Query psy2132
Match_columns 48
No_of_seqs 69 out of 71
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 16:52:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3soa_A Calcium/calmodulin-depe 99.9 3E-24 1E-28 144.9 2.4 48 1-48 362-409 (444)
2 2f86_B Hypothetical protein K1 99.3 1.8E-12 6E-17 78.0 3.5 44 1-47 56-99 (143)
3 3ke7_A Putative ketosteroid is 98.8 7.5E-10 2.6E-14 66.5 1.1 43 1-47 57-99 (134)
4 2ux0_A Calcium-calmodulin depe 98.3 2.8E-07 9.6E-12 52.5 2.9 46 2-47 58-103 (143)
5 3fsd_A NTF2-like protein of un 94.8 0.012 4E-07 33.3 1.5 27 17-44 68-94 (134)
6 2r4i_A Uncharacterized protein 92.3 0.11 3.8E-06 27.7 2.7 27 17-43 60-86 (123)
7 3f7s_A Uncharacterized NTF2-li 88.0 0.21 7.2E-06 27.7 1.4 28 17-44 67-94 (142)
8 3soy_A NTF2-like superfamily p 42.1 45 0.0016 18.7 4.9 23 18-41 71-94 (145)
9 2owp_A Hypothetical protein BX 38.0 30 0.001 19.4 2.8 19 22-40 72-90 (129)
10 2ns6_A Mobilization protein A; 37.8 8.7 0.0003 23.7 0.5 9 24-32 116-124 (185)
11 3bt4_A Amfpi-1, fungal proteas 36.6 9.9 0.00034 21.5 0.5 16 27-42 43-58 (86)
12 2gxf_A Hypothetical protein YY 35.4 31 0.001 18.7 2.5 24 21-44 65-88 (142)
13 2faf_A Phosphoenolpyruvate car 31.6 27 0.00093 25.9 2.3 34 5-38 263-301 (608)
14 2rfr_A Uncharacterized protein 30.3 68 0.0023 17.2 4.5 27 19-45 81-107 (155)
15 3moe_A Phosphoenolpyruvate car 27.5 20 0.00069 26.6 1.0 34 5-38 279-317 (624)
16 3ksp_A Calcium/calmodulin-depe 27.5 56 0.0019 18.7 2.8 19 22-41 69-87 (129)
17 2rgq_A Domain of unknown funct 27.5 76 0.0026 17.2 3.3 25 21-45 71-95 (144)
18 3ef8_A Putative scyalone dehyd 27.4 67 0.0023 17.7 3.1 24 21-44 72-96 (150)
19 4gb5_A Uncharacterized protein 27.3 83 0.0028 17.3 4.7 27 18-44 74-100 (159)
20 3bb9_A Putative orphan protein 20.4 1.2E+02 0.004 16.5 3.8 21 19-40 89-109 (148)
21 1tif_A IF3-N, translation init 20.0 37 0.0013 18.6 1.0 19 18-36 6-24 (78)
No 1
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.89 E-value=3e-24 Score=144.92 Aligned_cols=48 Identities=60% Similarity=1.245 Sum_probs=46.6
Q ss_pred CcceeeeeeccCCcCCceeeeEEeCCceEEecCceeEEEEeeeeeecC
Q psy2132 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48 (48)
Q Consensus 1 mdFHkFyFen~~~~~~~~~~ttilnP~V~l~g~~~A~iaY~rLtq~~d 48 (48)
|||||||||+.|+++.+++++||+|||||++||++||+||+||||++|
T Consensus 362 ~~~~~f~~~~~~~~~~~~~~~~~~~p~v~~~~~~~a~~~y~~~~~~~~ 409 (444)
T 3soa_A 362 LDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLD 409 (444)
T ss_dssp HHHTHHHHHHTSTTCSSCCEEEEEEEEEEEETTTEEEEEEEEEEEEEC
T ss_pred cchhhhhhhcccccCCCcceEeecCCceEEecCcceeeeeeeeeeeec
Confidence 589999999999999999999999999999999999999999999997
No 2
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=99.29 E-value=1.8e-12 Score=78.01 Aligned_cols=44 Identities=61% Similarity=1.216 Sum_probs=38.8
Q ss_pred CcceeeeeeccCCcCCceeeeEEeCCceEEecCceeEEEEeeeeeec
Q psy2132 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYM 47 (48)
Q Consensus 1 mdFHkFyFen~~~~~~~~~~ttilnP~V~l~g~~~A~iaY~rLtq~~ 47 (48)
|+|||||||+ ++.++.+++++||+|++.|||+|+++|+|++|..
T Consensus 56 ~~~~r~~f~~---~~~~~~~~~~~~~~V~~~g~d~Av~~y~~~~~~~ 99 (143)
T 2f86_B 56 IEFHRFYFDG---NRKNQVHTTMLNPNVHIIGEDAACVAYVKLTQFL 99 (143)
T ss_dssp THHHHTTSSS---CSCCSCEEEEEEEEEEEETTTEEEEEEEEEEEEE
T ss_pred HHHHHHHHhc---ccCCcceeEEEcceEEEeCCCEEEEEEEeeeeec
Confidence 6899999998 2346778999999999999889999999999975
No 3
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=98.82 E-value=7.5e-10 Score=66.53 Aligned_cols=43 Identities=16% Similarity=0.363 Sum_probs=34.9
Q ss_pred CcceeeeeeccCCcCCceeeeEEeCCceEEecCceeEEEEeeeeeec
Q psy2132 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYM 47 (48)
Q Consensus 1 mdFHkFyFen~~~~~~~~~~ttilnP~V~l~g~~~A~iaY~rLtq~~ 47 (48)
++||++||++..++ ++++++|++|+|++ |+|+||++|++ +++.
T Consensus 57 ~~a~r~yf~~~~~~--~~~~~ei~~p~V~v-~gD~A~~~y~l-~~~~ 99 (134)
T 3ke7_A 57 LEQLRTYYKGMQLP--PADHFDMIRPVVQV-AQNIAVLTFNL-DSYL 99 (134)
T ss_dssp HHHHHHHHHHHCCC--CCSEEEEEEEEEEE-ETTEEEEEEEE-EEEE
T ss_pred HHHHHHHHHhcccC--CcceEEEeCCeEEE-eCceEEEEEEE-EEee
Confidence 37899999995544 77899999999999 77789999984 4543
No 4
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=98.34 E-value=2.8e-07 Score=52.53 Aligned_cols=46 Identities=67% Similarity=1.284 Sum_probs=38.8
Q ss_pred cceeeeeeccCCcCCceeeeEEeCCceEEecCceeEEEEeeeeeec
Q psy2132 2 EFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYM 47 (48)
Q Consensus 2 dFHkFyFen~~~~~~~~~~ttilnP~V~l~g~~~A~iaY~rLtq~~ 47 (48)
++++.||+..+++.....+.++.+|+|+++||++|+++|.++++..
T Consensus 58 ~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~gd~aav~~~~~~~~~~ 103 (143)
T 2ux0_A 58 DFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYI 103 (143)
T ss_dssp HHHHHHHHHTTTTCCSCEEEEEEEEEEEECSTTEEEEEEEEEEEEE
T ss_pred HHHHHHHHhhhhcCCCceeEEEeCCEEEEecCcEEEEEEeEeeeee
Confidence 5678899987766556788899999999999999999999988743
No 5
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=94.78 E-value=0.012 Score=33.25 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=21.8
Q ss_pred ceeeeEEeCCceEEecCceeEEEEeeee
Q psy2132 17 KAVNTTILNPNVHLLGDDAACIAYVRLT 44 (48)
Q Consensus 17 ~~~~ttilnP~V~l~g~~~A~iaY~rLt 44 (48)
+....++.+++|+++||+.|++.| |.+
T Consensus 68 ~~~~~~~~~~~v~~~g~d~Avv~~-~~~ 94 (134)
T 3fsd_A 68 KLSRLDLSDAVVRAAGEDGRVVVV-RAV 94 (134)
T ss_dssp EEEEEEEEEEEEEESSTTEEEEEE-EEE
T ss_pred eEEEEEEeccEEEEeCCCEEEEEE-EEE
Confidence 345678999999999998899877 344
No 6
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=92.34 E-value=0.11 Score=27.69 Aligned_cols=27 Identities=4% Similarity=0.048 Sum_probs=21.2
Q ss_pred ceeeeEEeCCceEEecCceeEEEEeee
Q psy2132 17 KAVNTTILNPNVHLLGDDAACIAYVRL 43 (48)
Q Consensus 17 ~~~~ttilnP~V~l~g~~~A~iaY~rL 43 (48)
+....++.+++|+++||++|+++..++
T Consensus 60 ~~~~~~~~~~~v~~~g~~a~~~~~~~~ 86 (123)
T 2r4i_A 60 ALRAVVPSDYIIRIIHDTVVVSVNIEI 86 (123)
T ss_dssp EEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEeecccEEEEECCEEEEEEEEEE
Confidence 345678999999999999888883344
No 7
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=87.96 E-value=0.21 Score=27.69 Aligned_cols=28 Identities=21% Similarity=0.084 Sum_probs=19.7
Q ss_pred ceeeeEEeCCceEEecCceeEEEEeeee
Q psy2132 17 KAVNTTILNPNVHLLGDDAACIAYVRLT 44 (48)
Q Consensus 17 ~~~~ttilnP~V~l~g~~~A~iaY~rLt 44 (48)
.+.+.++.+++|++.||.+.+....+++
T Consensus 67 ~~~~~~~~~~~v~~~gd~A~~~~~~~~~ 94 (142)
T 3f7s_A 67 GPMVFELAQLTVHAAGDLALAHWLNRCG 94 (142)
T ss_dssp SCEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CceEEEEeeeEEEEcCCEEEEEEEEEEe
Confidence 3577899999999888765444444443
No 8
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=42.12 E-value=45 Score=18.69 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=16.8
Q ss_pred eeeeEEeCCc-eEEecCceeEEEEe
Q psy2132 18 AVNTTILNPN-VHLLGDDAACIAYV 41 (48)
Q Consensus 18 ~~~ttilnP~-V~l~g~~~A~iaY~ 41 (48)
....++.++. +++.||. |++.|.
T Consensus 71 ~~~~~~~~~~~I~v~gd~-A~v~~~ 94 (145)
T 3soy_A 71 KRTLKLDAPPAIHVYGNA-AVAEFD 94 (145)
T ss_dssp EEEEEESSCCEEEEETTE-EEEEEE
T ss_pred ccceEEeeeeEEEEcCCE-EEEEEE
Confidence 3456889999 7999986 565543
No 9
>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18
Probab=38.04 E-value=30 Score=19.36 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=14.9
Q ss_pred EEeCCceEEecCceeEEEE
Q psy2132 22 TILNPNVHLLGDDAACIAY 40 (48)
Q Consensus 22 tilnP~V~l~g~~~A~iaY 40 (48)
.+.+..|+.+|+|.|...+
T Consensus 72 ~~~~~~i~~~g~d~A~~~~ 90 (129)
T 2owp_A 72 KLHRTVVTTFGTDFATVST 90 (129)
T ss_dssp EEEEEEEEEETTTEEEEEE
T ss_pred eecccEEEEecCCEEEEEE
Confidence 5678899999987776654
No 10
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=37.75 E-value=8.7 Score=23.72 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=7.6
Q ss_pred eCCceEEec
Q psy2132 24 LNPNVHLLG 32 (48)
Q Consensus 24 lnP~V~l~g 32 (48)
-|||+|++-
T Consensus 116 ~NpHaHim~ 124 (185)
T 2ns6_A 116 ENPHCHLMI 124 (185)
T ss_dssp TEEEEEEEE
T ss_pred CCceEEEEE
Confidence 589999984
No 11
>3bt4_A Amfpi-1, fungal protease inhibitor-1; silkworm, serine protease inhibitor, HYD inhibitor; 2.10A {Antheraea mylitta}
Probab=36.56 E-value=9.9 Score=21.55 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=12.7
Q ss_pred ceEEecCceeEEEEee
Q psy2132 27 NVHLLGDDAACIAYVR 42 (48)
Q Consensus 27 ~V~l~g~~~A~iaY~r 42 (48)
-|-|++|.+||-.|..
T Consensus 43 cvtll~e~aacktysk 58 (86)
T 3bt4_A 43 CVTLLRERAACKTYSK 58 (86)
T ss_dssp EEEEECTTCBCCCCBT
T ss_pred HHHHccccchHHHHHH
Confidence 3678899999988863
No 12
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=35.40 E-value=31 Score=18.74 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=15.7
Q ss_pred eEEeCCceEEecCceeEEEEeeee
Q psy2132 21 TTILNPNVHLLGDDAACIAYVRLT 44 (48)
Q Consensus 21 ttilnP~V~l~g~~~A~iaY~rLt 44 (48)
.++.+..+.+.||.+.++++.+++
T Consensus 65 ~~~~~~~v~~~gd~A~~~~~~~~~ 88 (142)
T 2gxf_A 65 PTQGKMILLEAGDTVLVLSQTLLD 88 (142)
T ss_dssp CEEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEEEEEcCCEEEEEEEEEEE
Confidence 345566777788876666766554
No 13
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=31.61 E-value=27 Score=25.85 Aligned_cols=34 Identities=29% Similarity=0.619 Sum_probs=24.0
Q ss_pred eeeeeccCCcCCceeeeEEeCCc-----eEEecCceeEE
Q psy2132 5 KFYFDNVVGKNCKAVNTTILNPN-----VHLLGDDAACI 38 (48)
Q Consensus 5 kFyFen~~~~~~~~~~ttilnP~-----V~l~g~~~A~i 38 (48)
+.|+--..++..-..++.|+.|- |..+|||.|-+
T Consensus 263 ~~yiaaAfPSacGKTnlAMl~p~~~gwkve~vGDDIawm 301 (608)
T 2faf_A 263 KRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVGDDIAWM 301 (608)
T ss_dssp EEEEEEECSSCTTSCCGGGCCCSSTTCEEEEEESSCEEE
T ss_pred EEEEEEecccccchhhHhhcCCCCCCceeEEeecceeee
Confidence 44555444555556778889885 99999997765
No 14
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=30.27 E-value=68 Score=17.24 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=20.0
Q ss_pred eeeEEeCCceEEecCceeEEEEeeeee
Q psy2132 19 VNTTILNPNVHLLGDDAACIAYVRLTQ 45 (48)
Q Consensus 19 ~~ttilnP~V~l~g~~~A~iaY~rLtq 45 (48)
..-.+.|+.|.+-||.+.+.+|...++
T Consensus 81 ~~h~~~~~~i~~~gd~A~~~~~~~~~~ 107 (155)
T 2rfr_A 81 CAHFLGPATVTVEGDTATARCHSVVFR 107 (155)
T ss_dssp EEEEECCCEEEEETTEEEEEEEEEEEE
T ss_pred eeEeCCCeEEEEeCCEEEEEEEEEEEE
Confidence 344577999999898877778876543
No 15
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=27.53 E-value=20 Score=26.63 Aligned_cols=34 Identities=32% Similarity=0.601 Sum_probs=24.2
Q ss_pred eeeeeccCCcCCceeeeEEeCC-----ceEEecCceeEE
Q psy2132 5 KFYFDNVVGKNCKAVNTTILNP-----NVHLLGDDAACI 38 (48)
Q Consensus 5 kFyFen~~~~~~~~~~ttilnP-----~V~l~g~~~A~i 38 (48)
|.|+--..++..-..++.|+.| +|..+|||.|-+
T Consensus 279 ~~yiaaAFPSaCGKTnlAMl~p~~~Gwkve~vGDDIAwm 317 (624)
T 3moe_A 279 KKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWM 317 (624)
T ss_dssp EEEEEEECCTTSSHHHHHTCCCSSTTCEEEEEESSCEEE
T ss_pred EEEEEEEcccccccccHhhcCCCCCCceeEEecccEEEE
Confidence 4566555555555677888888 789999996543
No 16
>3ksp_A Calcium/calmodulin-dependent kinase II associatio; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG; HET: MSE NHE; 2.59A {Exiguobacterium sibiricum 255-15}
Probab=27.51 E-value=56 Score=18.67 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=14.6
Q ss_pred EEeCCceEEecCceeEEEEe
Q psy2132 22 TILNPNVHLLGDDAACIAYV 41 (48)
Q Consensus 22 tilnP~V~l~g~~~A~iaY~ 41 (48)
+..+..|++.|| .|+++|.
T Consensus 69 ~~~~~~vr~~gd-~AvVt~~ 87 (129)
T 3ksp_A 69 ISESMVVEVFET-TALVQEI 87 (129)
T ss_dssp EEEEEEEEECSS-EEEEEEE
T ss_pred cccceeEEEECC-EEEEEEE
Confidence 455679999887 5898884
No 17
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=27.48 E-value=76 Score=17.22 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=18.9
Q ss_pred eEEeCCceEEecCceeEEEEeeeee
Q psy2132 21 TTILNPNVHLLGDDAACIAYVRLTQ 45 (48)
Q Consensus 21 ttilnP~V~l~g~~~A~iaY~rLtq 45 (48)
=.+.|+.|.+-||.+.+.+|..+.+
T Consensus 71 H~i~n~~i~~~~d~a~~~~~~~~~~ 95 (144)
T 2rgq_A 71 HCSSNAIIQGNYDEATMESYLTVVN 95 (144)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEEEE
T ss_pred EecCCeEEEEeCCEEEEEEEEEEEE
Confidence 3588999998888777777775543
No 18
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=27.41 E-value=67 Score=17.68 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=17.6
Q ss_pred eEEeCCceEEecC-ceeEEEEeeee
Q psy2132 21 TTILNPNVHLLGD-DAACIAYVRLT 44 (48)
Q Consensus 21 ttilnP~V~l~g~-~~A~iaY~rLt 44 (48)
=.+.||.|.+.|| .+-+.+|....
T Consensus 72 H~~~n~~I~~~gdd~A~~~~~~~~~ 96 (150)
T 3ef8_A 72 HHNSNICIDFVSETEANVRSVVLAI 96 (150)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EecCCEEEEEcCCCEEEEEEEEEEE
Confidence 3589999999996 45566776544
No 19
>4gb5_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, snoal-like domain, unknown function; HET: PGE; 1.55A {Kribbella flavida}
Probab=27.34 E-value=83 Score=17.25 Aligned_cols=27 Identities=30% Similarity=0.213 Sum_probs=21.0
Q ss_pred eeeeEEeCCceEEecCceeEEEEeeee
Q psy2132 18 AVNTTILNPNVHLLGDDAACIAYVRLT 44 (48)
Q Consensus 18 ~~~ttilnP~V~l~g~~~A~iaY~rLt 44 (48)
..+=.+.||.|.+=||.+-..+|+.-.
T Consensus 74 ~t~H~~~n~~I~vdgD~A~~~~~~~a~ 100 (159)
T 4gb5_A 74 ATHHAITGHVVTIDSDRATIHAHVRAE 100 (159)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEEecCCceEEEcCCEEEEEEEEEEE
Confidence 444568899999999988788887544
No 20
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=20.43 E-value=1.2e+02 Score=16.46 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=15.4
Q ss_pred eeeEEeCCceEEecCceeEEEE
Q psy2132 19 VNTTILNPNVHLLGDDAACIAY 40 (48)
Q Consensus 19 ~~ttilnP~V~l~g~~~A~iaY 40 (48)
...++.+++|++.||. |++.+
T Consensus 89 ~~~~~~~~~v~v~gd~-A~~~~ 109 (148)
T 3bb9_A 89 LTITPKEHQITITGDI-AISTS 109 (148)
T ss_dssp EEEEEEEEEEEEETTE-EEEEE
T ss_pred ceEEeeeEEEEEcCCE-EEEEE
Confidence 5667888899998875 55544
No 21
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=20.02 E-value=37 Score=18.58 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=14.7
Q ss_pred eeeeEEeCCceEEecCcee
Q psy2132 18 AVNTTILNPNVHLLGDDAA 36 (48)
Q Consensus 18 ~~~ttilnP~V~l~g~~~A 36 (48)
.+|--|-.|.|+++|+++-
T Consensus 6 ~iNe~Ir~~eVrli~~~Ge 24 (78)
T 1tif_A 6 IINEQIRAREVRLIDQNGD 24 (78)
T ss_dssp CBGGGCCCSEEEEECTTSC
T ss_pred ccCcccCCCEEEEECCCCc
Confidence 4555677899999998863
Done!