BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2132
(48 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00168|KCC2A_DROME Calcium/calmodulin-dependent protein kinase type II alpha chain
OS=Drosophila melanogaster GN=CaMKII PE=1 SV=1
Length = 530
Score = 95.9 bits (237), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/48 (81%), Positives = 48/48 (100%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
++FHKFYF+NV+GKNCKA+NTTILNP+VHLLG++AACIAYVRLTQY+D
Sbjct: 435 IDFHKFYFENVLGKNCKAINTTILNPHVHLLGEEAACIAYVRLTQYID 482
>sp|P11730|KCC2G_RAT Calcium/calmodulin-dependent protein kinase type II subunit gamma
OS=Rattus norvegicus GN=Camk2g PE=2 SV=1
Length = 527
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 45/48 (93%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FHKFYF+N++ KN K ++TTILNP+VH++G+DAACIAY+RLTQY+D
Sbjct: 441 MDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYID 488
>sp|Q923T9|KCC2G_MOUSE Calcium/calmodulin-dependent protein kinase type II subunit gamma
OS=Mus musculus GN=Camk2g PE=1 SV=1
Length = 529
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 45/48 (93%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FHKFYF+N++ KN K ++TTILNP+VH++G+DAACIAY+RLTQY+D
Sbjct: 443 MDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYID 490
>sp|Q13555|KCC2G_HUMAN Calcium/calmodulin-dependent protein kinase type II subunit gamma
OS=Homo sapiens GN=CAMK2G PE=1 SV=3
Length = 558
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 45/48 (93%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FHKFYF+N++ KN K ++TTILNP+VH++G+DAACIAY+RLTQY+D
Sbjct: 472 MDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYID 519
>sp|P08413|KCC2B_RAT Calcium/calmodulin-dependent protein kinase type II subunit beta
OS=Rattus norvegicus GN=Camk2b PE=1 SV=1
Length = 542
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/48 (66%), Positives = 45/48 (93%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FH+FYF+N++ KN K ++TTILNP+VH++G+DAACIAY+RLTQY+D
Sbjct: 456 MDFHRFYFENLLAKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYID 503
>sp|P28652|KCC2B_MOUSE Calcium/calmodulin-dependent protein kinase type II subunit beta
OS=Mus musculus GN=Camk2b PE=1 SV=2
Length = 542
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/48 (66%), Positives = 45/48 (93%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FH+FYF+N++ KN K ++TTILNP+VH++G+DAACIAY+RLTQY+D
Sbjct: 456 MDFHRFYFENLLAKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYID 503
>sp|Q13554|KCC2B_HUMAN Calcium/calmodulin-dependent protein kinase type II subunit beta
OS=Homo sapiens GN=CAMK2B PE=1 SV=3
Length = 666
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/48 (66%), Positives = 45/48 (93%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FH+FYF+N++ KN K ++TTILNP+VH++G+DAACIAY+RLTQY+D
Sbjct: 580 MDFHRFYFENLLAKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYID 627
>sp|Q3MHJ9|KCC2B_BOVIN Calcium/calmodulin-dependent protein kinase type II subunit beta
OS=Bos taurus GN=CAMK2B PE=2 SV=1
Length = 542
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/48 (66%), Positives = 45/48 (93%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FH+FYF+N++ KN K ++TTILNP+VH++G+DAACIAY+RLTQY+D
Sbjct: 456 MDFHRFYFENLLAKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYID 503
>sp|Q95266|KCC2D_PIG Calcium/calmodulin-dependent protein kinase type II subunit delta
OS=Sus scrofa GN=CAMK2D PE=2 SV=1
Length = 499
Score = 83.2 bits (204), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 43/48 (89%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FH+FYF+N + K+ K ++T ILNP+VHL+GDDAACIAY+RLTQYMD
Sbjct: 392 MDFHRFYFENALSKSNKPIHTIILNPHVHLVGDDAACIAYIRLTQYMD 439
>sp|Q6PHZ2|KCC2D_MOUSE Calcium/calmodulin-dependent protein kinase type II subunit delta
OS=Mus musculus GN=Camk2d PE=1 SV=1
Length = 499
Score = 83.2 bits (204), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 43/48 (89%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FH+FYF+N + K+ K ++T ILNP+VHL+GDDAACIAY+RLTQYMD
Sbjct: 392 MDFHRFYFENALSKSNKPIHTIILNPHVHLVGDDAACIAYIRLTQYMD 439
>sp|Q13557|KCC2D_HUMAN Calcium/calmodulin-dependent protein kinase type II subunit delta
OS=Homo sapiens GN=CAMK2D PE=1 SV=3
Length = 499
Score = 83.2 bits (204), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 43/48 (89%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FH+FYF+N + K+ K ++T ILNP+VHL+GDDAACIAY+RLTQYMD
Sbjct: 392 MDFHRFYFENALSKSNKPIHTIILNPHVHLVGDDAACIAYIRLTQYMD 439
>sp|Q5ZKI0|KCC2D_CHICK Calcium/calmodulin-dependent protein kinase type II delta chain
OS=Gallus gallus GN=CAMK2D PE=2 SV=1
Length = 479
Score = 83.2 bits (204), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 43/48 (89%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FH+FYF+N + K+ K ++T ILNP+VHL+GDDAACIAY+RLTQYMD
Sbjct: 392 MDFHRFYFENALSKSNKPIHTIILNPHVHLVGDDAACIAYIRLTQYMD 439
>sp|Q2HJF7|KCC2D_BOVIN Calcium/calmodulin-dependent protein kinase type II subunit delta
OS=Bos taurus GN=CAMK2D PE=2 SV=1
Length = 488
Score = 83.2 bits (204), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 43/48 (89%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FH+FYF+N + K+ K ++T ILNP+VHL+GDDAACIAY+RLTQYMD
Sbjct: 402 MDFHRFYFENALSKSNKPIHTIILNPHVHLVGDDAACIAYIRLTQYMD 449
>sp|O77708|KCC2D_RABIT Calcium/calmodulin-dependent protein kinase type II subunit delta
OS=Oryctolagus cuniculus GN=CAMK2D PE=2 SV=2
Length = 533
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/48 (66%), Positives = 43/48 (89%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FH+FYF+N + K+ K ++T ILNP+VHL+G+DAACIAY+RLTQYMD
Sbjct: 426 MDFHRFYFENALSKSNKPIHTIILNPHVHLVGEDAACIAYIRLTQYMD 473
>sp|P15791|KCC2D_RAT Calcium/calmodulin-dependent protein kinase type II subunit delta
OS=Rattus norvegicus GN=Camk2d PE=1 SV=1
Length = 533
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 42/48 (87%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FH+FYF+N + K K ++T ILNP+VHL+GDDAACIAY+RLTQYMD
Sbjct: 426 MDFHRFYFENALPKINKPIHTIILNPHVHLVGDDAACIAYIRLTQYMD 473
>sp|Q9DG02|KCC2D_XENLA Calcium/calmodulin-dependent protein kinase type II delta chain
OS=Xenopus laevis GN=camk2d PE=2 SV=1
Length = 475
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/48 (66%), Positives = 43/48 (89%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FH+FYF+N + K+ K V+T ILNP+VHL+G+DAACIAY+RLTQY+D
Sbjct: 390 MDFHRFYFENALSKSNKPVHTIILNPHVHLIGEDAACIAYIRLTQYLD 437
>sp|P11275|KCC2A_RAT Calcium/calmodulin-dependent protein kinase type II subunit alpha
OS=Rattus norvegicus GN=Camk2a PE=1 SV=1
Length = 478
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 44/48 (91%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
++FH+FYF+N+ +N K V+TTILNP++HL+GD++ACIAY+R+TQY+D
Sbjct: 392 LDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLD 439
>sp|Q5RCC4|KCC2A_PONAB Calcium/calmodulin-dependent protein kinase type II subunit alpha
OS=Pongo abelii GN=CAMK2A PE=2 SV=2
Length = 478
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 44/48 (91%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
++FH+FYF+N+ +N K V+TTILNP++HL+GD++ACIAY+R+TQY+D
Sbjct: 392 LDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLD 439
>sp|P11798|KCC2A_MOUSE Calcium/calmodulin-dependent protein kinase type II subunit alpha
OS=Mus musculus GN=Camk2a PE=1 SV=2
Length = 478
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 44/48 (91%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
++FH+FYF+N+ +N K V+TTILNP++HL+GD++ACIAY+R+TQY+D
Sbjct: 392 LDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLD 439
>sp|Q9UQM7|KCC2A_HUMAN Calcium/calmodulin-dependent protein kinase type II subunit alpha
OS=Homo sapiens GN=CAMK2A PE=1 SV=2
Length = 478
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 44/48 (91%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
++FH+FYF+N+ +N K V+TTILNP++HL+GD++ACIAY+R+TQY+D
Sbjct: 392 LDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLD 439
>sp|Q6DGS3|KC2D2_DANRE Calcium/calmodulin-dependent protein kinase type II delta 2 chain
OS=Danio rerio GN=camk2d2 PE=2 SV=2
Length = 554
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/47 (65%), Positives = 41/47 (87%)
Query: 2 EFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
+FH+FYF+N + K K V+T +LNP+VHL+G+DAACIAY+RLTQYMD
Sbjct: 469 DFHRFYFENALSKGNKPVHTILLNPHVHLIGEDAACIAYIRLTQYMD 515
>sp|Q6DEH3|KC2D1_DANRE Calcium/calmodulin-dependent protein kinase type II delta 1 chain
OS=Danio rerio GN=camk2d1 PE=2 SV=2
Length = 491
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/47 (63%), Positives = 41/47 (87%)
Query: 2 EFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
+FH+FYF+N + K K ++T +LNP+VHL+G+DAACIAY+RLTQYMD
Sbjct: 406 DFHRFYFENSLSKGHKPIHTILLNPHVHLIGEDAACIAYIRLTQYMD 452
>sp|O62305|KCC2D_CAEEL Calcium/calmodulin-dependent protein kinase type II
OS=Caenorhabditis elegans GN=unc-43 PE=1 SV=2
Length = 720
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 40/48 (83%), Gaps = 3/48 (6%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
+EFH+FYFD G V+TT+LNPNVH++G+DAAC+AYV+LTQ++D
Sbjct: 633 IEFHRFYFD---GNRKNQVHTTMLNPNVHIIGEDAACVAYVKLTQFLD 677
>sp|A8WXF6|KCC2D_CAEBR Calcium/calmodulin-dependent protein kinase type II
OS=Caenorhabditis briggsae GN=unc-43 PE=3 SV=1
Length = 533
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 40/48 (83%), Gaps = 3/48 (6%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
+EFH+FYFD G V+TT+LNPNVH++G+DAAC+AYV+LTQ++D
Sbjct: 446 IEFHRFYFD---GNRKNQVHTTMLNPNVHIIGEDAACVAYVKLTQFLD 490
>sp|A8EXA5|GCP_RICCK Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Rickettsia canadensis (strain McKiel) GN=gcp PE=3
SV=1
Length = 342
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 7 YFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQY 46
Y ++ K ++ P +HL D+AA IAY L +Y
Sbjct: 282 YLQEILSSGAKTYGYQLIYPPIHLCTDNAAMIAYAGLERY 321
>sp|Q88MG8|LPXA_PSEPK Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
O-acyltransferase OS=Pseudomonas putida (strain KT2440)
GN=lpxA PE=3 SV=1
Length = 258
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQY 46
M + D+V+G +C VN T L +VH +GD A Y + QY
Sbjct: 114 MAYAHIGHDSVIGNHCILVNNTALAGHVH-VGDWAILSGYTLVHQY 158
>sp|B0KSB1|LPXA_PSEPG Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
O-acyltransferase OS=Pseudomonas putida (strain GB-1)
GN=lpxA PE=3 SV=1
Length = 258
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQY 46
M + D+V+G +C VN T L +VH +GD A Y + QY
Sbjct: 114 MAYAHIGHDSVIGNHCILVNNTALAGHVH-VGDWAILSGYTLVHQY 158
>sp|A5W838|LPXA_PSEP1 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
O-acyltransferase OS=Pseudomonas putida (strain F1 /
ATCC 700007) GN=lpxA PE=3 SV=1
Length = 258
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQY 46
M + D+V+G +C VN T L +VH +GD A Y + QY
Sbjct: 114 MAYAHIGHDSVIGNHCILVNNTALAGHVH-VGDWAILSGYTLVHQY 158
>sp|Q1I638|LPXA_PSEE4 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
O-acyltransferase OS=Pseudomonas entomophila (strain
L48) GN=lpxA PE=3 SV=1
Length = 258
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQY 46
M + D+V+G +C VN T L +VH +GD A Y + QY
Sbjct: 114 MAYAHIGHDSVIGNHCILVNNTALAGHVH-VGDWAILSGYTLVHQY 158
>sp|A8GM49|GCP_RICAH Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Rickettsia akari (strain Hartford) GN=gcp PE=3 SV=1
Length = 386
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 7 YFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQY 46
Y ++ K ++ P +HL D+AA IAY L +Y
Sbjct: 324 YLQEILSNCAKTYGYQLIYPPIHLCTDNAAMIAYAGLERY 363
>sp|A8GQJ1|GCP_RICRS Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Rickettsia rickettsii (strain Sheila Smith) GN=gcp
PE=3 SV=1
Length = 344
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 7 YFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQY 46
Y ++ K ++ P +HL D+AA IAY L +Y
Sbjct: 282 YLQKILSSCAKTYGYRLIYPPIHLCTDNAAMIAYAGLERY 321
>sp|B0BVX7|GCP_RICRO Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Rickettsia rickettsii (strain Iowa) GN=gcp PE=3 SV=1
Length = 344
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 7 YFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQY 46
Y ++ K ++ P +HL D+AA IAY L +Y
Sbjct: 282 YLQKILSSCAKTYGYRLIYPPIHLCTDNAAMIAYAGLERY 321
>sp|Q92JK6|GCP_RICCN Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7)
GN=gcp PE=3 SV=1
Length = 344
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 7 YFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQY 46
Y ++ K ++ P +HL D+AA IAY L +Y
Sbjct: 282 YLQKILSSCAKTYGYRLIYPPIHLCTDNAAMIAYAGLERY 321
>sp|C4K157|GCP_RICPU Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Rickettsia peacockii (strain Rustic) GN=gcp PE=3 SV=1
Length = 344
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 7 YFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQY 46
Y ++ K ++ P +HL D+AA IAY L +Y
Sbjct: 282 YLQKILSSCAKTYGYRLIYPPIHLCTDNAAMIAYAGLERY 321
>sp|A8F0E3|GCP_RICM5 Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Rickettsia massiliae (strain Mtu5) GN=gcp PE=3 SV=1
Length = 344
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 7 YFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQY 46
Y ++ K ++ P +HL D+AA IAY L +Y
Sbjct: 282 YLQEILSSCAKTYGYRLIYPPIHLCTDNAAMIAYAGLERY 321
>sp|C3PM69|GCP_RICAE Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Rickettsia africae (strain ESF-5) GN=gcp PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 7 YFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQY 46
Y ++ K ++ P +HL D+AA IAY L +Y
Sbjct: 282 YLQKILSSCAKIYGYRLIYPPIHLCTDNAAMIAYAGLERY 321
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,261,305
Number of Sequences: 539616
Number of extensions: 469971
Number of successful extensions: 1053
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1019
Number of HSP's gapped (non-prelim): 36
length of query: 48
length of database: 191,569,459
effective HSP length: 21
effective length of query: 27
effective length of database: 180,237,523
effective search space: 4866413121
effective search space used: 4866413121
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)