RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2132
         (48 letters)



>gnl|CDD|149404 pfam08332, CaMKII_AD, Calcium/calmodulin dependent protein kinase
          II Association.  This domain is found at the C-terminus
          of the Calcium/calmodulin dependent protein kinases II
          (CaMKII). These proteins also have a Ser/Thr protein
          kinase domain (pfam00069) at their N-terminus. The
          function of the CaMKII association domain is the
          assembly of the single proteins into large (8 to 14
          subunits) multimers.
          Length = 128

 Score = 92.9 bits (231), Expect = 8e-27
 Identities = 38/48 (79%), Positives = 44/48 (91%)

Query: 1  MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
          +EFH+FYF+N + K  KAV+TTILNP+VHLLGDDAACIAYVRLTQYMD
Sbjct: 47 LEFHRFYFENFLTKRPKAVHTTILNPHVHLLGDDAACIAYVRLTQYMD 94


>gnl|CDD|176255 cd08295, double_bond_reductase_like, Arabidopsis alkenal double
           bond reductase and leukotriene B4
           12-hydroxydehydrogenase.  This group includes proteins
           identified as the Arabidopsis alkenal double bond
           reductase and leukotriene B4 12-hydroxydehydrogenase.
           The Arabidopsis enzyme, a member of the medium chain
           dehydrogenase/reductase family, catalyzes the reduction
           of 7-8-double bond of phenylpropanal substrates as a
           plant defense mechanism.  Prostaglandins and related
           eicosanoids (lipid mediators involved in host defense
           and inflamation) are metabolized by the oxidation of the
           15(S)-hydroxyl group of the NAD+-dependent (type I
           15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH)
           followed by reduction by NADPH/NADH-dependent (type II
           15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to
           15-keto-13,14,-dihydroprostaglandins. 13-PGR is a
           bifunctional enzyme, since it also has leukotriene B(4)
           12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4)
           can be metabolized by LTB4 20-hydroxylase in inflamatory
           cells, and in other cells by bifunctional LTB4
           12-HD/PGR. These 15-PGDH and related enzymes are members
           of the medium chain dehydrogenase/reductase family. The
           medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR). The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of an
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.
          Length = 338

 Score = 25.7 bits (57), Expect = 0.71
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 5/31 (16%)

Query: 7   YFDNVVGKNCKAVNTTILNPNVHLLGDDAAC 37
           YFDNV GK   AV   +LN N+H  G  AAC
Sbjct: 225 YFDNVGGKMLDAV---LLNMNLH--GRIAAC 250


>gnl|CDD|221629 pfam12541, DUF3737, Protein of unknown function (DUF3737).  This
           family of proteins is found in bacteria, archaea and
           eukaryotes. Proteins in this family are typically
           between 281 and 297 amino acids in length.
          Length = 278

 Score = 24.1 bits (53), Expect = 2.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 7   YFDNVVGKNCKAVNTT 22
           Y DN+V +NCK +NT 
Sbjct: 211 YIDNLVLENCKLINTD 226


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0783    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,320,994
Number of extensions: 129525
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 3
Length of query: 48
Length of database: 10,937,602
Length adjustment: 21
Effective length of query: 27
Effective length of database: 10,006,168
Effective search space: 270166536
Effective search space used: 270166536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)