BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2132
(48 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UX0|F Chain F, Structure Of The Oligomerisation Domain Of Calcium-
Calmodulin Dependent Protein Kinase Ii Gamma
pdb|2UX0|A Chain A, Structure Of The Oligomerisation Domain Of Calcium-
Calmodulin Dependent Protein Kinase Ii Gamma
pdb|2UX0|B Chain B, Structure Of The Oligomerisation Domain Of Calcium-
Calmodulin Dependent Protein Kinase Ii Gamma
pdb|2UX0|C Chain C, Structure Of The Oligomerisation Domain Of Calcium-
Calmodulin Dependent Protein Kinase Ii Gamma
pdb|2UX0|D Chain D, Structure Of The Oligomerisation Domain Of Calcium-
Calmodulin Dependent Protein Kinase Ii Gamma
pdb|2UX0|E Chain E, Structure Of The Oligomerisation Domain Of Calcium-
Calmodulin Dependent Protein Kinase Ii Gamma
Length = 143
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 45/48 (93%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FHKFYF+N++ KN K ++TTILNP+VH++G+DAACIAY+RLTQY+D
Sbjct: 57 MDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYID 104
>pdb|2W2C|A Chain A, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|B Chain B, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|C Chain C, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|D Chain D, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|E Chain E, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|F Chain F, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|G Chain G, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|H Chain H, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|I Chain I, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|J Chain J, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|K Chain K, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|L Chain L, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|M Chain M, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|N Chain N, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
Length = 144
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 43/48 (89%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FH+FYF+N + K+ K ++T ILNP+VHL+GDDAACIAY+RLTQYMD
Sbjct: 61 MDFHRFYFENALSKSNKPIHTIILNPHVHLVGDDAACIAYIRLTQYMD 108
>pdb|1HKX|A Chain A, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|B Chain B, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|C Chain C, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|D Chain D, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|E Chain E, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|F Chain F, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|G Chain G, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|H Chain H, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|I Chain I, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|J Chain J, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|K Chain K, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|L Chain L, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|M Chain M, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|N Chain N, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
Length = 147
Score = 79.7 bits (195), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 44/48 (91%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
++FH+FYF+N+ +N K V+TTILNP++HL+GD++ACIAY+R+TQY+D
Sbjct: 61 LDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLD 108
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 79.7 bits (195), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 44/48 (91%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
++FH+FYF+N+ +N K V+TTILNP++HL+GD++ACIAY+R+TQY+D
Sbjct: 362 LDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLD 409
>pdb|2F86|B Chain B, The Association Domain Of C. Elegans Camkii
pdb|2F86|D Chain D, The Association Domain Of C. Elegans Camkii
pdb|2F86|F Chain F, The Association Domain Of C. Elegans Camkii
pdb|2F86|J Chain J, The Association Domain Of C. Elegans Camkii
pdb|2F86|H Chain H, The Association Domain Of C. Elegans Camkii
pdb|2F86|N Chain N, The Association Domain Of C. Elegans Camkii
pdb|2F86|L Chain L, The Association Domain Of C. Elegans Camkii
Length = 143
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 40/48 (83%), Gaps = 3/48 (6%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
+EFH+FYFD G V+TT+LNPNVH++G+DAAC+AYV+LTQ++D
Sbjct: 56 IEFHRFYFD---GNRKNQVHTTMLNPNVHIIGEDAACVAYVKLTQFLD 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,491,588
Number of Sequences: 62578
Number of extensions: 39656
Number of successful extensions: 56
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 5
length of query: 48
length of database: 14,973,337
effective HSP length: 21
effective length of query: 27
effective length of database: 13,659,199
effective search space: 368798373
effective search space used: 368798373
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)