RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2130
(470 letters)
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 89.4 bits (220), Expect = 5e-20
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKN-----KETLLSCLADLFHNIAT 281
GL N GNTCY N+ +Q + +D + Y + + + + + L DLF ++
Sbjct: 6 GLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSM-- 63
Query: 282 HKKKVGSIAPKKFITRLRK------EKDEFDNYMQQDAHEFLNFLINHINEKCMKVKK 333
K SI P + L EK E Y+QQDA+E ++ + +K ++
Sbjct: 64 -DKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIED 120
Score = 71.3 bits (173), Expect = 4e-14
Identities = 43/175 (24%), Positives = 59/175 (33%), Gaps = 55/175 (31%)
Query: 328 CMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHL--------------- 372
K+ +LP L + + RF Y +K + + KV V FPL L ++ L
Sbjct: 214 SSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSK 273
Query: 373 ----------------------------------SDDAVNPDRMYNLVAVVIHCGSGPNR 398
D N Y+L AV+ H G +
Sbjct: 274 FKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSS 333
Query: 399 GHYISIVK-SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGYILFYQSR 452
GHY+S VK D W+ FDDD V + I G Y+L Y R
Sbjct: 334 GHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSG-----GGDWHIAYVLLYGPR 383
Score = 42.8 bits (99), Expect = 7e-05
Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 9/132 (6%)
Query: 72 DEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEEPTW 131
E Y+QQDA+E ++ + + + + S ++ S+ +++ ++ +
Sbjct: 90 GEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSAS-------AATPSKKKSL 142
Query: 132 VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSDNKF 191
+ + F + KC E LQ+ N + G L +
Sbjct: 143 IDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLK--LRLQEEITK 200
Query: 192 KCDNCASYQEAQ 203
+
Sbjct: 201 QSPTLQRNALYI 212
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 86.3 bits (212), Expect = 4e-19
Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 5/165 (3%)
Query: 212 KEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSC 271
+ + P GL N GNTCY NS+LQ L D ++ N+ LL
Sbjct: 2 RNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGH 61
Query: 272 LADLFHNIAT-----HKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINE 326
++ + I+PK F + K D+F Y QQD+ E L FL++ ++E
Sbjct: 62 KGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHE 121
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFH 371
K + + ++ + + LF
Sbjct: 122 DLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQ 166
Score = 75.1 bits (183), Expect = 2e-15
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 328 CMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVA 387
+++ KLP +L +HLKRF D + + L L N + YNL +
Sbjct: 236 KIEIWKLPPVLLVHLKRFS-YDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFS 294
Query: 388 VVIHCGSGPNRGHYISIVK--SHDFWLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
V H G + GHY + K + W FDD V I S+++ S Y
Sbjct: 295 VSNHYGG-LDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK------------SSAAY 341
Query: 446 ILFYQS 451
ILFY S
Sbjct: 342 ILFYTS 347
Score = 65.9 bits (159), Expect = 2e-12
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Query: 69 CSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPD---GGGGDNHSSSG 125
+D+F Y QQD+ E L FL++ ++E + + K + +
Sbjct: 95 KINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHK 154
Query: 126 FEEPTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQ--NTSITQCLRGFSSTE 183
+ + +FQG S +CL C S E F L + + ++ CLR FS E
Sbjct: 155 QLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEE 214
Query: 184 TLCSDNKFKCDNCASYQEA 202
L +N+F C +C + +++
Sbjct: 215 KLTDNNRFYCSHCRARRDS 233
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 85.9 bits (211), Expect = 5e-19
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 6/152 (3%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKET-----LLSCLADLFHNI 279
GL N GNTC+ NS+LQ L + RD L+ + + L+ A L I
Sbjct: 3 LAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTI 62
Query: 280 ATHKKKVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILA 339
T ++P +F T++++ F Y QQDA EFL FL++ ++ + +V P
Sbjct: 63 WTSSPN-DVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNP 121
Query: 340 LHLKRFKYMDKMNRHVKVSHRVVFPLELRLFH 371
+L +K + + LF
Sbjct: 122 ENLDHLPDDEKGRQMWRKYLEREDSRIGDLFV 153
Score = 65.9 bits (159), Expect = 2e-12
Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 17/125 (13%)
Query: 328 CMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLFHLSDDAVNPDRMYNLVA 387
+++ P IL LHLKRF + V FPL +YNL A
Sbjct: 225 KFSIQRFPKILVLHLKRFSESRIRTSKLT--TFVNFPLRDLDLREFASENTNHAVYNLYA 282
Query: 388 VVIHCGSGPNRGHYISIVKSHDF--WLLFDDDVVDKIDQSTIEDFFGLTSDHQKSSETGY 445
V H G+ GHY + +S W F+D V + S + + Y
Sbjct: 283 VSNHSGT-TMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVR------------TSDAY 329
Query: 446 ILFYQ 450
+LFY+
Sbjct: 330 LLFYE 334
Score = 62.1 bits (149), Expect = 4e-11
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Query: 69 CSSDEFDNYMQQDAHEFLNFLINHINEVI--LSERPQSNAKSKLSAPDGGGGDNHSSSGF 126
+ F Y QQDA EFL FL++ ++ + ++ RP+SN ++ PD G
Sbjct: 82 RYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYL 141
Query: 127 EEPTW-VHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIK----QNTSITQCLRGFSS 181
E + ++F G L S C +C S+ + F+DL + I ++ C+R F+
Sbjct: 142 EREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTK 201
Query: 182 TETLCSDNKFKCDNCASYQEA 202
+ L D K C C +
Sbjct: 202 EDVLDGDEKPTCCRCRGRKRC 222
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 82.4 bits (202), Expect = 6e-18
Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 5/139 (3%)
Query: 225 YFGLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKK 284
Y GL N G TCY NS+LQ L+F R V + + +++ L +F+ + K
Sbjct: 6 YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDK 65
Query: 285 KVGSIAPKKFITRLRKEKDEFDNYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKR 344
VG KK E D++MQ D E L++++ K I L +
Sbjct: 66 PVG---TKKLTKSFGWET--LDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGK 120
Query: 345 FKYMDKMNRHVKVSHRVVF 363
+ S R
Sbjct: 121 MVSYIQCKEVDYRSDRRED 139
Score = 68.2 bits (165), Expect = 4e-13
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Query: 327 KCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLELRLF-HLSDDAVNPDRMYNL 385
K +K LP +L L L RF Y + ++++K++ R FP +L L L Y L
Sbjct: 184 KGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYIL 243
Query: 386 VAVVIHCGSGPNRGHYISIV--KSHDFWLLFDDDVVDKIDQST-IEDFFGLTSDH--QKS 440
AV++H G + GHY+ + K W FDDDVV + + IE +G D +
Sbjct: 244 HAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRH 302
Query: 441 SETGYILFYQSRDSTD 456
Y+L Y
Sbjct: 303 CTNAYMLVYIRESKLS 318
Score = 38.5 bits (88), Expect = 0.001
Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 26/128 (20%)
Query: 69 CSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEE 128
+ D++MQ D E L++++ + G
Sbjct: 76 FGWETLDSFMQHDVQELCRVLLDNVE--------------------------NKMKGTCV 109
Query: 129 PTWVHEIFQGILTSETKCLNCETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLCSD 188
+ ++F+G + S +C + S + ED++D+Q+ IK +I + + + E L D
Sbjct: 110 EGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGD 169
Query: 189 NKFKCDNC 196
NK+
Sbjct: 170 NKYDAGEH 177
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 79.8 bits (195), Expect = 7e-17
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 18/120 (15%)
Query: 227 GLVNFGNTCYSNSVLQALYFCKPFRDRVLEYKAKNKKNK---------ETLLSCLADLFH 277
G N GNTCY N+ LQALY RD +L Y + + ++ + F
Sbjct: 8 GFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFE 67
Query: 278 NIATHKKKVGSIAPKKFITRLRK-------EKDEFDNYMQQDAHEFLNFLINHINEKCMK 330
N+ K S+ P + LRK + Y QQDA E L + ++
Sbjct: 68 NLQNKSFK--SVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD 125
Score = 79.1 bits (193), Expect = 1e-16
Identities = 50/390 (12%), Positives = 95/390 (24%), Gaps = 93/390 (23%)
Query: 69 CSSDEFDNYMQQDAHEFLNFLINHINEVILSERPQSNAKSKLSAPDGGGGDNHSSSGFEE 128
+ Y QQDA E L + ++
Sbjct: 95 ERDSQGGFYKQQDAEELFTQLFHSMSI-------------------------------VF 123
Query: 129 PTWVHEIFQGILTSETKCLNC--ETVSSKDEDFFDLQVDIKQNTSITQCLRGFSSTETLC 186
E F+ + K + ++E LQ I T+ + E +
Sbjct: 124 GDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEKIE 183
Query: 187 SDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQALYF 246
+ D + P V F +N
Sbjct: 184 K----RSDLTGANSIYSVEKKI---------SRLPKFLTVQYVRFFWKRSTNK------- 223
Query: 247 CKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRKEKDEFD 306
I + +T +
Sbjct: 224 -----------------------------KSKILRKVVFPFQLDVADMLTPEYAAEKVKV 254
Query: 307 NYMQQDAHEFLNFLINHINEKCMKVKKLPMILALHLKRFKYMDKMNRHVKVSHRVVFPLE 366
+ + N I + + ++++ +N K + +
Sbjct: 255 RDELRKVEKEKNEKEREIKRR-KFDPSSSENVMTPREQYETQVALNESEKDQW--LEEYK 311
Query: 367 LRLFHLSDDAVNPDRMYNLVAVVIHCGSGPNRGHYISIVK---SHDFWLLFDDDVVDKID 423
+ NP +YNL+ V+ H G+ GHY + ++ + W F+DD V ++
Sbjct: 312 KHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVE 371
Query: 424 QSTIEDFFGLTSDHQKSSETGYILFYQSRD 453
+ IE G S++ IL Y+
Sbjct: 372 KEKIESLAG-----GGESDSALILMYKGFG 396
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 29.0 bits (65), Expect = 0.69
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 262 KKNKETLLSCLADLFHNIATHKKKVGSIAPKKFIT 296
+ K+T+ + + +A K V + KK +
Sbjct: 22 QDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLM 56
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 260
Score = 28.8 bits (63), Expect = 1.3
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 10/128 (7%)
Query: 185 LCSDNKFKCDNCASYQEAQGPNISALEKEIGPDRFPPNERYFGLVNFGNTCYSNSVLQAL 244
D F Y+ AL + +G PP+ R + +
Sbjct: 131 FTGDTLFVAGCGKFYEGTADEMCKALLEVLGR--LPPDTRVYCGHEYTINNL-KFARHVE 187
Query: 245 YFCKPFRDRVLEYKAKNKKNKETLLSCLAD-LFHNI------ATHKKKVGSIAPKKFITR 297
R+++ K K + T+ S LA+ +N T ++ G P +
Sbjct: 188 PGNAAIREKLAWAKEKYSIGEPTVPSTLAEEFTYNPFMRVREKTVQQHAGETDPVTTMRA 247
Query: 298 LRKEKDEF 305
+R+EKD+F
Sbjct: 248 VRREKDQF 255
>d2b8ua1 a.26.1.2 (A:1-129) Interleukin-4 (IL-4) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 129
Score = 26.9 bits (59), Expect = 3.1
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 235 CYSNSVLQALYFCKPFRDRVLEYKAKNKKNKETLLSCLADLFHNIAT-HKKKVGSIAP-- 291
C + +VL+ Y R L A+ + L+ L L N+ +
Sbjct: 46 CRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKEAN 105
Query: 292 ----KKFITRLR---KEK 302
+ F+ RL+ +EK
Sbjct: 106 QSTLENFLERLKTIMREK 123
>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related
At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 215
Score = 26.3 bits (57), Expect = 6.4
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 13/58 (22%)
Query: 266 ETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRK---EKDEFDNYMQQDAHEFLNFL 320
+T + ++ H F+ +R + F ++ QD F+
Sbjct: 4 DTWIDKHRSIYTAATRHA----------FVVSIRDGSVDLSSFRTWLGQDYLFVRRFV 51
>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 206
Score = 26.3 bits (57), Expect = 6.4
Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 19/96 (19%)
Query: 266 ETLLSCLADLFHNIATHKKKVGSIAPKKFITRLRK---EKDEFDNYMQQDAHEFLNFLIN 322
E L+ +++ HK F+ + + +K+ F+ ++ D + F+ N
Sbjct: 4 EELIKENENIWRRFLPHK----------FLIEMAENTIKKENFEKWLVNDYY----FVKN 49
Query: 323 HINEKCMKVKKLP--MILALHLKRFKYMDKMNRHVK 356
+ + + K P ++ + ++ K
Sbjct: 50 ALRFMALLMAKAPDDLLPFFAESIYYISKELEMFEK 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,764,945
Number of extensions: 84047
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 26
Length of query: 470
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 381
Effective length of database: 1,185,626
Effective search space: 451723506
Effective search space used: 451723506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)