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.5e-53 Score=418.67 Aligned_cols=283 Identities=30% Similarity=0.555 Sum_probs=231.7
Q ss_pred ccccccc-CCchhhhh--hhhccchHHHHHhhhc----CCc-cchhhH---HHHHHhhc----------------ccCCC
Q psy2130 21 RYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ----DKI-SLGWEC---SLILELDL----------------CSSDE 73 (470)
Q Consensus 21 ~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~----~~~-~~~~~~---~~~~~l~~----------------~~~~~ 73 (470)
|++||.| |||||||| |+|+++|+|...+... ... ...... .++..+.. .....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGWDS 80 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCccccCcchhheeccCCCCC
Confidence 5899999 99999999 9999999994443221 000 001111 11121110 11245
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcc
Q psy2130 74 FDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVS 153 (470)
Q Consensus 74 f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s 153 (470)
|..+.||||+||+.+||+.|++++... ...++|.++|+|++..+++|..|++.+
T Consensus 81 ~~~~~QqDa~Efl~~ll~~l~~~~~~~--------------------------~~~~~i~~lF~g~~~~~~~C~~C~~~s 134 (334)
T cd02659 81 LNTFEQHDVQEFFRVLFDKLEEKLKGT--------------------------GQEGLIKNLFGGKLVNYIICKECPHES 134 (334)
T ss_pred CCcccchhHHHHHHHHHHHHHHHhccC--------------------------cccchhhhhCceEEEeEEEecCCCcee
Confidence 778899999999999999999987421 124578999999999999999999999
Q ss_pred cccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCC
Q psy2130 154 SKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGN 233 (470)
Q Consensus 154 ~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gn 233 (470)
.+.++|.+|+|++|...++++||..|+.+|.+++++.|.|++|+++..+.
T Consensus 135 ~~~e~f~~l~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~------------------------------ 184 (334)
T cd02659 135 EREEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAE------------------------------ 184 (334)
T ss_pred cccccceEEEEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEE------------------------------
Confidence 99999999999999999999999999999999998999999999987777
Q ss_pred cchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccH
Q psy2130 234 TCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDA 313 (470)
Q Consensus 234 tCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa 313 (470)
T Consensus 185 -------------------------------------------------------------------------------- 184 (334)
T cd02659 185 -------------------------------------------------------------------------------- 184 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-----------CCCCcc
Q psy2130 314 HEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA-----------VNPDRM 382 (470)
Q Consensus 314 ~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~-----------~~~~~~ 382 (470)
+...|.++|++|+|+|+||.++...+...|+...|.||+.||+.++.... ......
T Consensus 185 -------------k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~ 251 (334)
T cd02659 185 -------------KGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYI 251 (334)
T ss_pred -------------EEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccccccccccccccccccCCCCee
Confidence 78889999999999999999986666668999999999999998877543 234678
Q ss_pred eEEEEEEEeecCCCCCcEEEEEEecC--CcEEEEeCcceeeechhhhh-hhcCCCCCC---------CCCCCcEEEEEEE
Q psy2130 383 YNLVAVVIHCGSGPNRGHYISIVKSH--DFWLLFDDDVVDKIDQSTIE-DFFGLTSDH---------QKSSETGYILFYQ 450 (470)
Q Consensus 383 Y~L~avV~H~G~~~~~GHY~a~vr~~--~~W~~~nD~~V~~v~~~~v~-~~~g~~~~~---------~~~~~~aYiLfY~ 450 (470)
|+|+|||+|.|. ..+|||++|+|.. +.|++|||+.|+++++++|. +.+|+.+.. ...+..||||||+
T Consensus 252 Y~L~~vI~H~G~-~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~ 330 (334)
T cd02659 252 YELHGVLVHSGD-AHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYE 330 (334)
T ss_pred EEEEEEEEecCC-CCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEE
Confidence 999999999997 8999999999974 89999999999999999994 677775332 1346789999999
Q ss_pred ecC
Q psy2130 451 SRD 453 (470)
Q Consensus 451 r~~ 453 (470)
|++
T Consensus 331 ~~~ 333 (334)
T cd02659 331 RKS 333 (334)
T ss_pred EeC
Confidence 976
No 9
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-52 Score=410.01 Aligned_cols=264 Identities=24% Similarity=0.404 Sum_probs=221.5
Q ss_pred cccc-CCchhhhh--hhhccchHHHHHhhhc--------------------------CCccchhhHHHHHHhhcccCCCC
Q psy2130 24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ--------------------------DKISLGWECSLILELDLCSSDEF 74 (470)
Q Consensus 24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~--------------------------~~~~~~~~~~~~~~l~~~~~~~f 74 (470)
||.| |||||||| |+|+++|+|...+... .......+..|+..++ ...+.|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~-~~~~~f 79 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLR-MAFPQF 79 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHH-HHCcCc
Confidence 8999 99999999 9999999993222111 0101223336777777 666777
Q ss_pred ------CCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccc
Q psy2130 75 ------DNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLN 148 (470)
Q Consensus 75 ------~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~ 148 (470)
.+++|||||||+..|||.|++++... ....++|.++|+|++.++++|..
T Consensus 80 ~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~-------------------------~~~~~~i~~~F~g~~~~~~~C~~ 134 (305)
T cd02657 80 AEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA-------------------------GSKGSFIDQLFGIELETKMKCTE 134 (305)
T ss_pred ccccCCCCccccCHHHHHHHHHHHHHHHhccc-------------------------CCCCcHHHHhhceEEEEEEEcCC
Confidence 45599999999999999999987530 23466899999999999999999
Q ss_pred cC-CcccccCCCcccccccCCC---CCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCC
Q psy2130 149 CE-TVSSKDEDFFDLQVDIKQN---TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNER 224 (470)
Q Consensus 149 C~-~~s~~~~~f~~Lsl~i~~~---~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (470)
|+ .++.+.++|.+|+|+||.. .+|++||..++.++.. ..|+.|+......
T Consensus 135 C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~--------------------- 188 (305)
T cd02657 135 SPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYT--------------------- 188 (305)
T ss_pred CCCCCccccccceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEE---------------------
Confidence 99 7999999999999999975 6899999998876653 4688888876665
Q ss_pred ccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCc
Q psy2130 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDE 304 (470)
Q Consensus 225 ~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~ 304 (470)
T Consensus 189 -------------------------------------------------------------------------------- 188 (305)
T cd02657 189 -------------------------------------------------------------------------------- 188 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceE
Q psy2130 305 FDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYN 384 (470)
Q Consensus 305 ~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~ 384 (470)
+...|.++|++|+|||+||.++...+...|+...|.||.+||+.+++. .+..|+
T Consensus 189 ----------------------k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~----~~~~Y~ 242 (305)
T cd02657 189 ----------------------KTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT----PSGYYE 242 (305)
T ss_pred ----------------------EEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccC----CCCcEE
Confidence 788999999999999999999876666789999999999999998875 457999
Q ss_pred EEEEEEeecCCCCCcEEEEEEecC--CcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130 385 LVAVVIHCGSGPNRGHYISIVKSH--DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450 (470)
Q Consensus 385 L~avV~H~G~~~~~GHY~a~vr~~--~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~ 450 (470)
|+|||+|.|.+..+|||+||+|.. +.|+.|||+.|+++++++|.+.+|+. ....||||||+
T Consensus 243 L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~-----~~~~aYiL~Y~ 305 (305)
T cd02657 243 LVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGG-----DWHIAYILLYK 305 (305)
T ss_pred EEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCC-----CCceEEEEEEC
Confidence 999999999878999999999986 89999999999999999998877764 35799999996
No 10
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-52 Score=410.39 Aligned_cols=273 Identities=33% Similarity=0.540 Sum_probs=231.4
Q ss_pred cccccc-CCchhhhh--hhhccchHHHHHhh---------------------------hcCCccchhhHHHHHHhhcccC
Q psy2130 22 YFGLVN-GKTCKEKE--DRIEKSQPFWEQTS---------------------------LQDKISLGWECSLILELDLCSS 71 (470)
Q Consensus 22 ~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~---------------------------~~~~~~~~~~~~~~~~l~~~~~ 71 (470)
|+||.| |||||||| |+|+++|+|...+. ..+. ....+..|.+++. ...
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~p~~~~~~l~-~~~ 78 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSG-PGSAPRIFSSNLK-QIS 78 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCC-CccChHHHHHHHH-HHH
Confidence 689999 99999999 99999999932221 1111 2222336666776 667
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCC
Q psy2130 72 DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCET 151 (470)
Q Consensus 72 ~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~ 151 (470)
+.|..+.||||+||+.+|||.|++++......... ........++|.++|+|++.++++|..|+.
T Consensus 79 ~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~---------------~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 143 (304)
T cd02661 79 KHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA---------------VDPSSQETTLVQQIFGGYLRSQVKCLNCKH 143 (304)
T ss_pred HhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc---------------cCccccCCChhhhcCCcEEeeeEEeCCCCC
Confidence 88999999999999999999999987643322110 011234567899999999999999999999
Q ss_pred cccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccC
Q psy2130 152 VSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNF 231 (470)
Q Consensus 152 ~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~ 231 (470)
.+.+.++|..|+|++|...+++++|+.|+.+|.+++++.|.|+.|+++..+.
T Consensus 144 ~s~~~e~~~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~---------------------------- 195 (304)
T cd02661 144 VSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKAS---------------------------- 195 (304)
T ss_pred CcCccccceeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceE----------------------------
Confidence 9999999999999999999999999999999999998999999999988777
Q ss_pred CCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccc
Q psy2130 232 GNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQ 311 (470)
Q Consensus 232 gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~Qq 311 (470)
T Consensus 196 -------------------------------------------------------------------------------- 195 (304)
T cd02661 196 -------------------------------------------------------------------------------- 195 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEe
Q psy2130 312 DAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIH 391 (470)
Q Consensus 312 Da~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H 391 (470)
++..|.++|++|+|+|+||.++ ...|+...|.||+.||+.++..........|+|+|||+|
T Consensus 196 ---------------~~~~i~~~P~iL~i~l~Rf~~~----~~~Ki~~~v~f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H 256 (304)
T cd02661 196 ---------------KQLTIHRAPNVLTIHLKRFSNF----RGGKINKQISFPETLDLSPYMSQPNDGPLKYKLYAVLVH 256 (304)
T ss_pred ---------------EEEEEecCCcEEEEEEeccccC----CccccCCeEecCCeechhhccccCCCCCceeeEEEEEEE
Confidence 7788999999999999999987 237999999999999999888776667889999999999
Q ss_pred ecCCCCCcEEEEEEec-CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130 392 CGSGPNRGHYISIVKS-HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450 (470)
Q Consensus 392 ~G~~~~~GHY~a~vr~-~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~ 450 (470)
.|.+..+|||++|+|. +++|++|||+.|+++++++| ...+||||||.
T Consensus 257 ~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v------------~~~~aYil~Y~ 304 (304)
T cd02661 257 SGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETV------------LSQKAYILFYI 304 (304)
T ss_pred CCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHh------------cCCCcEEEEeC
Confidence 9996799999999996 78999999999999999888 36799999993
No 11
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-53 Score=419.09 Aligned_cols=293 Identities=27% Similarity=0.482 Sum_probs=246.5
Q ss_pred ccccccc-CCchhhhh--hhhccchHH--------------------------------HHHhhhcCCccchhhHHHHHH
Q psy2130 21 RYFGLVN-GKTCKEKE--DRIEKSQPF--------------------------------WEQTSLQDKISLGWECSLILE 65 (470)
Q Consensus 21 ~~~GL~N-GNtCy~Ns--Q~L~~~~~f--------------------------------~~~~~~~~~~~~~~~~~~~~~ 65 (470)
|.|||.| |||||||| |||.|++.+ ..++..+.. ....+..|...
T Consensus 264 GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~-haf~Ps~fK~t 342 (823)
T COG5560 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNL-HAFTPSGFKKT 342 (823)
T ss_pred cccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccc-cccChHHHHHH
Confidence 6899999 99999999 999999998 122222222 22333366666
Q ss_pred hhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcc-cccCCCCCC-----CCCCCCCCCCCCCCchHHHHhhccc
Q psy2130 66 LDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSN-AKSKLSAPD-----GGGGDNHSSSGFEEPTWVHEIFQGI 139 (470)
Q Consensus 66 l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~s~i~~~F~g~ 139 (470)
+. +.+..|.|+.|||++||+.+|||.|||+++...+++. .++.+++.+ ..+.+-|.-..+++.|+|.++|.|.
T Consensus 343 IG-~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgm 421 (823)
T COG5560 343 IG-SFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGM 421 (823)
T ss_pred Hh-hhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 66 8888999999999999999999999999997644432 223333222 1234556777888999999999999
Q ss_pred cccceeccccCCcccccCCCcccccccC----------------------------------------------------
Q psy2130 140 LTSETKCLNCETVSSKDEDFFDLQVDIK---------------------------------------------------- 167 (470)
Q Consensus 140 ~~~~~~C~~C~~~s~~~~~f~~Lsl~i~---------------------------------------------------- 167 (470)
+++++.|+.|+.+|++++||.+|+||+|
T Consensus 422 yKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v 501 (823)
T COG5560 422 YKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKV 501 (823)
T ss_pred hhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeE
Confidence 9999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy2130 168 -------------------------------------------------------------------------------- 167 (470)
Q Consensus 168 -------------------------------------------------------------------------------- 167 (470)
T Consensus 502 ~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE 581 (823)
T COG5560 502 MCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKE 581 (823)
T ss_pred EEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2130 168 -------------------------------------------------------------------------------- 167 (470)
Q Consensus 168 -------------------------------------------------------------------------------- 167 (470)
T Consensus 582 ~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~ 661 (823)
T COG5560 582 FEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDP 661 (823)
T ss_pred HHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCc
Confidence
Q ss_pred -----------CCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcch
Q psy2130 168 -----------QNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCY 236 (470)
Q Consensus 168 -----------~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy 236 (470)
...||++||..|.++|.+...+.|.|+.|+...++.
T Consensus 662 lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqas--------------------------------- 708 (823)
T COG5560 662 LWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQAS--------------------------------- 708 (823)
T ss_pred cchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhh---------------------------------
Confidence 247999999999999999888999999999999998
Q ss_pred hHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHH
Q psy2130 237 SNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEF 316 (470)
Q Consensus 237 ~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~ 316 (470)
T Consensus 709 -------------------------------------------------------------------------------- 708 (823)
T COG5560 709 -------------------------------------------------------------------------------- 708 (823)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCc-ccccccCCCCCCCCCcceEEEEEEEeecCC
Q psy2130 317 LNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSDDAVNPDRMYNLVAVVIHCGSG 395 (470)
Q Consensus 317 ~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~-~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~ 395 (470)
|+..++++|.+|+|||+||+.... ...|+...|+||. +|||+.+.....++...|.|+||=.|+|.
T Consensus 709 ----------KqmelwrlP~iLiihLkRFss~rs--frdKiddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygg- 775 (823)
T COG5560 709 ----------KQMELWRLPMILIIHLKRFSSVRS--FRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGG- 775 (823)
T ss_pred ----------hhhhhhcCChheeeehhhhhhccc--chhhhhhhhccccccccccceEEeecCcceEEEeeeccccccc-
Confidence 999999999999999999997653 3489999999998 68888776655556689999999999998
Q ss_pred CCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEecC
Q psy2130 396 PNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRD 453 (470)
Q Consensus 396 ~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~ 453 (470)
..+|||+||+|+ +++||+|||+.|++|.+++. .+..||+|||+|+.
T Consensus 776 lsgGHYtAyarn~~n~~wy~fdDsritevdped~------------vtssaYvLFyrrk~ 823 (823)
T COG5560 776 LSGGHYTAYARNFANNGWYLFDDSRITEVDPEDS------------VTSSAYVLFYRRKS 823 (823)
T ss_pred cCCcceeeeeecccCCceEEecCccccccCcccc------------ccceeEEEEEEecC
Confidence 999999999997 78999999999999988765 48899999999974
No 12
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-53 Score=381.80 Aligned_cols=299 Identities=24% Similarity=0.315 Sum_probs=230.5
Q ss_pred CCCCCccccccc-CCchhhhh--hhhccchHHHH-----------------------------Hhhh---cCCccchhhH
Q psy2130 16 FPPNERYFGLVN-GKTCKEKE--DRIEKSQPFWE-----------------------------QTSL---QDKISLGWEC 60 (470)
Q Consensus 16 ~~~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~-----------------------------~~~~---~~~~~~~~~~ 60 (470)
...+..++||+| |||||||+ |||+.+.++-. .+.. .-......+.
T Consensus 65 ~~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~ 144 (415)
T COG5533 65 RKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPR 144 (415)
T ss_pred hhcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchH
Confidence 334667899999 99999999 99999999811 1100 0111222333
Q ss_pred HHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCC---------CCCCCCCCCCCCCCCCCchH
Q psy2130 61 SLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLS---------APDGGGGDNHSSSGFEEPTW 131 (470)
Q Consensus 61 ~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~s~ 131 (470)
+|++.+. ..++.|++..|||||||+.++||.|||+++....++.-..-.. +-..-.+-.|......+.++
T Consensus 145 nF~~i~~-~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~ 223 (415)
T COG5533 145 NFIDILS-GRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSL 223 (415)
T ss_pred HHHHHHc-cccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHH
Confidence 7899998 8999999999999999999999999999987654422111000 01111234567777888899
Q ss_pred HHHhhccccccceeccccCCcccccCCCcccccccCC--CCCHHHHhccCCccccccCCCccccCCccccccccCCCccc
Q psy2130 132 VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ--NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISA 209 (470)
Q Consensus 132 i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~--~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~ 209 (470)
|.+.|.|+..++++|..|++.|.++.+|..|.+|++. .+-|.+|++.|.++|.+++++.|+|++|+++..++
T Consensus 224 v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~------ 297 (415)
T COG5533 224 VAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSR------ 297 (415)
T ss_pred HHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccch------
Confidence 9999999999999999999999999999999999987 45689999999999999999999999999998888
Q ss_pred cccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCcc
Q psy2130 210 LEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSI 289 (470)
Q Consensus 210 ~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~ 289 (470)
T Consensus 298 -------------------------------------------------------------------------------- 297 (415)
T COG5533 298 -------------------------------------------------------------------------------- 297 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceE----ecCc
Q psy2130 290 APKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRV----VFPL 365 (470)
Q Consensus 290 ~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v----~fp~ 365 (470)
|+..|.++|.+|+|+|+||...-... .|+...- ++|-
T Consensus 298 -------------------------------------K~~~I~~lP~~LII~i~RF~i~V~~~--~kiD~p~gw~~~~~~ 338 (415)
T COG5533 298 -------------------------------------KRMEILVLPDVLIIHISRFHISVMGR--KKIDTPQGWKNTASV 338 (415)
T ss_pred -------------------------------------heEEEEecCceEEEEeeeeeEEeecc--cccCCCcchhccCCc
Confidence 99999999999999999998532211 3333222 2222
Q ss_pred cccccc-CCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcE
Q psy2130 366 ELRLFH-LSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETG 444 (470)
Q Consensus 366 ~ldl~~-~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~a 444 (470)
+..+.+ +.....-.+..|+|.|||||.|+ ..+|||+++|+.++.|+.|||+.|++++-..- ....++
T Consensus 339 e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~-L~gGHY~s~v~~~~~W~~~dDs~vr~~~~~t~-----------~~~pSs 406 (415)
T COG5533 339 EVNVTLLFNNGIGYIPRKYSLLGVVCHNGT-LNGGHYFSEVKRSGTWNVYDDSQVRKGSRTTS-----------GSHPSS 406 (415)
T ss_pred eecccccccCCCCCCccceeEEEEEeecce-ecCceeEEeeeecCceEEechhheeeccceec-----------ccCCcc
Confidence 222211 22233445689999999999998 99999999999999999999999999865321 245689
Q ss_pred EEEEEEec
Q psy2130 445 YILFYQSR 452 (470)
Q Consensus 445 YiLfY~r~ 452 (470)
|||||+|.
T Consensus 407 YilFY~r~ 414 (415)
T COG5533 407 YILFYTRS 414 (415)
T ss_pred eEEEEEec
Confidence 99999985
No 13
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6e-51 Score=399.90 Aligned_cols=248 Identities=25% Similarity=0.422 Sum_probs=208.5
Q ss_pred cccc-CCchhhhh--hhhccchHHHHHhhh----------------------------cCCc--------------cchh
Q psy2130 24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSL----------------------------QDKI--------------SLGW 58 (470)
Q Consensus 24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~----------------------------~~~~--------------~~~~ 58 (470)
||.| |||||||| |||+++|+|...+.. ..+. ....
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 8999 99999999 999999999221110 0000 0122
Q ss_pred hHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhcc
Q psy2130 59 ECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQG 138 (470)
Q Consensus 59 ~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g 138 (470)
+..|+..++ ...+.|.++.|||||||+++||+.|++++... ..+.+.++|+|
T Consensus 81 p~~~~~~l~-~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~---------------------------~~~~~~~~f~~ 132 (311)
T cd02658 81 PSMFKALIG-KGHPEFSTMRQQDALEFLLHLIDKLDRESFKN---------------------------LGLNPNDLFKF 132 (311)
T ss_pred cHHHHHHHh-ccChhhcccccccHHHHHHHHHHHHHHhhccc---------------------------ccCCchhheEE
Confidence 337777777 78899999999999999999999999987521 11236689999
Q ss_pred ccccceeccccCCcccccCCCcccccccCCC--------------CCHHHHhccCCccccccCCCccccCCccccccccC
Q psy2130 139 ILTSETKCLNCETVSSKDEDFFDLQVDIKQN--------------TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQG 204 (470)
Q Consensus 139 ~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~--------------~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~ 204 (470)
.+.++++|..|+.++.+.++|.+|+|++|.. .+|++||+.|+.+|.+ .+.|+.|+.+..+.
T Consensus 133 ~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i----~~~C~~C~~~~~a~- 207 (311)
T cd02658 133 MIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETI----EDFCSTCKEKTTAT- 207 (311)
T ss_pred EeeEEEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCcccc----cccccCCCCcccEE-
Confidence 9999999999999999999999999999853 4999999999999887 36799999988888
Q ss_pred CCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCC
Q psy2130 205 PNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK 284 (470)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~ 284 (470)
T Consensus 208 -------------------------------------------------------------------------------- 207 (311)
T cd02658 208 -------------------------------------------------------------------------------- 207 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecC
Q psy2130 285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFP 364 (470)
Q Consensus 285 ~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp 364 (470)
++..|.++|++|+|+|+||.++... ...|+...|.||
T Consensus 208 ------------------------------------------k~~~i~~lP~vLii~LkRF~~~~~~-~~~Ki~~~v~~p 244 (311)
T cd02658 208 ------------------------------------------KTTGFKTFPDYLVINMKRFQLLENW-VPKKLDVPIDVP 244 (311)
T ss_pred ------------------------------------------EEEEeecCCceEEEEeEEEEecCCC-ceEeeccccccC
Confidence 8899999999999999999996432 347999999999
Q ss_pred cccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecC----CcEEEEeCcceeeechhhhhhhcCCCCCCCCC
Q psy2130 365 LELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH----DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKS 440 (470)
Q Consensus 365 ~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~----~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~ 440 (470)
..+ ....|+|+|||+|.|.+.++|||++|+|.. ++||+|||+.|+++++.+| .
T Consensus 245 ~~l-----------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~------------~ 301 (311)
T cd02658 245 EEL-----------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPE------------M 301 (311)
T ss_pred CcC-----------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccc------------c
Confidence 877 346899999999999878999999999987 8999999999999998777 4
Q ss_pred CCcEEEEEEE
Q psy2130 441 SETGYILFYQ 450 (470)
Q Consensus 441 ~~~aYiLfY~ 450 (470)
..+||||||+
T Consensus 302 ~~~~YilfY~ 311 (311)
T cd02658 302 KKLGYIYFYQ 311 (311)
T ss_pred CCcceEEEEC
Confidence 7899999996
No 14
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.7e-50 Score=407.25 Aligned_cols=268 Identities=21% Similarity=0.293 Sum_probs=212.3
Q ss_pred CCccccccc-CCchhhhh--hhhccchHHHHHhhhc---------------------------CC-ccchhhHHHHHHhh
Q psy2130 19 NERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ---------------------------DK-ISLGWECSLILELD 67 (470)
Q Consensus 19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~---------------------------~~-~~~~~~~~~~~~l~ 67 (470)
.+|++||.| |||||||| |||+++|+|...+... .. .....+..|+++++
T Consensus 116 ~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~ 195 (440)
T cd02669 116 LPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVS 195 (440)
T ss_pred cCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHH
Confidence 457999999 99999999 9999999993322211 00 02233337778887
Q ss_pred cccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceecc
Q psy2130 68 LCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCL 147 (470)
Q Consensus 68 ~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~ 147 (470)
....+.|.++.||||||||.+|||.||+++.... ....++|.++|+|++.++++|.
T Consensus 196 ~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~------------------------~~~~~ii~~~F~G~l~~~~~c~ 251 (440)
T cd02669 196 KVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK------------------------KPNSSIIHDCFQGKVQIETQKI 251 (440)
T ss_pred hhcccccCCcccCCHHHHHHHHHHHHHHHhccCC------------------------CCCCCcceeccCceEEEEEEee
Confidence 4445689999999999999999999999885321 2356789999999999999987
Q ss_pred ccC---------------CcccccCCCcccccccCCCCC-----HHHHhccCCccccccCCCccccCCccccccccCCCc
Q psy2130 148 NCE---------------TVSSKDEDFFDLQVDIKQNTS-----ITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNI 207 (470)
Q Consensus 148 ~C~---------------~~s~~~~~f~~Lsl~i~~~~s-----l~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~ 207 (470)
.|. ..+.+.++|++|+|+||.... ...+|..+...|.+ +.|.|+.|.....+.
T Consensus 252 ~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L---~ky~~~~c~~~~~a~---- 324 (440)
T cd02669 252 KPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLL---KKYDGKTETELKDSL---- 324 (440)
T ss_pred cccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHH---HhcCCccceecccce----
Confidence 654 246778999999999997421 12333344444445 458888887766666
Q ss_pred cccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCC
Q psy2130 208 SALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVG 287 (470)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 287 (470)
T Consensus 325 -------------------------------------------------------------------------------- 324 (440)
T cd02669 325 -------------------------------------------------------------------------------- 324 (440)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcc-
Q psy2130 288 SIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE- 366 (470)
Q Consensus 288 ~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~- 366 (470)
++..|.++|++|+|||+||.++. ....|+.+.|+||..
T Consensus 325 ---------------------------------------k~~~I~~LP~vLiihLKRF~~~~--~~~~K~~t~V~FP~~~ 363 (440)
T cd02669 325 ---------------------------------------KRYLISRLPKYLIFHIKRFSKNN--FFKEKNPTIVNFPIKN 363 (440)
T ss_pred ---------------------------------------EEEEEeeCCcEEEEEEecccCCC--CccccCCCEEECCCCc
Confidence 88999999999999999999875 345899999999997
Q ss_pred cccccCCCC---CCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCC
Q psy2130 367 LRLFHLSDD---AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSS 441 (470)
Q Consensus 367 ldl~~~~~~---~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~ 441 (470)
|||.+++.. .......|+|+|||+|.|..+.+|||+||+|+ +++||+|||+.|+++++++| ..
T Consensus 364 LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v------------~~ 431 (440)
T cd02669 364 LDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLI------------FL 431 (440)
T ss_pred cchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHh------------cc
Confidence 899998753 23466899999999999994499999999996 58999999999999999988 57
Q ss_pred CcEEEEEEE
Q psy2130 442 ETGYILFYQ 450 (470)
Q Consensus 442 ~~aYiLfY~ 450 (470)
.+||||||+
T Consensus 432 ~eaYll~Y~ 440 (440)
T cd02669 432 SESYIQIWE 440 (440)
T ss_pred CCceEEEeC
Confidence 899999996
No 15
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-48 Score=365.84 Aligned_cols=209 Identities=34% Similarity=0.638 Sum_probs=183.6
Q ss_pred cccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhc
Q psy2130 24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSE 100 (470)
Q Consensus 24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~ 100 (470)
||+| |||||||| |+|+++|+|...+..-. .||||||||..||+.|+..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~-------------------------~QqDa~EFl~~ll~~l~~~---- 51 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL-------------------------EQQDAHELFQVLLETLEQL---- 51 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH-------------------------hhcCHHHHHHHHHHHHHHh----
Confidence 8999 99999999 99999999854332111 7999999999999999932
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCccc-ccCCCcccccccCCC-----CCHHH
Q psy2130 101 RPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSS-KDEDFFDLQVDIKQN-----TSITQ 174 (470)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~-~~~~f~~Lsl~i~~~-----~sl~~ 174 (470)
+.++|.|++.++++|..|++++. +.|+|.+|+|+||.. .+|++
T Consensus 52 -------------------------------i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~ 100 (240)
T cd02662 52 -------------------------------LKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEH 100 (240)
T ss_pred -------------------------------ccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCCCCCCCHHH
Confidence 34799999999999999999966 599999999999974 69999
Q ss_pred HhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHH
Q psy2130 175 CLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRV 254 (470)
Q Consensus 175 ~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i 254 (470)
||+.|+.+|.+ ..|.|++| .
T Consensus 101 ~L~~~~~~E~l---~~~~C~~C------~--------------------------------------------------- 120 (240)
T cd02662 101 CLDDFLSTEII---DDYKCDRC------Q--------------------------------------------------- 120 (240)
T ss_pred HHHHhcCcccc---cCcCCCCC------e---------------------------------------------------
Confidence 99999999998 45899999 2
Q ss_pred hccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCC
Q psy2130 255 LEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKL 334 (470)
Q Consensus 255 ~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~l 334 (470)
..|.++
T Consensus 121 --------------------------------------------------------------------------~~i~~l 126 (240)
T cd02662 121 --------------------------------------------------------------------------TVIVRL 126 (240)
T ss_pred --------------------------------------------------------------------------EEeecC
Confidence 235789
Q ss_pred CceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecC------
Q psy2130 335 PMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH------ 408 (470)
Q Consensus 335 P~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~------ 408 (470)
|++|+|||+||.++.. +...|+...|.||+.| ....|+|+|||+|.|. ..+|||++|+|..
T Consensus 127 P~vLii~LkRF~~~~~-~~~~K~~~~v~fp~~l-----------~~~~Y~L~avi~H~G~-~~~GHY~~~~k~~~~~~~~ 193 (240)
T cd02662 127 PQILCIHLSRSVFDGR-GTSTKNSCKVSFPERL-----------PKVLYRLRAVVVHYGS-HSSGHYVCYRRKPLFSKDK 193 (240)
T ss_pred CcEEEEEEEEEEEcCC-CceeeeccEEECCCcc-----------CCceEEEEEEEEEecc-CCCceEEEEEeCCCccccc
Confidence 9999999999999876 5668999999999988 4568999999999998 5999999999976
Q ss_pred ----------------CcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130 409 ----------------DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450 (470)
Q Consensus 409 ----------------~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~ 450 (470)
+.||+|||+.|+++++++|. ...+||||||+
T Consensus 194 ~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~-----------~~~~aY~LfYe 240 (240)
T cd02662 194 EPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVL-----------EQKSAYMLFYE 240 (240)
T ss_pred ccccccccccccCccCCCEEEEechheEEeCHHHHh-----------hCCCEEEEEeC
Confidence 89999999999999998883 26799999996
No 16
>KOG1868|consensus
Probab=100.00 E-value=6.7e-47 Score=388.15 Aligned_cols=302 Identities=30% Similarity=0.419 Sum_probs=239.8
Q ss_pred CCCccccccc-CCchhhhh--hhhccchHHH--------HH-----------------------hhhcCCccchhhHHHH
Q psy2130 18 PNERYFGLVN-GKTCKEKE--DRIEKSQPFW--------EQ-----------------------TSLQDKISLGWECSLI 63 (470)
Q Consensus 18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~--------~~-----------------------~~~~~~~~~~~~~~~~ 63 (470)
...+++||.| |||||||+ |||+.++.|. .+ ...........+..|+
T Consensus 297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~ 376 (653)
T KOG1868|consen 297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFI 376 (653)
T ss_pred cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHH
Confidence 4568999999 99999999 9999999881 00 0111111223344888
Q ss_pred HHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCC---------CCCCCCCCCCCCCCCCCchHHHH
Q psy2130 64 LELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLS---------APDGGGGDNHSSSGFEEPTWVHE 134 (470)
Q Consensus 64 ~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~s~i~~ 134 (470)
..+. ++.+.|.++.|||||||+.++++.||+|++....+........ .......-.|........+.|.+
T Consensus 377 ~~~~-~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~ 455 (653)
T KOG1868|consen 377 RVLK-RYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGD 455 (653)
T ss_pred HHHh-hcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHH
Confidence 8888 9999999999999999999999999999987654321111110 01111122344444455566999
Q ss_pred hhccccccceeccccCCcccccCCCcccccccCC------CCCHHHHhccCCccccccCCCccccCCccccccccCCCcc
Q psy2130 135 IFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ------NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNIS 208 (470)
Q Consensus 135 ~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~------~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~ 208 (470)
+|.|++.+.++|..|++.+.++++|.+|+|+||. .++|++|++.|++.|.+++++.|.|++|+.+.....
T Consensus 456 lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~---- 531 (653)
T KOG1868|consen 456 LFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKT---- 531 (653)
T ss_pred HHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccc----
Confidence 9999999999999999999999999999999996 266999999999999999999999999998754420
Q ss_pred ccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCc
Q psy2130 209 ALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGS 288 (470)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ 288 (470)
T Consensus 532 -------------------------------------------------------------------------------- 531 (653)
T KOG1868|consen 532 -------------------------------------------------------------------------------- 531 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCc-cc
Q psy2130 289 IAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-EL 367 (470)
Q Consensus 289 ~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~-~l 367 (470)
. |...|+++|++|++||+||..++ +...|....|+||+ +.
T Consensus 532 ----------------l---------------------K~~~i~~lp~iLiihL~Rf~~~~--~~~~k~~~~v~~~~~~~ 572 (653)
T KOG1868|consen 532 ----------------L---------------------KKLTILRLPKILIIHLKRFSSDG--NSFNKLSTGVDFPLREA 572 (653)
T ss_pred ----------------c---------------------ceeeeecCCHHHHHHHHHhccCc--ccccccceeeccchHhh
Confidence 0 78899999999999999999876 34478889999998 45
Q ss_pred ccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEE
Q psy2130 368 RLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445 (470)
Q Consensus 368 dl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aY 445 (470)
++.+......+....|+|+|||+|.|+ ..+|||+||++. .+.|+.|||+.|+.++..++ ....||
T Consensus 573 ~~~~~~~~~~~~~~~Y~L~aVv~H~Gt-l~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~------------~~s~aY 639 (653)
T KOG1868|consen 573 DLSPRFAEKGNNPKSYRLYAVVNHSGT-LNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDV------------GSSSAY 639 (653)
T ss_pred hhchhccccCCCccceeeEEEEeccCc-ccCCceEEEEeecCCCceEEecCeeeeccccccc------------cCCCce
Confidence 555555555666778999999999995 999999999986 47899999999998888777 368999
Q ss_pred EEEEEecCCCc
Q psy2130 446 ILFYQSRDSTD 456 (470)
Q Consensus 446 iLfY~r~~~~~ 456 (470)
||||+|.+..+
T Consensus 640 IlFY~~~~~~~ 650 (653)
T KOG1868|consen 640 ILFYERLGIFE 650 (653)
T ss_pred EEEeecCCccc
Confidence 99999987654
No 17
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.5e-46 Score=349.67 Aligned_cols=217 Identities=39% Similarity=0.677 Sum_probs=195.5
Q ss_pred cccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhc
Q psy2130 24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSE 100 (470)
Q Consensus 24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~ 100 (470)
||.| |||||+|| |+|++ .||||+||+.+||+.|+
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~-------------------------------------~QqDa~Ef~~~ll~~l~------ 37 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA-------------------------------------DQQDAQEFLLFLLDGLH------ 37 (230)
T ss_pred CccccCcchhhhHHHHHHHH-------------------------------------hhhhHHHHHHHHHHHHh------
Confidence 8999 99999999 99976 69999999999999999
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCCC------CCHHH
Q psy2130 101 RPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQN------TSITQ 174 (470)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~------~sl~~ 174 (470)
+.+.++|+|++..+++|..|++.+.+.++|+.|+|++|.. .+|++
T Consensus 38 -----------------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~~~~~~sl~~ 88 (230)
T cd02674 38 -----------------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLED 88 (230)
T ss_pred -----------------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccCCCCCCCHHH
Confidence 2377999999999999999999999999999999999964 49999
Q ss_pred HhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHH
Q psy2130 175 CLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRV 254 (470)
Q Consensus 175 ~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i 254 (470)
||+.|+.+|.+++.+.+.|++|+.+..+.
T Consensus 89 ~L~~~~~~e~~~~~~~~~C~~C~~~~~~~--------------------------------------------------- 117 (230)
T cd02674 89 CLRLFTKEETLDGDNAWKCPKCKKKRKAT--------------------------------------------------- 117 (230)
T ss_pred HHHHhcCccccCCCCceeCCCCCCccceE---------------------------------------------------
Confidence 99999999999999999999999988777
Q ss_pred hccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCC
Q psy2130 255 LEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKL 334 (470)
Q Consensus 255 ~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~l 334 (470)
+...+.++
T Consensus 118 ------------------------------------------------------------------------~~~~i~~l 125 (230)
T cd02674 118 ------------------------------------------------------------------------KKLTISRL 125 (230)
T ss_pred ------------------------------------------------------------------------EEEEEecC
Confidence 78889999
Q ss_pred CceEEEEeeeeeeeccccccccccceEecCc-ccccccCCC-CCCCCCcceEEEEEEEeecCCCCCcEEEEEEecC--Cc
Q psy2130 335 PMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSD-DAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH--DF 410 (470)
Q Consensus 335 P~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~-~ldl~~~~~-~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~--~~ 410 (470)
|++|+|+|+||.++. ....|+...|.||. .+|+.++.. ........|+|+|||+|.|.. .+|||++|+|.. +.
T Consensus 126 P~iLii~l~R~~~~~--~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~-~~GHY~~~~~~~~~~~ 202 (230)
T cd02674 126 PKVLIIHLKRFSFSR--GSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNETND 202 (230)
T ss_pred ChhhEeEhhheecCC--CCcccCCceEeccccccccccccCcccCCCCceEEEEEEEEeeCCC-CCcEEEEEEECCCCCc
Confidence 999999999999976 44589999999995 588877642 233466889999999999994 999999999976 89
Q ss_pred EEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130 411 WLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450 (470)
Q Consensus 411 W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~ 450 (470)
|++|||+.|++++++++ .+.+||||||+
T Consensus 203 W~~fnD~~V~~i~~~~~------------~~~~~YlL~Y~ 230 (230)
T cd02674 203 WYKFDDSRVTKVSESSV------------VSSSAYILFYE 230 (230)
T ss_pred eEEEcCCeEEEcCHHHc------------cCCCceEEEeC
Confidence 99999999999999887 37899999996
No 18
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-45 Score=345.32 Aligned_cols=236 Identities=25% Similarity=0.413 Sum_probs=183.9
Q ss_pred ccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcC
Q psy2130 25 LVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSER 101 (470)
Q Consensus 25 L~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~ 101 (470)
|.| ||.||+|| |+|.++ + +..+.|.+++||||||||++|||.|++++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i-------------------------~-~~~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~ 55 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSI-------------------------G-KINTEFDNDDQQDAHEFLLTLLEAIDDIMQVNR 55 (245)
T ss_pred ceecCCeeeehhHHHHHHHH-------------------------h-hhhhhcCCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 789 99999999 998532 2 556899999999999999999999999886543
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCC--CCCHHHHhccC
Q psy2130 102 PQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ--NTSITQCLRGF 179 (470)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~--~~sl~~~L~~~ 179 (470)
+....... ......+.++|+|++.++++|..|++++.+.++|++|+|++|. ..++++|+..|
T Consensus 56 ~~~~~~~~----------------~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~~le~l~~~~ 119 (245)
T cd02673 56 TNVPPSNI----------------EIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLDIDELLISNF 119 (245)
T ss_pred ccCCCCcc----------------cccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcchHHHHHHHh
Confidence 22110000 0011124588999999999999999999999999999999997 46788999888
Q ss_pred CccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccc
Q psy2130 180 SSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKA 259 (470)
Q Consensus 180 ~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~ 259 (470)
.+.+.+ +|.|++|+.+ .+.
T Consensus 120 ~~~~~~----e~~C~~C~~~-~a~-------------------------------------------------------- 138 (245)
T cd02673 120 KTWSPI----EKDCSSCKCE-SAI-------------------------------------------------------- 138 (245)
T ss_pred hccccc----CccCCCCCCc-cce--------------------------------------------------------
Confidence 877664 5899999875 444
Q ss_pred ccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEE
Q psy2130 260 KNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILA 339 (470)
Q Consensus 260 ~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~ 339 (470)
+..+|.++|++|+
T Consensus 139 -------------------------------------------------------------------k~~~i~~~P~vL~ 151 (245)
T cd02673 139 -------------------------------------------------------------------SSERIMTFPECLS 151 (245)
T ss_pred -------------------------------------------------------------------eechhhhCChhhE
Confidence 6677999999999
Q ss_pred EEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEec---CCcEEEEeC
Q psy2130 340 LHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS---HDFWLLFDD 416 (470)
Q Consensus 340 i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~---~~~W~~~nD 416 (470)
|+|+||.+..... ..+..+ .+++.++.. ....|+|+|||+|.|.+.++|||+||+|. +++||.|||
T Consensus 152 i~lkRf~~~~~~~------~~~~~~-~~~~~~~~~----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD 220 (245)
T cd02673 152 INLKRYKLRIATS------DYLKKN-EEIMKKYCG----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSD 220 (245)
T ss_pred EeeEeeeeccccc------cccccc-ccccccccC----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeC
Confidence 9999997653221 112111 234444442 45679999999999987899999999996 579999999
Q ss_pred cceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130 417 DVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450 (470)
Q Consensus 417 ~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~ 450 (470)
+.|+++++++|.+ ....+||||||+
T Consensus 221 ~~V~~v~~~~v~~---------~~~~~aYiLFY~ 245 (245)
T cd02673 221 DEIRPVSKNDVST---------NARSSGYLIFYD 245 (245)
T ss_pred ceeeEcCHHHHhh---------ccCCceEEEEEC
Confidence 9999999998832 125799999996
No 19
>KOG1866|consensus
Probab=100.00 E-value=5.3e-47 Score=377.42 Aligned_cols=290 Identities=25% Similarity=0.433 Sum_probs=242.9
Q ss_pred Cccccccc-CCchhhhh--hhhccchHH------HHHh-----------------------hhcCCccchhhHHHHHHhh
Q psy2130 20 ERYFGLVN-GKTCKEKE--DRIEKSQPF------WEQT-----------------------SLQDKISLGWECSLILELD 67 (470)
Q Consensus 20 ~~~~GL~N-GNtCy~Ns--Q~L~~~~~f------~~~~-----------------------~~~~~~~~~~~~~~~~~l~ 67 (470)
.+.|||+| |+|||||+ |-|+++|.+ +..+ ..++- ...++..|-+.++
T Consensus 93 ~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~l-QyyVPeg~Wk~Fr 171 (944)
T KOG1866|consen 93 EGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQL-QYYVPEGFWKQFR 171 (944)
T ss_pred cceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhh-hhhcchhHHHHhh
Confidence 46899999 99999999 999999888 1111 11111 1111222333333
Q ss_pred cccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceecc
Q psy2130 68 LCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCL 147 (470)
Q Consensus 68 ~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~ 147 (470)
--+......+||||-||+..|||.+++.+++.. .+-++...|+|....+..|.
T Consensus 172 -~~~~pln~reqhDA~eFf~sLld~~De~LKklg--------------------------~p~lf~n~f~G~ysdqKIC~ 224 (944)
T KOG1866|consen 172 -LWGEPLNLREQHDALEFFNSLLDSLDEALKKLG--------------------------HPQLFSNTFGGSYSDQKICQ 224 (944)
T ss_pred -ccCCccchHhhhhHHHHHHHHHHHHHHHHHHhC--------------------------CcHHHHHHhcCccchhhhhc
Confidence 223456778999999999999999999997542 34568899999999999999
Q ss_pred ccCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccC
Q psy2130 148 NCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFG 227 (470)
Q Consensus 148 ~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 227 (470)
.|-+.....|+|..|+|+|. ..+|++.|+.|++.|.++|.|.|+|++|..+....
T Consensus 225 ~CpHRY~~eE~F~~l~l~i~-~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~Tv------------------------ 279 (944)
T KOG1866|consen 225 GCPHRYECEESFTTLNLDIR-HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTV------------------------ 279 (944)
T ss_pred cCCcccCccccceeeeeecc-cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhH------------------------
Confidence 99999999999999999999 88999999999999999999999999999998777
Q ss_pred cccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCc
Q psy2130 228 LVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDN 307 (470)
Q Consensus 228 L~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~ 307 (470)
T Consensus 280 -------------------------------------------------------------------------------- 279 (944)
T KOG1866|consen 280 -------------------------------------------------------------------------------- 279 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-----------
Q psy2130 308 YMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA----------- 376 (470)
Q Consensus 308 ~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~----------- 376 (470)
++..|.+||++|+|+|+||.++-..+...|.+..+.||-+|||.+++..+
T Consensus 280 -------------------kRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~ 340 (944)
T KOG1866|consen 280 -------------------KRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVES 340 (944)
T ss_pred -------------------HHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhhhccccCCc
Confidence 99999999999999999999998877889999999999999999986332
Q ss_pred ------CCCCcceEEEEEEEeecCCCCCcEEEEEEec-----CCcEEEEeCcceeeechhhhh-hhcCCCC-------CC
Q psy2130 377 ------VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS-----HDFWLLFDDDVVDKIDQSTIE-DFFGLTS-------DH 437 (470)
Q Consensus 377 ------~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~-----~~~W~~~nD~~V~~v~~~~v~-~~~g~~~-------~~ 437 (470)
+..+.+|+|+||++|.|. +++|||++|++. +++||+|||..|++++..+++ ++|||.. +.
T Consensus 341 g~~~e~s~~t~~YeLvGVlvHSGq-AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~ 419 (944)
T KOG1866|consen 341 GQQLEQSAGTTKYELVGVLVHSGQ-ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSY 419 (944)
T ss_pred CcccccccCcceeEEEEEEEeccc-ccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccch
Confidence 235678999999999999 999999999984 479999999999999998886 5888761 23
Q ss_pred CCCCCcEEEEEEEecCCCccccCCC
Q psy2130 438 QKSSETGYILFYQSRDSTDARTMNS 462 (470)
Q Consensus 438 ~~~~~~aYiLfY~r~~~~~~~~~~~ 462 (470)
+.++++||||||+|.+..+.+..++
T Consensus 420 rrR~WNAYmlFYer~~d~p~~~~p~ 444 (944)
T KOG1866|consen 420 RRRWWNAYMLFYERMDDIPTDDEPI 444 (944)
T ss_pred HHHhhhhHHHHHHHhcCCCcccccc
Confidence 3489999999999999988877665
No 20
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.2e-45 Score=334.37 Aligned_cols=222 Identities=23% Similarity=0.378 Sum_probs=185.0
Q ss_pred cccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhc
Q psy2130 24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSE 100 (470)
Q Consensus 24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~ 100 (470)
||.| ||||++|+ |+|++ .||||+||+..|||.|++++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-------------------------------------~QQDa~Ef~~~Lld~Le~~l~~~ 43 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS-------------------------------------QQQDVSEFTHLLLDWLEDAFQAA 43 (228)
T ss_pred CccccCcchhHHHHHHHHHH-------------------------------------HHHHHHHHHHHHHHHHHHHhccc
Confidence 8999 99999999 99975 59999999999999999998632
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCCCCCHHHHhccCC
Q psy2130 101 RPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFS 180 (470)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~ 180 (470)
.... ....+..++|.++|+|++.+++.| |+..+.+.|+|++|+|+|.+..+|++||+.|+
T Consensus 44 ~~~~------------------~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~~~L~e~L~~~~ 103 (228)
T cd02665 44 AEAI------------------SPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGYGNLHECLEAAM 103 (228)
T ss_pred cccc------------------cccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCCCCHHHHHHHhh
Confidence 1100 011245678999999999976665 88889999999999999999999999999999
Q ss_pred ccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccc
Q psy2130 181 STETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK 260 (470)
Q Consensus 181 ~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~ 260 (470)
.+|.+++++ |.+| ..+.
T Consensus 104 ~ee~l~~~~---~~~~---~~~~--------------------------------------------------------- 120 (228)
T cd02665 104 FEGEVELLP---SDHS---VKSG--------------------------------------------------------- 120 (228)
T ss_pred hhccccccc---ccch---hhhh---------------------------------------------------------
Confidence 988886533 2222 2222
Q ss_pred cccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEE
Q psy2130 261 NKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILAL 340 (470)
Q Consensus 261 ~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i 340 (470)
++..|.++|++|+|
T Consensus 121 ------------------------------------------------------------------~~~~i~~lP~vL~i 134 (228)
T cd02665 121 ------------------------------------------------------------------QERWFTELPPVLTF 134 (228)
T ss_pred ------------------------------------------------------------------hhhhhhhCChhhEE
Confidence 56678999999999
Q ss_pred EeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcc
Q psy2130 341 HLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDV 418 (470)
Q Consensus 341 ~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~ 418 (470)
||+||.++. +...|+.+.|+||.+| ....|+|+|||+|.|. +++|||++|+|+ +++|++|||+.
T Consensus 135 ~LkRF~~~~--~~~~Ki~~~v~FP~~l-----------~~~~Y~L~aVi~H~G~-~~~GHY~~~i~~~~~~~W~~fdD~~ 200 (228)
T cd02665 135 ELSRFEFNQ--GRPEKIHDKLEFPQII-----------QQVPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDIS 200 (228)
T ss_pred EeEeeEEcC--CccEECCEEEEeeCcc-----------CCceeEEEEEEEecCC-CCCCEEEEEEEcCCCCEEEEEECCe
Confidence 999999976 4558999999999987 2458999999999998 899999999985 58999999999
Q ss_pred eeeechhhhh-hhcCCCCCCCCCCCcEEEEEEE
Q psy2130 419 VDKIDQSTIE-DFFGLTSDHQKSSETGYILFYQ 450 (470)
Q Consensus 419 V~~v~~~~v~-~~~g~~~~~~~~~~~aYiLfY~ 450 (470)
|+++++++|. +.||+. ...+||||||.
T Consensus 201 V~~~~~~~v~~~~fGg~-----~~~~AYiLfYv 228 (228)
T cd02665 201 VTESSWEEVERDSFGGG-----RNPSAYCLMYI 228 (228)
T ss_pred eEEcCHHHHhhhccCCC-----CCCceEEEEEC
Confidence 9999999885 467764 26899999994
No 21
>KOG0944|consensus
Probab=100.00 E-value=2.4e-43 Score=349.31 Aligned_cols=264 Identities=25% Similarity=0.413 Sum_probs=217.8
Q ss_pred CCCccccccc-CCchhhhh--hhhccchHH-----------------------------HHHhhhcCCcc--------ch
Q psy2130 18 PNERYFGLVN-GKTCKEKE--DRIEKSQPF-----------------------------WEQTSLQDKIS--------LG 57 (470)
Q Consensus 18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f-----------------------------~~~~~~~~~~~--------~~ 57 (470)
.+++++||+| ||+||||| |+|++++.| ...+...+-.. .+
T Consensus 303 ~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qng 382 (763)
T KOG0944|consen 303 FGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNG 382 (763)
T ss_pred cCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCC
Confidence 4678999999 99999999 999999999 11111111111 24
Q ss_pred hhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhc
Q psy2130 58 WECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQ 137 (470)
Q Consensus 58 ~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~ 137 (470)
..+..++.+.++.+|.|..++||||+|||++||+.|.+-... ....++++|.
T Consensus 383 IsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs----------------------------~~~nptd~fr 434 (763)
T KOG0944|consen 383 ISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRS----------------------------SLPNPTDLFR 434 (763)
T ss_pred cCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccc----------------------------cCCCHHHHHH
Confidence 555555555559999999999999999999999999983210 0023679999
Q ss_pred cccccceeccccCCcccccCCCcccccccCC------CCCHHHHhccCCccccccCCCccccCCccccccccCCCccccc
Q psy2130 138 GILTSETKCLNCETVSSKDEDFFDLQVDIKQ------NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALE 211 (470)
Q Consensus 138 g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~------~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~ 211 (470)
..+..+++|..|+++++++++-..|.||||- ..++.+||..|+.+.+ .+|.|..|+.+..++
T Consensus 435 F~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~pq~----~df~s~ac~~K~~a~-------- 502 (763)
T KOG0944|consen 435 FEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEPQV----DDFWSTACGEKKGAT-------- 502 (763)
T ss_pred hhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCCcc----hhhhhHhhcCccccc--------
Confidence 9999999999999999999999999999983 5699999999999944 579999999999998
Q ss_pred cccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccCh
Q psy2130 212 KEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAP 291 (470)
Q Consensus 212 ~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p 291 (470)
T Consensus 503 -------------------------------------------------------------------------------- 502 (763)
T KOG0944|consen 503 -------------------------------------------------------------------------------- 502 (763)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCccccccc
Q psy2130 292 KKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFH 371 (470)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~ 371 (470)
+...++++|.+|+|++.||.+.+ ....|+...|++|+.||++.
T Consensus 503 -----------------------------------kt~~~ksfP~yLiiqv~rf~~~d--w~pkKld~~iempe~ldls~ 545 (763)
T KOG0944|consen 503 -----------------------------------KTTRFKSFPDYLIIQVGRFTLQD--WVPKKLDVSIEMPEELDLSS 545 (763)
T ss_pred -----------------------------------cccccccCCceEEEEeeEEEecC--ceeeeeccceecchhhchhh
Confidence 88999999999999999999943 34589999999999999876
Q ss_pred CCCCC---------------------------------------------------------------------------
Q psy2130 372 LSDDA--------------------------------------------------------------------------- 376 (470)
Q Consensus 372 ~~~~~--------------------------------------------------------------------------- 376 (470)
+...+
T Consensus 546 ~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~ 625 (763)
T KOG0944|consen 546 YRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGN 625 (763)
T ss_pred hhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCC
Confidence 53211
Q ss_pred ---------------------------------------------------------------------------CCCCc
Q psy2130 377 ---------------------------------------------------------------------------VNPDR 381 (470)
Q Consensus 377 ---------------------------------------------------------------------------~~~~~ 381 (470)
.+.+.
T Consensus 626 ~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~ 705 (763)
T KOG0944|consen 626 SPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPG 705 (763)
T ss_pred CCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCc
Confidence 34567
Q ss_pred ceEEEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEec
Q psy2130 382 MYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSR 452 (470)
Q Consensus 382 ~Y~L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~ 452 (470)
.|+|.|+|+|.|+++.+|||||++|+.|+|+.|||++|- .+.+ +.+..+||+||+|.
T Consensus 706 ~Y~L~a~IsHmGts~~sGHYV~hirKegkWVlfNDeKv~-~S~~-------------ppK~lgYvY~y~R~ 762 (763)
T KOG0944|consen 706 KYALFAFISHMGTSAHSGHYVCHIRKEGKWVLFNDEKVA-ASQE-------------PPKDLGYVYLYTRI 762 (763)
T ss_pred ceeEEEEEecCCCCCCCcceEEEEeecCcEEEEcchhhh-hccC-------------ChhhcceEEEEEec
Confidence 899999999999999999999999999999999999987 3332 35889999999995
No 22
>KOG4598|consensus
Probab=100.00 E-value=3.6e-43 Score=347.06 Aligned_cols=283 Identities=27% Similarity=0.496 Sum_probs=248.3
Q ss_pred CCccccccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHH
Q psy2130 19 NERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINE 95 (470)
Q Consensus 19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~e 95 (470)
+.++|||.| .-|||+|+ |+|+..+.|......+.+ ...-...+.+.+.|.... .++|||.+|+.+.++|+|+-
T Consensus 84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~-~~~et~dlt~sfgw~s~e---a~~qhdiqelcr~mfdaleh 159 (1203)
T KOG4598|consen 84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSEN-DSLETKDLTQSFGWTSNE---AYDQHDVQELCRLMFDALEH 159 (1203)
T ss_pred CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCCc-ccccchhhHhhcCCCcch---hhhhhhHHHHHHHHHHHHHh
Confidence 468999999 99999999 999999999888888777 444556888888875544 34699999999999999987
Q ss_pred HHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCC------C
Q psy2130 96 VILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ------N 169 (470)
Q Consensus 96 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~------~ 169 (470)
..+ ..+...+|.+++.|+...-+.|+.|+..+.+.+.|.||+|+|.+ .
T Consensus 160 k~k--------------------------~t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay 213 (1203)
T KOG4598|consen 160 KWK--------------------------GTEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKPFGAIHAY 213 (1203)
T ss_pred hhc--------------------------CchHHHHHHHHhcchHHHHHHHHHcCccccccceeecccccccCCcchhhh
Confidence 543 23346789999999999999999999999999999999999986 4
Q ss_pred CCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchH
Q psy2130 170 TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKP 249 (470)
Q Consensus 170 ~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~ 249 (470)
-+++++|..|+.||.++|.|+|-|++|+++..+.
T Consensus 214 ~sieeal~afvqpe~ldg~nqy~ce~ck~k~dah---------------------------------------------- 247 (1203)
T KOG4598|consen 214 KSVEEALTAFVQPELLDGSNQYMCENCKSKQDAH---------------------------------------------- 247 (1203)
T ss_pred hhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhh----------------------------------------------
Confidence 7899999999999999999999999999999998
Q ss_pred HHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhh
Q psy2130 250 FRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCM 329 (470)
Q Consensus 250 ~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~ 329 (470)
+-+
T Consensus 248 -----------------------------------------------------------------------------kgl 250 (1203)
T KOG4598|consen 248 -----------------------------------------------------------------------------KGL 250 (1203)
T ss_pred -----------------------------------------------------------------------------cCc
Confidence 899
Q ss_pred hhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC---------------------------------
Q psy2130 330 KVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA--------------------------------- 376 (470)
Q Consensus 330 ~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~--------------------------------- 376 (470)
+|+.+|-+|+|||+||.|+-......|++.+++||..|||..|....
T Consensus 251 ~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 330 (1203)
T KOG4598|consen 251 RITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKR 330 (1203)
T ss_pred eeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCccc
Confidence 99999999999999999998877779999999999999987664211
Q ss_pred ---------------------------------CCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceee
Q psy2130 377 ---------------------------------VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDK 421 (470)
Q Consensus 377 ---------------------------------~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~ 421 (470)
..++..|+|+||.+|.|. +.+|||+||+|+ ++.||+|||.+|.-
T Consensus 331 ~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~-a~gghy~ayik~~d~~~w~~fnd~~v~~ 409 (1203)
T KOG4598|consen 331 CTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGN-AAGGHYFAYIKNLDQDRWYVFNDTRVDF 409 (1203)
T ss_pred CcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCC-CCCceeeeeecccCcCceEEecCccccc
Confidence 345677999999999998 999999999995 78999999999999
Q ss_pred echhhhhhhcCCC-CCCCCCCCcEEEEEEEecCCC
Q psy2130 422 IDQSTIEDFFGLT-SDHQKSSETGYILFYQSRDST 455 (470)
Q Consensus 422 v~~~~v~~~~g~~-~~~~~~~~~aYiLfY~r~~~~ 455 (470)
+...+|+..||+. ++-...+.+||||+|+|+|.-
T Consensus 410 ~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id~k 444 (1203)
T KOG4598|consen 410 ATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRIDPK 444 (1203)
T ss_pred cCHHHHHHhhCCCCCCccccCcchhhhhhhhcCcc
Confidence 9999999988874 444456789999999998853
No 23
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-42 Score=347.04 Aligned_cols=286 Identities=29% Similarity=0.479 Sum_probs=238.5
Q ss_pred CCccccccc-CCchhhhh--hhhccchHH-------------------------HHHhhhcCCccchhhHHHHHHhhccc
Q psy2130 19 NERYFGLVN-GKTCKEKE--DRIEKSQPF-------------------------WEQTSLQDKISLGWECSLILELDLCS 70 (470)
Q Consensus 19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f-------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (470)
.+|+|||+| |.|||||| |+||++..| |..+..+. .+....++.+...|
T Consensus 190 eTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~grdSValaLQr~Fynlq~~~--~PvdTteltrsfgW-- 265 (1089)
T COG5077 190 ETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRDSVALALQRLFYNLQTGE--EPVDTTELTRSFGW-- 265 (1089)
T ss_pred ceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHhccC--CCcchHHhhhhcCc--
Confidence 468999999 99999999 999999998 22222222 33334477777766
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccC
Q psy2130 71 SDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCE 150 (470)
Q Consensus 71 ~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~ 150 (470)
..+....|||.|||.+.|.|.|+.... ...-.+.+..+|-|++++-+.|.+-.
T Consensus 266 -ds~dsf~QHDiqEfnrVl~DnLEksmr--------------------------gt~VEnaln~ifVgkmksyikCvnvn 318 (1089)
T COG5077 266 -DSDDSFMQHDIQEFNRVLQDNLEKSMR--------------------------GTVVENALNGIFVGKMKSYIKCVNVN 318 (1089)
T ss_pred -ccchHHHHHhHHHHHHHHHHHHHHhhc--------------------------CChhhhHHhHHHHHHhhceeeEEEec
Confidence 455666799999999999999998432 12235568899999999999999999
Q ss_pred CcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCccc
Q psy2130 151 TVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVN 230 (470)
Q Consensus 151 ~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N 230 (470)
+.|.+.|.||+|.|.+....+|++.++.|.+.|.++|+|.|.|+.-|. +.|.
T Consensus 319 yEsarvedfwdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~Gl-qdAk--------------------------- 370 (1089)
T COG5077 319 YESARVEDFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHGL-QDAK--------------------------- 370 (1089)
T ss_pred hhhhhHHHHHHHHhcccchhhHHHHHHHhhhheeccCCcccccccccc-hhhc---------------------------
Confidence 999999999999999999999999999999999999999999999665 4444
Q ss_pred CCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCcccc
Q psy2130 231 FGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQ 310 (470)
Q Consensus 231 ~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~Q 310 (470)
T Consensus 371 -------------------------------------------------------------------------------- 370 (1089)
T COG5077 371 -------------------------------------------------------------------------------- 370 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC----CCCCcceEEE
Q psy2130 311 QDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA----VNPDRMYNLV 386 (470)
Q Consensus 311 qDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~----~~~~~~Y~L~ 386 (470)
|-.-+.++|++|.++|+||.++-......|++.+.+||+++|+.+|.+.. .+.+..|.|+
T Consensus 371 ----------------KGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~Ly 434 (1089)
T COG5077 371 ----------------KGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLY 434 (1089)
T ss_pred ----------------cceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccCcEEEEE
Confidence 67788999999999999999998888889999999999999999998754 3445899999
Q ss_pred EEEEeecCCCCCcEEEEEEe--cCCcEEEEeCcceeeechhhh-hhhcCCCCC--CCC-------CCCcEEEEEEEecCC
Q psy2130 387 AVVIHCGSGPNRGHYISIVK--SHDFWLLFDDDVVDKIDQSTI-EDFFGLTSD--HQK-------SSETGYILFYQSRDS 454 (470)
Q Consensus 387 avV~H~G~~~~~GHY~a~vr--~~~~W~~~nD~~V~~v~~~~v-~~~~g~~~~--~~~-------~~~~aYiLfY~r~~~ 454 (470)
||++|.|. .+.|||+|++| .+|.||+|||+.|+++.+.+| ++.||++.. .+. +.-+||||+|-|++.
T Consensus 435 gVlVHsGD-l~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~ 513 (1089)
T COG5077 435 GVLVHSGD-LHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSM 513 (1089)
T ss_pred EEEEeccc-cCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhH
Confidence 99999998 99999999999 579999999999999998877 568887511 111 234679999999987
Q ss_pred CccccC
Q psy2130 455 TDARTM 460 (470)
Q Consensus 455 ~~~~~~ 460 (470)
.+.-..
T Consensus 514 ~ddLln 519 (1089)
T COG5077 514 LDDLLN 519 (1089)
T ss_pred HHhhhC
Confidence 766544
No 24
>KOG1867|consensus
Probab=100.00 E-value=3.4e-41 Score=340.59 Aligned_cols=283 Identities=31% Similarity=0.514 Sum_probs=235.2
Q ss_pred Cccccccc-CCchhhhh--hhhccchHH----------------------------HHHhhhcCCccchhhHHHHHHhhc
Q psy2130 20 ERYFGLVN-GKTCKEKE--DRIEKSQPF----------------------------WEQTSLQDKISLGWECSLILELDL 68 (470)
Q Consensus 20 ~~~~GL~N-GNtCy~Ns--Q~L~~~~~f----------------------------~~~~~~~~~~~~~~~~~~~~~l~~ 68 (470)
.++.||+| |+|||||+ |+|.+.+.. +..+....+.....+..++..+|
T Consensus 159 ~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~- 237 (492)
T KOG1867|consen 159 LGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVW- 237 (492)
T ss_pred ecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHH-
Confidence 46789999 99999999 999866555 22222222123344447777777
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccc
Q psy2130 69 CSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLN 148 (470)
Q Consensus 69 ~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~ 148 (470)
+..+.+.+++|||||||+..+++.+|.+....++.. . .........+++...|.|++.+.++|..
T Consensus 238 k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~-----~----------~~~~~~~c~~iv~~~F~G~L~~~v~c~~ 302 (492)
T KOG1867|consen 238 KHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSL-----I----------ASQSNKQCPCIVHTIFSGTLQSDVTCQT 302 (492)
T ss_pred HhCcccccccccchHHHHHHhccccccccccccccc-----c----------cccCCcccccccceeecceeccceeehh
Confidence 889999999999999999999999999871111110 0 0011125688999999999999999999
Q ss_pred cCCcccccCCCcccccccCCC----------CCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCC
Q psy2130 149 CETVSSKDEDFFDLQVDIKQN----------TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDR 218 (470)
Q Consensus 149 C~~~s~~~~~f~~Lsl~i~~~----------~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~ 218 (470)
|+..|.+.++|++|+|+||.. .++.+|+..|...|.......++|..|+.+....
T Consensus 303 c~~~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~--------------- 367 (492)
T KOG1867|consen 303 CGSKSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQEST--------------- 367 (492)
T ss_pred hcceeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccc---------------
Confidence 999999999999999999852 6799999999999988778899999999998888
Q ss_pred CCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHH
Q psy2130 219 FPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRL 298 (470)
Q Consensus 219 ~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l 298 (470)
T Consensus 368 -------------------------------------------------------------------------------- 367 (492)
T KOG1867|consen 368 -------------------------------------------------------------------------------- 367 (492)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCC---
Q psy2130 299 RKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDD--- 375 (470)
Q Consensus 299 ~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~--- 375 (470)
++..+.++|.++.++++||.+....... |+...|.||..+++.+++..
T Consensus 368 ----------------------------kql~~~~lP~~l~~~lkRfe~~~~~~~~-ki~~~v~fp~~l~m~p~~~~~~~ 418 (492)
T KOG1867|consen 368 ----------------------------KQLTIRKLPAVLCLHLKRFEHSATGARE-KIDSYVSFPVLLNMKPYCSSEKL 418 (492)
T ss_pred ----------------------------cccccccCCceeeeeecccccccccccc-ccCcccccchhhcCCcccccccc
Confidence 9999999999999999999998765543 99999999999999987653
Q ss_pred --CCCCCcceEEEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEecC
Q psy2130 376 --AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRD 453 (470)
Q Consensus 376 --~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~ 453 (470)
...++..|+|.|||+|+|. .++|||+||+|..+.|++|||+.|+.+++++| .+..||+|||.+..
T Consensus 419 ~~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r~~~~~~~~dDs~v~~~s~~eV------------l~~~aylLFY~~~~ 485 (492)
T KOG1867|consen 419 KSQDNPDHLYELRAVVVHHGT-VGSGHYVAYRRQSGGWFKCDDSTVTKVSEEEV------------LSSQAYLLFYTQEQ 485 (492)
T ss_pred ccCCCCCceEEEEEEEEeccC-CCCCceEEEEEeCCCcEEEcCeEEEEeeHHHh------------hhchhhheehhHHh
Confidence 2235689999999999999 99999999999999999999999999999999 58899999998866
Q ss_pred CC
Q psy2130 454 ST 455 (470)
Q Consensus 454 ~~ 455 (470)
..
T Consensus 486 ~~ 487 (492)
T KOG1867|consen 486 VE 487 (492)
T ss_pred hh
Confidence 54
No 25
>KOG1873|consensus
Probab=100.00 E-value=2.2e-41 Score=338.49 Aligned_cols=112 Identities=29% Similarity=0.478 Sum_probs=96.9
Q ss_pred hhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-----CCCCcceEEEEEEEeecCCCCCcEE
Q psy2130 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA-----VNPDRMYNLVAVVIHCGSGPNRGHY 401 (470)
Q Consensus 327 ~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~-----~~~~~~Y~L~avV~H~G~~~~~GHY 401 (470)
++..|...|+||+||++||..+.. ++..|.+.++.|++.+|+..+++.. ......|+|.|+|.|.|. ++.|||
T Consensus 739 k~~li~~aPpVltihlKrf~q~~~-~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgt-m~~ghy 816 (877)
T KOG1873|consen 739 KKVLINKAPPVLTIHLKRFFQDIR-GRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGT-MSYGHY 816 (877)
T ss_pred eeeecccCCceeeehHhhhhhhhh-chhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccc-ccCCcc
Confidence 677888999999999999987643 4478999999999999988776432 124468999999999998 999999
Q ss_pred EEEEec----------------------CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEec
Q psy2130 402 ISIVKS----------------------HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSR 452 (470)
Q Consensus 402 ~a~vr~----------------------~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~ 452 (470)
|+|+|. .++||.+.|+.|++|++++| .+.+||||||+|.
T Consensus 817 vayv~~~t~~~~~~~~~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~v------------LkseAYlLFYERI 877 (877)
T KOG1873|consen 817 VAYVRGGTFLDLSAPSNSKDFESDAGIPSGRWYYISDSIVREVSLDEV------------LKSEAYLLFYERI 877 (877)
T ss_pred hhhhhccchhhccCccccccchhccCCCCcceEEecchheecccHHHH------------hhhhhhhhheecC
Confidence 999984 36899999999999999999 5889999999995
No 26
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-39 Score=305.56 Aligned_cols=238 Identities=37% Similarity=0.627 Sum_probs=198.8
Q ss_pred cccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhc
Q psy2130 24 GLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSE 100 (470)
Q Consensus 24 GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~ 100 (470)
||.| |||||+|| |+|++ .||||+||+..+|+.|+.++...
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~-------------------------------------~q~Da~E~l~~ll~~l~~~~~~~ 43 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS-------------------------------------EQQDAHEFLLFLLDKLHEELKKS 43 (255)
T ss_pred CccccCcchHHhHHHHHHHH-------------------------------------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999 99999999 99987 69999999999999999998754
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccCC----CCCHHHHh
Q psy2130 101 RPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ----NTSITQCL 176 (470)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~----~~sl~~~L 176 (470)
... ........+.+.++|+|.+..+++|..|+..+.....+..++|++|. ..+|+++|
T Consensus 44 ~~~------------------~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~~~~~l~~~l 105 (255)
T cd02257 44 SKR------------------TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVSLEDCL 105 (255)
T ss_pred ccc------------------ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCCCCCcHHHHH
Confidence 322 11123345689999999999999999999888887788888888886 48999999
Q ss_pred ccCCccccccCCCccccCCcc--ccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHH
Q psy2130 177 RGFSSTETLCSDNKFKCDNCA--SYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRV 254 (470)
Q Consensus 177 ~~~~~~e~l~~~~~~~C~~C~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i 254 (470)
+.++.+|.+ ....|..|+ ......
T Consensus 106 ~~~~~~e~~---~~~~~~~c~~~~~~~~~--------------------------------------------------- 131 (255)
T cd02257 106 EKFFKEEIL---EGDNCYKCEKKKKQEAT--------------------------------------------------- 131 (255)
T ss_pred HHhhhhhcc---CCCCcccCCCCccccee---------------------------------------------------
Confidence 999999887 567888887 344444
Q ss_pred hccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCC
Q psy2130 255 LEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKL 334 (470)
Q Consensus 255 ~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~l 334 (470)
++..+.++
T Consensus 132 ------------------------------------------------------------------------~~~~i~~l 139 (255)
T cd02257 132 ------------------------------------------------------------------------KRLKIKKL 139 (255)
T ss_pred ------------------------------------------------------------------------EEEecccC
Confidence 67788999
Q ss_pred CceEEEEeeeeeeeccccccccccceEecCcccccccCCC------CCCCCCcceEEEEEEEeecCCCCCcEEEEEEecC
Q psy2130 335 PMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSD------DAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH 408 (470)
Q Consensus 335 P~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~------~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~ 408 (470)
|++|+|+++||.++.. ....|+...|.+|..+++..+.. ........|+|+|||+|.|.+..+|||++|+|..
T Consensus 140 P~~L~i~l~R~~~~~~-~~~~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~ 218 (255)
T cd02257 140 PPVLIIHLKRFSFNED-GTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDP 218 (255)
T ss_pred CceeEEEeeceeeccc-cccccCCCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCC
Confidence 9999999999998753 34479999999999999877653 2344668999999999999966999999999976
Q ss_pred --CcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130 409 --DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450 (470)
Q Consensus 409 --~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~ 450 (470)
++|++|||..|++++++++.... ..+.+||+|||+
T Consensus 219 ~~~~W~~~nD~~V~~v~~~~~~~~~-------~~~~~~yll~Y~ 255 (255)
T cd02257 219 SDGKWYKFNDDKVTEVSEEEVLEFG-------SLSSSAYILFYE 255 (255)
T ss_pred CCCceEEEeccccEEcCHHHhhhcc-------CCCCceEEEEEC
Confidence 89999999999999998885432 147899999995
No 27
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.9e-38 Score=303.80 Aligned_cols=215 Identities=38% Similarity=0.667 Sum_probs=180.9
Q ss_pred ccCcccCCCcchhHHHHHHHhhchHHHHHHhccc-------cccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHH
Q psy2130 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYK-------AKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITR 297 (470)
Q Consensus 225 ~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~-------~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~ 297 (470)
++||.|.|||||+||+||+|+++|+|++.+.... .........+...++.++..++........+.|..++.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 5899999999999999999999999999999761 122334567999999999999999777889999999999
Q ss_pred HhhccCcCCccccccHHHHHHHHHHHHHh-----------------------------------------hhhhhcCCCc
Q psy2130 298 LRKEKDEFDNYMQQDAHEFLNFLINHINE-----------------------------------------KCMKVKKLPM 336 (470)
Q Consensus 298 l~~~~~~~~~~~QqDa~E~~~~ll~~L~~-----------------------------------------~~~~i~~lP~ 336 (470)
+....+.|..+.|+||+||+..|++.|++ ....+.++|+
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~~~~~~~~P~ 160 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNSQSSISSLPP 160 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCEEEEEEEBBS
T ss_pred ccccccccccccccchhhhhcccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99988889999999999999999999988 1345788999
Q ss_pred eEEEEeeeeeeeccccccccccceEecC-cccccccCCCCCCC---CCcceEEEEEEEeecCCCCCcEEEEEEecCC--c
Q psy2130 337 ILALHLKRFKYMDKMNRHVKVSHRVVFP-LELRLFHLSDDAVN---PDRMYNLVAVVIHCGSGPNRGHYISIVKSHD--F 410 (470)
Q Consensus 337 ~L~i~l~R~~~~~~~~~~~K~~~~v~fp-~~ldl~~~~~~~~~---~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~--~ 410 (470)
+|+|+++||.++...+...|+...|.|| .+||+.++...... ....|+|+|||+|+| ...+|||+||+|+.+ +
T Consensus 161 ~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~~~~~~ 239 (269)
T PF00443_consen 161 ILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG-SADSGHYVAYVRDSDDGK 239 (269)
T ss_dssp EEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-STTSEEEEEEEEETTTTE
T ss_pred eeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccc-ccccceEEEeeccccCCe
Confidence 9999999998887666678999999999 69999988766443 368999999999999 599999999998653 6
Q ss_pred EEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEE
Q psy2130 411 WLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFY 449 (470)
Q Consensus 411 W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY 449 (470)
|++|||+.|+++++++|.+. ...+||||||
T Consensus 240 W~~~dD~~v~~~~~~~v~~~---------~~~~~yll~Y 269 (269)
T PF00443_consen 240 WYKFDDSRVTEVSWEEVIKS---------SNSTAYLLFY 269 (269)
T ss_dssp EEEEETTEEEEESHHHHCCG---------GSTCEEEEEE
T ss_pred EEEeeCCceEECCHHHHhhc---------cCCceEEEeC
Confidence 99999999999999888321 2489999999
No 28
>KOG1870|consensus
Probab=100.00 E-value=2.5e-39 Score=349.59 Aligned_cols=296 Identities=30% Similarity=0.487 Sum_probs=245.2
Q ss_pred CCCCCccccccc-CCchhhhh--hhhccchHHHHHh--------------------------------hhcCCccchhhH
Q psy2130 16 FPPNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQT--------------------------------SLQDKISLGWEC 60 (470)
Q Consensus 16 ~~~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~--------------------------------~~~~~~~~~~~~ 60 (470)
.+...+.+||.| |||||||| |||.+.++++... ..... ....+.
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~-~~v~~~ 318 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNK-SAVAPT 318 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCc-cccCch
Confidence 456678999999 99999999 9999999981111 11111 112222
Q ss_pred HHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCccccc---CCCCCCCCCCCCCCCCCCCCchHHHHhhc
Q psy2130 61 SLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKS---KLSAPDGGGGDNHSSSGFEEPTWVHEIFQ 137 (470)
Q Consensus 61 ~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~i~~~F~ 137 (470)
.+...+. ...++|.|+.|||.+||+.+|+|.||++++...+++.... ............|......+.++|.++|.
T Consensus 319 ~~~~~~~-~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~ 397 (842)
T KOG1870|consen 319 SFRTSLA-SFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFD 397 (842)
T ss_pred hhhhhhh-hccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeec
Confidence 4444444 6778899999999999999999999999987766622111 11111223344577778888899999999
Q ss_pred cccccceeccccCCcccccCCCcccccccC--------------------------------------------------
Q psy2130 138 GILTSETKCLNCETVSSKDEDFFDLQVDIK-------------------------------------------------- 167 (470)
Q Consensus 138 g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~-------------------------------------------------- 167 (470)
|++++.++|+.|+.+++++++|..|+||+|
T Consensus 398 ~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 477 (842)
T KOG1870|consen 398 GTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWE 477 (842)
T ss_pred ceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhh
Confidence 999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy2130 168 -------------------------------------------------------------------------------- 167 (470)
Q Consensus 168 -------------------------------------------------------------------------------- 167 (470)
T Consensus 478 l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~ 557 (842)
T KOG1870|consen 478 LKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSV 557 (842)
T ss_pred cccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeec
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2130 168 -------------------------------------------------------------------------------- 167 (470)
Q Consensus 168 -------------------------------------------------------------------------------- 167 (470)
T Consensus 558 ~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (842)
T KOG1870|consen 558 LSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRF 637 (842)
T ss_pred cCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccccc
Confidence
Q ss_pred --------------------------------------------------------CCCCHHHHhccCCccccccCCCcc
Q psy2130 168 --------------------------------------------------------QNTSITQCLRGFSSTETLCSDNKF 191 (470)
Q Consensus 168 --------------------------------------------------------~~~sl~~~L~~~~~~e~l~~~~~~ 191 (470)
...+|++||..|+.+|.|..++.|
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w 717 (842)
T KOG1870|consen 638 FQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRW 717 (842)
T ss_pred cccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccc
Confidence 157999999999999999999999
Q ss_pred ccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHH
Q psy2130 192 KCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSC 271 (470)
Q Consensus 192 ~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~ 271 (470)
.|+.|.....|.
T Consensus 718 ~C~~Cke~~~A~-------------------------------------------------------------------- 729 (842)
T KOG1870|consen 718 YCPQCKELRQAT-------------------------------------------------------------------- 729 (842)
T ss_pred cChHHHHHHHHh--------------------------------------------------------------------
Confidence 999999999888
Q ss_pred HHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccc
Q psy2130 272 LADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKM 351 (470)
Q Consensus 272 l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~ 351 (470)
|+..++++|++|+|||+||.+.+..
T Consensus 730 -------------------------------------------------------Kk~~lwrlPeiLiihLKrF~~~r~~ 754 (842)
T KOG1870|consen 730 -------------------------------------------------------KKLDLWRLPEILIIHLKRFQYSRES 754 (842)
T ss_pred -------------------------------------------------------hhhhhhhCCceEEEEeecceeechh
Confidence 9999999999999999999998744
Q ss_pred cccccccceEecCc-ccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhh
Q psy2130 352 NRHVKVSHRVVFPL-ELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIE 428 (470)
Q Consensus 352 ~~~~K~~~~v~fp~-~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~ 428 (470)
..|+...|+||. .||+++++..... ..|+|+||++|+|. +.+|||+||.|. +++||.|||+.|.++++++|
T Consensus 755 --~~k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG~-l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i- 828 (842)
T KOG1870|consen 755 --SSKVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYGQ-LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEI- 828 (842)
T ss_pred --hhhhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccCC-cCCcchhhhhhcCCCCceEEeccccCCCCChhhc-
Confidence 389999999998 6888888765432 89999999999999 999999999996 58999999999999999888
Q ss_pred hhcCCCCCCCCCCCcEEEEEEEecC
Q psy2130 429 DFFGLTSDHQKSSETGYILFYQSRD 453 (470)
Q Consensus 429 ~~~g~~~~~~~~~~~aYiLfY~r~~ 453 (470)
.+..||+|||+|++
T Consensus 829 -----------~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 829 -----------DTEAAYVLFYRRLD 842 (842)
T ss_pred -----------ccccceEEEEEecC
Confidence 48999999999975
No 29
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-38 Score=310.47 Aligned_cols=150 Identities=18% Similarity=0.214 Sum_probs=104.2
Q ss_pred cccccc-CCchhhhh--hhhccchHHHHHhhhcCC-----------------ccc------------hhhHHHHHHhhcc
Q psy2130 22 YFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDK-----------------ISL------------GWECSLILELDLC 69 (470)
Q Consensus 22 ~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~-----------------~~~------------~~~~~~~~~l~~~ 69 (470)
|+||.| |||||||| |+|+++|+|...+..-.. ... .....++..|...
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 689999 99999999 999999999444332110 000 0011333333311
Q ss_pred cCCCC--------CCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccc
Q psy2130 70 SSDEF--------DNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILT 141 (470)
Q Consensus 70 ~~~~f--------~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~ 141 (470)
..+.. ....||||+||+..||+.|++++......... + .........++|.++|+|++.
T Consensus 81 ~~~~v~P~~~l~~l~~~QQDa~Ef~~~lld~Le~~lk~~~~~~~~------~-------~~~~~~~~~~~I~~lF~G~~~ 147 (343)
T cd02666 81 NTRSVTPSKELAYLALRQQDVTECIDNVLFQLEVALEPISNAFAG------P-------DTEDDKEQSDLIKRLFSGKTK 147 (343)
T ss_pred CCCccCcHHHHHhccccccchHHHHHHHHHHHHHHhcCccccccC------c-------ccccccchhhhhhHhceeeEE
Confidence 11111 12279999999999999999998643211100 0 001123457899999999999
Q ss_pred cceeccccC---CcccccCCCcccccccCC----------CCCHHHHhccCCcccc
Q psy2130 142 SETKCLNCE---TVSSKDEDFFDLQVDIKQ----------NTSITQCLRGFSSTET 184 (470)
Q Consensus 142 ~~~~C~~C~---~~s~~~~~f~~Lsl~i~~----------~~sl~~~L~~~~~~e~ 184 (470)
+.++|..|+ ..+.+.|+|++|+|+|+. ..+|.+||+.|+..|.
T Consensus 148 ~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~ 203 (343)
T cd02666 148 QQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS 203 (343)
T ss_pred EEEEecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh
Confidence 999999997 789999999999999985 6889999988887665
No 30
>KOG1864|consensus
Probab=100.00 E-value=2.9e-37 Score=316.63 Aligned_cols=307 Identities=48% Similarity=0.770 Sum_probs=247.4
Q ss_pred hhhhhHhhCCCCCC--CCCccccccc-CCchhhh--h--hhhccchHH----------------------------HHHh
Q psy2130 4 ISALEKEIGPDRFP--PNERYFGLVN-GKTCKEK--E--DRIEKSQPF----------------------------WEQT 48 (470)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~~~~GL~N-GNtCy~N--s--Q~L~~~~~f----------------------------~~~~ 48 (470)
.+.+.++.++.... .+.+.-|..| +++|+.| + |.++.+.++ +...
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (587)
T KOG1864|consen 212 SSELLKEKGPTFSYSNANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSI 291 (587)
T ss_pred ccccccccCCccccccccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccch
Confidence 34555666655554 4678899999 9999999 4 777777665 1111
Q ss_pred hhcCCccchh-hHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCC----CCCCC--
Q psy2130 49 SLQDKISLGW-ECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGG----GGDNH-- 121 (470)
Q Consensus 49 ~~~~~~~~~~-~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~----~~~~~-- 121 (470)
..++...... +..++..++ +....|..+.|||||||+.++++.++|-+................++. +..++
T Consensus 292 ~~~~~~~~~i~p~~~~~~~~-~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~ 370 (587)
T KOG1864|consen 292 SSRKKLVGRISPTRFISDLI-KENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNK 370 (587)
T ss_pred hhhcccccccCcchhhhhhh-hcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCcccccccccccc
Confidence 2222211121 227777777 888999999999999999999999999877655333222111001111 11111
Q ss_pred CCCCCCCchHHHHhhccccccceeccccCCcccccCCCcccccccC--CCCCHHHHhccCCccccccCCCccccCCcccc
Q psy2130 122 SSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIK--QNTSITQCLRGFSSTETLCSDNKFKCDNCASY 199 (470)
Q Consensus 122 ~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~--~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~ 199 (470)
........+++.++|.|++..+..|..|++++.+.+.|.|++++++ +..++..||+.|..+|.+.|++.|.|+.|..+
T Consensus 371 ~~~~~~~~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~ 450 (587)
T KOG1864|consen 371 GHHKSLRENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSL 450 (587)
T ss_pred ccccccchhHHHHhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCch
Confidence 1334557789999999999999999999999999999999999999 79999999999999999999999999999999
Q ss_pred ccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHH
Q psy2130 200 QEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNI 279 (470)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l 279 (470)
+.+.
T Consensus 451 qeae---------------------------------------------------------------------------- 454 (587)
T KOG1864|consen 451 QEAE---------------------------------------------------------------------------- 454 (587)
T ss_pred hhHH----------------------------------------------------------------------------
Confidence 9998
Q ss_pred HhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccc
Q psy2130 280 ATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSH 359 (470)
Q Consensus 280 ~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~ 359 (470)
+.+.++++|.+|+|||+||.+........|+..
T Consensus 455 -----------------------------------------------~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~ 487 (587)
T KOG1864|consen 455 -----------------------------------------------RRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLY 487 (587)
T ss_pred -----------------------------------------------HhccccCCcceeeeehhcccccccccccccccc
Confidence 899999999999999999999876677799999
Q ss_pred eEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecCCc-EEEEeCcceeeechhhhhhhcCCC
Q psy2130 360 RVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDF-WLLFDDDVVDKIDQSTIEDFFGLT 434 (470)
Q Consensus 360 ~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~~-W~~~nD~~V~~v~~~~v~~~~g~~ 434 (470)
+|.+|..+.+.....++..+...|.|+|||||.|.+.+.|||+||+|..+. |++|||..|+.++.++|.+..|.+
T Consensus 488 ~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s 563 (587)
T KOG1864|consen 488 RVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSS 563 (587)
T ss_pred ccccccceeeccccccccCccceeeEEEEEEeccCCCCCcceEEEEeeCCCCceecccccccccCcchhhhccCCC
Confidence 999999999987777766667899999999999999999999999998876 999999999999999998887654
No 31
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-36 Score=290.72 Aligned_cols=150 Identities=23% Similarity=0.375 Sum_probs=120.7
Q ss_pred cccccc-CCchhhhh--hhhccchHH----------------------H---HHhhh-cCC-----ccchhhH-HHHHHh
Q psy2130 22 YFGLVN-GKTCKEKE--DRIEKSQPF----------------------W---EQTSL-QDK-----ISLGWEC-SLILEL 66 (470)
Q Consensus 22 ~~GL~N-GNtCy~Ns--Q~L~~~~~f----------------------~---~~~~~-~~~-----~~~~~~~-~~~~~l 66 (470)
++||.| ||+||+|| |+|+....+ + ..+.. ++. +..+..+ .|.+.+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~i 382 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLI 382 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHH
Confidence 899999 99999999 999887665 1 11111 111 1223333 666666
Q ss_pred hcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceec
Q psy2130 67 DLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKC 146 (470)
Q Consensus 67 ~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C 146 (470)
+ ..++.|...+||||||||++||+.|.+-.. .-..+.|.++|...+..++.|
T Consensus 383 g-q~h~eFg~~~QQDA~EFLlfLL~kirk~~~---------------------------S~~~~~It~lf~Fe~e~rlsC 434 (749)
T COG5207 383 G-QDHPEFGKFAQQDAHEFLLFLLEKIRKGER---------------------------SYLIPPITSLFEFEVERRLSC 434 (749)
T ss_pred c-CCchhhhhhhhhhHHHHHHHHHHHHhhccc---------------------------hhcCCCcchhhhhhhcceecc
Confidence 6 999999999999999999999999987321 112334779999999999999
Q ss_pred cccCCcccccCCCcccccccCCC---CCHHHHhccCCccccccCCCccccCCcccccccc
Q psy2130 147 LNCETVSSKDEDFFDLQVDIKQN---TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQ 203 (470)
Q Consensus 147 ~~C~~~s~~~~~f~~Lsl~i~~~---~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~ 203 (470)
..|+.+++++++...+.+++.++ .++.+|++.|+.+..+ +|.|+.|+.+..+.
T Consensus 435 ~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdti----E~~CenCk~K~~a~ 490 (749)
T COG5207 435 SGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTI----EWSCENCKGKKKAS 490 (749)
T ss_pred cccccccccccceEEEEeecccCcchhhHHHHHHheECccce----eeehhhhcCccccc
Confidence 99999999999999999998874 7889999999999996 69999999998888
No 32
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-36 Score=286.38 Aligned_cols=175 Identities=21% Similarity=0.301 Sum_probs=146.4
Q ss_pred HHHhhccccccceecc------ccCCcccccCCCcccccccCC-----CCCHHHHhccCCccccccCCCccccCCccccc
Q psy2130 132 VHEIFQGILTSETKCL------NCETVSSKDEDFFDLQVDIKQ-----NTSITQCLRGFSSTETLCSDNKFKCDNCASYQ 200 (470)
Q Consensus 132 i~~~F~g~~~~~~~C~------~C~~~s~~~~~f~~Lsl~i~~-----~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~ 200 (470)
+.+.|.|.+.+++.|. .|++++.+.++|.+|+|++|. ..++++||+.|+.+|.. +++.|+.|+.+.
T Consensus 68 ~iq~F~~fll~~i~~~~~~~~~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~ 144 (268)
T cd02672 68 LIQNFTRFLLETISQDQLGTPFSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKV---TKAWCDTCCKYQ 144 (268)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceeeccccceeeeeecCccccccCCCHHHHHHHHhhhhhc---ccccccccCccc
Confidence 3355666666666665 899999999999999999994 57999999999999875 789999999998
Q ss_pred cccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHH
Q psy2130 201 EAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIA 280 (470)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~ 280 (470)
.+.
T Consensus 145 ~a~----------------------------------------------------------------------------- 147 (268)
T cd02672 145 PLE----------------------------------------------------------------------------- 147 (268)
T ss_pred ccE-----------------------------------------------------------------------------
Confidence 888
Q ss_pred hCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCc----eEEEEeeeeeeeccc-----
Q psy2130 281 THKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPM----ILALHLKRFKYMDKM----- 351 (470)
Q Consensus 281 ~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~----~L~i~l~R~~~~~~~----- 351 (470)
++..|.++|+ +|+|+++||......
T Consensus 148 ----------------------------------------------k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~ 181 (268)
T cd02672 148 ----------------------------------------------QTTSIRHLPDILLLVLVINLSVTNGEFDDINVVL 181 (268)
T ss_pred ----------------------------------------------EEEEeecCCCcccceEEEEEeccChhhcccCcce
Confidence 9999999999 999999999864321
Q ss_pred cccccccceEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEec------CCcEEEEeCcceeeechh
Q psy2130 352 NRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS------HDFWLLFDDDVVDKIDQS 425 (470)
Q Consensus 352 ~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~------~~~W~~~nD~~V~~v~~~ 425 (470)
....|+...|.||+.+++......+......|+|+|||+|.|.+..+|||+|++|. .++||+|||..|++|++
T Consensus 182 ~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~- 260 (268)
T cd02672 182 PSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE- 260 (268)
T ss_pred eEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc-
Confidence 12357778999998877665555555566899999999999986699999999997 57899999999999754
Q ss_pred hhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130 426 TIEDFFGLTSDHQKSSETGYILFYQ 450 (470)
Q Consensus 426 ~v~~~~g~~~~~~~~~~~aYiLfY~ 450 (470)
.||||||+
T Consensus 261 -----------------~aYiLfY~ 268 (268)
T cd02672 261 -----------------LAYILLYQ 268 (268)
T ss_pred -----------------hheeeecC
Confidence 79999995
No 33
>KOG1863|consensus
Probab=100.00 E-value=1.8e-34 Score=319.28 Aligned_cols=286 Identities=25% Similarity=0.442 Sum_probs=236.3
Q ss_pred Ccc-ccccc-CCchhhhh--hhhccchHH---------------------------HHHhhhcCCccchhhHHHHHHhhc
Q psy2130 20 ERY-FGLVN-GKTCKEKE--DRIEKSQPF---------------------------WEQTSLQDKISLGWECSLILELDL 68 (470)
Q Consensus 20 ~~~-~GL~N-GNtCy~Ns--Q~L~~~~~f---------------------------~~~~~~~~~~~~~~~~~~~~~l~~ 68 (470)
.+. +||.| |||||||| |+||+++.| |..+..++. +.....++++.+.|
T Consensus 167 tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~-k~Vdt~~~~~~~~~ 245 (1093)
T KOG1863|consen 167 TGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKR-KYVDTSELTKSLGW 245 (1093)
T ss_pred CCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCC-CCcCchhhhhhhhc
Confidence 344 99999 99999999 999999999 333444443 45555577777775
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccc
Q psy2130 69 CSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLN 148 (470)
Q Consensus 69 ~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~ 148 (470)
.. .....|||++||++.|+|.|++.+.... ....|.++|.|.+.+.+.|..
T Consensus 246 ~~---~~~~~QqDvqEf~~~l~d~LE~~~~~~~--------------------------~~~~l~~lf~g~~~~~i~c~~ 296 (1093)
T KOG1863|consen 246 DS---NDSFEQQDVQEFLTKLLDWLEDSMIDAK--------------------------VENTLQDLFTGKMKSVIKCID 296 (1093)
T ss_pred cc---ccHHhhhhHHHHHHHHHHHHHhhccchh--------------------------hhhhhhhhhcCCcceEEEEEe
Confidence 33 4567899999999999999999764221 255688999999999999999
Q ss_pred cCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCc
Q psy2130 149 CETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGL 228 (470)
Q Consensus 149 C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL 228 (470)
|+..+.+.+.|+++.|++....++.++|..|+..|.++|+++ .|..|...+.+.
T Consensus 297 ~~~~s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~------------------------- 350 (1093)
T KOG1863|consen 297 VDFESSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAK------------------------- 350 (1093)
T ss_pred eeeeccccccccCccccccchhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhh-------------------------
Confidence 999999999999999999999999999999999999999998 889998888887
Q ss_pred ccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCcc
Q psy2130 229 VNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNY 308 (470)
Q Consensus 229 ~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~ 308 (470)
T Consensus 351 -------------------------------------------------------------------------------- 350 (1093)
T KOG1863|consen 351 -------------------------------------------------------------------------------- 350 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCC----CCCCCcceE
Q psy2130 309 MQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDD----AVNPDRMYN 384 (470)
Q Consensus 309 ~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~----~~~~~~~Y~ 384 (470)
+...+..+|++|.|+|+||.++...+...|+....+||..|++.++... .......|+
T Consensus 351 ------------------k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~ 412 (1093)
T KOG1863|consen 351 ------------------KGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYS 412 (1093)
T ss_pred ------------------cceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccccchhhhhccceec
Confidence 7788899999999999999999888888999999999999999888652 122225999
Q ss_pred EEEEEEeecCCCCCcEEEEEEe--cCCcEEEEeCcceeeechhhh-hhhcCCCCCCC---CCCCcEEEEEEEecCCCccc
Q psy2130 385 LVAVVIHCGSGPNRGHYISIVK--SHDFWLLFDDDVVDKIDQSTI-EDFFGLTSDHQ---KSSETGYILFYQSRDSTDAR 458 (470)
Q Consensus 385 L~avV~H~G~~~~~GHY~a~vr--~~~~W~~~nD~~V~~v~~~~v-~~~~g~~~~~~---~~~~~aYiLfY~r~~~~~~~ 458 (470)
|+||.+|.|. .++|||++|++ ..++|++|||..|..++..++ +..+|+..... .....||+|+|.|++..+..
T Consensus 413 l~~v~vh~g~-~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~~~ 491 (1093)
T KOG1863|consen 413 LHAVLVHSGD-AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCESKI 491 (1093)
T ss_pred cchhhccccc-ccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcHHhh
Confidence 9999999776 99999999999 468999999999999986655 45777643210 11223899999999877655
Q ss_pred cC
Q psy2130 459 TM 460 (470)
Q Consensus 459 ~~ 460 (470)
..
T Consensus 492 ~~ 493 (1093)
T KOG1863|consen 492 LK 493 (1093)
T ss_pred hc
Confidence 43
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=2.7e-31 Score=246.17 Aligned_cols=111 Identities=25% Similarity=0.424 Sum_probs=89.5
Q ss_pred cCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC----------------------CCCCcceEEEEEE
Q psy2130 332 KKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA----------------------VNPDRMYNLVAVV 389 (470)
Q Consensus 332 ~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~----------------------~~~~~~Y~L~avV 389 (470)
.++|++|+|||+||.++. +...|+...|.||..|||.++.... ......|+|+|||
T Consensus 96 ~~lP~vLiIhLKRF~~~~--~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi 173 (241)
T cd02670 96 AKAPSCLIICLKRYGKTE--GKAQKMFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAV 173 (241)
T ss_pred hhCCCeEEEEEEccccCC--CcceeCCcEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEE
Confidence 489999999999999976 4458999999999999999886442 2345689999999
Q ss_pred EeecCCCCCcEEEEEEecC-------------CcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEE
Q psy2130 390 IHCGSGPNRGHYISIVKSH-------------DFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450 (470)
Q Consensus 390 ~H~G~~~~~GHY~a~vr~~-------------~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~ 450 (470)
+|.|.+..+|||+||+|.. +.|++|||..|+++....... .......+||||||+
T Consensus 174 ~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~~~~~~------~~~~~~~~aYmLFYq 241 (241)
T cd02670 174 CHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNI------PAARLLEDPYMLFYQ 241 (241)
T ss_pred EeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCccccccccccccc------chhcccCCceEEEeC
Confidence 9999888999999999964 689999999988875432110 001257899999996
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.97 E-value=6.7e-31 Score=255.38 Aligned_cols=254 Identities=20% Similarity=0.321 Sum_probs=208.0
Q ss_pred ccccc-CCchhhhh--hhhccchHH-----------------------HHHhh-hcCCccchhhHHHHHHhhcccCCCCC
Q psy2130 23 FGLVN-GKTCKEKE--DRIEKSQPF-----------------------WEQTS-LQDKISLGWECSLILELDLCSSDEFD 75 (470)
Q Consensus 23 ~GL~N-GNtCy~Ns--Q~L~~~~~f-----------------------~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~f~ 75 (470)
+||.| +++||+|| |+|++++++ |+++. ..+. ......+|+++++ .......
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~~c~~e~cL~cELgfLf~ml~~~~~g-~~cq~sNflr~l~-~~~~a~~ 78 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHLECPKEFCLLCELGFLFDMLDSKAKG-INCQASNFLRALS-WIPEAAA 78 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCcCCCccccHHHHHHHHHHHhhhhcCC-CcChHHHHHHHHh-cCHHHHh
Confidence 59999 99999999 999999998 44444 3333 6666779999999 5555566
Q ss_pred CcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCcccc
Q psy2130 76 NYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSK 155 (470)
Q Consensus 76 ~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~ 155 (470)
.+.|+|+++|+++||+.|+.|+.......... .........+.|.++|+.......+|..|+..+.+
T Consensus 79 l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~ 145 (295)
T PF13423_consen 79 LGLQQDIQSLNRFLLEQLSMELLTFKPDIFHT-------------SENSSSSPESSISQLFGTSFETTIRCTSCGHESVK 145 (295)
T ss_pred cchhHHHHHHHHHHHHHHhHHHHhcCcccccc-------------cccccCCCcchHHHHhCcceeeeecccccCCeEEe
Confidence 67799999999999999999997665432110 01112345667999999999999999999999999
Q ss_pred cCCCcccccccCC---CCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCC
Q psy2130 156 DEDFFDLQVDIKQ---NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFG 232 (470)
Q Consensus 156 ~~~f~~Lsl~i~~---~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~g 232 (470)
.+....+.|..|. ..++.++|+.++..|.. ....|++|+++....
T Consensus 146 ~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~---~~a~C~~C~~~~~~~----------------------------- 193 (295)
T PF13423_consen 146 ESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQ---TRAWCEKCNKYQPTE----------------------------- 193 (295)
T ss_pred ecceeeeeccCCCCCccchHHHHHHHHHhhccc---cccccccccccccee-----------------------------
Confidence 9999899888886 68999999999988887 568999999987776
Q ss_pred CcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCcccccc
Q psy2130 233 NTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQD 312 (470)
Q Consensus 233 ntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqD 312 (470)
T Consensus 194 -------------------------------------------------------------------------------- 193 (295)
T PF13423_consen 194 -------------------------------------------------------------------------------- 193 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-------CCCCcceEE
Q psy2130 313 AHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA-------VNPDRMYNL 385 (470)
Q Consensus 313 a~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~-------~~~~~~Y~L 385 (470)
.+..+.++|+||.|.+++..... .+..|....+.+|..+++..+..+. .....+|+|
T Consensus 194 --------------~~r~i~~LPpVL~In~~~~~~~~--~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L 257 (295)
T PF13423_consen 194 --------------QRRTIRSLPPVLSINLNRYSEEE--FWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYEL 257 (295)
T ss_pred --------------eeeeccCCCcEEEEEccCCCccc--ccccccCCceecceeeeccccccccccccccCCCCceEEEE
Confidence 77888999999999999998872 3357888899999998887766432 446689999
Q ss_pred EEEEEeecCCCCCcEEEEEEecC----CcEEEEeCcce
Q psy2130 386 VAVVIHCGSGPNRGHYISIVKSH----DFWLLFDDDVV 419 (470)
Q Consensus 386 ~avV~H~G~~~~~GHY~a~vr~~----~~W~~~nD~~V 419 (470)
.|+|||.|.+..+|||||+||.. ++||+|||..|
T Consensus 258 ~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 258 RSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred EEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 99999999999999999999964 79999999754
No 36
>KOG1871|consensus
Probab=99.96 E-value=1.9e-29 Score=237.17 Aligned_cols=243 Identities=26% Similarity=0.353 Sum_probs=183.9
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCC---------------C-C-CCC------------CCCCCCC
Q psy2130 74 FDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSA---------------P-D-GGG------------GDNHSSS 124 (470)
Q Consensus 74 f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~---------------~-~-~~~------------~~~~~~~ 124 (470)
...|.|.||.|||.++||.||||+.+..+.......... + + +.. .......
T Consensus 139 ~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~ 218 (420)
T KOG1871|consen 139 LQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRA 218 (420)
T ss_pred ccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccccccccccchhhcccccCchhhhcCCcccCccCCC
Confidence 356899999999999999999998765433221111100 0 0 000 0011223
Q ss_pred CCCCchHHHHhhccccccceeccccCCcccccCCCccccccc--CCCCCHHHHhccCCccccccCCCccccCCccccccc
Q psy2130 125 GFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDI--KQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEA 202 (470)
Q Consensus 125 ~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i--~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~ 202 (470)
.....++|+++|+|++++.+.-++ .++|...+||.-|.|+| .+..++++++..+...|.+. .|.-. -+....+
T Consensus 219 ~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i~sv~~ales~~~re~lp---~~st~-s~~eV~~ 293 (420)
T KOG1871|consen 219 DSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKIHSVQDALESLVARESLP---GYSTK-SGQEVEA 293 (420)
T ss_pred CCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeeccccCCHHHHhhccChhhccc---ceecC-CCCeech
Confidence 344567899999999999988776 55679999999999999 56789999999999999873 24322 3444444
Q ss_pred cCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhC
Q psy2130 203 QGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATH 282 (470)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~ 282 (470)
.
T Consensus 294 s------------------------------------------------------------------------------- 294 (420)
T KOG1871|consen 294 S------------------------------------------------------------------------------- 294 (420)
T ss_pred h-------------------------------------------------------------------------------
Confidence 4
Q ss_pred CCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEe
Q psy2130 283 KKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVV 362 (470)
Q Consensus 283 ~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~ 362 (470)
++..+.++|++|++|++||.+.. .++..|+.+.++
T Consensus 295 --------------------------------------------~q~~leklp~vlilhlkrF~ye~-tgg~~k~~K~i~ 329 (420)
T KOG1871|consen 295 --------------------------------------------SQTTLEKLPPVLILHLKRFVYEK-TGGARKLGKKIE 329 (420)
T ss_pred --------------------------------------------hhhhHhhcchhhhhhhhHHHHHh-ccchhhhchhhh
Confidence 77888999999999999999874 466789999999
Q ss_pred cCcccccccCCC------CCCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCC
Q psy2130 363 FPLELRLFHLSD------DAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLT 434 (470)
Q Consensus 363 fp~~ldl~~~~~------~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~ 434 (470)
+|-.|.+...+- ........|+|.+||.|+|.+++.|||..-+.+ .+.|+.+||+.|..+..++|+...
T Consensus 330 ~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t--- 406 (420)
T KOG1871|consen 330 YPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVT--- 406 (420)
T ss_pred ccceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhcccc---
Confidence 998876643221 112345789999999999999999999999986 479999999999999999997643
Q ss_pred CCCCCCCCcEEEEEEEecC
Q psy2130 435 SDHQKSSETGYILFYQSRD 453 (470)
Q Consensus 435 ~~~~~~~~~aYiLfY~r~~ 453 (470)
...+||+|+|.|.+
T Consensus 407 -----~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 407 -----GSRTPYLLYYIEAD 420 (420)
T ss_pred -----CccchheeEeeecC
Confidence 47899999999864
No 37
>KOG1872|consensus
Probab=99.94 E-value=4.3e-27 Score=227.16 Aligned_cols=220 Identities=30% Similarity=0.448 Sum_probs=187.7
Q ss_pred ccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccC-----hHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHh
Q psy2130 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKN-----KETLLSCLADLFHNIATHKKKVGSIAPKKFITRLR 299 (470)
Q Consensus 225 ~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~-----~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~ 299 (470)
++|+.|+|||||||+.+|+|-..|+++..+..+....... ...+..+++.+|+.+... ..+.|..+..+++
T Consensus 105 p~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~----~~v~pi~llqtl~ 180 (473)
T KOG1872|consen 105 PVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK----GAVAPINLLQTLS 180 (473)
T ss_pred CccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc----CCcchHHHHHHHH
Confidence 3499999999999999999999999999988776433222 466777889999988876 6889999999999
Q ss_pred hccCcCCc------cccccHHHHHHHHHHHHHh-----------------------------------------------
Q psy2130 300 KEKDEFDN------YMQQDAHEFLNFLINHINE----------------------------------------------- 326 (470)
Q Consensus 300 ~~~~~~~~------~~QqDa~E~~~~ll~~L~~----------------------------------------------- 326 (470)
+..+.|.- ..||||.|++..++..++.
T Consensus 181 ~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L 260 (473)
T KOG1872|consen 181 SQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQL 260 (473)
T ss_pred HHhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhccccccceeeccCccccccccccccccc
Confidence 98888864 8899999999999888777
Q ss_pred -------------------------------------hhhhhcCCCceEEEEeeeeeeeccccccccccceEecCccccc
Q psy2130 327 -------------------------------------KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRL 369 (470)
Q Consensus 327 -------------------------------------~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl 369 (470)
+...|.+||.+|+++..||.+....+...|+-+.|.||..||.
T Consensus 261 ~c~i~~~~~~~k~Gl~~~~~e~~~K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~ 340 (473)
T KOG1872|consen 261 KCIINKTVHDMRFGLKSGLSEEIQKISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQ 340 (473)
T ss_pred ceEEeeeechhhhhhhhhhhhhhhccCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhH
Confidence 6667999999999999999999888888999999999999987
Q ss_pred ccCCCCC--------------------------------------------------CCCCcceEEEEEEEeecCCCCCc
Q psy2130 370 FHLSDDA--------------------------------------------------VNPDRMYNLVAVVIHCGSGPNRG 399 (470)
Q Consensus 370 ~~~~~~~--------------------------------------------------~~~~~~Y~L~avV~H~G~~~~~G 399 (470)
...+... ++....|+|+|||.|.|.+..+|
T Consensus 341 ~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sg 420 (473)
T KOG1872|consen 341 QDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSG 420 (473)
T ss_pred HHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEeeeccccccCCC
Confidence 5543211 12257799999999999999999
Q ss_pred EEEEEEec-CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEecC
Q psy2130 400 HYISIVKS-HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRD 453 (470)
Q Consensus 400 HY~a~vr~-~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~ 453 (470)
||++++|. .+.|+.|||..|.-+..+++..+.|+. .+..||||+|+-+.
T Consensus 421 hy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsggg-----d~~~ayvllyk~~~ 470 (473)
T KOG1872|consen 421 HYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGG-----DWHSAYVLLYKARV 470 (473)
T ss_pred cceEEEeccCCceeeccccccccccccceeeecCCC-----ccchhhheeecccc
Confidence 99999996 479999999999999999998888774 48899999998554
No 38
>KOG2026|consensus
Probab=99.87 E-value=1.6e-22 Score=189.68 Aligned_cols=247 Identities=26% Similarity=0.401 Sum_probs=203.3
Q ss_pred CCccccCCccccccccCCCcccccccc-----------------------------------------------------
Q psy2130 188 DNKFKCDNCASYQEAQGPNISALEKEI----------------------------------------------------- 214 (470)
Q Consensus 188 ~~~~~C~~C~~~~~~~~~~~~~~~~~~----------------------------------------------------- 214 (470)
.+.|.|..|+.+-++++.+|+++.+..
T Consensus 39 LnvyAclvcg~y~qgr~~kS~A~~h~l~~ghhvf~nl~telkfyvlpe~~ei~d~s~~~ikhslkptftr~~cp~lD~~n 118 (442)
T KOG2026|consen 39 LNVYACLVCGKYFQGRGEKSHAYTHSLEEGHHVFLNLSTELKFYVLPENYEIDDPSLGDIKHSLKPTFTKTDCPNLDKVN 118 (442)
T ss_pred cceeeeeeeCchhhCcCccccchhccccccccceeccccceeEEecchhccccCchhhhhhccccceeehhhcccccccc
Confidence 378999999999999999998887711
Q ss_pred -----CCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCcc
Q psy2130 215 -----GPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSI 289 (470)
Q Consensus 215 -----~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~ 289 (470)
..+..++-.|++||.|+.++-|.|+++|+|.+.+++|++++.-.. -.+....+...|..+++++|........+
T Consensus 119 r~~~raLd~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n-~~d~~~~lv~rl~~l~rklw~~r~fk~hv 197 (442)
T KOG2026|consen 119 RKLSRALDGSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN-YFDNLTELVQRLGELIRKLWNPRNFKGHV 197 (442)
T ss_pred hhhhhhhcCCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc-ccchhHHHHHHHHHHHHHhcChhhhcccC
Confidence 011112245999999999999999999999999999999987644 34456778889999999999999999999
Q ss_pred ChHHHHHHHhh-ccCcCCccccccHHHHHHHHHHHHHh------------------------------------------
Q psy2130 290 APKKFITRLRK-EKDEFDNYMQQDAHEFLNFLINHINE------------------------------------------ 326 (470)
Q Consensus 290 ~p~~~~~~l~~-~~~~~~~~~QqDa~E~~~~ll~~L~~------------------------------------------ 326 (470)
+|.+++++... ..+.|..++|.|+.||+.||+++||.
T Consensus 198 Sphe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~ 277 (442)
T KOG2026|consen 198 SPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKKASSIIHKSFQGEVRIVKEKQGEASENENKEISVMP 277 (442)
T ss_pred CHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCCchhHhhHhhcceEEeeeeccccccccccceEEEEe
Confidence 99999998866 77889999999999999999999999
Q ss_pred -------------------------------------------------hhhhhcCCCceEEEEeeeeeeeccccccccc
Q psy2130 327 -------------------------------------------------KCMKVKKLPMILALHLKRFKYMDKMNRHVKV 357 (470)
Q Consensus 327 -------------------------------------------------~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~ 357 (470)
++..+.++|++|++|++||.-+. .-..|+
T Consensus 278 Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e~~~~~~~~rf~l~k~P~ylifh~~rF~kNn--~f~ekN 355 (442)
T KOG2026|consen 278 FLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTEVVTPKLAMRFRLTKLPRYLIFHMKRFKKNN--FFKEKN 355 (442)
T ss_pred eEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeeeecchhhhhheeeecCCceEEEEeeeccccC--cccccC
Confidence 45578899999999999998765 334799
Q ss_pred cceEecC-cccccccCCCC---CCCCCcceEEEEEEEeecCCCCCcEEEEEEecC--CcEEEEeCcceeeechhhhhhhc
Q psy2130 358 SHRVVFP-LELRLFHLSDD---AVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH--DFWLLFDDDVVDKIDQSTIEDFF 431 (470)
Q Consensus 358 ~~~v~fp-~~ldl~~~~~~---~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~--~~W~~~nD~~V~~v~~~~v~~~~ 431 (470)
.+.++|| ..+++.+..+. .......|.|.|-++|- ..-|||..+++++ ++||.++|-.|++...+-|
T Consensus 356 pTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi---- 428 (442)
T KOG2026|consen 356 PTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMI---- 428 (442)
T ss_pred CceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEEEEeCCCcceEEecccchhhhhhHHH----
Confidence 9999999 45665544332 12233789999999996 4689999999964 7999999999999888766
Q ss_pred CCCCCCCCCCCcEEEEEEEec
Q psy2130 432 GLTSDHQKSSETGYILFYQSR 452 (470)
Q Consensus 432 g~~~~~~~~~~~aYiLfY~r~ 452 (470)
.-+.+||.+|++.
T Consensus 429 --------~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 429 --------FLKESFIQIWEKQ 441 (442)
T ss_pred --------HHHHHHHHHHhcc
Confidence 3568888888875
No 39
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.75 E-value=8e-18 Score=171.93 Aligned_cols=108 Identities=31% Similarity=0.509 Sum_probs=92.4
Q ss_pred CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc--ccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHH
Q psy2130 220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN--KKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITR 297 (470)
Q Consensus 220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~ 297 (470)
+..+|++||.|+||||||||+||+|+++|+||++++...... .....++...+..++++++........++|.+++.+
T Consensus 114 ~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~ 193 (440)
T cd02669 114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQA 193 (440)
T ss_pred CccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHH
Confidence 345699999999999999999999999999999999755332 124557899999999999987665678999999999
Q ss_pred Hhhc-cCcCCccccccHHHHHHHHHHHHHhh
Q psy2130 298 LRKE-KDEFDNYMQQDAHEFLNFLINHINEK 327 (470)
Q Consensus 298 l~~~-~~~~~~~~QqDa~E~~~~ll~~L~~~ 327 (470)
+... ...|..+.||||+||+.+||+.|++.
T Consensus 194 l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~ 224 (440)
T cd02669 194 VSKVSKKKFSITEQSDPVEFLSWLLNTLHKD 224 (440)
T ss_pred HHhhcccccCCcccCCHHHHHHHHHHHHHHH
Confidence 9875 46788999999999999999999963
No 40
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.65 E-value=3.4e-16 Score=153.63 Aligned_cols=101 Identities=33% Similarity=0.454 Sum_probs=86.4
Q ss_pred CcccCCCcchhHHHHHHHhhchHHHHHHhcccc----ccccChHHHHHHHHHHHHHHHhCCCC------------CCccC
Q psy2130 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKA----KNKKNKETLLSCLADLFHNIATHKKK------------VGSIA 290 (470)
Q Consensus 227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~----~~~~~~~~l~~~l~~l~~~l~~~~~~------------~~~~~ 290 (470)
||.|+||||||||+||+|+++|+||++++.... ....+...+..+|.+++..++..... ...+.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 899999999999999999999999999976332 22234567889999999998765432 35789
Q ss_pred hHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhh
Q psy2130 291 PKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK 327 (470)
Q Consensus 291 p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~ 327 (470)
|..|+.+++...+.|..+.||||+||+..|++.|++.
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~ 117 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRE 117 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999964
No 41
>KOG1275|consensus
Probab=99.63 E-value=2.6e-15 Score=154.69 Aligned_cols=286 Identities=16% Similarity=0.187 Sum_probs=178.7
Q ss_pred CCccccccc-CCchhhhh--hhhccchHH----------------------HHHhhhcCCccchhhHHHHHHhhcccCCC
Q psy2130 19 NERYFGLVN-GKTCKEKE--DRIEKSQPF----------------------WEQTSLQDKISLGWECSLILELDLCSSDE 73 (470)
Q Consensus 19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f----------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 73 (470)
.+.+.||.- +-+-|.|| |.|+++|++ |.++..+.. ..+...+|+++++ .....
T Consensus 496 qT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C~~e~CL~CELGFLF~Ml~~S~G-~~Cqa~NFlraf~-t~~~a 573 (1118)
T KOG1275|consen 496 QTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHICTKEFCLLCELGFLFTMLDSSTG-DPCQANNFLRAFR-TNPEA 573 (1118)
T ss_pred cceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCccchhHHHHHHHHHHHHHHhhhcC-CccchhHHHHHHh-hChHh
Confidence 467899999 99999999 999999999 333333333 5666669999988 32221
Q ss_pred CCCc----------------ccccHHHHHHHHHHHHHHHHHh-cCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhh
Q psy2130 74 FDNY----------------MQQDAHEFLNFLINHINEVILS-ERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIF 136 (470)
Q Consensus 74 f~~~----------------~QqDA~Efl~~LLd~L~ee~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F 136 (470)
-..+ .-|||.-|.....+...+ +.. .+-+.+... . ...........+.+.|
T Consensus 574 ~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d-~~~~~~~~~s~~~----~-------~~~~~vn~~~~l~q~F 641 (1118)
T KOG1275|consen 574 SALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLD-CQDCRGLQQSESV----D-------GESFKVNYAPVLQQSF 641 (1118)
T ss_pred hhhcccccchhhccccchHHHhhhhhhccchhhhhhhh-HHHhhhhhhhhcc----c-------CceeeecchhHHHHHh
Confidence 1110 122333222222211111 100 000000000 0 0001122345789999
Q ss_pred ccccccceeccccCCcccccCCCcccccccCCCCCHHHHhcc-CC------ccccccCCCccccCCccccccccCCCccc
Q psy2130 137 QGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRG-FS------STETLCSDNKFKCDNCASYQEAQGPNISA 209 (470)
Q Consensus 137 ~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~-~~------~~e~l~~~~~~~C~~C~~~~~~~~~~~~~ 209 (470)
+-....+..|..|+..+.+......+.+..|. .++.+-++. +. +.+.+....+..|+.|.+.....
T Consensus 642 ~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~-~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~~C~k~ep~~------ 714 (1118)
T KOG1275|consen 642 CQEIEKSLRCGECGDEKQKSKSLLRKVLSYPN-VLLIDTLAKSNNFVEILKRSLSLFKNKQAWCETCTKPEPTS------ 714 (1118)
T ss_pred hhHHHHhhhcccccchhhhhhhhhheeecCCC-ccchhhcccccchHHHhhhhhhcccccccccccccCCCCcc------
Confidence 99999999999999998777777777777774 233222221 10 11222233457899999987666
Q ss_pred cccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCcc
Q psy2130 210 LEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSI 289 (470)
Q Consensus 210 ~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~ 289 (470)
T Consensus 715 -------------------------------------------------------------------------------- 714 (1118)
T KOG1275|consen 715 -------------------------------------------------------------------------------- 714 (1118)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeecc--ccccccccceEecCccc
Q psy2130 290 APKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDK--MNRHVKVSHRVVFPLEL 367 (470)
Q Consensus 290 ~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~--~~~~~K~~~~v~fp~~l 367 (470)
.+..+..+|.+|.|...-+..... ..+..|.-..|.+|+++
T Consensus 715 -------------------------------------q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~ 757 (1118)
T KOG1275|consen 715 -------------------------------------QKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWF 757 (1118)
T ss_pred -------------------------------------cccccccCcceeeeeeeccchhhhhhHHHhhccccccccchhe
Confidence 666677888888777665543211 11113445566777766
Q ss_pred ccccCCC------------------CCCCCCcceEEEEEEEeecCCCCCcEEEEEEec----------CCcEEEEeCcce
Q psy2130 368 RLFHLSD------------------DAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS----------HDFWLLFDDDVV 419 (470)
Q Consensus 368 dl~~~~~------------------~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~----------~~~W~~~nD~~V 419 (470)
.+..... .....-.+|+|.|+|+|.|.+.+.+|+|++|+. +.+||.|||--|
T Consensus 758 ~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV 837 (1118)
T KOG1275|consen 758 HMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLV 837 (1118)
T ss_pred eEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceee
Confidence 5533211 112233789999999999998899999999983 259999999999
Q ss_pred eeechhhhhhhcCCCCCCCCCCCcEEEEEE
Q psy2130 420 DKIDQSTIEDFFGLTSDHQKSSETGYILFY 449 (470)
Q Consensus 420 ~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY 449 (470)
.+|++++...+-| .|+.|-||+|
T Consensus 838 ~~ite~EAl~~~~-------~WKvP~Il~Y 860 (1118)
T KOG1275|consen 838 SEITEEEALHFDG-------PWKVPAILYY 860 (1118)
T ss_pred eeCChHHheEecc-------CccCcEEEEE
Confidence 9999987765554 5999999999
No 42
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.62 E-value=1.5e-15 Score=148.72 Aligned_cols=98 Identities=35% Similarity=0.610 Sum_probs=85.4
Q ss_pred CcccCCCcchhHHHHHHHhhchHHHHHHhcccccc---ccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccC
Q psy2130 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN---KKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKD 303 (470)
Q Consensus 227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~---~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~ 303 (470)
||.|+||||||||+||+|+++|+|++.++...... ......+..+|++|+..|+.... .+.|..++..++...+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~---~i~p~~~~~~l~~~~~ 77 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQE---PVPPIEFLQLLRMAFP 77 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCC---cCCcHHHHHHHHHHCc
Confidence 89999999999999999999999999999876542 33467899999999999987543 7899999999999888
Q ss_pred cCC------ccccccHHHHHHHHHHHHHhh
Q psy2130 304 EFD------NYMQQDAHEFLNFLINHINEK 327 (470)
Q Consensus 304 ~~~------~~~QqDa~E~~~~ll~~L~~~ 327 (470)
.|. .++||||+||+..|++.|++.
T Consensus 78 ~f~~~~~~~~~~QqDA~EFl~~lld~L~~~ 107 (305)
T cd02657 78 QFAEKQNQGGYAQQDAEECWSQLLSVLSQK 107 (305)
T ss_pred CcccccCCCCccccCHHHHHHHHHHHHHHH
Confidence 884 448999999999999999864
No 43
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.61 E-value=1.7e-15 Score=148.72 Aligned_cols=208 Identities=25% Similarity=0.389 Sum_probs=141.6
Q ss_pred ccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccc--------------c--------ChHHHHHHHHHHHHHHHhC
Q psy2130 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNK--------------K--------NKETLLSCLADLFHNIATH 282 (470)
Q Consensus 225 ~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~--------------~--------~~~~l~~~l~~l~~~l~~~ 282 (470)
++||.|+||||||||+||+|+++|+||++++.++.... . ....+..+|+.||..|+..
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999998762211 0 1236899999999999965
Q ss_pred CCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcC----------------CCceEEEEeeeee
Q psy2130 283 KKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKK----------------LPMILALHLKRFK 346 (470)
Q Consensus 283 ~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~----------------lP~~L~i~l~R~~ 346 (470)
.. ..+.|..++..++. .||||+||+..+++.|+........ +..++...++...
T Consensus 81 ~~--~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i 150 (343)
T cd02666 81 NT--RSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQL 150 (343)
T ss_pred CC--CccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEE
Confidence 53 47999998887653 8999999999999999862211110 1111222222111
Q ss_pred eeccc----ccccccc---------------------------------------------------ceEecCccccccc
Q psy2130 347 YMDKM----NRHVKVS---------------------------------------------------HRVVFPLELRLFH 371 (470)
Q Consensus 347 ~~~~~----~~~~K~~---------------------------------------------------~~v~fp~~ldl~~ 371 (470)
..... ....+.. ..+.|++.+.+.+
T Consensus 151 ~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~~~~~P~vl~~qlq~~~~~~~~~~~~dr 230 (343)
T cd02666 151 VPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDSLTKLPQRSQVQAQLAQPLQRELISMDR 230 (343)
T ss_pred EecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhhhccCCHHHHHHHhhcccccchheeecc
Confidence 10000 0000000 1122333333322
Q ss_pred CCCCC---------------------------------------CCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCc
Q psy2130 372 LSDDA---------------------------------------VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDF 410 (470)
Q Consensus 372 ~~~~~---------------------------------------~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~ 410 (470)
+.-.. ......|+|+|||+|.|. .++|||++|+|+ ++.
T Consensus 231 y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~ 309 (343)
T cd02666 231 YELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHRGE-ASSGHYWVYIKDFEENV 309 (343)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEeecC-CCCCeEEEEEEECCCCe
Confidence 21110 125678999999999999 699999999996 479
Q ss_pred EEEEeCcceeeechhhhhh-hcCCCCCCCCCCCcEEEEEEE
Q psy2130 411 WLLFDDDVVDKIDQSTIED-FFGLTSDHQKSSETGYILFYQ 450 (470)
Q Consensus 411 W~~~nD~~V~~v~~~~v~~-~~g~~~~~~~~~~~aYiLfY~ 450 (470)
|++|||..|++++.++|.. -+| ...+||||+|.
T Consensus 310 W~~~dD~~V~~v~~~ev~~~~~~-------~~~~pY~l~Yv 343 (343)
T cd02666 310 WRKYNDETVTVVPASEVFLFTLG-------NTATPYFLVYV 343 (343)
T ss_pred EEEEECCeeEEecHHHHhhcccC-------CCCCCEEEEeC
Confidence 9999999999999887743 233 36799999994
No 44
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.60 E-value=2.9e-15 Score=148.16 Aligned_cols=101 Identities=27% Similarity=0.485 Sum_probs=86.2
Q ss_pred cCcccCCCcchhHHHHHHHhhchHHHHHHhccccc----cccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhc
Q psy2130 226 FGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK----NKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKE 301 (470)
Q Consensus 226 ~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~----~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~ 301 (470)
+||.|+||||||||+||+|+++|+|+++++..... ......++..+|+.++..++... ....+.|..++.++...
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~~~~l~~~~~~ 79 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSG-DRSPYGPINLLYLSWKH 79 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCC-CCCCcCHHHHHHHHHhh
Confidence 59999999999999999999999999999886433 23446678999999999995432 23467899999999888
Q ss_pred cCcCCccccccHHHHHHHHHHHHHhh
Q psy2130 302 KDEFDNYMQQDAHEFLNFLINHINEK 327 (470)
Q Consensus 302 ~~~~~~~~QqDa~E~~~~ll~~L~~~ 327 (470)
.+.|..++||||+||+..||+.|++.
T Consensus 80 ~~~f~~~~QqDa~Efl~~ll~~l~~~ 105 (328)
T cd02660 80 SRNLAGYSQQDAHEFFQFLLDQLHTH 105 (328)
T ss_pred chhhcccccccHHHHHHHHHHHHHHH
Confidence 88899999999999999999999973
No 45
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.60 E-value=2.3e-15 Score=148.02 Aligned_cols=103 Identities=29% Similarity=0.554 Sum_probs=77.7
Q ss_pred CCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccC--hHHHHHHHHHHHHHHHhCCCCCCccChHHHH
Q psy2130 218 RFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKN--KETLLSCLADLFHNIATHKKKVGSIAPKKFI 295 (470)
Q Consensus 218 ~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~--~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~ 295 (470)
+-+...+++||.|+||||||||+||+|+++|+|++.+.......... ...+...+++++ ... .....|..++
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~q~~~~~l~~~~----~~~--~~~~~P~~~~ 90 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKY----NDE--LANQAPRRLL 90 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccCcHHHHHHHHHHHHHHH----hhc--ccccCHHHHH
Confidence 44556799999999999999999999999999999987764222111 111222222332 221 2244699999
Q ss_pred HHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 296 ~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
..++...+.|..+.||||+||+..|++.|+.
T Consensus 91 ~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~ 121 (332)
T cd02671 91 NALREVNPMYEGYLQHDAQEVLQCILGNIQE 121 (332)
T ss_pred HHHHHhccccCCccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999985
No 46
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.59 E-value=6.1e-16 Score=147.76 Aligned_cols=115 Identities=28% Similarity=0.392 Sum_probs=82.1
Q ss_pred cccccc-CCchhhhh--hhhccchHHHHHhhhc---------C------------------------CccchhhHHHHHH
Q psy2130 22 YFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ---------D------------------------KISLGWECSLILE 65 (470)
Q Consensus 22 ~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~---------~------------------------~~~~~~~~~~~~~ 65 (470)
|+||.| |||||||| |+|+++|+|...+... . ......+..++.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 689999 99999999 9999999993332211 0 0022223366677
Q ss_pred hhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhcccccccee
Q psy2130 66 LDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETK 145 (470)
Q Consensus 66 l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~ 145 (470)
+. ...+.|..+.||||+||+..||+.|++++......... ........+++.++|.+++...++
T Consensus 81 l~-~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~f~~~~~~~~~ 144 (269)
T PF00443_consen 81 LS-SINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSW---------------KNTNSSEDSLISDLFGGQFESSIK 144 (269)
T ss_dssp HH-HHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHH---------------HHHHCCEESHHHHHH-EEEEEEEE
T ss_pred cc-ccccccccccccchhhhhcccccccchhhccccccccc---------------cccccccccccccccccccccccc
Confidence 77 66677999999999999999999999998653320000 001134577899999999999999
Q ss_pred ccccCCc
Q psy2130 146 CLNCETV 152 (470)
Q Consensus 146 C~~C~~~ 152 (470)
|..|+..
T Consensus 145 c~~c~~~ 151 (269)
T PF00443_consen 145 CSSCKNS 151 (269)
T ss_dssp ETTTTCE
T ss_pred ccccccc
Confidence 9999987
No 47
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.59 E-value=3e-15 Score=146.05 Aligned_cols=81 Identities=72% Similarity=1.212 Sum_probs=76.7
Q ss_pred CcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCC
Q psy2130 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFD 306 (470)
Q Consensus 227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~ 306 (470)
||.|+||||||||+||+|++ ..++.+|+.+|..|+........++|..|+.+++...+.|.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f~ 61 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFD 61 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCCC
Confidence 89999999999999999998 67888999999999998877789999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHh
Q psy2130 307 NYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 307 ~~~QqDa~E~~~~ll~~L~~ 326 (470)
.++||||+||+..||+.|++
T Consensus 62 ~~~QqDA~EFl~~lLd~l~~ 81 (300)
T cd02663 62 NYMHQDAHEFLNFLLNEIAE 81 (300)
T ss_pred CCccccHHHHHHHHHHHHHH
Confidence 99999999999999999987
No 48
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.58 E-value=4.7e-15 Score=146.23 Aligned_cols=93 Identities=30% Similarity=0.534 Sum_probs=79.8
Q ss_pred CcccCCCcchhHHHHHHHhhchHHHHHHhccccccc-----------cChHHHHHHHHHHHHHHHhCCCCCCccChHHHH
Q psy2130 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNK-----------KNKETLLSCLADLFHNIATHKKKVGSIAPKKFI 295 (470)
Q Consensus 227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~-----------~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~ 295 (470)
||.|+||||||||+||+|+++|+|++.++....... .....++.+|+.+|..|+... ...++|..|+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~--~~~i~p~~f~ 78 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGN--RSVVDPSGFV 78 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCC--CceEChHHHH
Confidence 899999999999999999999999999987654321 124578999999999999765 3578999999
Q ss_pred HHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 296 ~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
..++ +..++||||+||+..||+.|++
T Consensus 79 ~~l~-----~~~~~QqDa~EFl~~lLd~L~~ 104 (324)
T cd02668 79 KALG-----LDTGQQQDAQEFSKLFLSLLEA 104 (324)
T ss_pred HHhC-----CCCccccCHHHHHHHHHHHHHH
Confidence 8884 5678999999999999999986
No 49
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.56 E-value=8.5e-15 Score=143.15 Aligned_cols=100 Identities=29% Similarity=0.459 Sum_probs=86.1
Q ss_pred ccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc--ccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhcc
Q psy2130 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN--KKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEK 302 (470)
Q Consensus 225 ~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~ 302 (470)
++||.|.||||||||+||+|+++|+|++++++..... ......+..+|+.++..+..... ....|..+..++....
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~p~~~~~~l~~~~ 78 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSG--PGSAPRIFSSNLKQIS 78 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCC--CccChHHHHHHHHHHH
Confidence 5899999999999999999999999999998754332 33345788899999988876543 4678999999999999
Q ss_pred CcCCccccccHHHHHHHHHHHHHh
Q psy2130 303 DEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 303 ~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
+.|..+.||||+||+..|++.|++
T Consensus 79 ~~f~~~~qqDa~Efl~~ll~~l~~ 102 (304)
T cd02661 79 KHFRIGRQEDAHEFLRYLLDAMQK 102 (304)
T ss_pred HhhcCcchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999986
No 50
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.53 E-value=2.1e-14 Score=141.61 Aligned_cols=95 Identities=35% Similarity=0.610 Sum_probs=76.9
Q ss_pred CcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHH-HHHHHhhccCcC
Q psy2130 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKK-FITRLRKEKDEF 305 (470)
Q Consensus 227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~-~~~~l~~~~~~~ 305 (470)
||.|+||||||||+||+|+++|+||+.+++...........+..+|+.++..+...... ...|.. ++..+. .+.|
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~--~~~~~~~~l~~~~--~~~f 76 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHLMHTQRR--AEAPPDYFLEASR--PPWF 76 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccCCcchHHHHHHHHHHHHhhcCCc--ccCCHHHHHHHhc--cccc
Confidence 89999999999999999999999999999987654445566788899999888754332 344444 555443 4667
Q ss_pred CccccccHHHHHHHHHHHHH
Q psy2130 306 DNYMQQDAHEFLNFLINHIN 325 (470)
Q Consensus 306 ~~~~QqDa~E~~~~ll~~L~ 325 (470)
..+.||||+||+..||+.|+
T Consensus 77 ~~~~QqDa~EFl~~lLd~l~ 96 (327)
T cd02664 77 TPGSQQDCSEYLRYLLDRLH 96 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHH
Confidence 88999999999999999997
No 51
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.53 E-value=1.6e-14 Score=143.26 Aligned_cols=101 Identities=27% Similarity=0.452 Sum_probs=78.8
Q ss_pred CccCcccCCCcchhHHHHHHHhhchHHHHHHhccc-cccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhcc
Q psy2130 224 RYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYK-AKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEK 302 (470)
Q Consensus 224 ~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~-~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~ 302 (470)
|++||.|+||||||||+||+|+++|+|++.++... .........+..+|+.+|..+...... ...|..+........
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSESP--VKTTELTDKTRSFGW 78 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCcc--ccCcchhheeccCCC
Confidence 68999999999999999999999999999999863 223344567899999999999876553 233333322222234
Q ss_pred CcCCccccccHHHHHHHHHHHHHh
Q psy2130 303 DEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 303 ~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
..+..+.||||+||+..|++.|++
T Consensus 79 ~~~~~~~QqDa~Efl~~ll~~l~~ 102 (334)
T cd02659 79 DSLNTFEQHDVQEFFRVLFDKLEE 102 (334)
T ss_pred CCCCcccchhHHHHHHHHHHHHHH
Confidence 567789999999999999999986
No 52
>KOG0944|consensus
Probab=99.53 E-value=2e-14 Score=144.41 Aligned_cols=107 Identities=37% Similarity=0.564 Sum_probs=96.0
Q ss_pred CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcc----ccccccChHHHHHHHHHHHHHHHhCCCCC--------C
Q psy2130 220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEY----KAKNKKNKETLLSCLADLFHNIATHKKKV--------G 287 (470)
Q Consensus 220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~----~~~~~~~~~~l~~~l~~l~~~l~~~~~~~--------~ 287 (470)
-..++++||+|+||+||+|||||+|+.+|.|......- ......+.+.|-+++.+|...|.+..... .
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qn 381 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQN 381 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccC
Confidence 34789999999999999999999999999999877653 33446678999999999999999887665 4
Q ss_pred ccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 288 SIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 288 ~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
.++|..|+..++..++.|.+.+||||+||+.+|++.|.+
T Consensus 382 gIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~ 420 (763)
T KOG0944|consen 382 GISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRE 420 (763)
T ss_pred CcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999986
No 53
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=6.2e-14 Score=139.80 Aligned_cols=102 Identities=32% Similarity=0.527 Sum_probs=87.0
Q ss_pred CCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccc-------cChHHHHHHHHHHHHHHHhCCCCCCccChHHHH
Q psy2130 223 ERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNK-------KNKETLLSCLADLFHNIATHKKKVGSIAPKKFI 295 (470)
Q Consensus 223 ~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~-------~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~ 295 (470)
.|-+||.|+||||||||+||||.|++.+|++++...-.+. .....+..++..|+..+... ...++.|..|+
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~--~~haf~Ps~fK 340 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDG--NLHAFTPSGFK 340 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCc--cccccChHHHH
Confidence 4889999999999999999999999999999997433221 12445667777888877744 44589999999
Q ss_pred HHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 296 ~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
.++...+..|.++.|||.+||+.++||.||+
T Consensus 341 ~tIG~fn~~fsGy~QQDSqEFiaflLDgLHE 371 (823)
T COG5560 341 KTIGSFNEEFSGYDQQDSQEFIAFLLDGLHE 371 (823)
T ss_pred HHHhhhHHHhcCccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999
No 54
>KOG1865|consensus
Probab=99.48 E-value=6.9e-14 Score=138.92 Aligned_cols=108 Identities=29% Similarity=0.481 Sum_probs=93.6
Q ss_pred CCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccc--cccChHHHHHHHHHHHHHHHhCCCCCCccChHHH
Q psy2130 217 DRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK--NKKNKETLLSCLADLFHNIATHKKKVGSIAPKKF 294 (470)
Q Consensus 217 ~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~--~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~ 294 (470)
...+......||.|.|||||+||+||+|.++||+.++|+..... ......++++.++..+......... .+.|..+
T Consensus 100 ~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~g~--pisP~~i 177 (545)
T KOG1865|consen 100 SSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNPGH--PISPSQI 177 (545)
T ss_pred cccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCCCC--ccChHHH
Confidence 33345677899999999999999999999999999999975544 4566778888998888776665443 8999999
Q ss_pred HHHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 295 ITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 295 ~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
+..|+.....|..+.|+|||||++.+++.|+.
T Consensus 178 ~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk 209 (545)
T KOG1865|consen 178 LSNLRNISAHFGRGRQEDAHEFLRFTVDAMQK 209 (545)
T ss_pred HHhhhhhcccccCCchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987
No 55
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.47 E-value=5.1e-14 Score=135.86 Aligned_cols=66 Identities=36% Similarity=0.733 Sum_probs=61.4
Q ss_pred CcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCC
Q psy2130 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFD 306 (470)
Q Consensus 227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~ 306 (470)
||.|+||||||||+||+|+++|+|+++++. .|..++..+....+.|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~---------------------------------~P~~~~~~l~~~~~~f~ 47 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE---------------------------------TPKELFSQVCRKAPQFK 47 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH---------------------------------CHHHHHHHHHHhhHhhc
Confidence 899999999999999999999999999965 67788888888888899
Q ss_pred ccccccHHHHHHHHHHHHH
Q psy2130 307 NYMQQDAHEFLNFLINHIN 325 (470)
Q Consensus 307 ~~~QqDa~E~~~~ll~~L~ 325 (470)
.++||||+||+..|++.|+
T Consensus 48 ~~~QqDA~Efl~~lld~l~ 66 (279)
T cd02667 48 GYQQQDSHELLRYLLDGLR 66 (279)
T ss_pred CCchhhHHHHHHHHHHHHH
Confidence 9999999999999999997
No 56
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.1e-13 Score=124.17 Aligned_cols=103 Identities=32% Similarity=0.442 Sum_probs=82.2
Q ss_pred CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhc--------cccccccChHHHHHHHHHHHHHHHhCCCCCCccChHH
Q psy2130 222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLE--------YKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKK 293 (470)
Q Consensus 222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~--------~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~ 293 (470)
+-.+.||.|.|||||||++||+|+++..+..++.. .+.+...+.......+..+...+-....+ .++|++
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~--sis~~n 145 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPK--SISPRN 145 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCc--ccchHH
Confidence 66789999999999999999999999999986543 22223333434455555555555444433 699999
Q ss_pred HHHHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 294 FITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 294 ~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
|++.+.-.++.|....|||++||+++++|.||+
T Consensus 146 F~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHe 178 (415)
T COG5533 146 FIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHE 178 (415)
T ss_pred HHHHHccccccccccchhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999
No 57
>KOG1873|consensus
Probab=99.29 E-value=4.4e-12 Score=129.00 Aligned_cols=104 Identities=27% Similarity=0.432 Sum_probs=82.0
Q ss_pred CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccc---------cC----------hHHHHHHHHHHHHHHH
Q psy2130 220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNK---------KN----------KETLLSCLADLFHNIA 280 (470)
Q Consensus 220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~---------~~----------~~~l~~~l~~l~~~l~ 280 (470)
+.....+||.|+|||||+||+||.|.++|.+++.|...+.... .. ..++..+|.. .+.
T Consensus 200 ~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~---~~e 276 (877)
T KOG1873|consen 200 RRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN---LLE 276 (877)
T ss_pred cccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh---hhh
Confidence 4456789999999999999999999999999999987655431 11 2223333333 222
Q ss_pred hCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 281 THKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 281 ~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
........+.|+.|...+....+.|..+.|||+||++..||+.|..
T Consensus 277 ~~e~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~ 322 (877)
T KOG1873|consen 277 MSETTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRS 322 (877)
T ss_pred hhhccCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhH
Confidence 2334567999999999999999999999999999999999999876
No 58
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.3e-11 Score=120.37 Aligned_cols=104 Identities=33% Similarity=0.514 Sum_probs=88.9
Q ss_pred CCccCcccCCCcchhHHHHHHHhhchHHHHHHhc----cccccccChHHHHHHHHHHHHHHHhCC--CCCCccChHHHHH
Q psy2130 223 ERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLE----YKAKNKKNKETLLSCLADLFHNIATHK--KKVGSIAPKKFIT 296 (470)
Q Consensus 223 ~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~----~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~~~~~p~~~~~ 296 (470)
..++||+|+||+||++|+||.|+....+...+.. +..--..+.+.+.+++.++...|...+ .....+.|..|+.
T Consensus 301 s~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~ 380 (749)
T COG5207 301 SPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKM 380 (749)
T ss_pred CCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHH
Confidence 3499999999999999999999998777665443 222345678889999999999887766 4457899999999
Q ss_pred HHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 297 RLRKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 297 ~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
.++..++.|....||||+||+.+||+.|..
T Consensus 381 ~igq~h~eFg~~~QQDA~EFLlfLL~kirk 410 (749)
T COG5207 381 LIGQDHPEFGKFAQQDAHEFLLFLLEKIRK 410 (749)
T ss_pred HHcCCchhhhhhhhhhHHHHHHHHHHHHhh
Confidence 999999999999999999999999999987
No 59
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.23 E-value=7.2e-12 Score=118.05 Aligned_cols=49 Identities=47% Similarity=0.720 Sum_probs=45.7
Q ss_pred CcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCC
Q psy2130 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFD 306 (470)
Q Consensus 227 GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~ 306 (470)
||.|+||||||||+||+|+++|+||+++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999986532
Q ss_pred ccccccHHHHHHHHHHHHH
Q psy2130 307 NYMQQDAHEFLNFLINHIN 325 (470)
Q Consensus 307 ~~~QqDa~E~~~~ll~~L~ 325 (470)
+||||+||+..|++.|+
T Consensus 33 --~QqDa~EFl~~ll~~l~ 49 (240)
T cd02662 33 --EQQDAHELFQVLLETLE 49 (240)
T ss_pred --hhcCHHHHHHHHHHHHH
Confidence 89999999999999998
No 60
>KOG1864|consensus
Probab=99.21 E-value=5.4e-11 Score=123.33 Aligned_cols=105 Identities=60% Similarity=0.969 Sum_probs=91.5
Q ss_pred CCCccCcccCCCcchhH--HHHHHHhhchHHHHHHhcccccccc---ChHHHHHHHHHHHHHHHhCCCCCCccChHHHHH
Q psy2130 222 NERYFGLVNFGNTCYSN--SVLQALYFCKPFRDRVLEYKAKNKK---NKETLLSCLADLFHNIATHKKKVGSIAPKKFIT 296 (470)
Q Consensus 222 ~~~~~GL~N~gntCy~N--s~LQ~L~~~~~~~~~i~~~~~~~~~---~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~ 296 (470)
+.+..|..+.+++|+.| ++.+.+..+..+++........... ....+...+..++............+.|..++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~ 308 (587)
T KOG1864|consen 229 NERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFIS 308 (587)
T ss_pred cccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhh
Confidence 45677889999999999 9999999999999776655443333 477778888888888888888899999999999
Q ss_pred HHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 297 RLRKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 297 ~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
.+++....|..+.||||+||+..+++.+.+
T Consensus 309 ~~~~~~~~f~~~~qQda~eF~~~l~~~~~e 338 (587)
T KOG1864|consen 309 DLIKENELFTNGMQQDAHEFLNFLLNEISE 338 (587)
T ss_pred hhhhcCCccCchhhccHHHHhhhhccchhh
Confidence 999999999999999999999999999987
No 61
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1e-10 Score=119.26 Aligned_cols=100 Identities=30% Similarity=0.533 Sum_probs=87.5
Q ss_pred CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhc
Q psy2130 222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKE 301 (470)
Q Consensus 222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~ 301 (470)
-.|++||.|.|.||||||+||+||.+..||+.+..+++......+.+..+||++|.+|+..... +++.++.. .-.
T Consensus 190 eTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~grdSValaLQr~Fynlq~~~~P---vdTteltr--sfg 264 (1089)
T COG5077 190 ETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRDSVALALQRLFYNLQTGEEP---VDTTELTR--SFG 264 (1089)
T ss_pred ceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHhccCCC---cchHHhhh--hcC
Confidence 5699999999999999999999999999999999999999999999999999999999987765 33434332 225
Q ss_pred cCcCCccccccHHHHHHHHHHHHHh
Q psy2130 302 KDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 302 ~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
+..+....|||.+||-..|.+.|+.
T Consensus 265 Wds~dsf~QHDiqEfnrVl~DnLEk 289 (1089)
T COG5077 265 WDSDDSFMQHDIQEFNRVLQDNLEK 289 (1089)
T ss_pred cccchHHHHHhHHHHHHHHHHHHHH
Confidence 6677789999999999999999996
No 62
>KOG1863|consensus
Probab=99.11 E-value=1.3e-10 Score=130.10 Aligned_cols=101 Identities=29% Similarity=0.522 Sum_probs=89.3
Q ss_pred CCCc-cCcccCCCcchhHHHHHHHhhchHHHHHHhccc--cccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHH
Q psy2130 222 NERY-FGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYK--AKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRL 298 (470)
Q Consensus 222 ~~~~-~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~--~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l 298 (470)
..++ +||.|.||||||||+||+||.++.||..+..++ .....+...+..+|+.+|..|+....+ .+++..+...+
T Consensus 166 ~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k--~Vdt~~~~~~~ 243 (1093)
T KOG1863|consen 166 LTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRK--YVDTSELTKSL 243 (1093)
T ss_pred cCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCC--CcCchhhhhhh
Confidence 4455 999999999999999999999999999999998 555666777999999999999988765 78888888888
Q ss_pred hhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 299 RKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 299 ~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
.... .....|||++||...|++.|++
T Consensus 244 ~~~~--~~~~~QqDvqEf~~~l~d~LE~ 269 (1093)
T KOG1863|consen 244 GWDS--NDSFEQQDVQEFLTKLLDWLED 269 (1093)
T ss_pred hccc--ccHHhhhhHHHHHHHHHHHHHh
Confidence 7765 6678999999999999999997
No 63
>KOG1868|consensus
Probab=99.01 E-value=9.2e-10 Score=114.71 Aligned_cols=105 Identities=36% Similarity=0.528 Sum_probs=85.7
Q ss_pred CCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccc------ccccChHHHHHHHHHHHHHHHhCCCCCCccChHHH
Q psy2130 221 PNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKA------KNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKF 294 (470)
Q Consensus 221 ~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~------~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~ 294 (470)
...+.+||.|+||+||||+++|||+.++.|++.++...- ........+..+...++.+++..... ..+.|..|
T Consensus 297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~-~s~~P~~f 375 (653)
T KOG1868|consen 297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQ-FSVLPRRF 375 (653)
T ss_pred cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCc-eecCcHHH
Confidence 356789999999999999999999999999977765322 22334556777777777766655333 35889999
Q ss_pred HHHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 295 ITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 295 ~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
+..+....+.|....|||++||+..+++.||+
T Consensus 376 ~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe 407 (653)
T KOG1868|consen 376 IRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHE 407 (653)
T ss_pred HHHHhhcccccccccccchHHHHHHHHHhhhH
Confidence 99999999999998899999999999999997
No 64
>KOG2026|consensus
Probab=98.87 E-value=4e-09 Score=100.26 Aligned_cols=149 Identities=17% Similarity=0.229 Sum_probs=104.9
Q ss_pred hhHhhCCCCCCCCCccccccc-CCchhhhh--hhhccchHHH------------------------HHhhhcCCccc-hh
Q psy2130 7 LEKEIGPDRFPPNERYFGLVN-GKTCKEKE--DRIEKSQPFW------------------------EQTSLQDKISL-GW 58 (470)
Q Consensus 7 ~~~~~~~~~~~~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~------------------------~~~~~~~~~~~-~~ 58 (470)
+-+.++.+.+.+ +.|||.| -++=|.|+ |+|.+.+|+. ..+...+..+. .+
T Consensus 121 ~~raLd~~tYLp--G~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~d~~~~lv~rl~~l~rklw~~r~fk~hvS 198 (442)
T KOG2026|consen 121 LSRALDGSTYLP--GFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYFDNLTELVQRLGELIRKLWNPRNFKGHVS 198 (442)
T ss_pred hhhhhcCCccee--eeeccchhhhHHHHHHHHHHHhccchhhhhhcccccccchhHHHHHHHHHHHHHhcChhhhcccCC
Confidence 335555555553 5999999 99999999 9999999981 11122222122 22
Q ss_pred hHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhcc
Q psy2130 59 ECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQG 138 (470)
Q Consensus 59 ~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g 138 (470)
+-++++++.......|..+.|-|+-|||.|||+.||.+++.. ++..|+|++.|+|
T Consensus 199 phe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~-------------------------k~~~SIi~~~fqG 253 (442)
T KOG2026|consen 199 PHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGS-------------------------KKASSIIHKSFQG 253 (442)
T ss_pred HHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCC-------------------------CCchhHhhHhhcc
Confidence 226776666455678999999999999999999999988532 2456899999999
Q ss_pred ccccceeccc----cCCcccccCCCcccccccCCC--------------CCHHHHhccCCcc
Q psy2130 139 ILTSETKCLN----CETVSSKDEDFFDLQVDIKQN--------------TSITQCLRGFSST 182 (470)
Q Consensus 139 ~~~~~~~C~~----C~~~s~~~~~f~~Lsl~i~~~--------------~sl~~~L~~~~~~ 182 (470)
.++...+=.. --......-+|+.|.|++|.. +.|-++|..|...
T Consensus 254 ~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~ 315 (442)
T KOG2026|consen 254 EVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGE 315 (442)
T ss_pred eEEeeeeccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCc
Confidence 9877654333 111245567999999999952 4667788776543
No 65
>KOG1866|consensus
Probab=98.86 E-value=4.1e-09 Score=107.58 Aligned_cols=109 Identities=30% Similarity=0.501 Sum_probs=93.5
Q ss_pred CCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc----ccChHHHHHHHHHHHHHHHhCCCCCCccCh
Q psy2130 216 PDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN----KKNKETLLSCLADLFHNIATHKKKVGSIAP 291 (470)
Q Consensus 216 ~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~----~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p 291 (470)
.-..+...+++||+|-|+|||||+++|-++++|.++..+..+.... ....+.+++.+|.+|..+..... .++.|
T Consensus 86 pVgsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~l--QyyVP 163 (944)
T KOG1866|consen 86 PVGSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQL--QYYVP 163 (944)
T ss_pred CcCCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhh--hhhcc
Confidence 3345667899999999999999999999999999999877654432 22244599999999999987654 48899
Q ss_pred HHHHHHHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 292 KKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
..+++..+.........+||||-|||..|++.+++
T Consensus 164 eg~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De 198 (944)
T KOG1866|consen 164 EGFWKQFRLWGEPLNLREQHDALEFFNSLLDSLDE 198 (944)
T ss_pred hhHHHHhhccCCccchHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997
No 66
>KOG1871|consensus
Probab=98.68 E-value=3e-08 Score=94.80 Aligned_cols=110 Identities=25% Similarity=0.342 Sum_probs=77.2
Q ss_pred CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccc---cccChHHHHHHHHHHHHHHHhCCC------------
Q psy2130 220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK---NKKNKETLLSCLADLFHNIATHKK------------ 284 (470)
Q Consensus 220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~---~~~~~~~l~~~l~~l~~~l~~~~~------------ 284 (470)
|..-.++|++|-+|.||||++||+|..|++|.+.+...+.. ......+++.++..+..+......
T Consensus 23 p~~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~ 102 (420)
T KOG1871|consen 23 PVPIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVP 102 (420)
T ss_pred ccccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCcc
Confidence 34478999999999999999999999999999988765522 234466777777766665542211
Q ss_pred --------------CCCccChHHHHHHH-hh-ccCcCCccccccHHHHHHHHHHHHHhhhh
Q psy2130 285 --------------KVGSIAPKKFITRL-RK-EKDEFDNYMQQDAHEFLNFLINHINEKCM 329 (470)
Q Consensus 285 --------------~~~~~~p~~~~~~l-~~-~~~~~~~~~QqDa~E~~~~ll~~L~~~~~ 329 (470)
...++.|..+...+ .+ .......+.|.||+||+..+++.||+...
T Consensus 103 ~~~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~ 163 (420)
T KOG1871|consen 103 EHVVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESS 163 (420)
T ss_pred ccccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHH
Confidence 12233343333333 33 23444579999999999999999998444
No 67
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=98.66 E-value=7.1e-08 Score=93.90 Aligned_cols=100 Identities=27% Similarity=0.329 Sum_probs=85.4
Q ss_pred cCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcC
Q psy2130 226 FGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEF 305 (470)
Q Consensus 226 ~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~ 305 (470)
.||.|.+++||+||+||+|+++|++|+.++.+. ......++.+.|.=||+.|... .......+..+.++++......
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~c~~e~cL~cELgfLf~ml~~~-~~g~~cq~sNflr~l~~~~~a~ 77 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--ECPKEFCLLCELGFLFDMLDSK-AKGINCQASNFLRALSWIPEAA 77 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--CCCccccHHHHHHHHHHHhhhh-cCCCcChHHHHHHHHhcCHHHH
Confidence 499999999999999999999999999999988 5677889999999999999833 3344677888999888876545
Q ss_pred CccccccHHHHHHHHHHHHHhhh
Q psy2130 306 DNYMQQDAHEFLNFLINHINEKC 328 (470)
Q Consensus 306 ~~~~QqDa~E~~~~ll~~L~~~~ 328 (470)
..+.|+|+.+++.+|++.|+...
T Consensus 78 ~l~~~~~iq~~~~Fll~~l~~~~ 100 (295)
T PF13423_consen 78 ALGLQQDIQSLNRFLLEQLSMEL 100 (295)
T ss_pred hcchhHHHHHHHHHHHHHHhHHH
Confidence 56679999999999999999733
No 68
>KOG1867|consensus
Probab=98.56 E-value=7.4e-08 Score=98.58 Aligned_cols=105 Identities=27% Similarity=0.402 Sum_probs=91.4
Q ss_pred CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccc---cccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHH
Q psy2130 222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK---NKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRL 298 (470)
Q Consensus 222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~---~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l 298 (470)
.-+..||.|+|+||+||+++|+|.+.+..+...+..... ......++...+.+++..+++... ...+.|..+....
T Consensus 158 ~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~-~~~~sp~~~l~~~ 236 (492)
T KOG1867|consen 158 ALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHN-RTPYSPFELLNLV 236 (492)
T ss_pred eecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCC-CCCcChHHHHHHH
Confidence 457899999999999999999999999988887764333 233377899999999999999886 5688999999999
Q ss_pred hhccCcCCccccccHHHHHHHHHHHHHhh
Q psy2130 299 RKEKDEFDNYMQQDAHEFLNFLINHINEK 327 (470)
Q Consensus 299 ~~~~~~~~~~~QqDa~E~~~~ll~~L~~~ 327 (470)
++..+.+.+.+|||++||+..+++.++..
T Consensus 237 ~k~~~~~~g~~Qqda~eF~~~~~~~~~~~ 265 (492)
T KOG1867|consen 237 WKHSPNLAGYEQQDAHEFLIALLDRLHRE 265 (492)
T ss_pred HHhCcccccccccchHHHHHHhccccccc
Confidence 99999999999999999999999999863
No 69
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.54 E-value=5.2e-08 Score=91.19 Aligned_cols=20 Identities=65% Similarity=1.021 Sum_probs=19.1
Q ss_pred CcccCCCcchhHHHHHHHhh
Q psy2130 227 GLVNFGNTCYSNSVLQALYF 246 (470)
Q Consensus 227 GL~N~gntCy~Ns~LQ~L~~ 246 (470)
||.|+||+||+||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH
Confidence 89999999999999999976
No 70
>KOG1872|consensus
Probab=98.53 E-value=3.9e-08 Score=96.45 Aligned_cols=123 Identities=19% Similarity=0.165 Sum_probs=87.9
Q ss_pred Cccccccc-CCchhhhh--hhhccchHH------------------------------HHHhhhcCCccchhhHHHHHHh
Q psy2130 20 ERYFGLVN-GKTCKEKE--DRIEKSQPF------------------------------WEQTSLQDKISLGWECSLILEL 66 (470)
Q Consensus 20 ~~~~GL~N-GNtCy~Ns--Q~L~~~~~f------------------------------~~~~~~~~~~~~~~~~~~~~~l 66 (470)
.-++|+.| |||||||+ |||-..+++ |+.+... ....+-.++..+
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~---~~v~pi~llqtl 179 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK---GAVAPINLLQTL 179 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc---CCcchHHHHHHH
Confidence 34679999 99999999 999888877 2222222 223333666777
Q ss_pred hcccCCCCCC------cccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhcccc
Q psy2130 67 DLCSSDEFDN------YMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGIL 140 (470)
Q Consensus 67 ~~~~~~~f~~------~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~ 140 (470)
. +..|+|.- +.||||.|+...++..+++.+..... .......+...|+.++
T Consensus 180 ~-~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~----------------------~~~~~~~~d~~f~~~~ 236 (473)
T KOG1872|consen 180 S-SQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATE----------------------APCLEAEAAAGFGAEF 236 (473)
T ss_pred H-HHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccc----------------------ccchhHHHHHhhcccc
Confidence 7 66677755 79999999999999999985431110 0145677899999999
Q ss_pred ccceeccccCCcccc--cCCCcccccccCC
Q psy2130 141 TSETKCLNCETVSSK--DEDFFDLQVDIKQ 168 (470)
Q Consensus 141 ~~~~~C~~C~~~s~~--~~~f~~Lsl~i~~ 168 (470)
..+..|..-...... .|.|..|+.-+-+
T Consensus 237 ~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~ 266 (473)
T KOG1872|consen 237 STTMSCSEGEDEGGGAGRELVDQLKCIINK 266 (473)
T ss_pred ccceeeccCcccccccccccccccceEEee
Confidence 999999987666433 6777777766654
No 71
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.42 E-value=1.7e-07 Score=88.21 Aligned_cols=48 Identities=56% Similarity=0.769 Sum_probs=42.6
Q ss_pred cccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCc
Q psy2130 228 LVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDN 307 (470)
Q Consensus 228 L~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~ 307 (470)
|.|.||.||+|+++|+|.. +++..+.|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~---------------------------------------------------i~~~~~~F~~ 30 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSS---------------------------------------------------IGKINTEFDN 30 (245)
T ss_pred ceecCCeeeehhHHHHHHH---------------------------------------------------HhhhhhhcCC
Confidence 6899999999999998744 4556778899
Q ss_pred cccccHHHHHHHHHHHHHh
Q psy2130 308 YMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 308 ~~QqDa~E~~~~ll~~L~~ 326 (470)
+.||||+||+..|++.|++
T Consensus 31 ~~QQDAhEFL~~LLd~l~~ 49 (245)
T cd02673 31 DDQQDAHEFLLTLLEAIDD 49 (245)
T ss_pred CchhhHHHHHHHHHHHHHH
Confidence 9999999999999999986
No 72
>KOG1870|consensus
Probab=98.40 E-value=4.3e-07 Score=99.64 Aligned_cols=111 Identities=32% Similarity=0.442 Sum_probs=93.9
Q ss_pred CCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc-------ccChHHHHHHHHHHHHHHHhCCCCCCc
Q psy2130 216 PDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN-------KKNKETLLSCLADLFHNIATHKKKVGS 288 (470)
Q Consensus 216 ~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~-------~~~~~~l~~~l~~l~~~l~~~~~~~~~ 288 (470)
..+.+...|.+||.|+|||||||+.+|+|...++++++++...... ......+......+...++..... .
T Consensus 237 ~~~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~--~ 314 (842)
T KOG1870|consen 237 EISSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKS--A 314 (842)
T ss_pred cccCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCcc--c
Confidence 3345667899999999999999999999999999999998633222 233556777888888888888773 8
Q ss_pred cChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhh
Q psy2130 289 IAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKC 328 (470)
Q Consensus 289 ~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~ 328 (470)
+.|..+...+....+.+.+..|+|.+||+-++++.+|+.-
T Consensus 315 v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl 354 (842)
T KOG1870|consen 315 VAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDL 354 (842)
T ss_pred cCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHh
Confidence 9999999999999999999999999999999999999833
No 73
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.28 E-value=5.8e-07 Score=83.16 Aligned_cols=20 Identities=50% Similarity=0.946 Sum_probs=18.6
Q ss_pred CcccCCCcchhHHHHHHHhh
Q psy2130 227 GLVNFGNTCYSNSVLQALYF 246 (470)
Q Consensus 227 GL~N~gntCy~Ns~LQ~L~~ 246 (470)
||.|.|||||+|++.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH
Confidence 89999999999999999865
No 74
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.25 E-value=6.7e-07 Score=83.94 Aligned_cols=20 Identities=75% Similarity=1.150 Sum_probs=19.3
Q ss_pred CcccCCCcchhHHHHHHHhh
Q psy2130 227 GLVNFGNTCYSNSVLQALYF 246 (470)
Q Consensus 227 GL~N~gntCy~Ns~LQ~L~~ 246 (470)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH
Confidence 89999999999999999987
No 75
>KOG3556|consensus
Probab=98.02 E-value=1.5e-06 Score=85.79 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=78.9
Q ss_pred CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCC----CccChHHHHHH
Q psy2130 222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKV----GSIAPKKFITR 297 (470)
Q Consensus 222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~----~~~~p~~~~~~ 297 (470)
-..+.|++..-|.||+||.+..++.-....+.++--..... ...-...++.+++.....+.+. .......++..
T Consensus 365 ~gk~kgiqgh~nscyldstlf~~f~f~sv~dS~l~rrp~p~--d~~nYse~q~~LRseiVnplr~n~fVr~~~~mklR~~ 442 (724)
T KOG3556|consen 365 EGKIKGIQGHPNSCYLDSTLFKPFEFDSVTDSTLPRRPPPS--DSMNYSEMQHSLRSEIVNPLRRNQFVRQNPAMKLRVE 442 (724)
T ss_pred hcccccccCCcchhhccccccccccccccccccccCCCCcc--cccccHHHHHHHHHhhhchhhhcceeecCHHHHHHHH
Confidence 44678999999999999999999887777766653222211 1112223334444333333222 22222233333
Q ss_pred HhhccCcC-CccccccHHHHHHHHHHHHHh-----------------------------------------hhhhhcCCC
Q psy2130 298 LRKEKDEF-DNYMQQDAHEFLNFLINHINE-----------------------------------------KCMKVKKLP 335 (470)
Q Consensus 298 l~~~~~~~-~~~~QqDa~E~~~~ll~~L~~-----------------------------------------~~~~i~~lP 335 (470)
+..++... ...+..|++||++.++..+-. ..++++..|
T Consensus 443 ldql~~~sG~tceekdpEEFLn~l~t~i~rVEp~lkisaGqd~yfyQlFleKdekv~~p~~qqL~e~sf~sS~ik~~e~p 522 (724)
T KOG3556|consen 443 LDQLNFRSGDTCEEKDPEEFLNGLKTLIARVEPKLKISAGQDVYFYQLFLEKDEKVGHPGFQQLSELSFPSSSIKSTETP 522 (724)
T ss_pred HHhhhccccCcccccCHHHHHHHHHHHhcccceeeeeccCCchhhhhhhhhcccccCCchHHHHhhhhccccccccccCc
Confidence 33333322 367789999999999888766 445678899
Q ss_pred ceEEEEeeeeeeec
Q psy2130 336 MILALHLKRFKYMD 349 (470)
Q Consensus 336 ~~L~i~l~R~~~~~ 349 (470)
..++|+..||.-+.
T Consensus 523 Sc~iiqmprfgk~~ 536 (724)
T KOG3556|consen 523 SCQIIQMPRFGKSQ 536 (724)
T ss_pred chhheeccccCccc
Confidence 99999999997543
No 76
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.62 E-value=5.5e-05 Score=72.24 Aligned_cols=53 Identities=38% Similarity=0.504 Sum_probs=44.7
Q ss_pred CCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHH
Q psy2130 223 ERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLF 276 (470)
Q Consensus 223 ~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~ 276 (470)
.++.||.|.|.+||+|++||+|+++|+||+. +...........+++.+|.-||
T Consensus 13 t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~-~~~~~~~~~~~~~l~~el~~lf 65 (268)
T cd02672 13 TNYAGLENHITNSYCNSLLQLLYFIPPFRNF-TAIILVACPKESCLLCELGYLF 65 (268)
T ss_pred ccccccccCCccchHHHHHHHHHhcHHHHHH-HHhhcccCCcCccHHHHHHHHH
Confidence 4699999999999999999999999999998 4444444556778888888888
No 77
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=97.52 E-value=0.0016 Score=59.66 Aligned_cols=37 Identities=19% Similarity=0.428 Sum_probs=30.4
Q ss_pred CCcceEEEEEEEeecCCCCCcEEEEEEec-CCcEEEEeCcc
Q psy2130 379 PDRMYNLVAVVIHCGSGPNRGHYISIVKS-HDFWLLFDDDV 418 (470)
Q Consensus 379 ~~~~Y~L~avV~H~G~~~~~GHY~a~vr~-~~~W~~~nD~~ 418 (470)
+...|++.+||-+.-. --|+++++++ +|.|.+|||-+
T Consensus 215 eg~~Y~Vt~VIQY~~~---~~HFvtWi~~~dGsWLecDDLk 252 (275)
T PF15499_consen 215 EGCLYQVTSVIQYQAN---LNHFVTWIRDSDGSWLECDDLK 252 (275)
T ss_pred cCeeEEEEEEEEEecc---CceeEEEEEcCCCCeEeeccCC
Confidence 3467999999998653 4599999996 68999999964
No 78
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=97.43 E-value=0.00045 Score=59.79 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=26.3
Q ss_pred EEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechh
Q psy2130 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQS 425 (470)
Q Consensus 386 ~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~ 425 (470)
.+.|.-.| .||.+.+.+..+.||.+||+.+.+-.+.
T Consensus 130 ~agi~~~g----~~Havfa~~ts~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 130 HAGIFLKG----QEHAVFACVTSDGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp EEEEEEES----TTEEEEEEEETTCEEEEETTEEEE----
T ss_pred hhHheecC----CcceEEEEEeeCcEEEecCCeeeeCCCC
Confidence 34444444 5799999999999999999999986553
No 79
>KOG1887|consensus
Probab=96.89 E-value=0.00014 Score=76.38 Aligned_cols=114 Identities=18% Similarity=0.295 Sum_probs=76.2
Q ss_pred hhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEe
Q psy2130 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVK 406 (470)
Q Consensus 327 ~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr 406 (470)
....|.++|++++|.+..-.... ...--.+...+..++|++..-..+..+...|+|+++|+-+.. .++|.|+..
T Consensus 674 v~h~is~~P~vftIvlewEk~ET---e~eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~---~~~~~C~Ay 747 (806)
T KOG1887|consen 674 VHHILSPCPPVFTIVLEWEKSET---EKEISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE---GEEYICFAY 747 (806)
T ss_pred hhhhcCCCCCeeEeeeehhcccc---hHHHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc---cceEEEeec
Confidence 34566789999999554321110 001112223445566665443345567789999999986632 569999999
Q ss_pred cCCcEE--EEeCcceeee-chhhhhhhcCCCCCCCCCCCcEEEEEEEec
Q psy2130 407 SHDFWL--LFDDDVVDKI-DQSTIEDFFGLTSDHQKSSETGYILFYQSR 452 (470)
Q Consensus 407 ~~~~W~--~~nD~~V~~v-~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~ 452 (470)
.++.|+ ..+|..+..| +|.+|..++|. .+-.+-||||+.+
T Consensus 748 e~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e------~~vrpeil~ye~~ 790 (806)
T KOG1887|consen 748 EPNRWVSLRHEDSQGEVVGDWKDVVRFCGE------RKVRPEILFYEAQ 790 (806)
T ss_pred cCCcchhhHHHHHHhhhccchHHHHHHHhc------ccccHHHHHHHHH
Confidence 988888 9999877766 57788888874 3456888888764
No 80
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.79 E-value=0.0012 Score=61.74 Aligned_cols=20 Identities=35% Similarity=0.710 Sum_probs=18.3
Q ss_pred CcccCCC-cchhHHHHHHHhh
Q psy2130 227 GLVNFGN-TCYSNSVLQALYF 246 (470)
Q Consensus 227 GL~N~gn-tCy~Ns~LQ~L~~ 246 (470)
|+.|+.| +||+.|+|-+||+
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~ 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH
Confidence 7899999 9999999998865
No 81
>KOG4598|consensus
Probab=94.99 E-value=0.016 Score=60.00 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=54.5
Q ss_pred CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhc
Q psy2130 222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKE 301 (470)
Q Consensus 222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~ 301 (470)
..|++||.|..-+||+|+.+|+|+..|.+++.+.-.+.. ++....+.+.+ .
T Consensus 84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~~---------------------------~~et~dlt~sf--g 134 (1203)
T KOG4598|consen 84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSEND---------------------------SLETKDLTQSF--G 134 (1203)
T ss_pred CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCCcc---------------------------cccchhhHhhc--C
Confidence 468999999999999999999999999999988632211 11111111111 2
Q ss_pred cCcCCccccccHHHHHHHHHHHHHh
Q psy2130 302 KDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 302 ~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
+..-+.++|||.+|+-...++.|+-
T Consensus 135 w~s~ea~~qhdiqelcr~mfdaleh 159 (1203)
T KOG4598|consen 135 WTSNEAYDQHDVQELCRLMFDALEH 159 (1203)
T ss_pred CCcchhhhhhhHHHHHHHHHHHHHh
Confidence 2333568899999999999998875
No 82
>KOG1275|consensus
Probab=91.93 E-value=0.4 Score=51.80 Aligned_cols=74 Identities=27% Similarity=0.380 Sum_probs=60.8
Q ss_pred CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhh
Q psy2130 222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRK 300 (470)
Q Consensus 222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~ 300 (470)
+.-+.||.-.+..-|.||+||.|+.+|++|..++.+ ......++++.|.=||..+...... ......|..+++.
T Consensus 496 qT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H---~C~~e~CL~CELGFLF~Ml~~S~G~--~Cqa~NFlraf~t 569 (1118)
T KOG1275|consen 496 QTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH---ICTKEFCLLCELGFLFTMLDSSTGD--PCQANNFLRAFRT 569 (1118)
T ss_pred cceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcC---ccchhHHHHHHHHHHHHHHhhhcCC--ccchhHHHHHHhh
Confidence 446788888888999999999999999999999988 4566788999999999998876655 5666677766655
No 83
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=91.41 E-value=1.2 Score=43.47 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=37.0
Q ss_pred CCccCcccCCCcchhHHHHHHHhhc------hHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHH
Q psy2130 223 ERYFGLVNFGNTCYSNSVLQALYFC------KPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFIT 296 (470)
Q Consensus 223 ~~~~GL~N~gntCy~Ns~LQ~L~~~------~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~ 296 (470)
.|++=|.=.-|.||+||++=+|=+. |.+.+....+. ..+|..|..
T Consensus 100 ~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~~l~~aw~~f~-----------------------------~G~~~~fVa 150 (320)
T PF08715_consen 100 NGFRVLKQSDNNCWVNAACLQLQALKIKFKSPGLDEAWNEFK-----------------------------AGDPAPFVA 150 (320)
T ss_dssp TTEEEE---TTTHHHHHHHHHHTTST--BSSHHHHHHHHHHH-----------------------------TT--HHHHH
T ss_pred CCEEEEEecCCCcHHHHHHHHHHhcCCccCCHHHHHHHHHHh-----------------------------CCChHHHHH
Confidence 3556666677999999976544332 22222222222 344555554
Q ss_pred HHhhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 297 RLRKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 297 ~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
.+=. ......++-.||++++..|++.++.
T Consensus 151 ~~Ya-~~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 151 WCYA-STNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp HHHH-HTT--TTS---HHHHHHHHHTTB-T
T ss_pred HHHH-HcCCCCCCCcCHHHHHHHHHHhccc
Confidence 4422 2223367789999999999987663
No 84
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=74.23 E-value=4.6 Score=39.37 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=35.9
Q ss_pred Cccccccc-CCchhhhh-----hhhc--cchHHHHHhhhcCCccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHH
Q psy2130 20 ERYFGLVN-GKTCKEKE-----DRIE--KSQPFWEQTSLQDKISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLIN 91 (470)
Q Consensus 20 ~~~~GL~N-GNtCy~Ns-----Q~L~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd 91 (470)
.+++=|+= -|+||+|| |.+- +.+|.+..+...- ..|.+..|+.-+- . ......|+--||+++|..||+
T Consensus 100 ~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~~l~~aw~~f--~~G~~~~fVa~~Y-a-~~~~~~G~~gDa~~~L~~ll~ 175 (320)
T PF08715_consen 100 NGFRVLKQSDNNCWVNAACLQLQALKIKFKSPGLDEAWNEF--KAGDPAPFVAWCY-A-STNAKKGDPGDAEYVLSKLLK 175 (320)
T ss_dssp TTEEEE---TTTHHHHHHHHHHTTST--BSSHHHHHHHHHH--HTT--HHHHHHHH-H-HTT--TTS---HHHHHHHHHT
T ss_pred CCEEEEEecCCCcHHHHHHHHHHhcCCccCCHHHHHHHHHH--hCCChHHHHHHHH-H-HcCCCCCCCcCHHHHHHHHHH
Confidence 46666888 99999999 6651 2222233222221 3344444443333 1 124677889999999999986
Q ss_pred HHHH
Q psy2130 92 HINE 95 (470)
Q Consensus 92 ~L~e 95 (470)
.++.
T Consensus 176 ~~~~ 179 (320)
T PF08715_consen 176 DADL 179 (320)
T ss_dssp TB-T
T ss_pred hccc
Confidence 6553
No 85
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=70.80 E-value=1.6 Score=38.28 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=16.6
Q ss_pred Cccccccc-CCchhhhh--hhh-ccchHHHHHhhh
Q psy2130 20 ERYFGLVN-GKTCKEKE--DRI-EKSQPFWEQTSL 50 (470)
Q Consensus 20 ~~~~GL~N-GNtCy~Ns--Q~L-~~~~~f~~~~~~ 50 (470)
..+.|+.| +|||++|| |.+ +.-.+||+....
T Consensus 31 ~eft~~PN~~dnCWlNaL~QL~~~~d~~~Fd~~Y~ 65 (193)
T PF05408_consen 31 MEFTGLPNNHDNCWLNALLQLFRYVDEPFFDWYYD 65 (193)
T ss_dssp -EEE----SSSTHHHHHHHHHHHHHT-GTTHHHHT
T ss_pred eEEecCCCCCCChHHHHHHHHHHHcCcccchhhcC
Confidence 45679999 99999999 766 223444554443
No 86
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=70.27 E-value=6.5 Score=34.18 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=30.3
Q ss_pred EEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceee--echhhhhhhc
Q psy2130 385 LVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDK--IDQSTIEDFF 431 (470)
Q Consensus 385 L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~--v~~~~v~~~~ 431 (470)
..|+||+.+. |++|..|-++.||-+|=..-.+ ++...+..++
T Consensus 99 ~~gfI~N~~~-----HWf~iRki~~~wyNLDS~l~~P~~i~~~~l~~fL 142 (157)
T PF02099_consen 99 EFGFICNLSR-----HWFAIRKIGGQWYNLDSKLKEPELISDFYLSAFL 142 (157)
T ss_dssp SSEEEEECTT-----EEEEEEEETTEEEEECTTTSS-EEE-HHHHHHHH
T ss_pred ceEEEeccCc-----ceEEEEeeCCeeEeccCCCCCCcccCHHHHHHHH
Confidence 4688998666 9999999999999999865544 4444444433
No 87
>PF14353 CpXC: CpXC protein
Probab=58.17 E-value=5.9 Score=33.09 Aligned_cols=51 Identities=16% Similarity=0.387 Sum_probs=27.8
Q ss_pred ceeccccCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCcccccccc
Q psy2130 143 ETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQ 203 (470)
Q Consensus 143 ~~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~ 203 (470)
+++|+.|++.... +.+. +++......+.+-| +. ..+ ..+.|+.||......
T Consensus 1 ~itCP~C~~~~~~-~v~~--~I~~~~~p~l~e~i---l~-g~l---~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 1 EITCPHCGHEFEF-EVWT--SINADEDPELKEKI---LD-GSL---FSFTCPSCGHKFRLE 51 (128)
T ss_pred CcCCCCCCCeeEE-EEEe--EEcCcCCHHHHHHH---Hc-CCc---CEEECCCCCCceecC
Confidence 4789999987332 1122 22222223333333 11 222 679999999976554
No 88
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=43.83 E-value=22 Score=33.21 Aligned_cols=76 Identities=20% Similarity=0.335 Sum_probs=45.7
Q ss_pred CchHHHHhhccccccceeccccCCccc-----ccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccc
Q psy2130 128 EPTWVHEIFQGILTSETKCLNCETVSS-----KDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEA 202 (470)
Q Consensus 128 ~~s~i~~~F~g~~~~~~~C~~C~~~s~-----~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~ 202 (470)
....+.++|.-.+.=.-.|..||+... +...|.++ +|.--.|.. ----.|..|+.+.+.
T Consensus 119 ~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv---~pdwhPLnA-------------~h~~pCn~C~~ksQ~ 182 (275)
T PF15499_consen 119 LDPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNV---IPDWHPLNA-------------VHFGPCNSCNSKSQR 182 (275)
T ss_pred cchHHHhHhheeeEEEEEccccCChhhhhheeeecccCCC---CCCCCcccc-------------cccCCCcccCChHHh
Confidence 345689999999999999999998732 22233322 222112211 022479999987765
Q ss_pred cCCCccccccccC------CCCCCCC
Q psy2130 203 QGPNISALEKEIG------PDRFPPN 222 (470)
Q Consensus 203 ~~~~~~~~~~~~~------~~~~~~~ 222 (470)
+ -+.+++..+ ++.||.|
T Consensus 183 r---kMvlekv~~vfmLHFVeGLP~n 205 (275)
T PF15499_consen 183 R---KMVLEKVPPVFMLHFVEGLPHN 205 (275)
T ss_pred H---hhhhhcCchhhhhhhhccCCcc
Confidence 5 455555443 4555554
No 89
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=40.13 E-value=29 Score=18.18 Aligned_cols=14 Identities=36% Similarity=0.783 Sum_probs=10.7
Q ss_pred EEecCCcEEEEeCc
Q psy2130 404 IVKSHDFWLLFDDD 417 (470)
Q Consensus 404 ~vr~~~~W~~~nD~ 417 (470)
+++.++.||.|++.
T Consensus 3 W~~~~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQDNGNWYYFDSD 16 (19)
T ss_dssp EEEETTEEEEETTT
T ss_pred CEEECCEEEEeCCC
Confidence 56677899999764
No 90
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=39.72 E-value=34 Score=23.38 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=25.8
Q ss_pred eeccccCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCcccc
Q psy2130 144 TKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASY 199 (470)
Q Consensus 144 ~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~ 199 (470)
.+|..||++..-.. .+..-.|+.....++ |. ..|.|+.|+..
T Consensus 2 y~C~~CgyiYd~~~--Gd~~~~i~pGt~f~~----------Lp--~~w~CP~C~a~ 43 (50)
T cd00730 2 YECRICGYIYDPAE--GDPDEGIPPGTPFED----------LP--DDWVCPVCGAG 43 (50)
T ss_pred cCCCCCCeEECCCC--CCcccCcCCCCCHhH----------CC--CCCCCCCCCCc
Confidence 47999998843221 233345555555554 32 46999999864
No 91
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=39.64 E-value=29 Score=23.40 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=21.0
Q ss_pred eeccccCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCcccc
Q psy2130 144 TKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASY 199 (470)
Q Consensus 144 ~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~ 199 (470)
.+|..|+++..-.. .+-.-.||.....++ |. ..|.|+.|+..
T Consensus 2 y~C~~CgyvYd~~~--Gd~~~~i~pGt~F~~----------Lp--~~w~CP~C~a~ 43 (47)
T PF00301_consen 2 YQCPVCGYVYDPEK--GDPENGIPPGTPFED----------LP--DDWVCPVCGAP 43 (47)
T ss_dssp EEETTTSBEEETTT--BBGGGTB-TT--GGG----------S---TT-B-TTTSSB
T ss_pred cCCCCCCEEEcCCc--CCcccCcCCCCCHHH----------CC--CCCcCcCCCCc
Confidence 57999998832211 222234554444443 32 45999999864
No 92
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=32.47 E-value=2.1e+02 Score=24.20 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=52.6
Q ss_pred hhhhcCCCceEEEEeeeeeeecc---ccccccccceEecCcccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEE
Q psy2130 328 CMKVKKLPMILALHLKRFKYMDK---MNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISI 404 (470)
Q Consensus 328 ~~~i~~lP~~L~i~l~R~~~~~~---~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~ 404 (470)
...+..-..-+.+-++||.|... .....+...-..|...+.+....-+..+++....|-||-.+.|. .-+||-.-.
T Consensus 27 Di~~~~~~rrf~l~~NRF~WE~~~~~~~~~eR~rs~L~f~~V~~Vks~gi~~~~~d~vLsLLai~fe~~e-~p~G~v~L~ 105 (138)
T PF11164_consen 27 DIRWLPKERRFALLLNRFRWEDAERRGRPPERVRSALRFDRVLAVKSRGIDRKDPDAVLSLLAITFEPGE-APAGHVLLT 105 (138)
T ss_pred heeEcccCCEEEEEeeeeEeccCccCCCCCcEEEEEEEEccEeeeeecCCCCCCCCceEEEEEEEEEeCC-CCCcEEEEE
Confidence 34444556679999999999865 22345555556677666655444444567789999999999987 667775544
Q ss_pred Ee
Q psy2130 405 VK 406 (470)
Q Consensus 405 vr 406 (470)
.-
T Consensus 106 fA 107 (138)
T PF11164_consen 106 FA 107 (138)
T ss_pred EC
Confidence 33
No 93
>KOG2935|consensus
Probab=30.76 E-value=7 Score=36.02 Aligned_cols=59 Identities=17% Similarity=0.379 Sum_probs=40.9
Q ss_pred EEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceee--echhhhhhhcCCCCCCCCCCCcEEEEEEEecCCC
Q psy2130 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDK--IDQSTIEDFFGLTSDHQKSSETGYILFYQSRDST 455 (470)
Q Consensus 386 ~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~--v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~~~ 455 (470)
.|.|||+-. ||++..|-+++||.+|--.--+ ++..-+.-++- ..+..+|-+|-.+-+..
T Consensus 104 rafICnl~e-----HWF~iRKfg~qWfnlnSllagPellSdtyls~FL~------qlq~egySIFVVkG~lP 164 (315)
T KOG2935|consen 104 RAFICNLKE-----HWFTIRKFGKQWFNLNSLLAGPELLSDTYLSAFLA------QLQQEGYSIFVVKGDLP 164 (315)
T ss_pred hhhhhcchh-----hhhhHhhhcchhccchhhhcchHHHHHHHHHHHHH------HHHhCCeeEEEEecCCC
Confidence 577999877 9999999999999998754333 22222222221 24678999999887655
No 94
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=29.88 E-value=98 Score=32.71 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=18.0
Q ss_pred CcchhHHHHHHHhhc--hHHHHHHh
Q psy2130 233 NTCYSNSVLQALYFC--KPFRDRVL 255 (470)
Q Consensus 233 ntCy~Ns~LQ~L~~~--~~~~~~i~ 255 (470)
.+||+-.+|-|||.. |.+.+.++
T Consensus 245 s~~~IHPIl~ALFg~KlpiLE~~~v 269 (666)
T PF03292_consen 245 STNYIHPILVALFGIKLPILENHFV 269 (666)
T ss_pred CcCcccHHHHHHhccchhHHHHHHh
Confidence 579999999999976 66766554
No 95
>KOG3556|consensus
Probab=25.99 E-value=85 Score=32.47 Aligned_cols=65 Identities=26% Similarity=0.504 Sum_probs=41.7
Q ss_pred CcceEEEEEEEeecCCCCCcEEEEEEec---CCcEEEEeC-------------cceeeechhhhhhhcCCCC-C------
Q psy2130 380 DRMYNLVAVVIHCGSGPNRGHYISIVKS---HDFWLLFDD-------------DVVDKIDQSTIEDFFGLTS-D------ 436 (470)
Q Consensus 380 ~~~Y~L~avV~H~G~~~~~GHY~a~vr~---~~~W~~~nD-------------~~V~~v~~~~v~~~~g~~~-~------ 436 (470)
....+|.+|+| ....||+++++- ...|+.||. ..|++. -+|.+.+|+.- +
T Consensus 625 ~~~~el~~~l~-----~~t~~~~~~~~~~~~~~a~lf~~~~~~r~~gqn~~~~~q~~~~--~~v~e~l~~s~~~~h~ldr 697 (724)
T KOG3556|consen 625 CQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNGFNIPQVTPC--PEVGEYLKMSLEDLHSLDR 697 (724)
T ss_pred hhhHhhhhhhh-----ccccccccHHHhccchhhhhhhcchhhhhcccccCCCccccCC--cchhhHhhcchhhhHHHHH
Confidence 35578999999 556699999984 357887754 333322 24555555431 0
Q ss_pred -----CCCCCCcEEEEEEEe
Q psy2130 437 -----HQKSSETGYILFYQS 451 (470)
Q Consensus 437 -----~~~~~~~aYiLfY~r 451 (470)
.......|||++|+-
T Consensus 698 ~i~~~~~~~~~~~~~~m~q~ 717 (724)
T KOG3556|consen 698 RIQGCARRLLCDAYMCMYQS 717 (724)
T ss_pred HHHHHHHHHhccccceeeec
Confidence 122467899999985
No 96
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=25.42 E-value=29 Score=23.72 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=13.9
Q ss_pred ccc-CCchhhhh-hhhccc
Q psy2130 25 LVN-GKTCKEKE-DRIEKS 41 (470)
Q Consensus 25 L~N-GNtCy~Ns-Q~L~~~ 41 (470)
+.- .--|.||| |++|.+
T Consensus 32 ~~Tis~eC~~ns~q~~ftC 50 (51)
T PF04604_consen 32 IKTISHECRMNSWQFIFTC 50 (51)
T ss_pred eeecccccccccHHHHhcc
Confidence 444 89999999 999865
No 97
>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification. ; InterPro: IPR005074 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences defined by this cysteine peptidase domain belong to the MEROPS peptidase family C39 (clan CA). It is found in a wide range of ABC transporters, which are maturation proteases for peptide bacteriocins, the proteolytic domain residing in the N-terminal region of the protein []. A number of the proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites, suggesting that a different processing enzyme is involved. ; GO: 0005524 ATP binding, 0008233 peptidase activity, 0006508 proteolysis, 0016021 integral to membrane; PDB: 3K8U_A 3B79_A.
Probab=25.23 E-value=3.7e+02 Score=21.72 Aligned_cols=45 Identities=27% Similarity=0.377 Sum_probs=29.7
Q ss_pred CCcEEEEEEecCCcEEEEeCc--ceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEec
Q psy2130 397 NRGHYISIVKSHDFWLLFDDD--VVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSR 452 (470)
Q Consensus 397 ~~GHY~a~vr~~~~W~~~nD~--~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~ 452 (470)
..|||+...+.++..+.+-|- -...++.+++.+. .+.++|+-++.
T Consensus 83 ~~~h~vVi~~~~~~~~~i~dP~~g~~~~~~~~f~~~-----------w~G~~l~~~~~ 129 (131)
T PF03412_consen 83 KDGHFVVIYKIDDGRVLIYDPKKGKIKLSKEEFEEI-----------WTGEVLLIKPS 129 (131)
T ss_dssp CCCEEEEEEEECCCEEEECCTTTCEEEEEHHHHHHH-----------EEEEEEEEEE-
T ss_pred cCcceEEEEeEcCcEEEEEeCCCCeEEEeHHHHHhh-----------CCCEEEEEEeC
Confidence 567999998877666666663 2345666777543 46888887764
No 98
>cd02418 Peptidase_C39B A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=24.03 E-value=3.5e+02 Score=21.91 Aligned_cols=45 Identities=27% Similarity=0.368 Sum_probs=28.9
Q ss_pred CCCcEEEEEEecCCcEEEEeCc--ceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEe
Q psy2130 396 PNRGHYISIVKSHDFWLLFDDD--VVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQS 451 (470)
Q Consensus 396 ~~~GHY~a~vr~~~~W~~~nD~--~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r 451 (470)
...|||+...+.++.++.+.|- ....++.+++.+ ....++++-++
T Consensus 87 ~~~~~~~Vl~~~~~~~~~i~dp~~~~~~~~~~ef~~-----------~w~g~~l~~~~ 133 (136)
T cd02418 87 WKLNHYVVVYKIKKKKILIADPAVGITKISKEEFEK-----------EWTGVALFLEP 133 (136)
T ss_pred CCCCeEEEEEEEcCCEEEEECCCCCCEEeeHHHHHh-----------hCeEEEEEEec
Confidence 4678999999977777777764 223456666642 33556666554
No 99
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=23.98 E-value=33 Score=29.96 Aligned_cols=42 Identities=21% Similarity=0.465 Sum_probs=24.5
Q ss_pred eeccccCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCcccccccc
Q psy2130 144 TKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQ 203 (470)
Q Consensus 144 ~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~ 203 (470)
..|+.|+....+ ..+..+|| ||+.-.+ ..+.|+.||-+..-.
T Consensus 2 s~Cp~C~~~~~~----~~~~~~IP-----------~F~evii---~sf~C~~CGyk~~ev 43 (161)
T PF03367_consen 2 SLCPNCGENGTT----RILLTDIP-----------YFKEVII---MSFECEHCGYKNNEV 43 (161)
T ss_dssp EE-TTTSSCCEE----EEEEEEET-----------TTEEEEE---EEEE-TTT--EEEEE
T ss_pred CcCCCCCCCcEE----EEEEEcCC-----------CCceEEE---EEeECCCCCCEeeeE
Confidence 579999987543 22566777 4555555 568999999765443
No 100
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=22.04 E-value=50 Score=25.54 Aligned_cols=13 Identities=23% Similarity=0.600 Sum_probs=9.6
Q ss_pred cccceeccccCCc
Q psy2130 140 LTSETKCLNCETV 152 (470)
Q Consensus 140 ~~~~~~C~~C~~~ 152 (470)
+...-+|..||++
T Consensus 55 lv~Pa~CkkCGfe 67 (97)
T COG3357 55 LVRPARCKKCGFE 67 (97)
T ss_pred EecChhhcccCcc
Confidence 3444689999987
No 101
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=21.46 E-value=47 Score=18.98 Aligned_cols=13 Identities=23% Similarity=0.800 Sum_probs=10.4
Q ss_pred CCCccccCCcccc
Q psy2130 187 SDNKFKCDNCASY 199 (470)
Q Consensus 187 ~~~~~~C~~C~~~ 199 (470)
++..|.|+.|++.
T Consensus 11 ~~k~~~C~~C~k~ 23 (26)
T PF13465_consen 11 GEKPYKCPYCGKS 23 (26)
T ss_dssp SSSSEEESSSSEE
T ss_pred CCCCCCCCCCcCe
Confidence 4577999999874
No 102
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=21.03 E-value=71 Score=22.19 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=8.1
Q ss_pred ccccCCccccc
Q psy2130 190 KFKCDNCASYQ 200 (470)
Q Consensus 190 ~~~C~~C~~~~ 200 (470)
..+|++|++..
T Consensus 28 PlyCpKCK~Et 38 (55)
T PF14205_consen 28 PLYCPKCKQET 38 (55)
T ss_pred cccCCCCCceE
Confidence 36899998754
Done!