Query psy2130
Match_columns 470
No_of_seqs 243 out of 2097
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 16:50:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 1.3E-59 4.3E-64 470.9 21.9 298 18-456 4-362 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 1.4E-58 4.9E-63 466.9 20.0 294 19-453 59-396 (396)
3 3i3t_A Ubiquitin carboxyl-term 100.0 2.5E-58 8.5E-63 459.4 15.0 296 20-455 1-353 (355)
4 3nhe_A Ubiquitin carboxyl-term 100.0 3.1E-58 1.1E-62 457.5 15.4 297 18-456 5-346 (348)
5 1nb8_A Ubiquitin carboxyl-term 100.0 6.3E-57 2.1E-61 448.4 21.1 285 19-457 3-319 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 4.1E-56 1.4E-60 451.3 18.1 299 18-457 10-398 (404)
7 3mhs_A Ubiquitin carboxyl-term 100.0 2.3E-54 8E-59 447.2 21.7 285 18-454 137-475 (476)
8 1vjv_A Ubiquitin carboxyl-term 100.0 2.4E-54 8.1E-59 439.6 17.6 272 18-454 20-415 (415)
9 2f1z_A Ubiquitin carboxyl-term 100.0 1.5E-53 5.2E-58 445.1 22.4 286 19-458 172-489 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 2.4E-51 8.2E-56 446.1 16.6 198 19-373 341-622 (854)
11 2vhf_A Ubiquitin carboxyl-term 100.0 3.9E-29 1.3E-33 239.7 10.8 177 224-416 8-308 (374)
12 3nhe_A Ubiquitin carboxyl-term 99.7 4E-17 1.4E-21 161.2 11.2 107 220-327 4-115 (348)
13 2y6e_A Ubiquitin carboxyl-term 99.7 3.5E-17 1.2E-21 163.0 10.9 107 220-328 3-116 (367)
14 3i3t_A Ubiquitin carboxyl-term 99.7 6.1E-17 2.1E-21 160.3 9.3 103 224-327 2-108 (355)
15 1vjv_A Ubiquitin carboxyl-term 99.7 1.3E-16 4.5E-21 161.5 11.0 106 220-327 19-140 (415)
16 2gfo_A Ubiquitin carboxyl-term 99.7 1.3E-16 4.4E-21 160.3 9.8 104 222-327 59-169 (396)
17 2ayn_A Ubiquitin carboxyl-term 99.7 1.3E-16 4.5E-21 161.0 9.7 103 222-327 11-124 (404)
18 1nb8_A Ubiquitin carboxyl-term 99.7 2.8E-16 9.5E-21 155.6 11.2 100 222-326 3-102 (353)
19 3ihp_A Ubiquitin carboxyl-term 99.6 2E-15 6.7E-20 164.4 12.7 108 221-328 340-470 (854)
20 2f1z_A Ubiquitin carboxyl-term 99.6 3.7E-15 1.3E-19 155.2 10.2 103 219-326 169-271 (522)
21 3mhs_A Ubiquitin carboxyl-term 99.6 7.2E-15 2.5E-19 151.4 10.5 106 221-326 137-256 (476)
22 2vhf_A Ubiquitin carboxyl-term 99.0 1.6E-11 5.4E-16 118.0 -0.9 76 20-96 7-114 (374)
23 1qmy_A Protease, leader protea 94.5 0.031 1.1E-06 45.2 3.9 38 384-425 108-145 (167)
24 3mp2_A Non-structural protein 94.0 0.056 1.9E-06 47.6 4.8 37 386-425 161-197 (211)
25 3o65_A Putative ataxin-3-like 61.7 5.6 0.00019 34.4 3.3 60 385-455 110-171 (191)
26 2fe8_A PP1AB, ORF1AB, replicas 61.5 9.4 0.00032 35.8 5.0 37 386-424 260-296 (315)
27 3mp2_A Non-structural protein 57.3 12 0.0004 32.9 4.6 64 20-90 11-80 (211)
28 2ww6_A Fibritin, T4 fibritin; 49.1 7 0.00024 21.7 1.2 14 403-416 12-25 (27)
29 3a43_A HYPD, hydrogenase nicke 47.8 12 0.00042 30.5 3.1 53 139-201 66-118 (139)
30 2fe8_A PP1AB, ORF1AB, replicas 43.8 21 0.00073 33.4 4.4 16 74-89 158-173 (315)
31 6rxn_A Rubredoxin; electron tr 38.6 25 0.00085 22.6 2.8 12 142-153 3-14 (46)
32 1s24_A Rubredoxin 2; electron 31.6 26 0.00089 26.0 2.3 48 138-199 30-77 (87)
33 2kn9_A Rubredoxin; metalloprot 28.6 35 0.0012 24.9 2.5 45 141-199 25-69 (81)
34 1e8j_A Rubredoxin; iron-sulfur 28.3 48 0.0016 21.9 2.9 43 143-199 3-45 (52)
35 1yuz_A Nigerythrin; rubrythrin 27.7 83 0.0028 27.3 5.3 22 132-153 160-181 (202)
36 2v3b_B Rubredoxin 2, rubredoxi 25.5 45 0.0015 22.3 2.4 43 143-199 3-45 (55)
37 1qmy_A Protease, leader protea 24.8 23 0.00078 28.7 1.0 31 21-51 12-46 (167)
38 3b79_A Toxin secretion ATP-bin 23.4 2.2E+02 0.0075 21.8 6.9 43 398-451 78-126 (129)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-59 Score=470.89 Aligned_cols=298 Identities=26% Similarity=0.446 Sum_probs=239.4
Q ss_pred CCCccccccc-CCchhhhh--hhhccchHHHHHhhhc-------------------------------CCccchhhHHHH
Q psy2130 18 PNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ-------------------------------DKISLGWECSLI 63 (470)
Q Consensus 18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~-------------------------------~~~~~~~~~~~~ 63 (470)
...+++||.| |||||||| |||+++|+|...+... .......+..|+
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence 3467999999 99999999 9999999993322110 011222333677
Q ss_pred HHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCC-----CCCCCCCCCCCchHHHHhhcc
Q psy2130 64 LELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGG-----GDNHSSSGFEEPTWVHEIFQG 138 (470)
Q Consensus 64 ~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~i~~~F~g 138 (470)
++++ ...+.|.+++||||||||.+|||.||+|++........... ..++.. ...|........++|.++|+|
T Consensus 84 ~~l~-~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~--~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G 160 (367)
T 2y6e_A 84 TQVG-RFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELK--DANGRPDAVVAKEAWENHRLRNDSVIVDTFHG 160 (367)
T ss_dssp HHHH-HHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCC--CCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred HHHH-HhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccc--cccCCchhHHHHHHHHHHHHhcCCccccccCc
Confidence 7777 67789999999999999999999999998754433211100 000000 000000011246789999999
Q ss_pred ccccceeccccCCcccccCCCcccccccCC-------------------CCCHHHHhccCCccccccCCCccccCCcccc
Q psy2130 139 ILTSETKCLNCETVSSKDEDFFDLQVDIKQ-------------------NTSITQCLRGFSSTETLCSDNKFKCDNCASY 199 (470)
Q Consensus 139 ~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~-------------------~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~ 199 (470)
+++++++|..|+++|.+.++|++|+|+||. ..+|++||+.|+.+|.+++++.|.|++|+.+
T Consensus 161 ~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~ 240 (367)
T 2y6e_A 161 LFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKH 240 (367)
T ss_dssp EEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEE
T ss_pred EEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCC
Confidence 999999999999999999999999999985 3689999999999999999999999999999
Q ss_pred ccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHH
Q psy2130 200 QEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNI 279 (470)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l 279 (470)
..+.
T Consensus 241 ~~a~---------------------------------------------------------------------------- 244 (367)
T 2y6e_A 241 QQAT---------------------------------------------------------------------------- 244 (367)
T ss_dssp ECCE----------------------------------------------------------------------------
T ss_pred ceEE----------------------------------------------------------------------------
Confidence 8888
Q ss_pred HhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccc
Q psy2130 280 ATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSH 359 (470)
Q Consensus 280 ~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~ 359 (470)
++..|.++|++|+|||+||.++.. ...|+..
T Consensus 245 -----------------------------------------------K~~~i~~lP~vL~i~LkRF~~~~~--~~~K~~~ 275 (367)
T 2y6e_A 245 -----------------------------------------------KKFDLWSLPKILVVHLKRFSYNRY--WRDKLDT 275 (367)
T ss_dssp -----------------------------------------------EEEEEEECCSEEEEEEECEEECSS--CEEECCC
T ss_pred -----------------------------------------------EEEEEecCCcEEEEEEeCeeecCc--cceecCc
Confidence 899999999999999999999753 3479999
Q ss_pred eEecCc-ccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCC
Q psy2130 360 RVVFPL-ELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSD 436 (470)
Q Consensus 360 ~v~fp~-~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~ 436 (470)
.|.||. .|||.+++.........|+|+|||+|.|. .++|||+||+|. +++||+|||+.|++|++++|
T Consensus 276 ~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v--------- 345 (367)
T 2y6e_A 276 VVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQI--------- 345 (367)
T ss_dssp CEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECS-SSSCEEEEEEECTTTCCEEEEETTEEEECCGGGT---------
T ss_pred eEEecCCcCChhhhccCCCCCCceEEEEEEeecCCC-CCCCeeeEEEEcCCCCeEEEECCCCceECCHHHc---------
Confidence 999997 79999998776667789999999999998 899999999997 58999999999999999888
Q ss_pred CCCCCCcEEEEEEEecCCCc
Q psy2130 437 HQKSSETGYILFYQSRDSTD 456 (470)
Q Consensus 437 ~~~~~~~aYiLfY~r~~~~~ 456 (470)
....||||||+|++...
T Consensus 346 ---~~~~aYiLfY~r~~~~~ 362 (367)
T 2y6e_A 346 ---VTKAAYVLFYQRRDDEF 362 (367)
T ss_dssp ---SSTTEEEEEEEECCC--
T ss_pred ---CCCCcEEEEEEEcCCCC
Confidence 46899999999988653
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=1.4e-58 Score=466.85 Aligned_cols=294 Identities=29% Similarity=0.477 Sum_probs=236.7
Q ss_pred CCccccccc-CCchhhhh--hhhccchHHHHHhhhc-------------------------------CCccchhhHHHHH
Q psy2130 19 NERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ-------------------------------DKISLGWECSLIL 64 (470)
Q Consensus 19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~-------------------------------~~~~~~~~~~~~~ 64 (470)
..+++||.| |||||||| |||+++|+|...+... .......+..|++
T Consensus 59 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~~ 138 (396)
T 2gfo_A 59 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKI 138 (396)
T ss_dssp STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHH
T ss_pred CCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHHH
Confidence 468999999 99999999 9999999993322110 0001122336777
Q ss_pred HhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCC-----CCCCCCCCCCCchHHHHhhccc
Q psy2130 65 ELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGG-----GDNHSSSGFEEPTWVHEIFQGI 139 (470)
Q Consensus 65 ~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~i~~~F~g~ 139 (470)
+++ ...+.|.+++||||||||.+|||.||+|+.....+....... .+... ...|......+.++|.++|+|+
T Consensus 139 ~l~-~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~--~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~ 215 (396)
T 2gfo_A 139 TIG-KINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEEN--NDHLDDFKAAEHAWQKHKQLNESIIVALFQGQ 215 (396)
T ss_dssp HHH-HHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC-----------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEE
T ss_pred HHH-HhchhhcCCCCCChHHHHHHHHHHHHHHHhhhcccccccccc--ccccchhhHHHHHHHHhhhccCCccchhhCcE
Confidence 777 778899999999999999999999999987543221111000 00000 0000001123467899999999
Q ss_pred cccceeccccCCcccccCCCcccccccCC--CCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCC
Q psy2130 140 LTSETKCLNCETVSSKDEDFFDLQVDIKQ--NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPD 217 (470)
Q Consensus 140 ~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~--~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~ 217 (470)
++++++|..|++++.+.|+|++|+|+||. .++|++||+.|+.+|.+++++.|.|++|+.+..+.
T Consensus 216 l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~-------------- 281 (396)
T 2gfo_A 216 FKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSL-------------- 281 (396)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEE--------------
T ss_pred EEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceE--------------
Confidence 99999999999999999999999999997 47999999999999999999999999999998888
Q ss_pred CCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHH
Q psy2130 218 RFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITR 297 (470)
Q Consensus 218 ~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~ 297 (470)
T Consensus 282 -------------------------------------------------------------------------------- 281 (396)
T 2gfo_A 282 -------------------------------------------------------------------------------- 281 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCc-ccccccCCCCC
Q psy2130 298 LRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSDDA 376 (470)
Q Consensus 298 l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~-~ldl~~~~~~~ 376 (470)
++..|.++|++|+|||+||.+++. ...|+...|.||. .|||.+++...
T Consensus 282 -----------------------------k~~~i~~lP~vLiihLkRF~~~~~--~~~K~~~~v~fp~~~Ldl~~~~~~~ 330 (396)
T 2gfo_A 282 -----------------------------KKIEIWKLPPVLLVHLKRFSYDGR--WKQKLQTSVDFPLENLDLSQYVIGP 330 (396)
T ss_dssp -----------------------------EEEEEEECCSEEEEEECCEEECSS--SEEECCCEEECCSSCBCCGGGBCSC
T ss_pred -----------------------------EEEEEecCCcEEEEEecceeccCc--cceecCceEecchhhccccccccCC
Confidence 899999999999999999999753 3479999999996 69999998765
Q ss_pred CCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEecC
Q psy2130 377 VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRD 453 (470)
Q Consensus 377 ~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~ 453 (470)
......|+|+|||+|.| +.++|||+||+|. +++||+|||+.|++|++++| ...+||||||+|++
T Consensus 331 ~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v------------~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 331 KNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV------------KSSAAYILFYTSLG 396 (396)
T ss_dssp CSSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHH------------SCTTEEEEEEECC-
T ss_pred CCCCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHc------------CCCCceEEEEEEcC
Confidence 55678999999999999 5999999999996 48999999999999999988 47899999999975
No 3
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=2.5e-58 Score=459.40 Aligned_cols=296 Identities=28% Similarity=0.444 Sum_probs=230.5
Q ss_pred Cccccccc-CCchhhhh--hhhccchHHHHHh-----------------------------hhcCCccchhhHHHHHHhh
Q psy2130 20 ERYFGLVN-GKTCKEKE--DRIEKSQPFWEQT-----------------------------SLQDKISLGWECSLILELD 67 (470)
Q Consensus 20 ~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~-----------------------------~~~~~~~~~~~~~~~~~l~ 67 (470)
.|++||.| |||||||| |+|+++|+|...+ ..........+..|++++.
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 36899999 99999999 9999999992211 1111112334447777777
Q ss_pred cccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCC---CCCCCCC---------------CCCCCCCCCc
Q psy2130 68 LCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSA---PDGGGGD---------------NHSSSGFEEP 129 (470)
Q Consensus 68 ~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~---~~~~~~~---------------~~~~~~~~~~ 129 (470)
...+.|.+++||||||||.+|||.||+|++.............. +...... .|........
T Consensus 81 -~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T 3i3t_A 81 -KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERED 159 (355)
T ss_dssp -HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCC
T ss_pred -HhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccC
Confidence 77889999999999999999999999999755433211110000 0000000 0000011245
Q ss_pred hHHHHhhccccccceeccccCCcccccCCCcccccccCC------CCCHHHHhccCCccccccCCCccccCCcccccccc
Q psy2130 130 TWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ------NTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQ 203 (470)
Q Consensus 130 s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~------~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~ 203 (470)
++|.++|+|++.++++|..|++++.+.++|++|+|+||. ..+|++||+.|+++|.+++++.|.|++|+.+..+.
T Consensus 160 s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~ 239 (355)
T 3i3t_A 160 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRST 239 (355)
T ss_dssp SHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEE
T ss_pred CcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceE
Confidence 779999999999999999999999999999999999986 35999999999999999999999999999999888
Q ss_pred CCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCC
Q psy2130 204 GPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHK 283 (470)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~ 283 (470)
T Consensus 240 -------------------------------------------------------------------------------- 239 (355)
T 3i3t_A 240 -------------------------------------------------------------------------------- 239 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEec
Q psy2130 284 KKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVF 363 (470)
Q Consensus 284 ~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~f 363 (470)
++..|.++|++|+|||+||.++. ....|+...|.|
T Consensus 240 -------------------------------------------k~~~i~~lP~vL~i~lkRF~~~~--~~~~K~~~~v~f 274 (355)
T 3i3t_A 240 -------------------------------------------KKLTVQRFPRILVLHLNRFSASR--GSIKKSSVGVDF 274 (355)
T ss_dssp -------------------------------------------EEEEEEECCSEEEEEECCEECCS--SCCEECCCCCBC
T ss_pred -------------------------------------------EEEEcccCChheEEEhhheecCC--CCceECCcceeC
Confidence 89999999999999999999864 445799999999
Q ss_pred Cc-ccccccCCCCCCCCCcceEEEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCC
Q psy2130 364 PL-ELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSE 442 (470)
Q Consensus 364 p~-~ldl~~~~~~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~ 442 (470)
|. .||+.++.... .....|+|+|||+|.|. ..+|||+||+|..+.||+|||+.|++|++++| ...
T Consensus 275 p~~~l~l~~~~~~~-~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~W~~~nD~~V~~v~~~~v------------~~~ 340 (355)
T 3i3t_A 275 PLQRLSLGDFASDK-AGSPVYQLYALCNHSGS-VHYGHYTALCRCQTGWHVYNDSRVSPVSENQV------------ASS 340 (355)
T ss_dssp CSSCEECGGGBC-----CCEEEEEEEEEEEEE-TTEEEEEEEEEETTEEEEEETTEEEEECHHHH------------HTS
T ss_pred CccccCchhhccCC-CCCcceEEEEEEEecCC-CCCCeEEEEEEcCCeEEEEcCCCcEECCHHHc------------CCC
Confidence 95 59999887543 34578999999999996 99999999999999999999999999999988 367
Q ss_pred cEEEEEEEecCCC
Q psy2130 443 TGYILFYQSRDST 455 (470)
Q Consensus 443 ~aYiLfY~r~~~~ 455 (470)
+||||||+|++..
T Consensus 341 ~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 341 EGYVLFYQLMQEP 353 (355)
T ss_dssp CCSEEEEEEC---
T ss_pred CcEEEEEEeccCC
Confidence 9999999998754
No 4
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=3.1e-58 Score=457.46 Aligned_cols=297 Identities=26% Similarity=0.450 Sum_probs=237.8
Q ss_pred CCCccccccc-CCchhhhh--hhhccchHHHHHh------------------------------hhcCCccchhhHHHHH
Q psy2130 18 PNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQT------------------------------SLQDKISLGWECSLIL 64 (470)
Q Consensus 18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~------------------------------~~~~~~~~~~~~~~~~ 64 (470)
...+++||.| |||||||| |+|+++|+|...+ ..........+..|++
T Consensus 5 ~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~ 84 (348)
T 3nhe_A 5 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKT 84 (348)
T ss_dssp -CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHH
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHHH
Confidence 3468999999 99999999 9999999993221 1111112333447777
Q ss_pred HhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCC-----CCCCCCCCCCCCchHHHHhhccc
Q psy2130 65 ELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGG-----GGDNHSSSGFEEPTWVHEIFQGI 139 (470)
Q Consensus 65 ~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~i~~~F~g~ 139 (470)
++. ...+.|.+++||||||||.+|||.||+|+............. .+.. ....|........++|.++|+|+
T Consensus 85 ~l~-~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 161 (348)
T 3nhe_A 85 QIQ-RYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPEN--LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 161 (348)
T ss_dssp HHH-HHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCC--CTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred HHH-HhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccc--cccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence 777 777899999999999999999999999997543322111000 0000 00001111134467899999999
Q ss_pred cccceeccccCCcccccCCCcccccccCCC----CCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccC
Q psy2130 140 LTSETKCLNCETVSSKDEDFFDLQVDIKQN----TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIG 215 (470)
Q Consensus 140 ~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~----~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~ 215 (470)
+.++++|..|++++.+.++|++|+|+||.. .+|++||+.|+.+|.+++++.|.|++|+.+..+.
T Consensus 162 ~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~------------ 229 (348)
T 3nhe_A 162 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCI------------ 229 (348)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEE------------
T ss_pred EEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEE------------
Confidence 999999999999999999999999999973 5999999999999999999999999999998888
Q ss_pred CCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHH
Q psy2130 216 PDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFI 295 (470)
Q Consensus 216 ~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~ 295 (470)
T Consensus 230 -------------------------------------------------------------------------------- 229 (348)
T 3nhe_A 230 -------------------------------------------------------------------------------- 229 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCc-ccccccCCC
Q psy2130 296 TRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSD 374 (470)
Q Consensus 296 ~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~-~ldl~~~~~ 374 (470)
++..|.++|++|+|||+||.++. ....|+...|.||. .||+.++..
T Consensus 230 -------------------------------k~~~i~~lP~vL~i~lkRf~~~~--~~~~K~~~~v~fp~~~ldl~~~~~ 276 (348)
T 3nhe_A 230 -------------------------------KKFSIQRFPKILVLHLKRFSESR--IRTSKLTTFVNFPLRDLDLREFAS 276 (348)
T ss_dssp -------------------------------EEEEEEECCSEEEEEECCBCCCS--SCCCBCCCCEECCSSCEECGGGBC
T ss_pred -------------------------------EEEEeecCCceEEEEEEcccccC--CceeecCcceeccCCcCCHhhhcC
Confidence 88999999999999999998765 34589999999995 799999876
Q ss_pred CCCCCCcceEEEEEEEeecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEec
Q psy2130 375 DAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSR 452 (470)
Q Consensus 375 ~~~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~ 452 (470)
.. .....|+|+|||+|.|. ..+|||+||+|. +++||+|||+.|++|++++| ...+||||||+|+
T Consensus 277 ~~-~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v------------~~~~aY~LfY~r~ 342 (348)
T 3nhe_A 277 EN-TNHAVYNLYAVSNHSGT-TMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQV------------RTSDAYLLFYELA 342 (348)
T ss_dssp TT-CCCCEEEEEEEEEEEEC-SSCEEEEEEEECTTTCCEEEEETTEEEEECGGGT------------CCTTEEEEEEEEC
T ss_pred CC-CCCCcEEEEEEEEccCC-CCCcccEEEEccCCCCcEEEEeCCCceECCHHHc------------CCCCceEEEEEec
Confidence 53 34578999999999996 899999999997 68999999999999999988 4789999999999
Q ss_pred CCCc
Q psy2130 453 DSTD 456 (470)
Q Consensus 453 ~~~~ 456 (470)
+...
T Consensus 343 ~~~~ 346 (348)
T 3nhe_A 343 SPPS 346 (348)
T ss_dssp C---
T ss_pred CCCC
Confidence 8653
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=6.3e-57 Score=448.37 Aligned_cols=285 Identities=25% Similarity=0.437 Sum_probs=229.1
Q ss_pred CCccccccc-CCchhhhh--hhhccchHHHHHhhhcCC-----------------------ccchhhHHHHHHhhcccCC
Q psy2130 19 NERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDK-----------------------ISLGWECSLILELDLCSSD 72 (470)
Q Consensus 19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~-----------------------~~~~~~~~~~~~l~~~~~~ 72 (470)
..+++||.| |||||||| |||+++|+|...+..... .....+..+++++.+ +
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~---~ 79 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGW---E 79 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHTC---C
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCCcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcCC---C
Confidence 467999999 99999999 999999999443321100 011122355555542 6
Q ss_pred CCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCc
Q psy2130 73 EFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETV 152 (470)
Q Consensus 73 ~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~ 152 (470)
.|.++.||||||||.+|||.||+++.. ....++|.++|+|++.++++|..|++.
T Consensus 80 ~~~~~~QqDA~EFl~~LLd~L~~~~~~--------------------------~~~~s~i~~~F~g~~~~~i~C~~C~~~ 133 (353)
T 1nb8_A 80 TLDSFMQHDVQELCRVLLDNVENKMKG--------------------------TCVEGTIPKLFRGKMVSYIQCKEVDYR 133 (353)
T ss_dssp BTTTTTTSCHHHHHHHHHHHHHHHTTT--------------------------STTTTHHHHHHCEEEEEEEEESSSCCE
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhcC--------------------------CCccchhhhhceeEEEEEEEeccCCCe
Confidence 789999999999999999999998742 113568999999999999999999999
Q ss_pred ccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCC
Q psy2130 153 SSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFG 232 (470)
Q Consensus 153 s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~g 232 (470)
+.+.++|++|+|+||...+|++||..|+.+|.+++++.|.|+.|+. ..+.
T Consensus 134 s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~~-~~a~----------------------------- 183 (353)
T 1nb8_A 134 SDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGL-QEAE----------------------------- 183 (353)
T ss_dssp EEEEEEESCEEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGCE-ECEE-----------------------------
T ss_pred eceeeeeEEEEEEECCCcchHHHHHHhhCccccCCCccccCCcCcc-EeeE-----------------------------
Confidence 9999999999999999999999999999999999999999999964 4455
Q ss_pred CcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCcccccc
Q psy2130 233 NTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQD 312 (470)
Q Consensus 233 ntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqD 312 (470)
T Consensus 184 -------------------------------------------------------------------------------- 183 (353)
T 1nb8_A 184 -------------------------------------------------------------------------------- 183 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-CCCCcceEEEEEEEe
Q psy2130 313 AHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA-VNPDRMYNLVAVVIH 391 (470)
Q Consensus 313 a~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~-~~~~~~Y~L~avV~H 391 (470)
++..|.++|++|+|||+||.++...+...|+...|.||+.|||.+++... ......|+|+|||+|
T Consensus 184 --------------k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H 249 (353)
T 1nb8_A 184 --------------KGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVH 249 (353)
T ss_dssp --------------EEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEE
T ss_pred --------------EEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEE
Confidence 78899999999999999999886555568999999999999999987653 234678999999999
Q ss_pred ecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhh-hhcCCCCCC--CCCCCcEEEEEEEecCCCcc
Q psy2130 392 CGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIE-DFFGLTSDH--QKSSETGYILFYQSRDSTDA 457 (470)
Q Consensus 392 ~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~-~~~g~~~~~--~~~~~~aYiLfY~r~~~~~~ 457 (470)
.|. ..+|||+||+|. +++||+|||+.|++|++++|. ..+|+..+. ...+.+||||||+|++..+.
T Consensus 250 ~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~~~~ 319 (353)
T 1nb8_A 250 SGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLSE 319 (353)
T ss_dssp ESS-TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTTHHH
T ss_pred eCC-CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECchhhh
Confidence 998 899999999995 689999999999999988774 466653210 01257899999999987554
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=4.1e-56 Score=451.28 Aligned_cols=299 Identities=24% Similarity=0.323 Sum_probs=230.7
Q ss_pred CCCccccccc-CCchhhhh--hhhccchHHHHHhhhcCC----------------------------ccchhhHHHHHHh
Q psy2130 18 PNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDK----------------------------ISLGWECSLILEL 66 (470)
Q Consensus 18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~----------------------------~~~~~~~~~~~~l 66 (470)
....++||.| |||||||| |||+++|+|...+..... .....+..|+++|
T Consensus 10 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l 89 (404)
T 2ayn_A 10 AMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFL 89 (404)
T ss_dssp -CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHH
T ss_pred ccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcCChHHHHHHH
Confidence 3568999999 99999999 999999999443322111 0122233677777
Q ss_pred hcccCCCCC------CcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhcccc
Q psy2130 67 DLCSSDEFD------NYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGIL 140 (470)
Q Consensus 67 ~~~~~~~f~------~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~ 140 (470)
+ ...+.|. ++.||||||||.+|||.||+++........ .+......|........++|.++|+|++
T Consensus 90 ~-~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~-------~e~~~~~~~~~~~~~~~s~i~~~F~G~l 161 (404)
T 2ayn_A 90 H-MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSV-------KETDSSSASAATPSKKKSLIDQFFGVEF 161 (404)
T ss_dssp H-HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC-------------------------CCHHHHHTCEEE
T ss_pred H-HhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcc-------cccchhhhhhhhccccCchhhhhccEEE
Confidence 7 6677776 589999999999999999999854321110 0011112233334456789999999999
Q ss_pred ccceeccccCCcc--cccCCCcccccccCCC-CCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCC
Q psy2130 141 TSETKCLNCETVS--SKDEDFFDLQVDIKQN-TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPD 217 (470)
Q Consensus 141 ~~~~~C~~C~~~s--~~~~~f~~Lsl~i~~~-~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~ 217 (470)
.++++|..|++++ .+.++|++|+|+||.. .+|++||+.|+.++ + .+.|+.|+....+.
T Consensus 162 ~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~-l----~~~c~~c~~~~~~~-------------- 222 (404)
T 2ayn_A 162 ETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEE-I----TKQSPTLQRNALYI-------------- 222 (404)
T ss_dssp EEEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEEC-C----CCEETTTTEECCEE--------------
T ss_pred EEEEEecCCCCccCceeeccCceEEeecCCCcccHHHHHHHhcccc-e----eecchhhCCcccee--------------
Confidence 9999999999994 7999999999999975 68999999988743 3 48999999988777
Q ss_pred CCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHH
Q psy2130 218 RFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITR 297 (470)
Q Consensus 218 ~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~ 297 (470)
T Consensus 223 -------------------------------------------------------------------------------- 222 (404)
T 2ayn_A 223 -------------------------------------------------------------------------------- 222 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-
Q psy2130 298 LRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA- 376 (470)
Q Consensus 298 l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~- 376 (470)
++..|.++|++|+|||+||.++...+...|+...|.||..|||.+++...
T Consensus 223 -----------------------------k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~ 273 (404)
T 2ayn_A 223 -----------------------------KSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPEL 273 (404)
T ss_dssp -----------------------------EEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHH
T ss_pred -----------------------------eeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhh
Confidence 88999999999999999999987666668999999999999998876421
Q ss_pred ------------------------------------------------CCCCcceEEEEEEEeecCCCCCcEEEEEEec-
Q psy2130 377 ------------------------------------------------VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS- 407 (470)
Q Consensus 377 ------------------------------------------------~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~- 407 (470)
......|+|+|||+|.|.++++|||+||+|.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~ 353 (404)
T 2ayn_A 274 QEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRK 353 (404)
T ss_dssp HHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEE
T ss_pred hhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECC
Confidence 2345889999999999977999999999998
Q ss_pred CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEecCCCcc
Q psy2130 408 HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRDSTDA 457 (470)
Q Consensus 408 ~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~~~~~ 457 (470)
+++||+|||+.|++|++++|....|+. .+.+||||||+|++....
T Consensus 354 ~~~W~~fnD~~V~~v~~~~v~~~~~g~-----~~~~aYiLfY~r~~~~~~ 398 (404)
T 2ayn_A 354 QDEWIKFDDDKVSIVTPEDILRLSGGG-----DWHIAYVLLYGPRRVEIM 398 (404)
T ss_dssp TTEEEEEBTTBCCCBCHHHHGGGGSSS-----SSCEEEEEEEECC-----
T ss_pred CCeEEEeecccceecCHHHHHhhhCCC-----CCceEEEEEEEecCCCCC
Confidence 899999999999999999997655442 367999999999987543
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=2.3e-54 Score=447.20 Aligned_cols=285 Identities=30% Similarity=0.514 Sum_probs=232.6
Q ss_pred CCCccccccc-CCchhhhh--hhhccchHHHHHhhhc-----------------------------CC-----------c
Q psy2130 18 PNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQ-----------------------------DK-----------I 54 (470)
Q Consensus 18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~-----------------------------~~-----------~ 54 (470)
...|++||.| |||||||| |+|+++|+|...+... .. .
T Consensus 137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 216 (476)
T 3mhs_A 137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTN 216 (476)
T ss_dssp GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCC
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhccccccccccccccc
Confidence 4578999999 99999999 9999999993222110 00 0
Q ss_pred cchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHH
Q psy2130 55 SLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHE 134 (470)
Q Consensus 55 ~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~ 134 (470)
.......++..++ +..+.|.+++||||||||.+|||.||+++.......... +........++|.+
T Consensus 217 ~~~~~~~~l~~~~-~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~-------------~~~~~~~~~s~i~~ 282 (476)
T 3mhs_A 217 RQTGFIYLLTCAW-KINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEV-------------SRANNKQCECIVHT 282 (476)
T ss_dssp SCHHHHHHHHHHH-HHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC--------------------CCCSCCSHHHH
T ss_pred CcchHHHHHHHHH-HhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccc-------------cccccccCCCccee
Confidence 0000113444444 677899999999999999999999999987554321110 11122346789999
Q ss_pred hhccccccceeccccCCccc-ccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccc
Q psy2130 135 IFQGILTSETKCLNCETVSS-KDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKE 213 (470)
Q Consensus 135 ~F~g~~~~~~~C~~C~~~s~-~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~ 213 (470)
+|+|++.++++|..|++++. +.++|++|+|+||...+|++||+.|+++|.+++ +.|.|++|+.+..+.
T Consensus 283 ~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~-~~~~C~~C~~~~~a~---------- 351 (476)
T 3mhs_A 283 VFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKD-FNYHCGECNSTQDAI---------- 351 (476)
T ss_dssp HSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSS-CCCEETTTTEECCCE----------
T ss_pred ecceEEEEEEEECCCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccC-CCCcCCccCCcccEE----------
Confidence 99999999999999999974 499999999999999999999999999999975 449999999998888
Q ss_pred cCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHH
Q psy2130 214 IGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKK 293 (470)
Q Consensus 214 ~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~ 293 (470)
T Consensus 352 -------------------------------------------------------------------------------- 351 (476)
T 3mhs_A 352 -------------------------------------------------------------------------------- 351 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCC
Q psy2130 294 FITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLS 373 (470)
Q Consensus 294 ~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~ 373 (470)
++..|.++|++|+|+|+||.++.. +...|+...|.||+.|||.++.
T Consensus 352 ---------------------------------k~~~i~~lP~vL~i~LkRF~~~~~-~~~~K~~~~V~fP~~Ldl~~~~ 397 (476)
T 3mhs_A 352 ---------------------------------KQLGIHKLPSVLVLQLKRFEHLLN-GSNRKLDDFIEFPTYLNMKNYC 397 (476)
T ss_dssp ---------------------------------EEEEEEEBCSEEEEEECCEEECTT-SCEEECCCCCBCCSEEECGGGB
T ss_pred ---------------------------------EEEEcccCCcceEEEeeeccccCC-CCeEECCEEEcCCCeeechhhc
Confidence 889999999999999999998643 3458999999999999999887
Q ss_pred CCCC---------CCCcceEEEEEEEeecCCCCCcEEEEEEec-CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCc
Q psy2130 374 DDAV---------NPDRMYNLVAVVIHCGSGPNRGHYISIVKS-HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSET 443 (470)
Q Consensus 374 ~~~~---------~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~-~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~ 443 (470)
.... .....|+|+|||+|.|. .++|||++|+|. +++||+|||+.|++|++++| ...+
T Consensus 398 ~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v------------~~~~ 464 (476)
T 3mhs_A 398 STKEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSISQEEV------------LKEQ 464 (476)
T ss_dssp SCCBCCC--CCCBCCCEEEEEEEEEEEEEC-SSSEEEEEEEECTTSCEEEEETTEEEEECHHHH------------TTSC
T ss_pred CcccccccccccCCCCCcEEEEEEEEeCCC-CCCCceEEEEECCCCcEEEEeCCceEECCHHHh------------ccCC
Confidence 6532 24578999999999997 999999999996 68999999999999999998 4689
Q ss_pred EEEEEEEecCC
Q psy2130 444 GYILFYQSRDS 454 (470)
Q Consensus 444 aYiLfY~r~~~ 454 (470)
||||||+|++.
T Consensus 465 aYiLfY~r~~~ 475 (476)
T 3mhs_A 465 AYLLFYTIRQV 475 (476)
T ss_dssp EEEEEEEEEEE
T ss_pred cEEEEEEEecC
Confidence 99999999874
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=2.4e-54 Score=439.61 Aligned_cols=272 Identities=22% Similarity=0.333 Sum_probs=221.1
Q ss_pred CCCccccccc-CCchhhhh--hhhccchHHHHHhhhcCC---------------------------------ccchhhHH
Q psy2130 18 PNERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDK---------------------------------ISLGWECS 61 (470)
Q Consensus 18 ~~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~---------------------------------~~~~~~~~ 61 (470)
...+++||.| |||||||| |||+++|+|...+..... .....+..
T Consensus 20 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~ 99 (415)
T 1vjv_A 20 FAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVV 99 (415)
T ss_dssp CCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHH
T ss_pred cCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHHH
Confidence 3568999999 99999999 999999999333321110 02223336
Q ss_pred HHHHhhcccCCCCC-------CcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHH
Q psy2130 62 LILELDLCSSDEFD-------NYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHE 134 (470)
Q Consensus 62 ~~~~l~~~~~~~f~-------~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~ 134 (470)
|+++|+ ...+.|. ++.||||||||.+||+.|++++.. ++|.+
T Consensus 100 ~~~~l~-~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~------------------------------~~i~~ 148 (415)
T 1vjv_A 100 LLNTLR-KCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD------------------------------KFSED 148 (415)
T ss_dssp HHHHHH-HHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH------------------------------HHHTT
T ss_pred HHHHHH-HhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc------------------------------chHHH
Confidence 777777 6677887 899999999999999999999841 77999
Q ss_pred hhccccccceeccccCCcc--cccCCCcccccccCCC-CCHHHHhccCCccccccCCCccccCCccccccccCCCccccc
Q psy2130 135 IFQGILTSETKCLNCETVS--SKDEDFFDLQVDIKQN-TSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALE 211 (470)
Q Consensus 135 ~F~g~~~~~~~C~~C~~~s--~~~~~f~~Lsl~i~~~-~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~ 211 (470)
+|+ ++.++++|..|++++ .+.++|++|+|+||.. .+|++||..|+.++ + .+.|+.|+....+.
T Consensus 149 ~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~-i----~~~c~~c~~~~~a~-------- 214 (415)
T 1vjv_A 149 FRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEK-I----EKRSDLTGANSIYS-------- 214 (415)
T ss_dssp TCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTTCCBHHHHHHHHHEEC--------------CCCCEE--------
T ss_pred HHH-hheEEEEECCCCCCccccccccceeeeeccccccchHHHHHHHHhhhh-h----hhcccccCCcccEE--------
Confidence 999 999999999999996 5999999999999975 58999999988744 3 48999999988777
Q ss_pred cccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccCh
Q psy2130 212 KEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAP 291 (470)
Q Consensus 212 ~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p 291 (470)
T Consensus 215 -------------------------------------------------------------------------------- 214 (415)
T 1vjv_A 215 -------------------------------------------------------------------------------- 214 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCccccccc
Q psy2130 292 KKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFH 371 (470)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~ 371 (470)
++..|.++|++|+|||+||.++...+...|+...|.||..|||.+
T Consensus 215 -----------------------------------k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~ 259 (415)
T 1vjv_A 215 -----------------------------------VEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVAD 259 (415)
T ss_dssp -----------------------------------EEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGG
T ss_pred -----------------------------------EEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHH
Confidence 899999999999999999999876666789999999999999988
Q ss_pred CCCCC---------------------------------------------------------------------------
Q psy2130 372 LSDDA--------------------------------------------------------------------------- 376 (470)
Q Consensus 372 ~~~~~--------------------------------------------------------------------------- 376 (470)
++...
T Consensus 260 ~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (415)
T 1vjv_A 260 MLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKG 339 (415)
T ss_dssp GBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTT
T ss_pred hcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccc
Confidence 76421
Q ss_pred CCCCcceEEEEEEEeecCCCCCcEEEEEEec---CCcEEEEeCcceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEecC
Q psy2130 377 VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS---HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSRD 453 (470)
Q Consensus 377 ~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~---~~~W~~~nD~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~ 453 (470)
......|+|+|||+|.|.++.+|||+||+|. +++||+|||+.|++|++++|....|+. .+.+||||||+|++
T Consensus 340 ~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~-----~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 340 ENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGG-----ESDSALILMYKGFG 414 (415)
T ss_dssp BCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCT-----TSCEEEEEEEEETT
T ss_pred cCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCC-----CcceEEEEEEEecC
Confidence 1244789999999999977999999999998 789999999999999999997765442 36789999999986
Q ss_pred C
Q psy2130 454 S 454 (470)
Q Consensus 454 ~ 454 (470)
.
T Consensus 415 l 415 (415)
T 1vjv_A 415 L 415 (415)
T ss_dssp C
T ss_pred C
Confidence 3
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-53 Score=445.13 Aligned_cols=286 Identities=25% Similarity=0.435 Sum_probs=232.0
Q ss_pred CCccccccc-CCchhhhh--hhhccchHHHHHhhhcCC----c-------------------cchhhHHHHHHhhcccCC
Q psy2130 19 NERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDK----I-------------------SLGWECSLILELDLCSSD 72 (470)
Q Consensus 19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~----~-------------------~~~~~~~~~~~l~~~~~~ 72 (470)
..+++||.| |||||||| |||+++|+|...+..... . ....+..|++++. .+
T Consensus 172 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~---~~ 248 (522)
T 2f1z_A 172 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG---WE 248 (522)
T ss_dssp TTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTC---CC
T ss_pred cCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccCCcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcC---Cc
Confidence 468999999 99999999 999999999443321110 0 1111123444443 25
Q ss_pred CCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCCCCchHHHHhhccccccceeccccCCc
Q psy2130 73 EFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETV 152 (470)
Q Consensus 73 ~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~ 152 (470)
.|.++.||||||||.+|||.||+++... ...++|.++|+|++.++++|..|++.
T Consensus 249 ~~~~~~QqDa~Efl~~LLd~L~~~l~~~--------------------------~~~s~i~~lF~G~~~s~i~C~~C~~~ 302 (522)
T 2f1z_A 249 TLDSFMQHDVQELCRVLLDNVENKMKGT--------------------------CVEGTIPKLFRGKMVSYIQCKEVDYR 302 (522)
T ss_dssp TTTSSTTSCHHHHHHHHHHHHHHHHTTS--------------------------TTTTHHHHHHCEEEEEEECCSSSCCC
T ss_pred cCCCcccccHHHHHHHHHHHHHhhccCC--------------------------ccccchhhheeEEEEEEEEcCCCCce
Confidence 7899999999999999999999988421 13468999999999999999999999
Q ss_pred ccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCC
Q psy2130 153 SSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFG 232 (470)
Q Consensus 153 s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~g 232 (470)
+.+.++|++|+|+||...+|++||..|+.+|.+++++.|.|+.|+. ..+.
T Consensus 303 s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~~-~~a~----------------------------- 352 (522)
T 2f1z_A 303 SDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGL-QEAE----------------------------- 352 (522)
T ss_dssp CCEEEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSCBCCGGGCS-BCEE-----------------------------
T ss_pred eeeeeeeEEEEEEeCCcccchHHHHHhhceeecCCcceeecCcCCc-cceE-----------------------------
Confidence 9999999999999999999999999999999999999999999964 4455
Q ss_pred CcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCcccccc
Q psy2130 233 NTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQD 312 (470)
Q Consensus 233 ntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqD 312 (470)
T Consensus 353 -------------------------------------------------------------------------------- 352 (522)
T 2f1z_A 353 -------------------------------------------------------------------------------- 352 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC-CCCCcceEEEEEEEe
Q psy2130 313 AHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA-VNPDRMYNLVAVVIH 391 (470)
Q Consensus 313 a~E~~~~ll~~L~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~-~~~~~~Y~L~avV~H 391 (470)
++..|.++|++|+|||+||.++...+...|+...|.||+.|||.+++... ......|+|+|||+|
T Consensus 353 --------------k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H 418 (522)
T 2f1z_A 353 --------------KGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVH 418 (522)
T ss_dssp --------------EEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEE
T ss_pred --------------EEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEe
Confidence 78899999999999999999987655668999999999999999987653 234678999999999
Q ss_pred ecCCCCCcEEEEEEec--CCcEEEEeCcceeeechhhhh-hhcCCCCCC--CCCCCcEEEEEEEecCCCccc
Q psy2130 392 CGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIE-DFFGLTSDH--QKSSETGYILFYQSRDSTDAR 458 (470)
Q Consensus 392 ~G~~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~-~~~g~~~~~--~~~~~~aYiLfY~r~~~~~~~ 458 (470)
.|. .++|||+||+|. +++||+|||+.|+++++++|. ..+|+..+. .....+||||||+|++..+..
T Consensus 419 ~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~~~~ 489 (522)
T 2f1z_A 419 SGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLSEV 489 (522)
T ss_dssp ECS-SSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTSHHHH
T ss_pred ccc-CCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCchHHh
Confidence 998 799999999995 689999999999999988774 466653210 012578999999999876543
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-51 Score=446.12 Aligned_cols=198 Identities=21% Similarity=0.279 Sum_probs=168.5
Q ss_pred CCccccccc-CCchhhhh--hhhccchHHHHHh------------------------------hhcC-------------
Q psy2130 19 NERYFGLVN-GKTCKEKE--DRIEKSQPFWEQT------------------------------SLQD------------- 52 (470)
Q Consensus 19 ~~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~------------------------------~~~~------------- 52 (470)
+.+++||.| |||||||| |+|+++|+|...+ ....
T Consensus 341 ~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~ 420 (854)
T 3ihp_A 341 GPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGER 420 (854)
T ss_dssp STTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC-------------
T ss_pred CCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhcccccccccccccccc
Confidence 578999999 99999999 9999999992211 1000
Q ss_pred ------CccchhhHHHHHHhhcccCCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCCCC
Q psy2130 53 ------KISLGWECSLILELDLCSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGF 126 (470)
Q Consensus 53 ------~~~~~~~~~~~~~l~~~~~~~f~~~~QqDA~Efl~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (470)
......+..|++.++ ...+.|.+++||||||||.+||+.||+++..
T Consensus 421 ~~~~~~~~~~isP~~f~~~l~-~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~--------------------------- 472 (854)
T 3ihp_A 421 VPEQKEVQDGIAPRMFKALIG-KGHPEFSTNRQQDAQEFFLHLINMVERNCRS--------------------------- 472 (854)
T ss_dssp --------CCBCCHHHHHHHT-TTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT---------------------------
T ss_pred ccccccCCCccChHHHHHHHh-hhccccccccccCHHHHHHHHHHHHHHHhcc---------------------------
Confidence 001223337888888 7889999999999999999999999997631
Q ss_pred CCchHHHHhhccccccceeccccCCcccccCCCcccccccCCC--------------------------------CCHHH
Q psy2130 127 EEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQN--------------------------------TSITQ 174 (470)
Q Consensus 127 ~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~--------------------------------~sl~~ 174 (470)
.+.|.++|+|+++++++|..|++++.+.++|++|+|+||.. .+|++
T Consensus 473 --~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~d 550 (854)
T 3ihp_A 473 --SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSS 550 (854)
T ss_dssp --SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHH
T ss_pred --cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHH
Confidence 23477999999999999999999999999999999999952 59999
Q ss_pred HhccCCccccccCCCccccCCccccccccCCCccccccccCCCCCCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHH
Q psy2130 175 CLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRV 254 (470)
Q Consensus 175 ~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i 254 (470)
||+.|+.+|.++ .|.|++|+.+..+.
T Consensus 551 cL~~f~~~E~Le---~y~C~~C~~k~~a~--------------------------------------------------- 576 (854)
T 3ihp_A 551 CLEAYGAPEQVD---DFWSTALQAKSVAV--------------------------------------------------- 576 (854)
T ss_dssp HHHHHHSCEEEE---EEEETTTTEEEEEE---------------------------------------------------
T ss_pred HHHHhcCceEee---eeeccccCCcceee---------------------------------------------------
Confidence 999999999994 49999999999888
Q ss_pred hccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhhhhhcCC
Q psy2130 255 LEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKL 334 (470)
Q Consensus 255 ~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~~~i~~l 334 (470)
++..|.++
T Consensus 577 ------------------------------------------------------------------------K~~~i~~l 584 (854)
T 3ihp_A 577 ------------------------------------------------------------------------KTTRFASF 584 (854)
T ss_dssp ------------------------------------------------------------------------EEEEESSC
T ss_pred ------------------------------------------------------------------------EEEEeeeC
Confidence 99999999
Q ss_pred CceEEEEeeeeeeeccccccccccceEecCcccccccCC
Q psy2130 335 PMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLS 373 (470)
Q Consensus 335 P~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~ 373 (470)
|++|+|||+||.++.. ....|+...|.||+.|||.++.
T Consensus 585 P~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y~ 622 (854)
T 3ihp_A 585 PDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLR 622 (854)
T ss_dssp CSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGGB
T ss_pred CceEEEEeehheecCC-CceEECCeEEecCCcEehHHhc
Confidence 9999999999999755 4558999999999999998774
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.96 E-value=3.9e-29 Score=239.69 Aligned_cols=177 Identities=26% Similarity=0.422 Sum_probs=143.8
Q ss_pred CccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccccc--ChHHHHHHH-HHHHHHHHhCCCCCCccChHHHHHHHhh
Q psy2130 224 RYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK--NKETLLSCL-ADLFHNIATHKKKVGSIAPKKFITRLRK 300 (470)
Q Consensus 224 ~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~--~~~~l~~~l-~~l~~~l~~~~~~~~~~~p~~~~~~l~~ 300 (470)
.+.||+|+||||||||+||+|+++|++++.++.++..... ....+...| ++++..|.. ..+.|..++..|++
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk-----~~~~P~~~l~~LR~ 82 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI-----YGYVCATKIMKLRK 82 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH-----TSEECHHHHHHHHH
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh-----cCCCcHHHHHHHHH
Confidence 5789999999999999999999999999999988655433 234688888 899999986 67889999999999
Q ss_pred ccCcCC-----ccccccHHHHHHHHHHHHHh---------------------------------------------hhhh
Q psy2130 301 EKDEFD-----NYMQQDAHEFLNFLINHINE---------------------------------------------KCMK 330 (470)
Q Consensus 301 ~~~~~~-----~~~QqDa~E~~~~ll~~L~~---------------------------------------------~~~~ 330 (470)
..+.|. .+.||||+|||..|+..|.. ..+.
T Consensus 83 ~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~E~~e~~~~e~~~qL~e~nfl~~gik 162 (374)
T 2vhf_A 83 ILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFMEKNEKVGVPTIQQLLEWSFINSNLK 162 (374)
T ss_dssp HHHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCCCCC--CCCCBHHHHHHHHHHHHTEE
T ss_pred HhHHHhcccCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhcCcccccCCcHHHHhhhHHHHHcCCe
Confidence 877775 47899999999999996644 3345
Q ss_pred hcCCCceEEEEeeeeeeeccccccccccceEecCcccccccCCCCC----------------------------------
Q psy2130 331 VKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDA---------------------------------- 376 (470)
Q Consensus 331 i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~---------------------------------- 376 (470)
|.++|++|+||+.|| ++..|+..+|.||.+||+.+++.+.
T Consensus 163 isrLP~yLtVq~vRF------gKkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~ 236 (374)
T 2vhf_A 163 FAEAPSCLIIQMPRF------GKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCK 236 (374)
T ss_dssp ESSCCSEEEEECCCC------SSSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECH
T ss_pred eecCCcceEEeeecc------CccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccc
Confidence 899999999999999 3347999999999999986553210
Q ss_pred ----------------------------------CCCCcceEEEEEEEeecCCCCCcEEEEEEec---CCcEEEEeC
Q psy2130 377 ----------------------------------VNPDRMYNLVAVVIHCGSGPNRGHYISIVKS---HDFWLLFDD 416 (470)
Q Consensus 377 ----------------------------------~~~~~~Y~L~avV~H~G~~~~~GHY~a~vr~---~~~W~~~nD 416 (470)
.++...|+|.|||+ +++|||+||||. +++|++||-
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 237 TCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp HHHHHHTTSGGGTTCCCEECCC----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEET
T ss_pred hhhhhhhhhhhhhcccccccccCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEec
Confidence 11237899999999 789999999996 589999985
No 12
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.70 E-value=4e-17 Score=161.24 Aligned_cols=107 Identities=32% Similarity=0.519 Sum_probs=92.1
Q ss_pred CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc-----ccChHHHHHHHHHHHHHHHhCCCCCCccChHHH
Q psy2130 220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN-----KKNKETLLSCLADLFHNIATHKKKVGSIAPKKF 294 (470)
Q Consensus 220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~-----~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~ 294 (470)
+...|++||.|+||||||||+||+|+++|+|+++++...... ......+..++..++..++. ......++|..+
T Consensus 4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~~~~~~p~~~ 82 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT-SSPNDVVSPSEF 82 (348)
T ss_dssp --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTT-CCTTCEECCHHH
T ss_pred CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHc-CCCCCccCHHHH
Confidence 456789999999999999999999999999999998743322 23567899999999999986 334568999999
Q ss_pred HHHHhhccCcCCccccccHHHHHHHHHHHHHhh
Q psy2130 295 ITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK 327 (470)
Q Consensus 295 ~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~ 327 (470)
+.++....+.|..++||||+||+..|++.|++.
T Consensus 83 ~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e 115 (348)
T 3nhe_A 83 KTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNE 115 (348)
T ss_dssp HHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999973
No 13
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=162.99 Aligned_cols=107 Identities=30% Similarity=0.487 Sum_probs=91.7
Q ss_pred CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc-------ccChHHHHHHHHHHHHHHHhCCCCCCccChH
Q psy2130 220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN-------KKNKETLLSCLADLFHNIATHKKKVGSIAPK 292 (470)
Q Consensus 220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~-------~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~ 292 (470)
+..+|++||.|+||||||||+||+|+++|+|+++++...... ......+..+++.|+..|+.... ..+.|.
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~--~~i~P~ 80 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRD--AHVAPR 80 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSC--SEECCH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCC--CCcCHH
Confidence 346789999999999999999999999999999998743221 11245789999999999987643 579999
Q ss_pred HHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhh
Q psy2130 293 KFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKC 328 (470)
Q Consensus 293 ~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~ 328 (470)
.|+.+++...+.|..++||||+||+..||+.|++..
T Consensus 81 ~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l 116 (367)
T 2y6e_A 81 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDL 116 (367)
T ss_dssp HHHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999743
No 14
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.68 E-value=6.1e-17 Score=160.33 Aligned_cols=103 Identities=31% Similarity=0.514 Sum_probs=87.4
Q ss_pred CccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc----ccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHh
Q psy2130 224 RYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN----KKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLR 299 (470)
Q Consensus 224 ~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~----~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~ 299 (470)
|++||.|+||||||||+||+|+++|+|+++++...... ......+..+++.++..++..... ..++|..++.+++
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~-~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSC-EAVNPTRFRAVFQ 80 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSC-CCBCCHHHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHH
Confidence 78999999999999999999999999999998643321 223457899999999999876542 4699999999999
Q ss_pred hccCcCCccccccHHHHHHHHHHHHHhh
Q psy2130 300 KEKDEFDNYMQQDAHEFLNFLINHINEK 327 (470)
Q Consensus 300 ~~~~~~~~~~QqDa~E~~~~ll~~L~~~ 327 (470)
...+.|..++||||+||+.+||+.|++.
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~e 108 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMERLHLE 108 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHHHHHH
T ss_pred HhChhhCCCCccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999973
No 15
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.67 E-value=1.3e-16 Score=161.53 Aligned_cols=106 Identities=30% Similarity=0.472 Sum_probs=91.7
Q ss_pred CCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccccc---------ChHHHHHHHHHHHHHHHhCCCCCCccC
Q psy2130 220 PPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKK---------NKETLLSCLADLFHNIATHKKKVGSIA 290 (470)
Q Consensus 220 ~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~---------~~~~l~~~l~~l~~~l~~~~~~~~~~~ 290 (470)
+...+++||.|+||||||||+||+|+++|+|+++++.+...... ....+..+|+.+|..|+... ...++
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~~v~ 96 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS--FKSVL 96 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC---CCEEC
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCC--CCccC
Confidence 34668999999999999999999999999999999986654321 15589999999999999754 35899
Q ss_pred hHHHHHHHhhccCcCC-------ccccccHHHHHHHHHHHHHhh
Q psy2130 291 PKKFITRLRKEKDEFD-------NYMQQDAHEFLNFLINHINEK 327 (470)
Q Consensus 291 p~~~~~~l~~~~~~~~-------~~~QqDa~E~~~~ll~~L~~~ 327 (470)
|..|+..++...+.|. .+.||||+||+..||+.|++.
T Consensus 97 p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~ 140 (415)
T 1vjv_A 97 PVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIV 140 (415)
T ss_dssp CHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHH
Confidence 9999999999988887 799999999999999999964
No 16
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.66 E-value=1.3e-16 Score=160.35 Aligned_cols=104 Identities=31% Similarity=0.453 Sum_probs=90.1
Q ss_pred CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccccc-------ccChHHHHHHHHHHHHHHHhCCCCCCccChHHH
Q psy2130 222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKN-------KKNKETLLSCLADLFHNIATHKKKVGSIAPKKF 294 (470)
Q Consensus 222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~-------~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~ 294 (470)
..+++||.|+||||||||+||+|+++|+|+++++...... ......+...+..++..++... ...++|..|
T Consensus 59 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~--~~~i~P~~f 136 (396)
T 2gfo_A 59 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ--YRYISPKDF 136 (396)
T ss_dssp STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC--EEEECCHHH
T ss_pred CCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCC--CceECHHHH
Confidence 5789999999999999999999999999999998743211 1234578888999999999865 357999999
Q ss_pred HHHHhhccCcCCccccccHHHHHHHHHHHHHhh
Q psy2130 295 ITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK 327 (470)
Q Consensus 295 ~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~ 327 (470)
+.+++...+.|..++||||+||+.+||+.|++.
T Consensus 137 ~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~e 169 (396)
T 2gfo_A 137 KITIGKINDQFAGYSQQDSQELLLFLMDGLHED 169 (396)
T ss_dssp HHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchhhcCCCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999973
No 17
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.66 E-value=1.3e-16 Score=160.97 Aligned_cols=103 Identities=28% Similarity=0.463 Sum_probs=90.1
Q ss_pred CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccc--c---ccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHH
Q psy2130 222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK--N---KKNKETLLSCLADLFHNIATHKKKVGSIAPKKFIT 296 (470)
Q Consensus 222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~--~---~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~ 296 (470)
...++||.|+||||||||+||+|+++|+|+++++.+... . .....++..+|+.||..|+... ..+.|..|+.
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~---~~v~P~~~~~ 87 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS---SSIPPIILLQ 87 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC---SEECCHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCC---CcCChHHHHH
Confidence 567899999999999999999999999999999987654 1 1236789999999999999753 6899999999
Q ss_pred HHhhccCcCC------ccccccHHHHHHHHHHHHHhh
Q psy2130 297 RLRKEKDEFD------NYMQQDAHEFLNFLINHINEK 327 (470)
Q Consensus 297 ~l~~~~~~~~------~~~QqDa~E~~~~ll~~L~~~ 327 (470)
+++...+.|. .+.||||+||+..||+.|++.
T Consensus 88 ~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~ 124 (404)
T 2ayn_A 88 FLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQK 124 (404)
T ss_dssp HHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHH
Confidence 9999888886 489999999999999999963
No 18
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.65 E-value=2.8e-16 Score=155.55 Aligned_cols=100 Identities=26% Similarity=0.531 Sum_probs=85.0
Q ss_pred CCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHHhhc
Q psy2130 222 NERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKE 301 (470)
Q Consensus 222 ~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l~~~ 301 (470)
..|++||.|+||||||||+||+|+++|+|++.++............+..+|+.+|..|+... ..+.|..++..+.
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~~-- 77 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG-- 77 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTSCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHHT--
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCCcccccHHHHHHHHHHHHhhcC---CCCCCHHHHhhcC--
Confidence 46899999999999999999999999999999987654444445678889999999999765 3567888887764
Q ss_pred cCcCCccccccHHHHHHHHHHHHHh
Q psy2130 302 KDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 302 ~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
.+.|..+.||||+||+.+||+.|++
T Consensus 78 ~~~~~~~~QqDA~EFl~~LLd~L~~ 102 (353)
T 1nb8_A 78 WETLDSFMQHDVQELCRVLLDNVEN 102 (353)
T ss_dssp CCBTTTTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCcccchhHHHHHHHHHHHHHH
Confidence 3678899999999999999999996
No 19
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=164.39 Aligned_cols=108 Identities=31% Similarity=0.504 Sum_probs=92.3
Q ss_pred CCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhcccc-----ccccChHHHHHHHHHHHHHHHhCC------------
Q psy2130 221 PNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKA-----KNKKNKETLLSCLADLFHNIATHK------------ 283 (470)
Q Consensus 221 ~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~-----~~~~~~~~l~~~l~~l~~~l~~~~------------ 283 (470)
...|++||.|+||||||||+||+|+++|+|+++++.... ........+..+|+.++..|+...
T Consensus 340 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~ 419 (854)
T 3ihp_A 340 FGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGE 419 (854)
T ss_dssp CSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC------------
T ss_pred cCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccc
Confidence 367999999999999999999999999999999985322 233456789999999999998754
Q ss_pred ------CCCCccChHHHHHHHhhccCcCCccccccHHHHHHHHHHHHHhhh
Q psy2130 284 ------KKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKC 328 (470)
Q Consensus 284 ------~~~~~~~p~~~~~~l~~~~~~~~~~~QqDa~E~~~~ll~~L~~~~ 328 (470)
.....+.|..|+..++...+.|..++||||+||+.+||+.|++..
T Consensus 420 ~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el 470 (854)
T 3ihp_A 420 RVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNC 470 (854)
T ss_dssp ---------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTC
T ss_pred cccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999999999999999999643
No 20
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.57 E-value=3.7e-15 Score=155.17 Aligned_cols=103 Identities=25% Similarity=0.502 Sum_probs=84.1
Q ss_pred CCCCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccccccChHHHHHHHHHHHHHHHhCCCCCCccChHHHHHHH
Q psy2130 219 FPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRL 298 (470)
Q Consensus 219 ~~~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~p~~~~~~l 298 (470)
.+...+++||.|+||||||||+||+|+++|+||+.++............+..+|+.+|..|+... ..+.|..++..+
T Consensus 169 ~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~ 245 (522)
T 2f1z_A 169 SKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSF 245 (522)
T ss_dssp TTTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSSCTTTCHHHHHHHHHHHHHHCS---SCBCCTTHHHHT
T ss_pred ccccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccCCcccchHHHHHHHHHHHHhcCC---CccCcHHHHhhc
Confidence 34567899999999999999999999999999999987654444445678889999999999865 356777777665
Q ss_pred hhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 299 RKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 299 ~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
. ...|..+.||||+||+..||+.|++
T Consensus 246 ~--~~~~~~~~QqDa~Efl~~LLd~L~~ 271 (522)
T 2f1z_A 246 G--WETLDSFMQHDVQELCRVLLDNVEN 271 (522)
T ss_dssp C--CCTTTSSTTSCHHHHHHHHHHHHHH
T ss_pred C--CccCCCcccccHHHHHHHHHHHHHh
Confidence 3 3668899999999999999999996
No 21
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.56 E-value=7.2e-15 Score=151.39 Aligned_cols=106 Identities=27% Similarity=0.448 Sum_probs=85.8
Q ss_pred CCCCccCcccCCCcchhHHHHHHHhhchHHHHHHhccccc----cccChHHHHHHHHHHHHHHHhCCCC-------CCcc
Q psy2130 221 PNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK----NKKNKETLLSCLADLFHNIATHKKK-------VGSI 289 (470)
Q Consensus 221 ~~~~~~GL~N~gntCy~Ns~LQ~L~~~~~~~~~i~~~~~~----~~~~~~~l~~~l~~l~~~l~~~~~~-------~~~~ 289 (470)
...|++||.|+||||||||+||+|+++|+|+++++..... ...+...+..++..++..++..... ....
T Consensus 137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 216 (476)
T 3mhs_A 137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTN 216 (476)
T ss_dssp GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCC
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhccccccccccccccc
Confidence 4679999999999999999999999999999999864332 2234566888999999999875432 2245
Q ss_pred ChHHHHHHH---hhccCcCCccccccHHHHHHHHHHHHHh
Q psy2130 290 APKKFITRL---RKEKDEFDNYMQQDAHEFLNFLINHINE 326 (470)
Q Consensus 290 ~p~~~~~~l---~~~~~~~~~~~QqDa~E~~~~ll~~L~~ 326 (470)
.|..+...+ ....+.|..++||||+||+.+||+.|++
T Consensus 217 ~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~ 256 (476)
T 3mhs_A 217 RQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQ 256 (476)
T ss_dssp SCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHH
Confidence 566655554 4788999999999999999999999996
No 22
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.04 E-value=1.6e-11 Score=118.03 Aligned_cols=76 Identities=20% Similarity=0.204 Sum_probs=51.7
Q ss_pred Cccccccc-CCchhhhh--hhhccchHHHHHhhhcCCccc------------------------hhhHHHHHHhhcccCC
Q psy2130 20 ERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISL------------------------GWECSLILELDLCSSD 72 (470)
Q Consensus 20 ~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~ 72 (470)
..++||.| |||||||| |||+.+|+++..+..-..... ..+..++..|+ +..|
T Consensus 7 g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk~~~~P~~~l~~LR-~~~p 85 (374)
T 2vhf_A 7 GKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIMKLR-KILE 85 (374)
T ss_dssp EESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHHTSEECHHHHHHHH-HHHH
T ss_pred CCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH-HHhH
Confidence 46899999 99999999 999999999776644321110 00113345555 4444
Q ss_pred CCC-----CcccccHHHHHHHHHHHHHHH
Q psy2130 73 EFD-----NYMQQDAHEFLNFLINHINEV 96 (470)
Q Consensus 73 ~f~-----~~~QqDA~Efl~~LLd~L~ee 96 (470)
+|. +++||||+||+..||..|...
T Consensus 86 Qfae~~G~~~~QQDaEE~~t~Ll~~L~~~ 114 (374)
T 2vhf_A 86 KVEAASGFTSEEKDPEEFLNILFHHILRV 114 (374)
T ss_dssp HHC--------CCCHHHHHHHHHTTTTCC
T ss_pred HHhcccCCCccccCHHHHHHHHHHHHhhc
Confidence 442 479999999999999988763
No 23
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=94.49 E-value=0.031 Score=45.23 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=30.6
Q ss_pred EEEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechh
Q psy2130 384 NLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQS 425 (470)
Q Consensus 384 ~L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~ 425 (470)
+.+|-|.-.|. +|-+-++-.+..||.+||+.+.+-.++
T Consensus 108 DfhAgIflkg~----eHAVFa~~TS~GWyaiDDe~fypwtPd 145 (167)
T 1qmy_A 108 DFHAGIFLKGQ----EHAVFACVTSNGWYAIDDEDFYPWTPD 145 (167)
T ss_dssp GEEEEEEEETT----TEEEEEECCTTSSEEEETTEEEECCCC
T ss_pred hhhhheeecCC----CceEEEEEccCceEEecccccccCCCC
Confidence 44677766665 699999999999999999999987543
No 24
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=93.96 E-value=0.056 Score=47.65 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=30.7
Q ss_pred EEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeechh
Q psy2130 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQS 425 (470)
Q Consensus 386 ~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~ 425 (470)
.+.+++.|. .++|||+.+....+ +.+|-..+.+++..
T Consensus 161 ~~~~vF~G~-~~~GHY~~~~~~~~--~~vDG~~~~~~~~~ 197 (211)
T 3mp2_A 161 VMHAVYTGT-TQNGHYMVDDIEHG--YCVDGMGIKPLKKR 197 (211)
T ss_dssp SEEEEEESC-TTTCEEEEEETTTT--EEEETTEEECCCCS
T ss_pred eeEEEEEcC-CCCceEEEEecccc--eEEeCCceeEcccC
Confidence 577888998 89999999987766 89999988887643
No 25
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=61.66 E-value=5.6 Score=34.39 Aligned_cols=60 Identities=15% Similarity=0.365 Sum_probs=42.4
Q ss_pred EEEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceee--echhhhhhhcCCCCCCCCCCCcEEEEEEEecCCC
Q psy2130 385 LVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDK--IDQSTIEDFFGLTSDHQKSSETGYILFYQSRDST 455 (470)
Q Consensus 385 L~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~--v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r~~~~ 455 (470)
..|.||+... |++|.+|-++.||-+|=..-.+ ++...+..++. ......|=+|-.+-+..
T Consensus 110 ~~~FI~N~~~-----HWfaiRkigg~WyNLdS~l~~P~~i~~~yL~~fL~------ql~~eg~siFvV~g~lP 171 (191)
T 3o65_A 110 ERSFICNYKQ-----HWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLA------RLQQQAYSVFVVKGDLP 171 (191)
T ss_dssp CCEEEEEESS-----CEEEEEEETTEEEECCTTSSSCEEECHHHHHHHHG------GGGSTTEEEEEEESCCC
T ss_pred hhhhhhcccc-----ceeeEEecCCEEEEccCCCCCCCCcChHHHHHHHH------HHHHCCCEEEEEcCCCC
Confidence 3588999865 9999999999999999865444 44444444432 13567888888876543
No 26
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=61.45 E-value=9.4 Score=35.80 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=29.5
Q ss_pred EEEEEeecCCCCCcEEEEEEecCCcEEEEeCcceeeech
Q psy2130 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQ 424 (470)
Q Consensus 386 ~avV~H~G~~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~ 424 (470)
++.+++.|. ..+|||+.+...... +++|-..+.+++.
T Consensus 260 ~~a~vF~G~-~~~GHYt~~~~~~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 260 LCANEYTGN-YQCGHYTHITAKETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp SEEEEEESC-GGGCEEEEEEESSSE-EEEETTEEEEESE
T ss_pred EEEEEEECC-CCccceEEEecCCce-eEEeCCcceeccc
Confidence 455667897 789999999876555 7999999998864
No 27
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=57.32 E-value=12 Score=32.94 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=38.1
Q ss_pred Cccccccc-CCchhhhh--hhhccchHHHHHhhhcCCccchhhH---HHHHHhhcccCCCCCCcccccHHHHHHHHH
Q psy2130 20 ERYFGLVN-GKTCKEKE--DRIEKSQPFWEQTSLQDKISLGWEC---SLILELDLCSSDEFDNYMQQDAHEFLNFLI 90 (470)
Q Consensus 20 ~~~~GL~N-GNtCy~Ns--Q~L~~~~~f~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~f~~~~QqDA~Efl~~LL 90 (470)
.|.+=|+= -|+||+|| -+|-........+ .++- ..|.+. .++.++. ....++--||+++|..|+
T Consensus 11 nG~~vLkq~dNNCwVNaa~l~LQ~~~~~~~~a-w~~f-~~Gd~~~fV~~~Ya~~-----~~~~G~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 11 NGKIILKQGDNNCWINACCYQLQAFDFFNNEA-WEKF-KKGDVMDFVNLCYAAT-----TLARGHSGDAEYLLELML 80 (211)
T ss_dssp TTEEEECCCTTCHHHHHHHHHHTTCTTCCCHH-HHHH-TTTCCHHHHHHHHHHH-----TCCTTSCCCHHHHHHHHH
T ss_pred CCEEEEEccCCCcHHHHHHHHHHhcChhHHHH-HHHH-hCCChHHHHHHHHHHc-----CCCCCCCcCHHHHHHHHH
Confidence 45666777 99999999 3332223321111 1111 333344 4444444 466778899999999998
No 28
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=49.14 E-value=7 Score=21.73 Aligned_cols=14 Identities=21% Similarity=0.600 Sum_probs=11.8
Q ss_pred EEEecCCcEEEEeC
Q psy2130 403 SIVKSHDFWLLFDD 416 (470)
Q Consensus 403 a~vr~~~~W~~~nD 416 (470)
+|+|.++.|+..++
T Consensus 12 ~Yvr~dg~WV~l~t 25 (27)
T 2ww6_A 12 AYVRKFGEWVLLST 25 (27)
T ss_dssp EEEEETTEEEEGGG
T ss_pred eeEEEcCeEEEccc
Confidence 68999999998765
No 29
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=47.81 E-value=12 Score=30.54 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=27.4
Q ss_pred ccccceeccccCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCcccccc
Q psy2130 139 ILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASYQE 201 (470)
Q Consensus 139 ~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~ 201 (470)
...-+.+|..||+...-.+....|.-.... ...+-||.+- ....|+.|+....
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~--------~~h~~p~~~~--~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKDKFDERIKE--------DIHFIPEVVH--AFLACPKCGSHDF 118 (139)
T ss_dssp EECCEEEETTTCCEEEGGGCTTCCSCCCGG--------GCCCCGGGCG--GGCSCSSSSCCCE
T ss_pred ecCCcEECCCCCCEEecccccccccccccc--------cccccccccc--cCCcCccccCCcc
Confidence 556678999999884433322222111111 1112233321 2468999998653
No 30
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=43.79 E-value=21 Score=33.37 Aligned_cols=16 Identities=19% Similarity=0.000 Sum_probs=10.2
Q ss_pred CCCcccccHHHHHHHH
Q psy2130 74 FDNYMQQDAHEFLNFL 89 (470)
Q Consensus 74 f~~~~QqDA~Efl~~L 89 (470)
...++--||+++|..|
T Consensus 158 ~~~G~~gDa~~~L~~L 173 (315)
T 2fe8_A 158 KTVGELGDVRETMTHL 173 (315)
T ss_dssp CCTTSCCCHHHHHHHH
T ss_pred CCCCCCccHHHHHHHH
Confidence 3355666777777666
No 31
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=38.63 E-value=25 Score=22.65 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=9.3
Q ss_pred cceeccccCCcc
Q psy2130 142 SETKCLNCETVS 153 (470)
Q Consensus 142 ~~~~C~~C~~~s 153 (470)
...+|..||++.
T Consensus 3 ~~y~C~vCGyvy 14 (46)
T 6rxn_A 3 QKYVCNVCGYEY 14 (46)
T ss_dssp CCEEETTTCCEE
T ss_pred CEEECCCCCeEE
Confidence 456899999874
No 32
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=31.60 E-value=26 Score=25.99 Aligned_cols=48 Identities=15% Similarity=0.364 Sum_probs=26.5
Q ss_pred cccccceeccccCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCcccc
Q psy2130 138 GILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASY 199 (470)
Q Consensus 138 g~~~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~ 199 (470)
+......+|..||++..-. -.+-.-.|+.....++ +. ..|.|+.|+..
T Consensus 30 ~~~m~~y~C~vCGyvYD~~--~Gdp~~gI~pGT~fed----------lP--ddW~CPvCga~ 77 (87)
T 1s24_A 30 GKAYLKWICITCGHIYDEA--LGDEAEGFTPGTRFED----------IP--DDWCCPDCGAT 77 (87)
T ss_dssp --CCCEEEETTTTEEEETT--SCCTTTTCCSCCCGGG----------CC--TTCCCSSSCCC
T ss_pred ccCCceEECCCCCeEecCC--cCCcccCcCCCCChhH----------CC--CCCCCCCCCCC
Confidence 3345678999999883321 1122223444333332 32 45999999874
No 33
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=28.58 E-value=35 Score=24.94 Aligned_cols=45 Identities=13% Similarity=0.301 Sum_probs=25.4
Q ss_pred ccceeccccCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCcccc
Q psy2130 141 TSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASY 199 (470)
Q Consensus 141 ~~~~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~ 199 (470)
....+|..||++..-. -.+-.-.|+.....++ +. ..|.|+.|+..
T Consensus 25 m~~y~C~vCGyvYD~~--~Gdp~~gI~pGT~fed----------lP--ddW~CPvCga~ 69 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEA--LGWPEDGIAAGTRWDD----------IP--DDWSCPDCGAA 69 (81)
T ss_dssp CCEEEETTTCCEEETT--TCBTTTTBCTTCCTTT----------SC--TTCCCTTTCCC
T ss_pred cceEEeCCCCEEEcCC--cCCcccCcCCCCChhH----------CC--CCCcCCCCCCC
Confidence 3468999999883321 1122223444333332 32 45999999874
No 34
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=28.30 E-value=48 Score=21.88 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=23.7
Q ss_pred ceeccccCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCcccc
Q psy2130 143 ETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASY 199 (470)
Q Consensus 143 ~~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~ 199 (470)
.-+|..||++..-.+ .+-.-.|+.....++ +. ..|.|+.|+..
T Consensus 3 ~y~C~~CGyvYd~~~--Gdp~~gi~pGt~f~~----------lP--~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAK--GDPDSGIKPGTKFED----------LP--DDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTT--CCTTTTCCSSCCTTS----------SC--TTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCc--CCcccCcCCCCchHH----------CC--CCCcCCCCCCc
Confidence 568999998833211 122223443333221 32 45999999874
No 35
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=27.70 E-value=83 Score=27.29 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=15.1
Q ss_pred HHHhhccccccceeccccCCcc
Q psy2130 132 VHEIFQGILTSETKCLNCETVS 153 (470)
Q Consensus 132 i~~~F~g~~~~~~~C~~C~~~s 153 (470)
+.++-.|.....-+|..||++.
T Consensus 160 l~~l~~~~~~~~~~C~~CG~i~ 181 (202)
T 1yuz_A 160 YNDIDAPDDDKFHLCPICGYIH 181 (202)
T ss_dssp HHTTTCCCSCCEEECSSSCCEE
T ss_pred HHHHhcCCCCcEEEECCCCCEE
Confidence 4444455555678999999883
No 36
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=25.50 E-value=45 Score=22.30 Aligned_cols=43 Identities=14% Similarity=0.300 Sum_probs=24.4
Q ss_pred ceeccccCCcccccCCCcccccccCCCCCHHHHhccCCccccccCCCccccCCcccc
Q psy2130 143 ETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCASY 199 (470)
Q Consensus 143 ~~~C~~C~~~s~~~~~f~~Lsl~i~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~ 199 (470)
.-+|..||++..-. -.+-.-.|+.....++ +. ..|.|+.|+..
T Consensus 3 ~y~C~~CGyvYd~~--~Gdp~~gi~pGt~f~~----------lP--~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEA--LGLPEEGIPAGTRWED----------IP--ADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETT--TCBTTTTBCTTCCGGG----------SC--TTCCCTTTCCC
T ss_pred cEEeCCCCeEECCC--cCCcccCcCCCCChhH----------CC--CCCcCCCCCCC
Confidence 46899999883221 1122223444444332 32 45999999874
No 37
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=24.82 E-value=23 Score=28.73 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=20.9
Q ss_pred ccccccc-CCchhhhh--hhh-ccchHHHHHhhhc
Q psy2130 21 RYFGLVN-GKTCKEKE--DRI-EKSQPFWEQTSLQ 51 (470)
Q Consensus 21 ~~~GL~N-GNtCy~Ns--Q~L-~~~~~f~~~~~~~ 51 (470)
.+.|+.| -++|++|+ |.. +--.|||+....+
T Consensus 12 ~fys~pN~hdncWLNtilQLfryvdepfFd~~y~s 46 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFRYVEEPFFDWVYSS 46 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHHTC
T ss_pred ccccCCCCCcchHHHHHHHHHHHcCccchhhccCC
Confidence 4679999 99999999 654 2234555544433
No 38
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.39 E-value=2.2e+02 Score=21.80 Aligned_cols=43 Identities=12% Similarity=-0.057 Sum_probs=26.2
Q ss_pred CcEEEEEEecCCc--EEEEeC----cceeeechhhhhhhcCCCCCCCCCCCcEEEEEEEe
Q psy2130 398 RGHYISIVKSHDF--WLLFDD----DVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQS 451 (470)
Q Consensus 398 ~GHY~a~vr~~~~--W~~~nD----~~V~~v~~~~v~~~~g~~~~~~~~~~~aYiLfY~r 451 (470)
.|||+...+.++. .+.+-| .-...++.+++.+. .+.++++-++
T Consensus 78 ~~h~vVl~~~~~~~~~~~i~dp~~~~g~~~~~~~ef~~~-----------w~G~~l~~~~ 126 (129)
T 3b79_A 78 GGDSCVLNSINMETREAEVTTLESGMVPISIPLEDLLEQ-----------YTGRYFLVKK 126 (129)
T ss_dssp GGEEEEEEEEETTTTEEEEECTTTTTSCEEEEHHHHHHH-----------EEEEEEEEEE
T ss_pred CCCEEEEEEEcCCCceEEEEccCCCCCcEEeeHHHHHhh-----------CCEEEEEEec
Confidence 3699998875433 454545 33456777777543 3677776655
Done!