RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2130
(470 letters)
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 209 bits (534), Expect = 2e-64
Identities = 80/125 (64%), Positives = 101/125 (80%), Gaps = 4/125 (3%)
Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNL 385
EK MK+KKLP ILALHLKRFKY +++NR++K+ +RVVFPLELRLF+ +DDA NPDR+Y L
Sbjct: 180 EKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDAENPDRLYEL 239
Query: 386 VAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
VAVV+H G GPN GHY+SIVKSH WLLFDD+ V+KID++ +E+FFG + T Y
Sbjct: 240 VAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDETVEKIDENAVEEFFG----DSPNQATAY 295
Query: 446 ILFYQ 450
+LFYQ
Sbjct: 296 VLFYQ 300
Score = 194 bits (496), Expect = 1e-58
Identities = 84/159 (52%), Positives = 103/159 (64%), Gaps = 20/159 (12%)
Query: 74 FDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVH 133
FDNYM QDAHEFLNFL+N I E++ +ER A +N++ +PTWVH
Sbjct: 60 FDNYMHQDAHEFLNFLLNEIAEILDAER------KAEKANRKLNNNNNAEP---QPTWVH 110
Query: 134 EIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKC 193
EIFQGILT+ET+CL CETVSS+DE F DL +D++QNTSIT CLR FS+TETLC NKF C
Sbjct: 111 EIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYC 170
Query: 194 DNCASYQEAQG-------PNISALEKEIGPDRFPPNERY 225
D C S QEA+ P I AL + RF +E+
Sbjct: 171 DECCSLQEAEKRMKIKKLPKILALHLK----RFKYDEQL 205
Score = 140 bits (356), Expect = 2e-38
Identities = 59/107 (55%), Positives = 69/107 (64%), Gaps = 19/107 (17%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKV 286
GL NFGNTCY NSVLQALYF E LL+CL DLF +I+ KK+
Sbjct: 1 GLENFGNTCYCNSVLQALYF-------------------ENLLTCLKDLFESISEQKKRT 41
Query: 287 GSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKK 333
G I+PKKFITRL++E + FDNYM QDAHEFLNFL+N I E +K
Sbjct: 42 GVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERK 88
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 134 bits (340), Expect = 1e-36
Identities = 77/263 (29%), Positives = 121/263 (46%), Gaps = 47/263 (17%)
Query: 227 GLVNFGNTCYSNSVLQALY--------FCKPFRDRV---LEYKAKNKKNKETLLSCLADL 275
GL N GNTCY NSVLQAL+ F D++ L+ +K + +L S + DL
Sbjct: 1 GLNNLGNTCYLNSVLQALFSEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDL 60
Query: 276 FH-----NIATHKKKVGSIAPKKFIT---RLRKEKDE-------FDNYMQQDAHEFLNFL 320
F I + S++ + + L + + + +++ E N
Sbjct: 61 FGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCY 120
Query: 321 INHIN-----EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHL--- 372
K +K+KKLP +L +HLKRF + ++ K++ +V FPLEL L
Sbjct: 121 KCEKKKKQEATKRLKIKKLPPVLIIHLKRFSF-NEDGTKEKLNTKVSFPLELDLSPYLSE 179
Query: 373 ---SDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSHDF--WLLFDDDVVDKIDQSTI 427
D+ N Y LVAVV+H G+ + GHY++ VK W F+DD V ++ + +
Sbjct: 180 GEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEV 239
Query: 428 EDFFGLTSDHQKSSETGYILFYQ 450
+F L+S + YILFY+
Sbjct: 240 LEFGSLSS-------SAYILFYE 255
Score = 86.8 bits (215), Expect = 3e-19
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 23/131 (17%)
Query: 77 YMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIF 136
QQDAHEFL FL++ ++E + +++ S + +H++F
Sbjct: 20 SEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSS------------------LKSLIHDLF 61
Query: 137 QGILTSETKCLNC--ETVSSKDEDFFDLQVDIKQ--NTSITQCLRGFSSTETLCSDNKFK 192
G L S CL C E+VS++ E F L + +K S+ CL F E L DN +K
Sbjct: 62 GGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCYK 121
Query: 193 CDNCASYQEAQ 203
C+ QEA
Sbjct: 122 CEKK-KKQEAT 131
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 120 bits (304), Expect = 7e-31
Identities = 50/118 (42%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYK---AKNKKNKETLLSCLADLFHNIAT 281
GL N GNTCY NSVLQAL+ P RD +L+ + L LADLFH + +
Sbjct: 3 PTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQLPRALADLFHALQS 62
Query: 282 HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILA 339
K S++PK F+ L K +F YMQQDAHEFL FL++ ++E +KK A
Sbjct: 63 PNSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFLLFLLDQLHEDLNSLKKRKSHAA 120
Score = 111 bits (279), Expect = 2e-27
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 18/130 (13%)
Query: 325 NEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAV---NPDR 381
K + + +LP +L +HLKRF K+S RV FPLEL L ++ + P
Sbjct: 197 AIKKLDISRLPPVLIIHLKRF-EDFNRETEKKISDRVEFPLELDLSSYLEEELEGEEPPT 255
Query: 382 MYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQK 439
Y LVAVV+H GS + GHYI+ +K + W+ FDD+ V + + +
Sbjct: 256 KYELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVSVVTEEEVL----------- 304
Query: 440 SSETGYILFY 449
+ YILFY
Sbjct: 305 -RSSAYILFY 313
Score = 101 bits (253), Expect = 6e-24
Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 27/153 (17%)
Query: 70 SSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEP 129
S +F YMQQDAHEFL FL++ ++E + S + + + E
Sbjct: 82 ISPQFSGYMQQDAHEFLLFLLDQLHEDLNSLKKRKSHA------------------AENE 123
Query: 130 TWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRG-FSSTETLCSD 188
+ + ++FQG L S KCL C+ SS E F DL + I+ ++S+ + L G F E L +
Sbjct: 124 SLITKLFQGQLESRLKCLKCKKESSTPEPFSDLSLPIEDSSSVLKLLTGNFLKLEELEKE 183
Query: 189 NKFKCDNCASYQEAQGPNISALEKEIGPDRFPP 221
K+ C C Q A K++ R PP
Sbjct: 184 EKYYCPKCGGKQNAI--------KKLDISRLPP 208
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 93.9 bits (234), Expect = 2e-21
Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 15/130 (11%)
Query: 74 FDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVH 133
F Q+DAHEFL +L++ + + L + A S T V
Sbjct: 81 FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQET---------------TLVQ 125
Query: 134 EIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKC 193
+IF G L S+ KCLNC+ VS+ + F DL +DIK S+ L F+ E L +NK+KC
Sbjct: 126 QIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKC 185
Query: 194 DNCASYQEAQ 203
+ C +A
Sbjct: 186 ERCKKKVKAS 195
Score = 82.7 bits (205), Expect = 2e-17
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 23/128 (17%)
Query: 326 EKCMKVKKLPMILALHLKRFK--YMDKMNRHVKVSHRVVFPLELRLF-HLSDDAVNPDRM 382
K + + + P +L +HLKRF K+N+ + FP L L ++S P +
Sbjct: 195 SKQLTIHRAPNVLTIHLKRFSNFRGGKINKQIS------FPETLDLSPYMSQPNDGPLK- 247
Query: 383 YNLVAVVIHCGSGPNRGHYISIVK-SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSS 441
Y L AV++H G P+ GHY VK S+ W DD K+ +IE S
Sbjct: 248 YKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDD---SKVSPVSIETVL---------S 295
Query: 442 ETGYILFY 449
+ YILFY
Sbjct: 296 QKAYILFY 303
Score = 66.1 bits (162), Expect = 5e-12
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKA-KNKKNKETLLSCLADLFHNIATHKKK 285
GL N GNTC+ NSVLQ L P + +L + K+ N+ + C + A
Sbjct: 3 GLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERA-LASS 61
Query: 286 VGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLIN 322
AP+ F + L++ F Q+DAHEFL +L++
Sbjct: 62 GPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLD 98
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 87.3 bits (217), Expect = 6e-19
Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 26/152 (17%)
Query: 326 EKCMKVKKLPMILALHLKRFKY-MDKMNRHVKVSHRVVFPLEL-----------RLFHLS 373
EK + KKLP +L L LKRF++ + M R +K++ R FPLEL + S
Sbjct: 184 EKGVCFKKLPPVLTLQLKRFEFDFETMMR-IKINDRFEFPLELDMEPYTEKGLAKKEGDS 242
Query: 374 DDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTI-EDF 430
+ + +Y L V++H G GHY S +K W F+DDVV D + E+
Sbjct: 243 EKKDSESYIYELHGVLVHSGDAHG-GHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEEC 301
Query: 431 FG---------LTSDHQKSSETGYILFYQSRD 453
FG K + Y+LFY+ +
Sbjct: 302 FGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333
Score = 69.6 bits (171), Expect = 5e-13
Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 26/131 (19%)
Query: 72 DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTW 131
D + + Q D EF L KL G +
Sbjct: 79 DSLNTFEQHDVQEFFRVLF-----------------DKL---------EEKLKGTGQEGL 112
Query: 132 VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKF 191
+ +F G L + C C S ++E F DLQV +K ++ + L + ETL DNK+
Sbjct: 113 IKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKY 172
Query: 192 KCDNCASYQEA 202
C+ C +A
Sbjct: 173 FCEKCGKKVDA 183
Score = 67.3 bits (165), Expect = 3e-12
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 224 RYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSC-LADLFHNIATH 282
Y GL N G TCY NS+LQ LY FR+ V + + L LF +
Sbjct: 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLS 60
Query: 283 KKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMK 330
+ V + D + + Q D EF L + + E+ +K
Sbjct: 61 ESPV--KTTELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDKL-EEKLK 105
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 83.9 bits (208), Expect = 2e-18
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 21/129 (16%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE---LRLFHLSDDAVNPDRMY 383
K + + +LP +L +HLKRF + R K++ V FPL L + + P + Y
Sbjct: 118 KKLTISRLPKVLIIHLKRFSFSRGSTR--KLTTPVTFPLNDLDLTPYVDTRSFTGPFK-Y 174
Query: 384 NLVAVVIHCGSGPNRGHYISIVKSHDF--WLLFDDDVVDKIDQSTIEDFFGLTSDHQKSS 441
+L AVV H GS N GHY + K+++ W FDD V K+ +S++ S
Sbjct: 175 DLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVV------------S 221
Query: 442 ETGYILFYQ 450
+ YILFY+
Sbjct: 222 SSAYILFYE 230
Score = 71.2 bits (175), Expect = 5e-14
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 41/132 (31%)
Query: 78 MQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQ 137
QQDA EFL FL++ ++ +I L FQ
Sbjct: 21 DQQDAQEFLLFLLDGLHSII----------VDL-------------------------FQ 45
Query: 138 GILTSETKCLNCETVSSKDEDFFDLQVDIKQNT------SITQCLRGFSSTETLCSDNKF 191
G L S CL C S+ E F L + I + ++ CLR F+ ETL DN +
Sbjct: 46 GQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAW 105
Query: 192 KCDNCASYQEAQ 203
KC C ++A
Sbjct: 106 KCPKCKKKRKAT 117
Score = 41.5 bits (98), Expect = 4e-04
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 227 GLVNFGNTCYSNSVLQAL 244
GL N GNTCY NS+LQ L
Sbjct: 1 GLRNLGNTCYMNSILQCL 18
Score = 33.4 bits (77), Expect = 0.18
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 309 MQQDAHEFLNFLINHI 324
QQDA EFL FL++ +
Sbjct: 21 DQQDAQEFLLFLLDGL 36
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 79.0 bits (195), Expect = 4e-16
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 26/134 (19%)
Query: 327 KCMKVKKLPMILALHLKRFKY-MDKMNRHVKVSHRVVFPLELRL---------FHLSDDA 376
K + +KKLP +L LKRF++ ++K +R K+ V FPLEL + ++
Sbjct: 209 KQLSIKKLPPVLCFQLKRFEHSLNKTSR--KIDTYVQFPLELNMTPYTSSSIGDTQDSNS 266
Query: 377 VNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH-DFWLLFDDDVVDKIDQSTIEDFFGLTS 435
++PD Y+L AVV+H G+ + GHY + + W FDD ++ ++ + +
Sbjct: 267 LDPDYTYDLFAVVVHKGT-LDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLK------ 319
Query: 436 DHQKSSETGYILFY 449
Y+LFY
Sbjct: 320 ------SQAYLLFY 327
Score = 71.2 bits (175), Expect = 1e-13
Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 34/141 (24%)
Query: 77 YMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIF 136
Y QQDAHEF FL++ ++ GG N ++ +H+ F
Sbjct: 86 YSQQDAHEFFQFLLDQLHT------------------HYGGDKNEANDESHCNCIIHQTF 127
Query: 137 QGILTSETKCLNCETVSSKDEDFFDLQVDIKQNT---------------SITQCLRGFSS 181
G L S C C VS+ + F DL +DI + +++ CL F+
Sbjct: 128 SGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTR 187
Query: 182 TETLCSDNKFKCDNCASYQEA 202
E L +KC C S QEA
Sbjct: 188 PEKLGDFA-YKCSGCGSTQEA 207
Score = 60.5 bits (147), Expect = 5e-10
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLA----DLFHNIATH 282
GL+N G TC+ N +LQAL R+ L + + SCL+ ++F
Sbjct: 2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYS 61
Query: 283 KKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
+ P + K Y QQDAHEF FL++ ++ K
Sbjct: 62 GDRSPYG-PINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA 113
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 75.9 bits (187), Expect = 1e-15
Identities = 53/208 (25%), Positives = 76/208 (36%), Gaps = 41/208 (19%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKV 286
GLVN GNTC+ NSVLQAL + + E+ + + L L + +
Sbjct: 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFLEQQ--DAHELFQVLLETLEQLLKFPFD- 57
Query: 287 GSIAPKKFITRLRKEKDEFDNYMQQDAHEF------------LNFLINHINE-------K 327
G +A I L+ + Y L ++ K
Sbjct: 58 GLLA--SRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDDYK 115
Query: 328 CM----KVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMY 383
C + +LP IL +HL R + D K S +V FP L P +Y
Sbjct: 116 CDRCQTVIVRLPQILCIHLSRSVF-DGRGTSTKNSCKVSFPERL-----------PKVLY 163
Query: 384 NLVAVVIHCGSGPNRGHYISIVKSHDFW 411
L AVV+H GS + GHY+ + F
Sbjct: 164 RLRAVVVHYGS-HSSGHYVCYRRKPLFS 190
Score = 40.8 bits (96), Expect = 7e-04
Identities = 33/141 (23%), Positives = 42/141 (29%), Gaps = 49/141 (34%)
Query: 68 LCSSDEFDNYM-----QQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHS 122
L S Y+ QQDAHE L+ +
Sbjct: 18 LASLPSLIEYLEEFLEQQDAHELFQVLLETL---------------------------EQ 50
Query: 123 SSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDL------QVDIKQNTSITQCL 176
F P F G+L S CL C S + F + T++ CL
Sbjct: 51 LLKF--P------FDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCL 102
Query: 177 RGFSSTETLCSDNKFKCDNCA 197
F STE D +KCD C
Sbjct: 103 DDFLSTEI-IDD--YKCDRCQ 120
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 74.3 bits (183), Expect = 9e-15
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKET---LLSCLADLFHNIATHK 283
GL N GNTCY NS LQ L RD + Y + ++ L + L DLF +
Sbjct: 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTM---D 57
Query: 284 KKVGSIAPKKFITRLRK------EKDEFDNYMQQDAHEFLNFLINHINEK 327
KK + P +F+ LR EK Y QQDA E + L++ +++K
Sbjct: 58 KKQEPVPPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQK 107
Score = 71.2 bits (175), Expect = 1e-13
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 330 KVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVV 389
++ +LP L + RF + + + K+ +V FP EL L+ + P Y LVAV+
Sbjct: 192 RISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLY----ELCTPSGYYELVAVI 247
Query: 390 IHCGSGPNRGHYISIVKS--HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYIL 447
H G + GHY++ V+ W+ FDDD V ++ + I G H YIL
Sbjct: 248 THQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWH-----IAYIL 302
Query: 448 FY 449
Y
Sbjct: 303 LY 304
Score = 30.8 bits (70), Expect = 1.3
Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 30/118 (25%)
Query: 76 NYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEI 135
Y QQDA E + L++ ++ KL + +++ ++
Sbjct: 87 GYAQQDAEECWSQLLSVLS-------------QKLPGAGS------------KGSFIDQL 121
Query: 136 FQGILTSETKCLNCETV-SSKDEDFFDLQVDIKQNTSI----TQCLRGFSSTETLCSD 188
F L ++ KC E + LQ I T + +G S
Sbjct: 122 FGIELETKMKCTESPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIEKHSP 179
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 74.2 bits (182), Expect = 1e-14
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 326 EKCMKVKKLPMILALHLKRF----KYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDR 381
E+ + KLP ++ +HLK F D KV+ ++ PL+L L S N
Sbjct: 213 ERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKPKNDV- 271
Query: 382 MYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSS 441
Y L AVV+H G+ + GHY + V+ WLLFDD ++ + +DF S + S+
Sbjct: 272 -YRLFAVVMHSGATISSGHYTAYVR----WLLFDD---SEVKVTEEKDFLEALSPNTSST 323
Query: 442 ETGYILFY 449
T Y+LFY
Sbjct: 324 STPYLLFY 331
Score = 63.8 bits (155), Expect = 4e-11
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRV--LEYKAKNKKNKETLLSCLADLFHNIATHKK 284
GL N GNTCY NSVLQ LYFC F+ + L + + ++ + +++
Sbjct: 26 GLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKYNDEL---- 81
Query: 285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326
+ AP++ + LR+ ++ Y+Q DA E L ++ +I E
Sbjct: 82 --ANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQE 121
Score = 62.6 bits (152), Expect = 9e-11
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 54/148 (36%)
Query: 74 FDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVH 133
++ Y+Q DA E L ++ +I E+ V
Sbjct: 100 YEGYLQHDAQEVLQCILGNIQEL-----------------------------------VE 124
Query: 134 EIFQGILTSETKCLNCETVSSKDEDFFDLQVDIK-------------------QNTSITQ 174
+ FQG L T+CL CET + + EDF D+ V ++ + ++
Sbjct: 125 KDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKW 184
Query: 175 CLRGFSSTETLCSDNKFKCDNCASYQEA 202
+ F+S E + ++K+ C+NC Y EA
Sbjct: 185 AISQFASVERIVGEDKYFCENCHHYTEA 212
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 70.9 bits (174), Expect = 1e-13
Identities = 70/286 (24%), Positives = 104/286 (36%), Gaps = 69/286 (24%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLE---------------YKAKNKKNKETLLSC 271
GL N GNTC+ N+V+Q L R+ + E +K +++ LL
Sbjct: 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSETPKELFSQVCRKAPQFKGYQQQDSHELLRY 60
Query: 272 LAD-------------LFHNIATHKKKVGSIAPKKF----ITRLRKEKDEF--DNYMQQD 312
L D L I S+ + F + R + K E ++ ++Q
Sbjct: 61 LLDGLRTFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQF 120
Query: 313 AHEFLNFLINHI-NEKCMKVKK------LPMILALHLKRFK-----YMDKMNRHVKVSHR 360
+ N E C K KK LP +L +HLKRF+ + K++RHV
Sbjct: 121 TEVEILEGNNKFACENCTKAKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVS---- 176
Query: 361 VVFPLELRLFHLSDDAVNPDR-----MYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFD 415
FP L L D N +Y L VV H G+ GHY++ VK
Sbjct: 177 --FPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTM-RSGHYVAYVKVRPPQQRLS 233
Query: 416 DDVVDKIDQSTIED-----FFGLTSDHQKSSET------GYILFYQ 450
D K ++ SD ++ S Y+LFY+
Sbjct: 234 DLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Score = 63.2 bits (154), Expect = 4e-11
Identities = 43/134 (32%), Positives = 55/134 (41%), Gaps = 41/134 (30%)
Query: 73 EFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWV 132
+F Y QQD+HE L +L++ + I S
Sbjct: 45 QFKGYQQQDSHELLRYLLDGLRTFIDS--------------------------------- 71
Query: 133 HEIFQGILTSETKCLNCETVSSKDEDFFDLQ----VDIKQNTSITQCLRGFSSTETLCSD 188
IF G LTS C +C TVS E F DL +IK SI CL+ F+ E L +
Sbjct: 72 --IFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGN 129
Query: 189 NKFKCDNC--ASYQ 200
NKF C+NC A Q
Sbjct: 130 NKFACENCTKAKKQ 143
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 69.0 bits (169), Expect = 8e-13
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 31/149 (20%)
Query: 73 EFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWV 132
D QQDA EF ++ + E LS+ + K V
Sbjct: 82 GLDTGQQQDAQEFSKLFLSLL-EAKLSKSKNPDLK----------------------NIV 118
Query: 133 HEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFK 192
++F+G + T+C C SS F++L++ +K + ++ +C+ F E L DN++
Sbjct: 119 QDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYF 178
Query: 193 CDNCASYQEAQGPNISALEKEIGPDRFPP 221
C++C S +A + I PP
Sbjct: 179 CESCNSKTDAT--------RRIRLTTLPP 199
Score = 65.5 bits (160), Expect = 9e-12
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLV 386
+ +++ LP L L RF + K K++ + FP L + ++ +Y L
Sbjct: 190 RRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAESDEGSYVYELS 249
Query: 387 AVVIHCGSGPNRGHYISIVK--SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQK----- 439
V+IH G GHYI+ +K W F+D+ V+++ ++ G + D K
Sbjct: 250 GVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKL--GNSEDPAKPRKSE 307
Query: 440 ------SSETGYILFY 449
SS T Y+L Y
Sbjct: 308 IKKGTHSSRTAYMLVY 323
Score = 56.3 bits (136), Expect = 1e-08
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 18/112 (16%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEY-----------KAKNKKNKETLLSCLADL 275
GL N G TCY NS LQ + FR V E +T++ L +
Sbjct: 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLI 60
Query: 276 FHNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK 327
F + + V + P F+ L D QQDA EF ++ + K
Sbjct: 61 FAQLQFGNRSV--VDPSGFVKALG-----LDTGQQQDAQEFSKLFLSLLEAK 105
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 65.2 bits (159), Expect = 1e-11
Identities = 43/166 (25%), Positives = 56/166 (33%), Gaps = 46/166 (27%)
Query: 326 EKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRL-----FHLSDDAVNPD 380
EK MKV P L L L RF Y K + K+ V L L S+ +
Sbjct: 167 EKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKK 226
Query: 381 RM--------------YNLVAVVIHCGSGPNRGHYISIVKS------------------- 407
Y L AVV+H G GHY + +
Sbjct: 227 EEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEE 286
Query: 408 ---HDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450
W LF+D V S+ E +TS + +T YILFY+
Sbjct: 287 NDESKNWYLFNDSRV---TFSSFESVQNVTS--RFPKDTPYILFYE 327
Score = 64.1 bits (156), Expect = 4e-11
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKV 286
GL+N GNTCY NSVLQAL+ K FR +VL + ++++ L L ++ +++
Sbjct: 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHLMHTQRRA 60
Query: 287 GSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHI 324
+ P F+ R F QQD E+L +L++ +
Sbjct: 61 EA-PPDYFLEASRPPW--FTPGSQQDCSEYLRYLLDRL 95
Score = 52.1 bits (125), Expect = 2e-07
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 38/125 (30%)
Query: 79 QQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQG 138
QQD E+L +L++ ++ T + ++F G
Sbjct: 81 QQDCSEYLRYLLDRLH-----------------------------------TLIEKMFGG 105
Query: 139 ILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKFKCDNCAS 198
L++ +CLNC + S++ E F DL + S+ L F S E L DN++ C+ CAS
Sbjct: 106 KLSTTIRCLNCNSTSARTERFRDLDLSF---PSVQDLLNYFLSPEKLTGDNQYYCEKCAS 162
Query: 199 YQEAQ 203
Q+A+
Sbjct: 163 LQDAE 167
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 61.8 bits (150), Expect = 9e-11
Identities = 53/266 (19%), Positives = 91/266 (34%), Gaps = 67/266 (25%)
Query: 228 LVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKE----TLLSCLADLFHNIATHK 283
LVN GN+CY NS +QAL E+ ++++ TLL + D+ T+
Sbjct: 2 LVNTGNSCYFNSTMQALSSIGKINT---EFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNV 58
Query: 284 KKVG--------------SIAPKKFITRLRKEKDEFD------------NYMQQDAHEFL 317
+I E++ D +
Sbjct: 59 PPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLDIDELLISN 118
Query: 318 NFLINHINEKCMKVK-----------KLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE 366
+ I + C K P L+++LKR+K + ++K + ++
Sbjct: 119 FKTWSPIEKDCSSCKCESAISSERIMTFPECLSINLKRYKLRIATSDYLKKNEEIMKKYC 178
Query: 367 LRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKS---HDFWLLFDDDVVDKID 423
D Y+LVAV+ H G P GHYI+ K WL DD + +
Sbjct: 179 GT-----------DAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVS 227
Query: 424 QSTIEDFFGLTSDHQKSSETGYILFY 449
++ + + +GY++FY
Sbjct: 228 KNDVS---------TNARSSGYLIFY 244
Score = 38.3 bits (89), Expect = 0.005
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 73 EFDNYMQQDAHEFLNFLINHINEVILSERP 102
EFDN QQDAHEFL L+ I++++ R
Sbjct: 27 EFDNDDQQDAHEFLLTLLEAIDDIMQVNRT 56
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 63.4 bits (154), Expect = 1e-10
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLL-------SCLADLFHNI 279
GL N GNTCY NS LQ L RD L + + N+E L S ADL +
Sbjct: 267 GLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQL 326
Query: 280 ATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLP 335
+ + + P F + +EF Y QQD+ EF+ FL++ ++E ++ K P
Sbjct: 327 --YDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKP 380
Score = 56.0 bits (135), Expect = 2e-08
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 18/129 (13%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL-ELRLFHLSDDAVNPDRMYNL 385
K M++ +LPMIL +HLKRF + K+ V +P+ +L L + +P +Y+L
Sbjct: 709 KQMELWRLPMILIIHLKRFSSVRSFRD--KIDDLVEYPIDDLDLSGVEYMVDDPRLIYDL 766
Query: 386 VAVVIHCGSGPNRGHYISIVK--SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSET 443
AV H G G + GHY + + +++ W LFDD + ++D + +
Sbjct: 767 YAVDNHYG-GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDS------------VTSS 813
Query: 444 GYILFYQSR 452
Y+LFY+ +
Sbjct: 814 AYVLFYRRK 822
Score = 43.3 bits (102), Expect = 3e-04
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 18/102 (17%)
Query: 73 EFDNYMQQDAHEFLNFLINHINEVI--LSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPT 130
EF Y QQD+ EF+ FL++ ++E + + ++P + S PD GD+ +
Sbjct: 349 EFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYT------SKPDLSPGDDVVVKKKAKEC 402
Query: 131 W----------VHEIFQGILTSETKCLNCETVSSKDEDFFDL 162
W + ++FQG+ S C C +VS + F DL
Sbjct: 403 WWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDL 444
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 62.0 bits (150), Expect = 2e-10
Identities = 48/184 (26%), Positives = 65/184 (35%), Gaps = 20/184 (10%)
Query: 217 DRFPPNERYFGLVNFGNTCYSNSVLQALYFCK----PFRDRVLEYKAKNKKNKETLLSCL 272
D PPN GL N GNTCY N LQ L + R + S
Sbjct: 67 DNLPPN----GLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNA 122
Query: 273 ADLF----HNIATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKC 328
F H K SI+P+ FI L F MQQD+ EFL F ++ ++E
Sbjct: 123 FKQFIALYETPGCHGPK--SISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDL 180
Query: 329 MKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAV 388
K IL L F+ + + SH E L S+ ++ +
Sbjct: 181 NGNKSRSPILELK-DEFEEVREELPLSHFSH-----HEWNLHLRSNKSLVAKTFFGQDKS 234
Query: 389 VIHC 392
+ C
Sbjct: 235 RLQC 238
Score = 54.6 bits (131), Expect = 5e-08
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 27/133 (20%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPD------ 380
K M++ LP +L +H+ RF V ++ P + + V
Sbjct: 298 KRMEILVLPDVLIIHISRFHIS------VMGRKKIDTPQGWKNTASVEVNVTLLFNNGIG 351
Query: 381 ---RMYNLVAVVIHCGSGPNRGHYISIVKSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDH 437
R Y+L+ VV H G+ N GHY S VK W ++DD V K ++T
Sbjct: 352 YIPRKYSLLGVVCHNGT-LNGGHYFSEVKRSGTWNVYDDSQVRKGSRTT----------- 399
Query: 438 QKSSETGYILFYQ 450
S + YILFY
Sbjct: 400 SGSHPSSYILFYT 412
Score = 50.8 bits (121), Expect = 8e-07
Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 15/152 (9%)
Query: 66 LDLCSS--DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSS 123
+D+ S F MQQD+ EFL F ++ ++E + + +S +L +
Sbjct: 147 IDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPIL-ELKDEFEEVREELPL 205
Query: 124 SGFEEPTW----------VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ--NTS 171
S F W V + F G S +C C S+ F L V +
Sbjct: 206 SHFSHHEWNLHLRSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLG 265
Query: 172 ITQCLRGFSSTETLCSDNKFKCDNCASYQEAQ 203
+ +C+ F E L + ++C C + ++
Sbjct: 266 LQECIDRFYEEEKLEGKDAWRCPKCGRKESSR 297
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 60.0 bits (146), Expect = 5e-10
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAK---NKKNKETLLSC-LADLFHNIATH 282
GL N GN+CY NSVLQ L+ F+ R + + K + + L+C L L + +
Sbjct: 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSG 60
Query: 283 KKKVGS------------IAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMK 330
+ + I P F + K EF QQDA EFL LI+ ++ + K
Sbjct: 61 RYSKPASLKSENDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFK 120
Score = 46.5 bits (111), Expect = 1e-05
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 28/128 (21%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLV 386
K K P L +++KRF+ + + K+ + P EL P + Y L+
Sbjct: 208 KTTGFKTFPDYLVINMKRFQ-LLENWVPKKLDVPIDVPEELG----------PGK-YELI 255
Query: 387 AVVIHCGSGPNRGHYISIVK----SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSE 442
A + H G+ + GHY++ +K W+LF+D +K+ S +
Sbjct: 256 AFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFND---EKVVASQDPPEM---------KK 303
Query: 443 TGYILFYQ 450
GYI FYQ
Sbjct: 304 LGYIYFYQ 311
Score = 36.9 bits (86), Expect = 0.017
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 44/137 (32%)
Query: 73 EFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWV 132
EF QQDA EFL LI+ ++ + P
Sbjct: 94 EFSTMRQQDALEFLLHLIDKLD------------------------RESFKNLGLNPN-- 127
Query: 133 HEIFQGILTSETKCLNCETVSSKDEDFFDLQVDI--------------KQNTSITQCLRG 178
++F+ ++ +CL+C+ V E L + + + + CL+
Sbjct: 128 -DLFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKA 186
Query: 179 FSSTETL---CSDNKFK 192
+ + ET+ CS K K
Sbjct: 187 YFAPETIEDFCSTCKEK 203
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 58.3 bits (141), Expect = 5e-09
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK 284
Y GL N G TCY NS+LQ+L+F FR V + + ++++ L LF+N+ T ++
Sbjct: 193 YVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRDSVALALQRLFYNLQTGEE 252
Query: 285 KVGSIAPKKFITRLRKEK--DEFDNYMQQDAHEFLNFLINHINEKCMK 330
V + T L + D D++MQ D EF L +++ EK M+
Sbjct: 253 PVDT-------TELTRSFGWDSDDSFMQHDIQEFNRVLQDNL-EKSMR 292
Score = 54.5 bits (131), Expect = 8e-08
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 20/134 (14%)
Query: 306 DNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPL 365
+ + QDA + + F + LP +L L LKRF+Y + + VK++ R FPL
Sbjct: 362 EKHGLQDAKKGVIF------------ESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPL 409
Query: 366 ELRLF-HLSDDAV---NPDRMYNLVAVVIHCGSGPNRGHYISIVKSH--DFWLLFDDDVV 419
E+ L L DA N D +Y L V++H G GHY +++K W FDD V
Sbjct: 410 EIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHE-GHYYALLKPEKDGRWYKFDDTRV 468
Query: 420 DKI-DQSTIEDFFG 432
+ ++ +E+ FG
Sbjct: 469 TRATEKEVLEENFG 482
Score = 44.9 bits (106), Expect = 9e-05
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 27/132 (20%)
Query: 72 DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTW 131
D D++MQ D EF N V+ +S + +
Sbjct: 266 DSDDSFMQHDIQEF--------NRVLQDNLEKSMRGTVVENA------------------ 299
Query: 132 VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKF 191
++ IF G + S KC+N S++ EDF+D+Q+++K ++ + R + ETL DN++
Sbjct: 300 LNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRY 359
Query: 192 KCDNCASYQEAQ 203
+ Q+A+
Sbjct: 360 NAEK-HGLQDAK 370
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 55.5 bits (133), Expect = 4e-08
Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 19/221 (8%)
Query: 115 GGGGDNHSSSGFEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQ 174
G G+ H+ S +EE + L+ E + C E + S+T
Sbjct: 202 GAEGNGHALSHYEETQHPLAVKLPSLSKEDCDIYC--YLCDSEIRSRYNSNEN---SVTI 256
Query: 175 CLRGFSSTETLCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPN--ERYFGLVNFG 232
+ ++ K + Q Q N LEK+ P+ + Y GL+N G
Sbjct: 257 DFGI--NIADGKTEEK----SLRKLQSEQNANWEFLEKKRAPESKGESVPSPYVGLINLG 310
Query: 233 NTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKK------V 286
N+CY +SV+Q+L ++ + + L CL + + K+ V
Sbjct: 311 NSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYV 370
Query: 287 GSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEK 327
I+P F + ++ EF + QQDAHEFL FL+ I +
Sbjct: 371 NGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKG 411
Score = 38.9 bits (90), Expect = 0.006
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 37/153 (24%)
Query: 73 EFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWV 132
EF + QQDAHEFL FL+ I + +S L P +
Sbjct: 388 EFGKFAQQDAHEFLLFLLEKIRK---------GERSYLIPP------------------I 420
Query: 133 HEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQN---TSITQCLRGFSSTETLCSDN 189
+F+ + C C VS E + + ++ N I + + F +T+
Sbjct: 421 TSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTI---- 476
Query: 190 KFKCDNCASYQEA-QGPNISALEKE--IGPDRF 219
++ C+NC ++A + P I +L K + R+
Sbjct: 477 EWSCENCKGKKKASRKPFIKSLPKYLILQVGRY 509
Score = 33.5 bits (76), Expect = 0.26
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 383 YNLVAVVIHCGSGPNRGHYISIV----KSHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQ 438
Y L AV+ H G + GHY+ + K W+L +D+ + S++E
Sbjct: 688 YALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKT--VLNSSVEVL-------- 737
Query: 439 KSSETGYILFYQ 450
+ GYI ++
Sbjct: 738 --KDNGYIYLFK 747
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 53.6 bits (129), Expect = 7e-08
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 330 KVKKLPMILALHLKRFKYMDKMNRHVKVSH-RVVFPLELRLFH-LSDDA------VNPDR 381
VK LP IL + LKR+ N + + V PLE+RL H + DD ++ +
Sbjct: 197 HVKSLPPILGICLKRYNVTP--NGNWSRLNTFVDIPLEIRLPHFIQDDEMVNEGPLSGNF 254
Query: 382 MYNLVAVVIHCGSGPNRGHYISIV----KSHDFWLLFDDDVV 419
Y L VV H G + GH +S + D W LF+D +V
Sbjct: 255 KYELQGVVCHIGDSTHSGHLVSFIRVAPSEDDQWYLFNDFLV 296
Score = 45.5 bits (108), Expect = 3e-05
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSC-LADLFHNIATHKKK 285
GL N G CY N++LQ ++F P + +L + A KE L C L LF + +
Sbjct: 2 GLENNGPNCYLNALLQLMFFIPPLFNAILRHSADC--PKENCLLCELGFLFDMLDKSTGQ 59
Query: 286 VGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHIN 325
+ + +QQD E F++ ++
Sbjct: 60 NCQAT--NLLRTFSGIPEAAALGLQQDIQEANRFILEQLS 97
Score = 37.8 bits (88), Expect = 0.009
Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 23/130 (17%)
Query: 79 QQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTWVHEIFQG 138
QQD E F++ ++ +L+ +P H+ E + +F
Sbjct: 82 QQDIQEANRFILEQLSLPLLTLKPDIF---------------HNRCTGESGDSLDSLFGT 126
Query: 139 ILTSETKCLNCETVSSKDEDFFDLQV-----DIKQNTSITQCLRGFSSTETLCSDNKFKC 193
S +C +C S K+E L++ D Q + + L + E N+ C
Sbjct: 127 SFISSIRCDSCGNESVKEEPLLTLELPYPPIDKPQGRTFSNILERSLNREK---INRITC 183
Query: 194 DNCASYQEAQ 203
++C Y A
Sbjct: 184 NSCRKYSLAN 193
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 53.1 bits (128), Expect = 1e-07
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
Query: 207 ISALEKEIGPDRFPPNERYF----GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYK--AK 260
IS L+++ R + Y GL N N Y+N ++QAL KP R+ L Y+
Sbjct: 97 ISDLDRDPKLSRDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYEN 156
Query: 261 NKKNKETLLSCLADLFHNIATHKKKVGSIAPKKF---ITRLRKEKDEFDNYMQQDAHEFL 317
K K L+ L++L I + G ++P + ++++ K+K F Q D EFL
Sbjct: 157 IKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKK--FSITEQSDPVEFL 214
Query: 318 NFLINHI 324
++L+N +
Sbjct: 215 SWLLNTL 221
Score = 41.5 bits (98), Expect = 7e-04
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 330 KVKKLPMILALHLKRFKYMDKMNRHVKVSHRVV-FPLELRLF----HLSDDAVNPDRMYN 384
+ +LP L H+KRF K N + + +V FP++ H ++N YN
Sbjct: 328 LISRLPKYLIFHIKRF---SKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYN 384
Query: 385 LVAVVIHCGSGPNRGHYISIV--KSHDFWLLFDDDVVDKI 422
LVA ++H G+ G + + KS + W D V ++
Sbjct: 385 LVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEV 424
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 50.6 bits (121), Expect = 8e-07
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEY---KAKNKKNKET 267
GL N GNTCY NS+LQ + KP RD VL + KA+ + T
Sbjct: 3 GLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPT 46
Score = 28.6 bits (64), Expect = 6.6
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 383 YNLVAVVIHCGSGPNRGHYISIVKSH--DFWLLFDDDVVDKIDQSTIEDF 430
Y L AV IH G + GHY +K + W ++D+ V + S + F
Sbjct: 281 YRLHAVFIHRGEA-SSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLF 329
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 228
Score = 41.8 bits (98), Expect = 4e-04
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 22/120 (18%)
Query: 333 KLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHC 392
+LP +L L RF++ R K+ ++ FP ++ V Y L AV++H
Sbjct: 127 ELPPVLTFELSRFEF--NQGRPEKIHDKLEFPQIIQ-------QVP----YELHAVLVHE 173
Query: 393 GSGPNRGHYISIV--KSHDFWLLFDDDVVDKIDQSTIE-DFFGLTSDHQKSSETGYILFY 449
G N GHY + + +S W ++D V + +E D FG + + Y L Y
Sbjct: 174 GQA-NAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRN-----PSAYCLMY 227
Score = 30.2 bits (68), Expect = 1.7
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 227 GLVNFGNTCYSNSVLQALY 245
GL N GNTC+ ++V+Q+L+
Sbjct: 1 GLKNVGNTCWFSAVIQSLF 19
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 241
Score = 37.1 bits (86), Expect = 0.012
Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 47/156 (30%)
Query: 332 KKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYN------- 384
K P L + LKR+ + K+ +++ P E+ + D
Sbjct: 96 AKAPSCLIICLKRYGKTEGKA--QKMFKKILIPDEIDIPDFVADDPRACSKCQLECRVCY 153
Query: 385 ---------------LVAVVIHCGSGPNRGHYISIVKS-------------HDFWLLFDD 416
L + V H G+ GHY++ V+ + W+ FDD
Sbjct: 154 DDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDD 213
Query: 417 --DVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450
D + I L E Y+LFYQ
Sbjct: 214 MADRDGVSNGFNIPAARLL--------EDPYMLFYQ 241
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 268
Score = 37.1 bits (86), Expect = 0.013
Identities = 51/273 (18%), Positives = 72/273 (26%), Gaps = 66/273 (24%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLF----HNIA 280
Y GL N Y NS+LQ LYF PFR+ + LL L LF N
Sbjct: 15 YAGLENHITNSYCNSLLQLLYFIPPFRN-FTAIILVACPKESCLLCELGYLFSTLIQNFT 73
Query: 281 TH-KKKVGSIAPKKFITRLRKEKDEFDNY------MQQDAHEFLNFLIN----------- 322
+ + + Y + FL
Sbjct: 74 RFLLETISQDQLGTPFSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVT 133
Query: 323 ----------HINEKCMKVKKLPMI----LALHLKRFKYMDKMNRHVKVS-----HRVVF 363
E+ ++ LP I L ++L V S ++V
Sbjct: 134 KAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSP 193
Query: 364 PLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIV------KSHDFWLLFDDD 417
+ + Y LV V H + V +H W LF+D
Sbjct: 194 KAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDF 253
Query: 418 VVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQ 450
+V + E YIL YQ
Sbjct: 254 LVTPVS------------------ELAYILLYQ 268
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal
transduction mechanisms].
Length = 262
Score = 36.6 bits (85), Expect = 0.020
Identities = 42/210 (20%), Positives = 74/210 (35%), Gaps = 36/210 (17%)
Query: 260 KNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDE-FDNYMQQDAHEFLN 318
N+ LL +AD + H G +A K + L + DE N + + E L
Sbjct: 31 PNENGNLLLLFAVAD---GMGGHA--AGEVASKLAVEALARLFDETNFNSLNESLEELLK 85
Query: 319 FLINHINEKCMKVKKL-----PM---ILALHLKRFK-----------YMDKMNRHVKVS- 358
I NE + +L M ++ L ++ K Y+ + +++
Sbjct: 86 EAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTE 145
Query: 359 -HRVVFPLELRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVKSH----DFWLL 413
H +V LE R ++A + R L + G I + DF LL
Sbjct: 146 DHSLVNRLEQRGIITPEEARSHPRRNALTRAL-----GDFDLLEPDITELELEPGDFLLL 200
Query: 414 FDDDVVDKIDQSTIEDFFGLTSDHQKSSET 443
D + D + I D + Q++++
Sbjct: 201 CSDGLWDVVSDDEIVDILKNSETPQEAADK 230
>gnl|CDD|213982 cd12107, Hemerythrin, Hemerythrin. Hemerythrin (Hr) is a non-heme
diiron oxygen transport protein found in four marine
invertebrate phyla including priapulida, brachiopoda,
sipunculida, and annelida, as well as in protozoa.
Myohemerythrin (Mhr), a hemerythrin homolog, is found in
the muscle tissue of sipunculids as well as in
polycheate and oligocheate annelids. In addition to
oxygen transport, Mhr proteins are involved in cadmium
fixation and host anti-bacterial defense. Hr and Mhr
proteins have the same "four alpha helix bundle" motif
and active site structure. Hr forms oligomers, the
octameric form being most prevalent, while Mhr is
monomeric.
Length = 113
Score = 27.7 bits (62), Expect = 4.8
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 292 KKFITRLRKEKDEFDNYMQQDAHEFLNF----LINHINE 326
++F+ +L + K + + A E L+F L+NHI
Sbjct: 68 RRFLEKLEELKARLEAGDLELAEELLDFLKDWLVNHILG 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,351,708
Number of extensions: 2216665
Number of successful extensions: 1890
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1806
Number of HSP's successfully gapped: 88
Length of query: 470
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 370
Effective length of database: 6,502,202
Effective search space: 2405814740
Effective search space used: 2405814740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)